Citrus Sinensis ID: 011529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
Protein Sequence
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNAGGKTCYFSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcHHccccccccccccccccEEccccccccEccccccccccccccccccccccHHccHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHccccHHcEEEEHHHHHHHHEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHEHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHccccHHHHEEHHHHccHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEHHccHHHHcccccccHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msaralfyspilqsppyisarNKLSraelrprglprlllgvlsgdrvcsfrvsvrdvksesynvsekSVKFEEALKDIALRsedlgvdseslvpwweefpkRWFIVVLCFSAFLLCNMDRVNMSIAIlpmsaefnwnpatvgliqssFFWGYLLTQIAggiwadtvggKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIgegvampamNNILSKWVPVAERSRSLALVYSGMYlgsvtglafspflihrfgwpsvfysfgslGTVWFTVWLSkahsspaedpqlrpaeKKLIVSscaskepvktipwglilskppvWALIVSHFCHnwgtfilltwmptyynqVLHFNltesglfcvlpwLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIgflgpaffltqlshvdspAMAVLCMACsqgtdafsqsglysnhqdiaprysvsIISINilrapgshcilclnaggktcyfss
Flexible Loop (DISEMBL)
msaralfyspilqsppyisARNKLSRAELRPRGLPRlllgvlsgdrvcsfrvsvrdvksesynvseksvkfEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHsspaedpqlrpAEKKLIVSscaskepvktipwglilSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNaggktcyfss
Low Complexity Region (SEG)
MSARALFYSPILQSPPYISARNKLSRAElrprglprlllgVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNAGGKTCYFSS
Disordered region (IsUnstruct)
******FYSPIL******************PRGLPRLLLGVLSGDRVCSFRVSVRDVKS**YNV****VKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS*******************IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNAGGKTCYF**
Disordered Region (DISOPRED)
***********************************************************************************************WEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP*LRP*********************GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNAGGKTCYFSS
Disordered Region (DISEMBL)
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR**********EKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA**********RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNAGGKTCYFSS
Disordered Region (DISPRO)
*****LFYSPILQSPPYISARNKLSRAELRP*GLPRLLL*****************************************************VPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNAGGKTCYF**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSHCILCLNAGGKTCYFSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	483	2.2.26 [Sep-21-2011]
O82390	512	Sodium-dependent phosphat	yes	no	0.917	0.865	0.739	0.0
Q9SDI4	529	Probable anion transporte	yes	no	0.749	0.684	0.870	0.0
Q8GX78	541	Probable anion transporte	no	no	0.844	0.754	0.748	0.0
Q652N5	591	Probable anion transporte	no	no	0.855	0.698	0.735	0.0
Q7XJR2	512	Probable anion transporte	no	no	0.803	0.757	0.388	1e-77
Q66GI9	533	Probable anion transporte	no	no	0.734	0.666	0.419	1e-76
Q3E9A0	517	Probable anion transporte	no	no	0.743	0.694	0.416	5e-75
Q8W0H5	519	Probable anion transporte	no	no	0.697	0.649	0.409	3e-74
Q53WP9	535	Probable anion transporte	no	no	0.739	0.667	0.403	2e-71
Q9JI12	582	Vesicular glutamate trans	yes	no	0.745	0.618	0.361	1e-62

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/461 (73%), Positives = 374/461 (81%), Gaps = 18/461 (3%)

Query: 1   MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPR-LLLGVLSGDRVCSFRVS 53
           M+ARAL  S  + S      PP  ++ ++  R  L+P   P+ L + +   +R   FRV 
Sbjct: 1   MNARALLCSSNIHSLYTSNRPPEKTSSSRSLR-NLKPS--PKSLRVWIYPRNRSSVFRVL 57

Query: 54  VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVLCFS 111
           VR            +  + E   D    + D+  DS S  ++PWWEEFPKRW IV+LCFS
Sbjct: 58  VRSSDKSE----SSNSYYVEG--DKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFS 111

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 112 AFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRV 171

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           LGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ERSRS
Sbjct: 172 LGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRS 231

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP EDP L
Sbjct: 232 LALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL 291

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
            P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY+QV
Sbjct: 292 LPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQV 351

Query: 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411
           L FNL ESGL  V PW+TMA SAN GGWIADTLVS+G SVT VRKIMQ+IGFLGPAFFLT
Sbjct: 352 LKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLT 411

Query: 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           QL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 412 QLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/362 (87%), Positives = 329/362 (90%)

Query: 98  EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQI 157
           +FPKRW IV LCFSAFLLCNMDRVNMSIAILPMSAEF WNP TVGLIQSSFFWGYLLTQI
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 158 AGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
           AGGIWADTVGGK VLGFGV+WWSIATALTP AAKLGLPFLLV R FMG+GEGVAMPAMNN
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           ILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LIH FGWPSVFYSFGSLG  WF+ W
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337
            SKA+SSP EDP +   EKKLI S     EPVK IPWGLILSKPPVWALIVSHFCHNWGT
Sbjct: 295 ASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354

Query: 338 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 397
           FILLTWMPTYYNQVL FNLTESGLFCVLPWLTMA SAN GGWIADTLVS+GLSVTTVRKI
Sbjct: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKI 414

Query: 398 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIIS 457
           MQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDI PRY+  ++ 
Sbjct: 415 MQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLG 474

Query: 458 IN 459
           ++
Sbjct: 475 LS 476

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/410 (74%), Positives = 348/410 (84%), Gaps = 2/410 (0%)

Query: 45  DRVCSFRVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS--ESLVPWWEEFPKR 102
           D V  FR S++  +S +Y  SE+S   E  +      +E + V+   ++  PWW++FP+R
Sbjct: 72  DSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGSAEAILVEGNLQNASPWWQQFPRR 131

Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
           W IV+LCFS+FLLCNMDRVNMSIAILPMS E+NW+ ATVGLIQSSFFWGYLLTQI GGIW
Sbjct: 132 WVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIW 191

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
           AD  GGK VLGFGVVWWS AT +TP+AA+LGLPFLLVVR FMGIGEGVAMPAMNN+LSKW
Sbjct: 192 ADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKW 251

Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH 282
           +PV+ERSRSLALVYSGMYLGSVTGLAFSP LI +FGWPSVFYSFGSLG++WF +WL  A+
Sbjct: 252 IPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAY 311

Query: 283 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT 342
           SSP +DP L   EKK+I+     +EPV  IPW LILSKPPVWALI+SHFCHNWGTFILLT
Sbjct: 312 SSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLT 371

Query: 343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 402
           WMPTYYNQVL FNLTESGL CVLPWLTMA  AN+GGWIADTLVS+GLS+T VRKIMQSIG
Sbjct: 372 WMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIG 431

Query: 403 FLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           FLGPAFFL+QLSHV +PAMAVLCMACSQG+DAFSQSGLYSNHQDI PRY+
Sbjct: 432 FLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 481

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/424 (73%), Positives = 351/424 (82%), Gaps = 11/424 (2%)

Query: 35  PRLLLGVLSGDRVC---SFRVSVR---DVKSESYNVSEKSVKFEEALKDIALRSEDLGVD 88
           PR      S D  C    +++ VR   D K+E Y ++   +    +  D+   +  +G D
Sbjct: 113 PRRWDNFTSLDTACVQPDYKIPVRTRADCKAEQYEITGSPL----SPSDVPAEAVLIG-D 167

Query: 89  SESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSF 148
           +  + PWW++FPKRW +V+LCF +FLLCNMDRVNMSIAILPMS+EF W+PATVGLIQSSF
Sbjct: 168 TNEISPWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSF 227

Query: 149 FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE 208
           FWGYLLTQI GGIWAD  GGK VLGFGVVWWSIAT LTP+AAK+GLPFLLV+R FMGIGE
Sbjct: 228 FWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGE 287

Query: 209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
           GVAMPAMNNILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSP LI RFGWPSVFY+FGS
Sbjct: 288 GVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGS 347

Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIV 328
           LG+VWF +W  KAHSSP+EDP+L  AEK+ I+     KEPV +IPW LILSKPPVWALIV
Sbjct: 348 LGSVWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSIPWKLILSKPPVWALIV 407

Query: 329 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 388
           SHFCHNWGTFILLTWMPTYYNQVL FNLTESGL CVLPWLTMA  AN+GGWIADTLV +G
Sbjct: 408 SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRG 467

Query: 389 LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA 448
           +S+T VRKIMQSIGFLGPA FLT LS V +PAMAVLCMACSQG+DAFSQSGLYSNHQDI 
Sbjct: 468 VSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIG 527

Query: 449 PRYS 452
           PRY+
Sbjct: 528 PRYA 531

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  290 bits (743), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/404 (38%), Positives = 233/404 (57%), Gaps = 16/404 (3%)

Query: 55  RDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFL 114
           R+  ++  N S +    E  L          G  SE++       P+R  +V+L      
Sbjct: 59  RNAAAKKRNQSPERCAAEGVLTG--------GGGSEAIAEVRTMMPERIKVVILTACMMC 110

Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
           LCN DRV MS+A++P++ +  W+ + +G++QSSF WGY+ + + GG   D  GGK VL +
Sbjct: 111 LCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAW 170

Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
           GV  WS+AT LTP AA      LL VR F G+ EGVAMP+M  +LS+W P+ ER+ ++ +
Sbjct: 171 GVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGI 230

Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
             +G ++G+V GL  +P ++   G    F  F SLG +W + W S   ++P + P +  +
Sbjct: 231 SMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRS 290

Query: 295 EKKLIVS------SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
           E +LI +      S  S +P  ++   L+LSK P WA+I ++  +NWG F+LL+WMP Y+
Sbjct: 291 ELRLIQAGKPVQPSTISPKPNPSLR--LLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYF 348

Query: 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 408
             V + NL ++  F  LPW TMA S    G  +D L+  G SVT+VRKIMQSIGF+GP  
Sbjct: 349 QTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGL 408

Query: 409 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
            L  L+   SP+ A + M  +    +FSQ+G   N QDIAP+Y+
Sbjct: 409 SLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYA 452

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/372 (41%), Positives = 222/372 (59%), Gaps = 17/372 (4%)

Query: 94  PWWEEF--PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWG 151
           P + EF   +R  +V +   A  LCN DRV MS+AI+P+S    W+ +  G++QSSF WG
Sbjct: 101 PNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWG 160

Query: 152 YLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA 211
           YL++ IAGG   D  GGK V+ +GV  WS+AT LTP AA   L  LL  R  +G+ EGVA
Sbjct: 161 YLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVA 220

Query: 212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 271
           +P MNN++++W P  ERSR++ +  +G  LG+V GL  SP L+ + G    F  FG  G 
Sbjct: 221 LPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGF 280

Query: 272 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTI-----------PWGLILSK 320
           +W  VWLS   S+P   PQ+  +E + I      K+ + T+           P+G +LSK
Sbjct: 281 LWLLVWLSATSSAPDRHPQITKSELEYI----KQKKQISTMENKRISTSGIPPFGRLLSK 336

Query: 321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWI 380
            P WA+IV++  H+WG F++L+WMP Y+N V H NL ++  F  +PW  MAF+  + G+ 
Sbjct: 337 MPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFW 396

Query: 381 ADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL 440
           +D L+ +G S+T  RKIMQSIGF+GP   L  L+    P +A   ++ + G  +FS  G 
Sbjct: 397 SDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGF 456

Query: 441 YSNHQDIAPRYS 452
             N Q+IAP YS
Sbjct: 457 LINLQEIAPEYS 468

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  281 bits (720), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 226/375 (60%), Gaps = 16/375 (4%)

Query: 94  PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           P W+  P+R+ ++     AF++CNMD+VN+SIAI+PMS +F W+ +  GL+QSSFFWGY 
Sbjct: 90  PPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYA 149

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
           L+Q+ GG  +   GG+ VL  GV  WS ATAL P+ A   +P L+  R+ +GIGEGV+  
Sbjct: 150 LSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPS 208

Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
           A  +++++ +PV ERSR++  V+ G+ LGSV GL  +P +I  F W SVFY FG LG  W
Sbjct: 209 AATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGW 268

Query: 274 FT--VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEP----VKTIPWGLILSKPPVWALI 327
           F    +L++   S  +  ++  + K    S  A+KE     +K IPW      P VWA+I
Sbjct: 269 FVGFQFLNEEEVS-YKGNEISTSHK----SENATKEELGSSLKEIPWKSFFQSPAVWAMI 323

Query: 328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 387
            +HFC +WG +  L+W+PTY+++ L  NLTE+    +LP L      +L    AD L++ 
Sbjct: 324 YTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITN 383

Query: 388 GLSVTTVRKIMQSIGFLGPAFFLTQLSHVD---SPAMAVLCMACSQGTDAFSQSGLYSNH 444
           G+  TTVRKI Q+I F+ PA  +T LS VD    P   V  +       +F+ SGLY  H
Sbjct: 384 GVDTTTVRKICQTIAFVAPAICMT-LSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTH 442

Query: 445 QDIAPRYSVSIISIN 459
           QDI+P Y+  ++ I 
Sbjct: 443 QDISPEYASILLGIT 457

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  279 bits (714), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 141/344 (40%), Positives = 204/344 (59%), Gaps = 7/344 (2%)

Query: 116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG 175
           CN DRV MS+AI+P+S  + W P+  G++QSSF WGYL++ I GG   D  GGK V+ +G
Sbjct: 111 CNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYG 170

Query: 176 VVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV 235
           V  WS+AT L+P AA   L   L  RV +G+ EGVA+P+MNN++ +W P  ERS ++ + 
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIA 230

Query: 236 YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAE 295
            +G  LG+  GL  SP ++ R G    F  FG  G +W  VW+S    +P E+ Q+   E
Sbjct: 231 MAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHE 290

Query: 296 -------KKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
                  +KL+ +    +   K  P+  +LSK P WALI ++  H+WG F++L+WMP Y+
Sbjct: 291 LDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYF 350

Query: 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 408
             + H NL E+  F  LPW+ MA    + G ++D L+  G S+T  RKIMQ+IGF+GP  
Sbjct: 351 KTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGV 410

Query: 409 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
            L  L+   SP +A   +  + G  +F  SG   N Q+IAP+Y+
Sbjct: 411 ALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYA 454

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  270 bits (690), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/359 (40%), Positives = 210/359 (58%), Gaps = 2/359 (0%)

Query: 99  FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
            P+R  +V L  +  LLCN DRV MS+A++P +A++ W+ + +G++QSSF WGY+ + + 
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 159 GGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNI 218
           GG  AD  GGK V+      WS+AT LTP AA      LL +R   G+ EGVA P M+  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
           L KW P  ER+ ++ +   G +LG+V     +P ++   G    F  F SLG +W +VWL
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSS-CASKEPVKTIP-WGLILSKPPVWALIVSHFCHNWG 336
               S P +   +  +E +LI++   ASK      P    ILSK  +WA+IV++  +NWG
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWG 358

Query: 337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK 396
            F+LL+WMP Y+  V + NL ++  F  +PW  MA S  + G  AD L+  G SV  VRK
Sbjct: 359 YFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRK 418

Query: 397 IMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSI 455
           IMQSIGF+GP   L  L    +P++A + M  +    +FSQ+G + N QDIAP+Y+ S+
Sbjct: 419 IMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSL 477

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9JI12|VGLU2_RAT Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/384 (36%), Positives = 203/384 (52%), Gaps = 24/384 (6%)

Query: 99  FPKRWFIVVL-----CFSAFLLCNM-----DRVNMSI-----AILPMSAEFNWNPATVGL 143
            P+R+ I ++     C S  + CN+     D VN S       ++   A+FNW+P TVG+
Sbjct: 67  LPRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGM 126

Query: 144 IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF 203
           I  SFFWGY++TQI GG  A  +    V G  ++  S    L P AA++    ++ VR+ 
Sbjct: 127 IHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRIL 186

Query: 204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF 263
            G+ EGV  PA + I SKW P  ERSR     + G Y G+V  +  +  L+   GW SVF
Sbjct: 187 QGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVF 246

Query: 264 YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK-------EPVKTIPWGL 316
           Y +GS G VW+  WL  ++ SPA+ P +   E++ I  S           E  KT PW  
Sbjct: 247 YVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKT-PWRK 305

Query: 317 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANL 376
             +  PV+A+IV++FC +W  ++LL   P Y+ +V  F +++ G+   +P L M     +
Sbjct: 306 FFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPI 365

Query: 377 GGWIADTLVSKG-LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF 435
           GG IAD L SK  LS TTVRKIM   GF   A  L  + +  +  +A+  +  + G   F
Sbjct: 366 GGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGF 425

Query: 436 SQSGLYSNHQDIAPRYSVSIISIN 459
           + SG   NH DIAPRY+  ++ I+
Sbjct: 426 AISGFNVNHLDIAPRYASILMGIS 449

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also play a role in the endocrine glutamatergic system of other tissues such as pineal gland and pancreas. May also mediate the transport of inorganic phosphate.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
224104305	520	predicted protein [Populus trichocarpa]	0.902	0.838	0.782	0.0
255569283	530	Sodium-dependent phosphate transport pro	0.917	0.835	0.766	0.0
225434656	514	PREDICTED: sodium-dependent phosphate tr	0.931	0.875	0.770	0.0
449515105	528	PREDICTED: sodium-dependent phosphate tr	0.935	0.856	0.769	0.0
224054558	431	predicted protein [Populus trichocarpa]	0.761	0.853	0.916	0.0
356539597	511	PREDICTED: sodium-dependent phosphate tr	0.813	0.769	0.849	0.0
358346124	516	Sodium-dependent phosphate transport pro	0.819	0.767	0.825	0.0
388500962	516	unknown [Medicago truncatula]	0.819	0.767	0.820	0.0
297826359	512	hypothetical protein ARALYDRAFT_481880 [	0.910	0.859	0.747	0.0
312281837	510	unnamed protein product [Thellungiella h	0.906	0.858	0.741	0.0

>gi|224104305|ref|XP_002313389.1| predicted protein [Populus trichocarpa] gi|222849797|gb|EEE87344.1| predicted protein [Populus trichocarpa]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/473 (78%), Positives = 394/473 (83%), Gaps = 37/473 (7%)

Query: 2   SARALFYS---PI---LQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR 55
           ++RAL YS   P    L+SPP IS+  +      RPR      + + +  R C FRVSVR
Sbjct: 3   TSRALLYSFTDPTFRPLKSPPDISSPKR------RPRERLNFRVRLHTDHRCCVFRVSVR 56

Query: 56  ------------DVKSESYNVSE---KSVKFEE-ALKDIALRSEDLGVDSESLVPWWEEF 99
                       DVKSE Y + E   +S K EE AL D+ L         +S VPWWEEF
Sbjct: 57  NSGRGETGKVYADVKSEPYEILETVPESAKLEEDALDDVVL---------DSTVPWWEEF 107

Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
           PKRW IV+LCFSAFL CNMDRVNMSIAILPMSAE NWNPATVGLIQSSFFWGYLLTQ+AG
Sbjct: 108 PKRWVIVILCFSAFLPCNMDRVNMSIAILPMSAENNWNPATVGLIQSSFFWGYLLTQVAG 167

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
           GIWADTVGGK VLGF V+WWSIAT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNIL
Sbjct: 168 GIWADTVGGKKVLGFAVIWWSIATILTPVAAKVGLPFLLVVRAFMGIGEGVAMPAMNNIL 227

Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
           SKWVPV+ERSRSLA VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVWF  WLS
Sbjct: 228 SKWVPVSERSRSLAFVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWFAAWLS 287

Query: 280 KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI 339
           KAHSSP +DPQLRPAEKKLI ++  SKEPV++IPW LILSK PVWALIVSHFCHNWGTFI
Sbjct: 288 KAHSSPLDDPQLRPAEKKLIFANSFSKEPVESIPWRLILSKAPVWALIVSHFCHNWGTFI 347

Query: 340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 399
           LLTWMPTYYNQVL FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ
Sbjct: 348 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 407

Query: 400 SIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           SIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 408 SIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569283|ref|XP_002525609.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis] gi|223535045|gb|EEF36727.1| Sodium-dependent phosphate transport protein, putative [Ricinus communis]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/479 (76%), Positives = 395/479 (82%), Gaps = 36/479 (7%)

Query: 1   MSARALFY---SPILQSPPYISARNKLSRAELRPRGLPR-------LLLGVLSGDRVCSF 50
           MSARAL Y   +P+ +      +  K S  ++ P   PR       + L    G     F
Sbjct: 1   MSARALLYYSSAPLFRPRKTDISVPKKSFGQIIPDLKPRESFNFRVVRLQPEGGSCSGLF 60

Query: 51  RVSVR--------------DVKSESYNVSE---KSVKFEEALKDIALRSEDLGVDSESLV 93
           RVS                DVKSE Y +SE   +SVKFE++L          G DSES +
Sbjct: 61  RVSAHKSSRSRSEFVKVHADVKSERYKISESVPESVKFEDSLS---------GNDSESSL 111

Query: 94  PWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           PWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVGLIQSSFFWGYL
Sbjct: 112 PWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVGLIQSSFFWGYL 171

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMP 213
           LTQIAGGIWADTVGGK VLGFGVVWWSIATALTPVAAK GLPFLLVVRVFMGIGEGVAMP
Sbjct: 172 LTQIAGGIWADTVGGKLVLGFGVVWWSIATALTPVAAKFGLPFLLVVRVFMGIGEGVAMP 231

Query: 214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 273
           AM NILSKWVPV+ERSRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGT+W
Sbjct: 232 AMTNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTIW 291

Query: 274 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
           F VWL+KA+SSP +DPQLRP EK+LI+++ A KEPVK IPWGLILSKPPVWALIVSHFCH
Sbjct: 292 FAVWLNKAYSSPLDDPQLRPEEKQLIIANSACKEPVKVIPWGLILSKPPVWALIVSHFCH 351

Query: 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 393
           NWGTFILLTWMPTYYNQVL F+LTESGL CVLPWLTMAFSANLGGWIADTLVSKG SVTT
Sbjct: 352 NWGTFILLTWMPTYYNQVLKFDLTESGLVCVLPWLTMAFSANLGGWIADTLVSKGYSVTT 411

Query: 394 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           VRKIMQ+IGFLGPAFFLTQLSH++SPAMAVLCM CSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 412 VRKIMQTIGFLGPAFFLTQLSHINSPAMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYS 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434656|ref|XP_002279594.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Vitis vinifera] gi|297745933|emb|CBI15989.3| unnamed protein product [Vitis vinifera]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/470 (77%), Positives = 390/470 (82%), Gaps = 20/470 (4%)

Query: 1   MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVS------- 53
           M+ARA  +S    SP + S  +  + ++  P    RL       DR C FRVS       
Sbjct: 1   MNARAYLFS---FSPDFHSLHSHKASSDF-PLPKKRLFRFRFQ-DRTCVFRVSGRNAGEF 55

Query: 54  ----VRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLC 109
                R++      V  + VKF+EAL D+ L  EDL    E  VPWWE+FPKRW IV+LC
Sbjct: 56  TGLARREIGKVFAEVKSEQVKFQEALDDVVLGEEDL----EGDVPWWEQFPKRWVIVILC 111

Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
           FSAFLLCNMDRVNMSIAILPMSAEFNW+P TVGLIQSSFFWGYLLTQIAGGIWADTVGGK
Sbjct: 112 FSAFLLCNMDRVNMSIAILPMSAEFNWSPTTVGLIQSSFFWGYLLTQIAGGIWADTVGGK 171

Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
            VLGFGVVWWSIAT LTP+AAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVPV+ERS
Sbjct: 172 LVLGFGVVWWSIATILTPIAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVPVSERS 231

Query: 230 RSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 289
           RSLALVYSGMYLGSVTGLAFSPFLIH FGWPSVFYSFGSLGTVW   WLSKA+SSP EDP
Sbjct: 232 RSLALVYSGMYLGSVTGLAFSPFLIHSFGWPSVFYSFGSLGTVWLATWLSKAYSSPLEDP 291

Query: 290 QLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN 349
           +L P EKKLIVS+  +KEPVK IPW LILSKPPVWALI SHFCHNWGTFILLTWMPTYYN
Sbjct: 292 ELLPKEKKLIVSNSVTKEPVKKIPWRLILSKPPVWALIGSHFCHNWGTFILLTWMPTYYN 351

Query: 350 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF 409
           QVL FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ+IGFLGPAFF
Sbjct: 352 QVLKFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQTIGFLGPAFF 411

Query: 410 LTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN 459
           LTQLSHV+SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS  ++ ++
Sbjct: 412 LTQLSHVNSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515105|ref|XP_004164590.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Cucumis sativus]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/468 (76%), Positives = 389/468 (83%), Gaps = 16/468 (3%)

Query: 1   MSARALFYSPILQSPPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSVR----- 55
           M+A AL YS     P    +  K S  E RP+   R  L VL  DR   F++S R     
Sbjct: 1   MAAGALLYSFSPTPPNPSDSFKKFSLTERRPKFPSRFHLTVLPEDRCFVFQISARRHSGG 60

Query: 56  --------DVKSESYNVSEK---SVKFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWF 104
                   D+KS  Y+VS K   SVKF  ++    L  ++   +    +PWW++FPKRW 
Sbjct: 61  RGNWRLWTDLKSNPYDVSIKPPNSVKFNSSIDKSVLDDDEEEDELGDELPWWKQFPKRWL 120

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
           IV LCFSAFLLCNMDRVNMSIAILPMSAE+NWNP TVGLIQSSFFWGYLLTQIAGGIWAD
Sbjct: 121 IVSLCFSAFLLCNMDRVNMSIAILPMSAEYNWNPQTVGLIQSSFFWGYLLTQIAGGIWAD 180

Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
           TVGGK VLGFGV+WWS+AT LTPVAAK+GLPFLLVVR FMGIGEGVAMPAMNNILSKWVP
Sbjct: 181 TVGGKLVLGFGVIWWSVATVLTPVAAKIGLPFLLVVRAFMGIGEGVAMPAMNNILSKWVP 240

Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 284
           VAERSRSLALVYSGMYLGSVTGLAFSPFLIH++GWPSVF+SFGSLG VWF VWL+KAHSS
Sbjct: 241 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFFSFGSLGAVWFAVWLNKAHSS 300

Query: 285 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 344
           P +DPQLRP EKKLI ++  SKEPVK+IPWG ILSKPPVWALIVSHFCHNWGTFILLTWM
Sbjct: 301 PLDDPQLRPQEKKLIFANSVSKEPVKSIPWGTILSKPPVWALIVSHFCHNWGTFILLTWM 360

Query: 345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 404
           PTYY+QVL FNLTESGL CVLPWLTMAFSANLGGWIADTLVS+GLSVTTVRKIMQSIGFL
Sbjct: 361 PTYYHQVLKFNLTESGLLCVLPWLTMAFSANLGGWIADTLVSRGLSVTTVRKIMQSIGFL 420

Query: 405 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 421 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054558|ref|XP_002298320.1| predicted protein [Populus trichocarpa] gi|222845578|gb|EEE83125.1| predicted protein [Populus trichocarpa]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/370 (91%), Positives = 352/370 (95%), Gaps = 2/370 (0%)

Query: 83  EDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVG 142
           +D G+DS   VPWWEEFPKRW IV+LCFSAFLLCNMDRVNMSIAILPMSAE+NWNPATVG
Sbjct: 4   DDAGLDST--VPWWEEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPATVG 61

Query: 143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV 202
           LIQSSFFWGYLLTQIAGGIWADTVGGK VLGFGV+WWSIATALTPVAAK GLPFLLVVR 
Sbjct: 62  LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATALTPVAAKAGLPFLLVVRA 121

Query: 203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV 262
           FMGIGEGVAMPAMN ILSKWVPV+ERSRSLALVYSGMYLGSVTGL FSPFLIH+FGWPSV
Sbjct: 122 FMGIGEGVAMPAMNTILSKWVPVSERSRSLALVYSGMYLGSVTGLGFSPFLIHQFGWPSV 181

Query: 263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP 322
           FYSFGSLGTVWF  WLSKAHSSP +DPQLRP EKKLI ++ +SKEPVK+IPWGLILSK P
Sbjct: 182 FYSFGSLGTVWFAAWLSKAHSSPLDDPQLRPEEKKLIFANSSSKEPVKSIPWGLILSKGP 241

Query: 323 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD 382
           VWALIVSHFCHNWGTFILLTWMPTYYNQVL FNLTESGLFCVLPWLTMAFSANLGGWIAD
Sbjct: 242 VWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFSANLGGWIAD 301

Query: 383 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYS 442
           TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH+DSPAMAVLCMACSQGTDAFSQSGLYS
Sbjct: 302 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYS 361

Query: 443 NHQDIAPRYS 452
           NHQDIAPRYS
Sbjct: 362 NHQDIAPRYS 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539597|ref|XP_003538283.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Glycine max]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/398 (84%), Positives = 363/398 (91%), Gaps = 5/398 (1%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDS-ESLVPWWEEFPKRWFIVVLCFSAFL 114
           +VKSE  N+SE S K+E+ +  +  + +  G+D+ E    WW+ FPKRW IVVLCFSAFL
Sbjct: 58  NVKSEK-NLSE-SPKYEDDV--VVQKKKKRGLDNVEEEARWWQVFPKRWVIVVLCFSAFL 113

Query: 115 LCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF 174
           LCNMDRVNMSIAILPMSAE+NWNP+TVGLIQSSFFWGYLLTQIAGGIWADTVGGK VLGF
Sbjct: 114 LCNMDRVNMSIAILPMSAEYNWNPSTVGLIQSSFFWGYLLTQIAGGIWADTVGGKQVLGF 173

Query: 175 GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL 234
           GVVWWS+ATALTP+AAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPV+ERSRSLAL
Sbjct: 174 GVVWWSVATALTPIAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVSERSRSLAL 233

Query: 235 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 294
           VYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW +VWLSKAHSSP EDP+LRP 
Sbjct: 234 VYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWCSVWLSKAHSSPLEDPELRPE 293

Query: 295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF 354
           EKKLI ++C+SKEPVKTIPW LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL F
Sbjct: 294 EKKLITANCSSKEPVKTIPWRLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKF 353

Query: 355 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 414
           NLTESGLFCVLPW  MA SAN+GGWIADTLVSKGLSVT VRKIMQ+IGFLGPAFFLTQLS
Sbjct: 354 NLTESGLFCVLPWFIMAISANVGGWIADTLVSKGLSVTRVRKIMQTIGFLGPAFFLTQLS 413

Query: 415 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           H +SP MAVLCM CSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 414 HANSPVMAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYS 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346124|ref|XP_003637121.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355503056|gb|AES84259.1| Sodium-dependent phosphate transport protein [Medicago truncatula]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/401 (82%), Positives = 356/401 (88%), Gaps = 5/401 (1%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVP----WWEEFPKRWFIVVLCFS 111
           DVKSE +   E S K+++      + S   GVD E  V     WWE FPKRW IV+LCFS
Sbjct: 57  DVKSEKHG-PEASSKYQDLAVHKKVVSGLDGVDVEEEVTESSSWWEVFPKRWVIVILCFS 115

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIWADTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQV 175

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
           RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355

Query: 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411
           L FNLTESGLFCVLPWLTMA SAN GGWIADTLV++G+SVT VRKIMQ++GFLGPAFFLT
Sbjct: 356 LKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLT 415

Query: 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           QLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 416 QLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYS 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500962|gb|AFK38547.1| unknown [Medicago truncatula]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/401 (82%), Positives = 355/401 (88%), Gaps = 5/401 (1%)

Query: 56  DVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESLVP----WWEEFPKRWFIVVLCFS 111
           DVKSE +   E S K+++      + S    VD E  V     WWE FPKRW IV+LCFS
Sbjct: 57  DVKSEKHG-PEASSKYQDLAVHKKVVSGLDSVDVEEEVTESSSWWEVFPKRWVIVILCFS 115

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
           AFLLCNMDRVNMSIAILPMSAE+NWNP TVGL+QSSFFWGYLLTQIAGGIW+DTVGGK V
Sbjct: 116 AFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWSDTVGGKQV 175

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L FGV+WWS+AT LTPVAAKLGLPFLLV R FMGIGEGVAMPAMNNILSKWVPVAERSRS
Sbjct: 176 LAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRS 235

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           LALVYSGMYLGSVTGLAFSPFLIH++GWPSVFYSFGSLGTVWF +WLSKAHSSP +DP++
Sbjct: 236 LALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEM 295

Query: 292 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 351
           RP EKKLI ++  SKEPVK IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV
Sbjct: 296 RPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 355

Query: 352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 411
           L FNLTESGLFCVLPWLTMA SAN GGWIADTLV++G+SVT VRKIMQ++GFLGPAFFLT
Sbjct: 356 LKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLT 415

Query: 412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           QLSH+DSP +AVLCM CSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 416 QLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYS 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826359|ref|XP_002881062.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata] gi|297326901|gb|EFH57321.1| hypothetical protein ARALYDRAFT_481880 [Arabidopsis lyrata subsp. lyrata]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/464 (74%), Positives = 374/464 (80%), Gaps = 24/464 (5%)

Query: 1   MSARALFYSPILQS------PPYISARNKLSRAELRPRGLPRLLLGVLSGDRVCSFRVSV 54
           M+ARAL  SP L S      PP     ++  R  L+P     L + +   +R   FRV V
Sbjct: 1   MNARALLCSPNLHSLYTSNRPPEKPTSSRSLRT-LKP-APNSLRVWIYPRNRSGVFRVLV 58

Query: 55  RDVK----SESYNVSEKSVKFEEALKDIALRSEDLGVDSES--LVPWWEEFPKRWFIVVL 108
           R       S SY V  + V           R+  +  DS S  +VPWWEEFPKRW IV+L
Sbjct: 59  RSSDKRESSNSYYVDGERVN----------RTNGVVSDSPSSIVVPWWEEFPKRWVIVLL 108

Query: 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
           CFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG
Sbjct: 109 CFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168

Query: 169 KAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER 228
           K VLGFGV+WWSIAT LTPVAAKLGLP+LLVVR FMG+GEGVAMPAMNNILSKWVPV ER
Sbjct: 169 KRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQER 228

Query: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288
           SRSLALVYSGMYLGSVTGLAFSPFLIH+FGWPSVFYSFGSLGTVW T+WL+KA SSP ED
Sbjct: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLED 288

Query: 289 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
           P L P E+KLIV +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY
Sbjct: 289 PTLLPEERKLIVDNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYY 348

Query: 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 408
           +QVL FNL ESGL  V PW+TMA SAN GGWIADTLVS+G SVT VRKIMQ+IGFLGPAF
Sbjct: 349 HQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAF 408

Query: 409 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           FLTQL H+DSP MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS
Sbjct: 409 FLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281837|dbj|BAJ33784.1| unnamed protein product [Thellungiella halophila] gi|312281881|dbj|BAJ33806.1| unnamed protein product [Thellungiella halophila]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/464 (74%), Positives = 370/464 (79%), Gaps = 26/464 (5%)

Query: 1   MSARALFYSPILQS------PPYISARN----KLSRAELRPRGLPRLLLGVLSGDRVCSF 50
           M+ARAL  SP L S      PP  S+RN    K     LR    PR        +R   F
Sbjct: 1   MNARALLCSPNLHSLYTSNRPPETSSRNRRILKSDPKSLRVWIYPR--------NRSAVF 52

Query: 51  RVSVRDVKSESYNVSEKSVKFEEALKDIALRSEDLGVDSESL--VPWWEEFPKRWFIVVL 108
           RV VR         S   V  +   K+I  R+   GV S+SL  +PWW+EFPKRW IV+L
Sbjct: 53  RVLVRSSDKGEIGNSNAEVYVD---KEIVTRN---GVASDSLSSLPWWKEFPKRWVIVLL 106

Query: 109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 168
           CFSAFLLCNMDRVNMSIAILPMSAE+ WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG
Sbjct: 107 CFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG 166

Query: 169 KAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER 228
           K VLGFGV+WWSIAT LTP+AAKLGLPFLLVVR FMG+GEGVAMPAMNN+LSKWVPV ER
Sbjct: 167 KMVLGFGVIWWSIATILTPIAAKLGLPFLLVVRAFMGVGEGVAMPAMNNLLSKWVPVQER 226

Query: 229 SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 288
           SRSLALVYSGMY+GSV GLAFSPFLIH+FGWPSVFY FGSLGTVW T+WL+KA SSP ED
Sbjct: 227 SRSLALVYSGMYIGSVIGLAFSPFLIHQFGWPSVFYCFGSLGTVWLTLWLTKAESSPVED 286

Query: 289 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY 348
             L P E+KLI  +CASKEPVK+IPW LILSKPPVWALI  HFCHNWGTFILLTWMPTYY
Sbjct: 287 LTLLPQERKLIADNCASKEPVKSIPWRLILSKPPVWALICCHFCHNWGTFILLTWMPTYY 346

Query: 349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 408
           +QVL FNL ESGL  V PWLTMA SAN GGWIADTLVS+G SVT VRKIMQ+IGFLGPAF
Sbjct: 347 HQVLKFNLMESGLLSVFPWLTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAF 406

Query: 409 FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYS 452
           FLTQL H+DSP MAVLCMACSQG DAFSQSGLYSNHQDIAPRYS
Sbjct: 407 FLTQLKHIDSPTMAVLCMACSQGLDAFSQSGLYSNHQDIAPRYS 450

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDI4	PHT41_ORYSJ	No assigned EC number	0.8701	0.7494	0.6843	yes	no
O82390	ANTR1_ARATH	No assigned EC number	0.7396	0.9171	0.8652	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	483
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-59
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-42
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	9e-42
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-26
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-22
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	7e-19
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-12
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	3e-12
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-10
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	2e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-09
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	1e-08
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-07
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	6e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	1e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	5e-04
PRK05122	399	PRK05122, PRK05122, major facilitator superfamily	0.002

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  201 bits (514), Expect = 2e-59
 Identities = 111/331 (33%), Positives = 162/331 (48%), Gaps = 5/331 (1%)

Query: 133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL 192
            F W+ A  GLI SS F+G ++ QI  G  A     K  +G G+   S+ + + P AA  
Sbjct: 70  NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG 129

Query: 193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF 252
           G+  ++  RV  G+ +G   PA + I+ KW P  ERSR L +  SG  LG+   L  S +
Sbjct: 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGW 189

Query: 253 LI-HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSC-ASKEPV- 309
           L     GWP +FY FG +G  W  +W       P+  P +   EKK I SS    K    
Sbjct: 190 LCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTR 249

Query: 310 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT 369
           +++P   I    PVWA+  + F H W   IL T++PT+ + VL  +  E+GL   LP+L 
Sbjct: 250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309

Query: 370 MAFSANLGGWIADTLVSKG-LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC 428
               +   G++AD L S   LS+T  RKI   IG LGP  F   L ++ +     + +  
Sbjct: 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369

Query: 429 -SQGTDAFSQSGLYSNHQDIAPRYSVSIISI 458
            +    +   +G+  N  D+APR+   I  I
Sbjct: 370 LANAVSSGPLAGVLINSLDLAPRFLGFIKGI 400

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  152 bits (386), Expect = 4e-42
 Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 19/343 (5%)

Query: 108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG 167
           L  +AFL      +      L ++ +   +P  +GL+ ++F  GY L Q   G  +D  G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 168 GKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE 227
            + VL  G++ +++   L   A+   L  LLV+RV  G+G G   PA   +++ W P  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 228 RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
           R R+L L+ +G  LG+  G      L   FGW + F     L  +   +        P E
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 288 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 347
             + +PAE+           P   +P   +L + PV  L+++     +  F LLT++P  
Sbjct: 179 SKRPKPAEEA----------PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL- 227

Query: 348 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA 407
           Y +VL  +   +GL   L  L  A    L G ++D L  +       R ++  +  +  A
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR------RRLLLALLLLILAA 281

Query: 408 FFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR 450
             L  LS  +S    ++ +             L +   D+AP+
Sbjct: 282 LGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324

Length = 346

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  153 bits (388), Expect = 9e-42
 Identities = 88/348 (25%), Positives = 148/348 (42%), Gaps = 10/348 (2%)

Query: 112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV 171
             ++  +DR N+S A   +  +   + A  G + S+F WGY++ Q  GG   D  G +  
Sbjct: 2   VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT 61

Query: 172 LGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS 231
           L   +V W + T L   A       L ++RV +G  E    P +  I++ W P +ER+ +
Sbjct: 62  LAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 232 LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 291
           +++  S   LG + G     +++  F W   F   G LG +W  +WL      P +   L
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL 179

Query: 292 RPAEKKLIV----SSCASKEPVKTIPWGL--ILSKPPVWALIVSHFCHNWGTFILLTWMP 345
              EK ++V    +    K P     + +  +L    VW L +  F  N G    LTW P
Sbjct: 180 TEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFP 239

Query: 346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 405
           TY  Q    ++ E+G    LP +       LGG ++D L+ +G S+    +    I  L 
Sbjct: 240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL-VFARKTAIIAGLV 298

Query: 406 PAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSV 453
            +  +   ++V+ P  A+  +A          +  ++   D AP    
Sbjct: 299 LSLLMFATNYVNIPYAALALVALGFFGLGAG-AIGWALISDNAPGNIA 345

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  107 bits (270), Expect = 7e-26
 Identities = 78/339 (23%), Positives = 137/339 (40%), Gaps = 53/339 (15%)

Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
           ++L F  F L  +DR  +S A+  ++ +   + +  GLI S+F  GY L  +  G  +D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 166 VGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV 225
            G + VL  G++ +++ + L   A    L  LLV R  +G+G G   PA   ++++W P 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 226 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 285
            ER R                           G  S  +  G+L        L+++    
Sbjct: 119 KERGR-------------------------ALGLFSAGFGLGALLGPLLGGLLAESLGWR 153

Query: 286 AEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS--KPPVWALIVSHFCHNWGTFILLTW 343
                        ++ +         +   L+L      +  L ++ F  ++G + LLT+
Sbjct: 154 WL----------FLILAILG------LLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTY 197

Query: 344 MPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF 403
           +P Y  +VL  +  E+GL   L  L     A LGG ++D L          R+++  IG 
Sbjct: 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--------RRLLLLIGL 249

Query: 404 LGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYS 442
           L  A  L  L+   S A+ ++ +        F+   L +
Sbjct: 250 LLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 83/362 (22%), Positives = 152/362 (41%), Gaps = 32/362 (8%)

Query: 100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAG 159
             +W  ++L F   L+   D   M  A   +SAE+  +P  +G + S+   G     +  
Sbjct: 13  RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFF 72

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
           G  AD +G + VL + ++ +S+ T L  +A    +  LL++R   G+G G  MP +N ++
Sbjct: 73  GPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALV 130

Query: 220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS 279
           S++ P   R  ++ L++ G  +G+  G   + +LI  FGW S+FY  G +  +   + L 
Sbjct: 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAPLLLLLLLM 189

Query: 280 KAHSSPAEDPQLRPAEKKL-IVSSCA---------------SKEPVKTIPWGLILSKPPV 323
           +      +    +  E    IV++ A               + +  K   +  +      
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249

Query: 324 WA---LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWI 380
                L + +F    G + L  W+P    + L F+L+ +     L        + + GW+
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWL 308

Query: 381 ADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL 440
           AD L           ++   +  LG  F +   S + SP + +L  A +       QSGL
Sbjct: 309 ADRL---------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGL 359

Query: 441 YS 442
           Y+
Sbjct: 360 YA 361

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 54/284 (19%), Positives = 102/284 (35%), Gaps = 12/284 (4%)

Query: 110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK 169
           F  +    + R N ++A+  +  E   +   +GL+ SSF   Y +++   G  +D    +
Sbjct: 1   FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60

Query: 170 AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERS 229
             L  G++  +I            L  +  +    GI +G+  P     ++KW   +ER 
Sbjct: 61  VFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118

Query: 230 RSLALVYSGMYLGS--VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 287
             ++       +G   +  L         + W  VF   G +  +   +       SP +
Sbjct: 119 TWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVSLICFLLLRDSP-Q 176

Query: 288 DPQLRPAEKKLI--VSSCASKEPVKTIPWGL----ILSKPPVWALIVSHFCHNWGTFILL 341
              L PAE+         A K+  +     +    +L    +W + + +         +L
Sbjct: 177 SCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL 236

Query: 342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 385
            W P Y  Q   F+  ++     L  L       L GW++D L 
Sbjct: 237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 8/162 (4%)

Query: 106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT 165
           + LCF   LL  +D  +  +A   M+ EF  + A +G   S+   G L   + GG  AD 
Sbjct: 17  IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR 76

Query: 166 VGGKAVLGFGVVWW---SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW 222
           +G K +L   V  +   S+ATA          P LLV R+  G+G G A+P +  + S+ 
Sbjct: 77  IGRKRILIVSVALFGLFSLATAQAW-----DFPSLLVARLLTGVGLGGALPNLIALTSEA 131

Query: 223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 264
           V    R  +++L+Y G+  G                W  +FY
Sbjct: 132 VGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY 173

Length = 406

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 70/355 (19%), Positives = 127/355 (35%), Gaps = 50/355 (14%)

Query: 101 KRWFIVVLC-----FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLT 155
           KRW I +       ++AF L    R N ++A+  +  +   +   +G++ S+F   Y ++
Sbjct: 24  KRWRIQIFLSIFIGYAAFYLT---RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVS 80

Query: 156 QIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMP 213
           +   G+ +D    +  + FG+    I +A+  +       L    V+ V  G  +G+  P
Sbjct: 81  KFVMGVLSDRSNPRYFMAFGL----ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWP 136

Query: 214 AMNNILSKWVPVAERSRSLALV-----YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 268
                ++ W    ER    ++        G     V  LA   F     GW + FY  G 
Sbjct: 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA---FFAFHGGWRAAFYFPGI 193

Query: 269 LGTVWFTVWLSKAHSSPAEDPQLRPAEK---KLIVSSCASKE----PVKTIPWGLILSKP 321
           +  +   + L        +   L P E+     +      KE        I    +L   
Sbjct: 194 IAII-VALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK 252

Query: 322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF------SAN 375
            +W L +++       + +  W P Y ++V  F+L ++       W    F         
Sbjct: 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN------WAISLFEVAGLPGTL 306

Query: 376 LGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVDSPAMAVLCMAC 428
           L GW++D  + KG      R  M  I  L     L    L+   S  +  + +  
Sbjct: 307 LAGWLSD-KLFKGR-----RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFI 355

Length = 448

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 59/306 (19%), Positives = 116/306 (37%), Gaps = 29/306 (9%)

Query: 123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI 181
           + + +LP ++A+   +    G + +++  G  L      +    +  + +L   +  + +
Sbjct: 31  VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90

Query: 182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL 241
           +  L+ +A       LL+ R   G+  GV       + ++ VP  +R R+LALV++G+ L
Sbjct: 91  SNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL 148

Query: 242 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS 301
            +V G+    FL   FGW + F +   L  +     L      P  +           + 
Sbjct: 149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALL---ALLLLWKLLPPSEISGSLPGPLRTLL 205

Query: 302 SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL 361
                          +L +P V   +++ F    G F L T++  +   V  F+++   L
Sbjct: 206 R--------------LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL 251

Query: 362 FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM 421
             +   +       LGG +AD    + L           +        LT      SPA+
Sbjct: 252 VLLAFGIAGFIGNLLGGRLADRGPRRALIAAL-------LLLALALLALTFTGA--SPAL 302

Query: 422 AVLCMA 427
           A+  + 
Sbjct: 303 ALALLF 308

Length = 394

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 68/335 (20%), Positives = 120/335 (35%), Gaps = 21/335 (6%)

Query: 96  WEEFPKR--WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL 153
           WE   KR     + L   AF +  M     S   + + ++F  +    GL+ +       
Sbjct: 4   WEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGA 63

Query: 154 LTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL-GLPFLLVVRVFMGIGEGVAM 212
           L ++  G   D  GG+      ++   I       A        LLV+ + +G+      
Sbjct: 64  LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFA 123

Query: 213 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV 272
             M N  S + P  ++  +L +  +G    +V  L  +P +   FG+ +     G    V
Sbjct: 124 VGMPNA-SFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNVAGIYV-V 180

Query: 273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC 332
              +    A     + P+ R            S +P        + S    W L + +F 
Sbjct: 181 ALAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWLLSLLYFA 229

Query: 333 HNWGTFILLT-WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 391
             +G F+  + ++P Y       +   +GL   L  L  A +  LGGW++D +   G  V
Sbjct: 230 -TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRRV 286

Query: 392 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM 426
           T    +  ++     + FLT   H  S  + V   
Sbjct: 287 TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVF 321

Length = 417

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 99  FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIA 158
             +   ++ L F            ++   L +      + A  GL+ S F  G +L  + 
Sbjct: 173 LLRLLLLLALAFFLLSFGYY--GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALL 230

Query: 159 GGIWADTVGGK-AVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 217
           GG+ +D +G +  +L  G++  ++   L  +A  L L  + ++   +G G G A PA+  
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL--LLGFGLGFAFPALLT 288

Query: 218 ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW 277
           + S+  P   R  +  L  +   LG   G   +  L+   G+  VF    +L  +   + 
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348

Query: 278 L 278
           L
Sbjct: 349 L 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD 164
           +++  F  F+   +DR+N+  A L M  +   +    GL  + F+  Y++  I   I   
Sbjct: 9   LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA 68

Query: 165 TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP 224
            +G +  +   +V W IA+  T  A   G   L ++R+ +GI E   +P +   L+ W P
Sbjct: 69  IIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 225 VAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
              R+R+ AL    M +    GL  S +++
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYIL 156

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR 201
           GL+ + +  G L+     G+  D  G K VL  G+  + ++TA+  +++ + +  L++ R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV--LIIAR 58

Query: 202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS 261
              G G   A+ A   +++   P  ER  +L L+ +G+ LG + G      L    GW +
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 262 VFYSFGSLGTVWF 274
            F     L    F
Sbjct: 119 PFLFLAILALAAF 131

Length = 141

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 26/262 (9%)

Query: 160 GIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIG-EGVAMPAMNNI 218
           G+ AD  G K ++ + +V +S+ T L+ +A+  G+  L + R  +G+G  G    A    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131

Query: 219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
           +  W P   +S++ A + SG  +G++    F P     +GW + F  F  L  V   +++
Sbjct: 132 VESW-PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF--FVGLLPVLLVIYI 188

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP------VWALIVSHFC 332
                   E  +   A+         S   V ++    + ++        V+ ++ S F 
Sbjct: 189 RA---RAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245

Query: 333 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK--GLS 390
            NW  F LL   PTY    L     ++G+   L  +T A    + G I   L +   GL 
Sbjct: 246 ANWPIFGLL---PTY----LAGEGFDTGVVSNL--MTAAAFGTVLGNIVWGLCADRIGLK 296

Query: 391 VTTVRKIMQSIGFLGPAFFLTQ 412
            T    ++ S  F+ P F + Q
Sbjct: 297 KTFSIGLLMSFLFIFPLFRIPQ 318

Length = 426

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 3/157 (1%)

Query: 91  SLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFW 150
            LVP W+   +    V+    A LL       +   +         +    GL+      
Sbjct: 191 PLVPAWKLLLRDP--VLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGL 248

Query: 151 GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT-ALTPVAAKLGLPFLLVVRVFMGIGEG 209
              + ++  G  +D +G +  L   ++   +A   L  ++      +LLV  + +G G G
Sbjct: 249 LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAG 308

Query: 210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG 246
           +  PA+N ++S   P  ER  +  L  +   LG   G
Sbjct: 309 LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 16/326 (4%)

Query: 104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWA 163
            + +   +  L  ++  ++ ++ +L  +   +      GL+ S+FF GY +  +  G   
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63

Query: 164 DTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV 223
           D  G + VL  G++ + + T L  +A  +GL  LL++R+  G+G G  +P  + +LS+W 
Sbjct: 64  DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123

Query: 224 PVAERSRSLALVYS--GMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVWLS 279
           P A        + +     LG   G   +  L+     GW + F     LG +   + L 
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183

Query: 280 ------------KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALI 327
                           +  E  +L      L++           +       +  +  L 
Sbjct: 184 LDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLG 243

Query: 328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 387
           ++      G  ILL  +P         +        +L  + +  +  LG  +  +L+  
Sbjct: 244 LALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVD 303

Query: 388 GLSVTTVRKIMQSIGFLGPAFFLTQL 413
            L  +   + +   G L  A  L  L
Sbjct: 304 RLGRSLGLRAILLAGALLLAILLLVL 329

Length = 338

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 59/329 (17%), Positives = 108/329 (32%), Gaps = 50/329 (15%)

Query: 134 FNWNPATVGLIQSSF-------FWGYLLTQIAG-------GIWADTVGGKAVLGFGVVWW 179
           F ++P  V +I+               +  +AG       G   D  G +      ++  
Sbjct: 18  FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLL 77

Query: 180 SIATALTPVAAKLGLPF--LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYS 237
           +I      +A      +  LL++R+F+GI  G     M  I S + P   +  +L L   
Sbjct: 78  AIPCLWAGLA---VQSYSVLLLLRLFIGIAGGSFASCMPWI-SFFFPKKIQGTALGLAAG 133

Query: 238 GMYLGSVTGLAFSPFLI------------HRFGWPSVFYSFGSL---GTVWFTVWLSKAH 282
              +G        P +I              +GW  V    G L     + F V      
Sbjct: 134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG----- 188

Query: 283 SSPAEDPQLRPAEKKL-IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 341
              A+ P  +PA  KL    +  S           +      W L + +    +G+F+ +
Sbjct: 189 ---ADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSV-TFGSFLGV 244

Query: 342 TWM-PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 400
           + +   ++      +   +G +  L  L  + +  LGG I+D L      + +   +   
Sbjct: 245 SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMG 304

Query: 401 IGFLGPAFFLTQLSHVDSPAMAVLCMACS 429
                    L  +S +      VL +A  
Sbjct: 305 AF----LVVLGLVSPLSLAVFIVLFVALF 329

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 105 IVVLCFSAFLLCNMDRVNMSIAILP--MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
           IV+  F ++L      + + +A+LP  +  +  ++    GL+ S  +   LL++   G +
Sbjct: 20  IVMFTFISYL-----TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRY 74

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAA------KLGLPFLLVVRVFMGIGEGVA 211
           ADT+G K  + FG+   +++  L  +A        L L  LL+ R+ +GIGE +A
Sbjct: 75  ADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129

Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	483
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.98
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.98
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.97
PRK10504	471	putative transporter; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.96
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
PRK12382	392	putative transporter; Provisional	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
KOG2533	495	consensus Permease of the major facilitator superf	99.95
PRK10054	395	putative transporter; Provisional	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
TIGR00898	505	2A0119 cation transport protein.	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.93
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
PRK09528	420	lacY galactoside permease; Reviewed	99.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.91
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.89
KOG0569	485	consensus Permease of the major facilitator superf	99.89
KOG0254	513	consensus Predicted transporter (major facilitator	99.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.88
KOG2615	451	consensus Permease of the major facilitator superf	99.88
PTZ00207	591	hypothetical protein; Provisional	99.87
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.85
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.85
PRK09669	444	putative symporter YagG; Provisional	99.84
PF13347	428	MFS_2: MFS/sugar transport protein	99.83
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.83
KOG2563	480	consensus Permease of the major facilitator superf	99.82
PRK10429	473	melibiose:sodium symporter; Provisional	99.82
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.81
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.81
PRK11462	460	putative transporter; Provisional	99.81
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.8
COG2211	467	MelB Na+/melibiose symporter and related transport	99.8
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.8
PRK09848	448	glucuronide transporter; Provisional	99.79
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.78
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.76
KOG3626	735	consensus Organic anion transporter [Secondary met	99.74
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.74
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.71
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.69
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.68
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.66
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.65
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.64
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.61
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
PRK05122	399	major facilitator superfamily transporter; Provisi	99.59
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.59
PRK10642	490	proline/glycine betaine transporter; Provisional	99.59
PRK15011	393	sugar efflux transporter B; Provisional	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.59
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.59
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.58
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.58
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.57
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.56
PRK09874	408	drug efflux system protein MdtG; Provisional	99.56
PRK12382	392	putative transporter; Provisional	99.55
PRK10489	417	enterobactin exporter EntS; Provisional	99.54
TIGR00893	399	2A0114 d-galactonate transporter.	99.54
PRK03545	390	putative arabinose transporter; Provisional	99.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.53
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.52
PRK03633	381	putative MFS family transporter protein; Provision	99.52
PRK03699	394	putative transporter; Provisional	99.52
PRK09705	393	cynX putative cyanate transporter; Provisional	99.51
PRK11663	434	regulatory protein UhpC; Provisional	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.5
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.49
TIGR00891	405	2A0112 putative sialic acid transporter.	99.49
PRK03893	496	putative sialic acid transporter; Provisional	99.49
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.49
PRK11010	491	ampG muropeptide transporter; Validated	99.47
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.46
PRK12307	426	putative sialic acid transporter; Provisional	99.44
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.44
PRK09952	438	shikimate transporter; Provisional	99.43
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.41
KOG0569	485	consensus Permease of the major facilitator superf	99.4
TIGR00895	398	2A0115 benzoate transport.	99.39
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.39
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.38
PRK15075	434	citrate-proton symporter; Provisional	99.38
PRK10504	471	putative transporter; Provisional	99.38
TIGR00900	365	2A0121 H+ Antiporter protein.	99.37
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.37
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.35
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.35
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.35
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.34
PRK10054	395	putative transporter; Provisional	99.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.34
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.33
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.33
TIGR00898	505	2A0119 cation transport protein.	99.33
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.32
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.31
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.31
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.31
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.3
PRK10091	382	MFS transport protein AraJ; Provisional	99.29
PRK11902	402	ampG muropeptide transporter; Reviewed	99.29
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.27
PLN00028	476	nitrate transmembrane transporter; Provisional	99.26
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.26
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.25
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.24
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.23
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.23
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.23
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.22
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.2
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.2
PRK09848	448	glucuronide transporter; Provisional	99.19
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.16
PRK10133	438	L-fucose transporter; Provisional	99.14
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.13
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.13
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.12
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.1
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.1
PRK10429	473	melibiose:sodium symporter; Provisional	99.1
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.1
PRK11043	401	putative transporter; Provisional	99.09
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.08
PRK09669	444	putative symporter YagG; Provisional	99.07
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.07
KOG3762	618	consensus Predicted transporter [General function	99.07
PF13347	428	MFS_2: MFS/sugar transport protein	99.06
KOG0637	498	consensus Sucrose transporter and related proteins	99.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
TIGR00901	356	2A0125 AmpG-related permease.	99.03
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.97
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.96
KOG2532	466	consensus Permease of the major facilitator superf	98.93
COG2211	467	MelB Na+/melibiose symporter and related transport	98.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.87
PRK11462	460	putative transporter; Provisional	98.86
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.82
COG0477	338	ProP Permeases of the major facilitator superfamil	98.81
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.8
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.77
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.74
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.73
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.73
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.69
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.67
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.65
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.64
KOG3810	433	consensus Micronutrient transporters (folate trans	98.6
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.59
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.57
KOG0254	513	consensus Predicted transporter (major facilitator	98.55
PF12832	77	MFS_1_like: MFS_1 like family	98.48
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.45
KOG2533	495	consensus Permease of the major facilitator superf	98.44
KOG3762	618	consensus Predicted transporter [General function	98.43
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.42
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.38
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.35
KOG2615	451	consensus Permease of the major facilitator superf	98.35
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.29
PTZ00207	591	hypothetical protein; Provisional	98.24
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.24
COG3202	509	ATP/ADP translocase [Energy production and convers	98.18
PF12832	77	MFS_1_like: MFS_1 like family	98.1
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.99
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.86
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.74
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.7
KOG3097	390	consensus Predicted membrane protein [Function unk	97.64
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.59
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.58
KOG2563	480	consensus Permease of the major facilitator superf	97.57
PRK03612	521	spermidine synthase; Provisional	97.57
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.54
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.23
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.22
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.17
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.13
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.05
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.92
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.9
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.88
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.74
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.61
TIGR00805	633	oat sodium-independent organic anion transporter.	96.53
KOG3880	409	consensus Predicted small molecule transporter inv	96.48
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.35
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.28
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.11
KOG3626	735	consensus Organic anion transporter [Secondary met	95.9
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	95.85
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.75
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.65
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	91.95
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	91.44
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	90.97
KOG3880	409	consensus Predicted small molecule transporter inv	90.22
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	89.99
KOG0637	498	consensus Sucrose transporter and related proteins	89.98
KOG3810	433	consensus Micronutrient transporters (folate trans	89.82
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	89.68
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.78
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	86.28
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	85.41
PRK03612	521	spermidine synthase; Provisional	84.94
COG0477	338	ProP Permeases of the major facilitator superfamil	84.17
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	83.16
PF02535	317	Zip: ZIP Zinc transporter; InterPro: IPR003689 The	81.33

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-35  Score=270.55  Aligned_cols=352  Identities=16%  Similarity=0.212  Sum_probs=280.7

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      ++.|+.++..+++++...++.+..++...|.+.++.++|.+|+|++.+++.+.+.++..+.|.++||.+.|..+..++++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhH--HHhhhc
Q 011529          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHR  256 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~  256 (483)
                      .++..+++++++  +.+.+.++.++.|+++|..+|++...+.+|++++|||+..++++...++|+.+.|++.  +++..+
T Consensus       104 sai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         104 SAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999  9999999999999999999999999999999999999999999999999999999999  899988


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHH-HhhhcccCCCC-----CcccchhhhhcChhHHHHHHHH
Q 011529          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK-LIVSSCASKEP-----VKTIPWGLILSKPPVWALIVSH  330 (483)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  330 (483)
                      .+||..|++.++++++..++.++..+++|++..-.+.++.. +..+..+++++     .+..-++.+++||.+|.+.+..
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~  261 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALAN  261 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999999998888888764332222111 11110011111     1223356688999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Q 011529          331 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL  410 (483)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (483)
                      ++....-+++..|.|.|+.|..|++...+....+.+-++++.|.+++|+++||+.+.|..      ....+..++..+.+
T Consensus       262 vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~------p~~~i~~~~i~~~~  335 (448)
T COG2271         262 VFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG------PMALIFMLLITASL  335 (448)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc------hHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998644322      22222222222222


Q ss_pred             HHhh--ccchhHHH-HHHHHHhhhhhhhhhchhhhhHhhhccC-cceeeeeee
Q 011529          411 TQLS--HVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPR-YSVSIISIN  459 (483)
Q Consensus       411 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~  459 (483)
                      ....  ...+.++. +.++.++....+.. -..-....|..|+ ..|++.|+.
T Consensus       336 ~~~w~~~~~~~~l~~~~l~~iGf~IyGPq-mLiGl~a~e~~pK~AaGtA~Gf~  387 (448)
T COG2271         336 VLYWLAPNGSYLLDAILLFIIGFLIYGPQ-MLIGLAAAEFVPKKAAGTATGFV  387 (448)
T ss_pred             HHHHcCCCccHHHHHHHHHHHHHHHhhHH-HHHHHHHhccccHhhccchhchh
Confidence            2222  22223333 33334444444333 3344444566665 478888743

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-33  Score=263.21  Aligned_cols=333  Identities=20%  Similarity=0.276  Sum_probs=270.5

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      +..+..+..+.++.|..+.........+|.+.+|+|+|..+.|++.++|.++..++.|+...+.||+.||++++....++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34456677778888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      .++.+++++++  |++.+++.|++.|+..|..++...++..++.|+++|++++++...+..++.++|.+++.++-+.+||
T Consensus        89 i~~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814          89 IVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (483)
                      |.+|++.+.+.++..+..+...|  |++.++..+.+               ..+..+++|+|.++...+..++...+.+.
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~---------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~  229 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSEISGSLPGP---------------LRTLLRLLRRPGVLLGLLATFLFMTGHFA  229 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcc---------------hhHHHHHhcCchHHHHHHHHHHHHcchhh
Confidence            99999999999999888888877  11111111111               01123578999999999999999999999


Q ss_pred             HHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchh
Q 011529          340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  419 (483)
Q Consensus       340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (483)
                      ..+|+.+++++..|++....+++...++++.++|..++|++.|| +.++        .+.....+.....+.+....++.
T Consensus       230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~--------~l~~~~~l~a~~~l~l~~~~~~~  300 (394)
T COG2814         230 LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR--------ALIAALLLLALALLALTFTGASP  300 (394)
T ss_pred             hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh--------HHHHHHHHHHHHHHHHHHhcchH
Confidence            99999999999999999999999999999999999999999999 5552        22222122222222222333444


Q ss_pred             HHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeeee
Q 011529          420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINI  460 (483)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  460 (483)
                      +..+....+.++..............+..|+.++.+.+++.
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~  341 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNV  341 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHH
Confidence            44444444433333333444445555555677777766443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=2.1e-32  Score=267.93  Aligned_cols=286  Identities=21%  Similarity=0.318  Sum_probs=236.4

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      +.+|..+..+++.+++.+++....+...|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            34677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh----
Q 011529          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----  255 (483)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----  255 (483)
                      .++.+++++++  +++.+++.|++.|++.+...+....++.|++|+++|++++++++....+|..+++.+++++.+    
T Consensus        84 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        84 GIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999988  999999999999999999999999999999999999999999999999999999999998864    


Q ss_pred             --ccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhc---cc-----CC---CCCc---ccchhhhhc
Q 011529          256 --RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSS---CA-----SK---EPVK---TIPWGLILS  319 (483)
Q Consensus       256 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~---~~~~---~~~~~~~~~  319 (483)
                        ..|||+.|++.++..++..++.++..+|+|++.+...+++++...+.   ..     .+   ++.+   ...++.++ 
T Consensus       162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-  240 (412)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-
Confidence              36999999998888877666666666666644321112111111000   00     00   0000   11234443 


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQV-LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      +|.+|...+..++.....+.+.+|+|.++++. .|++..+++.+.....++.+++.++.|+++||+++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~  310 (412)
T TIGR02332       241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK  310 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence            67888888888888888999999999999882 3678888899999999999999999999999998763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=6.7e-32  Score=263.35  Aligned_cols=329  Identities=16%  Similarity=0.190  Sum_probs=247.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      ++|..+..+.++.+..........+.+|.+.+++|.|+.++|++.+.+.++..+++++.|++.||+|||+++..+.++.+
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34544555555444444444455667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCch
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  260 (483)
                      ++++.+.+++  +++.+++.|+++|++.+...+...+++.|++|+++|++++|+...+..+|..++|++++.+.++.|||
T Consensus        86 ~~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         86 ASHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            9999999998  99999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011529          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (483)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (483)
                      +.|++.+++.++..+..+...|+.+++++   +.                ..+.++.+|+|.++...+..++........
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPSEHS---GS----------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTA  224 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCc---ch----------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            99999988887766555554444322111   00                112456788998887776666666666667


Q ss_pred             HHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 011529          341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA  420 (483)
Q Consensus       341 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (483)
                      ..+++.++++..|++..+.+.+.+...++.++++++.+++.||+++|.        ......+........ ....++.+
T Consensus       225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~l-~~~~~~~~  295 (390)
T PRK03545        225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF--------LLIAIALLLVCLLLL-LPAANSEW  295 (390)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH--------HHHHHHHHHHHHHHH-HHHhchHH
Confidence            788888988878999999999999999999999999999999998662        111111111111111 11223333


Q ss_pred             HHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeee
Q 011529          421 MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN  459 (483)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  459 (483)
                      ..+.+..+.+.......+.......+..|+.+++++|..
T Consensus       296 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  334 (390)
T PRK03545        296 HLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALF  334 (390)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHH
Confidence            333333222222233334455666677778888877733

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=7.9e-32  Score=269.03  Aligned_cols=362  Identities=31%  Similarity=0.526  Sum_probs=276.9

Q ss_pred             cCChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhh----------------------hcCCChhhHHHHHHHHHHHHHHH
Q 011529           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSA----------------------EFNWNPATVGLIQSSFFWGYLLT  155 (483)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~g~~~~~~~~~~~~~  155 (483)
                      ..+.+|.+..+++++..+.+.++..++...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            45667888888888899999999999988887766                      78999999999999999999999


Q ss_pred             HhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHH
Q 011529          156 QIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV  235 (483)
Q Consensus       156 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  235 (483)
                      +++.|+++||+|+|+++..+.++.+++.+++.+....+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999888887765543226788999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHhhHHHhhhcc-CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCC--CCCccc
Q 011529          236 YSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK--EPVKTI  312 (483)
Q Consensus       236 ~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  312 (483)
                      ..+..+|.+++|.+++.+.+.. +||+.|++.+++.++..++++...+++|++++..++++++...+..+.+  +.....
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSL  252 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCC
Confidence            9999999999999999999884 9999999999888877777776666665544333333322222111111  112244


Q ss_pred             chhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011529          313 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVT  392 (483)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~  392 (483)
                      +++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+.++..++..++.+++.++.|++.||+++|+....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~  332 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL  332 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            68899999999999999999999999999999999999899999999999999999999999999999999987654332


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeee
Q 011529          393 T-VRKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN  459 (483)
Q Consensus       393 ~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  459 (483)
                      . .++....++..+.......... ....+..+.++.++.+......+.......+..|+..|.+.|+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  401 (465)
T TIGR00894       333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGIT  401 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHH
Confidence            2 1222222222222222211111 22333333344444444444444455556677788888888744

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.6e-32  Score=261.27  Aligned_cols=341  Identities=40%  Similarity=0.745  Sum_probs=301.4

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhc
Q 011529          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (483)
Q Consensus       131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (483)
                      ..+++++..+.+++.+.+..|+++++++.|+++||+|.|+++..+.++.++++++..++...+++.+++.|+++|++.+.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            34688999999999999999999999999999999999999999999999999999888766778889999999999999


Q ss_pred             chhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc-cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 011529          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP  289 (483)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (483)
                      .+|+...+..+|.|++||++..++...+..+|.+++-+++|++.+. +||+..|++.+++.++..++++.+..|+|.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999988887


Q ss_pred             CCChhhHHHhhhcccCCCCC--cccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHH
Q 011529          290 QLRPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW  367 (483)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  367 (483)
                      ...++|.+.+.+.+.+++..  ...||+++++++.+|...+..++...+.+.+.++.|.|+++.+|++..+.|++.++..
T Consensus       225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~  304 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPF  304 (466)
T ss_pred             CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHH
Confidence            77777777666655544443  4789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHhhhhhhhhhchhhhhHh
Q 011529          368 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQ  445 (483)
Q Consensus       368 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (483)
                      +.+.+..+++|.++||..+|.+.....++..-.++..+.++.+..+...+  ..+..+.++.+..+..+...+.......
T Consensus       305 l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~  384 (466)
T KOG2532|consen  305 LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ  384 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh
Confidence            99999999999999999887777888889999999988888888777655  4445667777777777788888888887


Q ss_pred             hhccCcceeeeeeeec--CCCCceeEEe
Q 011529          446 DIAPRYSVSIISINIL--RAPGSHCILC  471 (483)
Q Consensus       446 ~~~~~~~g~~~g~~~~--~~~g~~~~~~  471 (483)
                      +..|++.+..+|+.+.  ...|+..|..
T Consensus       385 ~~apq~a~~l~g~~~~~~~~~~~~~P~~  412 (466)
T KOG2532|consen  385 DIAPQHAGFVMGIINFVGALAGFIAPLL  412 (466)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8789999998885433  3444444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.3e-31  Score=264.61  Aligned_cols=282  Identities=17%  Similarity=0.236  Sum_probs=228.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (483)
                      ++..+...++..+..+++...++..+|.+.+++|+|..+.|++.+.+.++..+++++.|++.||+|||+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            44566667778888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchH
Q 011529          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  261 (483)
                      +.+++.+.+  +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|..++|.+.+++.+.+|||+
T Consensus       101 ~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~  178 (434)
T PRK11663        101 INILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY  178 (434)
T ss_pred             HHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            999998888  899999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCC-hhhHHHhhhc-cc-CCCCCcccc-h-hhhhcChhHHHHHHHHHHHHHH
Q 011529          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR-PAEKKLIVSS-CA-SKEPVKTIP-W-GLILSKPPVWALIVSHFCHNWG  336 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~  336 (483)
                      .|++.+++.++..+...+..+++++...... .+.++...+. .+ ..++....+ + +..++++.+|...+..++....
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVV  258 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHH
Confidence            9999887776655544444454433211000 0000000000 00 000000111 1 1256788899888888877778


Q ss_pred             HHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011529          337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV  385 (483)
Q Consensus       337 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g  385 (483)
                      ...+..|+|.|+++.+|++..+++...+...+++++++++.|++.||+.
T Consensus       259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~  307 (434)
T PRK11663        259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF  307 (434)
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence            8888899999998878999999999999999999999999999999994

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=3.5e-31  Score=265.51  Aligned_cols=285  Identities=15%  Similarity=0.167  Sum_probs=238.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      ++|..+..++++.++...+.+.++..+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhc-CCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      ++.+++++++  +++.++++|+++|++.+...+.....+.+.+ |+++|++++|+......+|..+||.+++++.++.||
T Consensus        83 ~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            9999999998  9999999999999999988888888887776 678999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CChhhHH-----------Hhhhc-------------------------
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-LRPAEKK-----------LIVSS-------------------------  302 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~-------------------------  302 (483)
                      |+.|++...+.++..++..+..|++++++.+ .+.....           ...+.                         
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999998887777766666666654332211 1110000           00000                         


Q ss_pred             -ccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHH
Q 011529          303 -CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIA  381 (483)
Q Consensus       303 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~  381 (483)
                       .+...+.+..+ .+++|+|.++...+..++......+...++|.|+++.+|+++.++|+......++..++.++.|++.
T Consensus       241 ~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00001111222 2578899988888888888888888888999999999999999999999999999999999999999


Q ss_pred             HHHhhcC
Q 011529          382 DTLVSKG  388 (483)
Q Consensus       382 dr~g~~~  388 (483)
                      ||+++|+
T Consensus       320 ~r~g~~~  326 (495)
T PRK14995        320 SRLGLRL  326 (495)
T ss_pred             HHcCchH
Confidence            9999874

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=3.7e-32  Score=271.04  Aligned_cols=286  Identities=17%  Similarity=0.187  Sum_probs=231.6

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (483)
                      .+..+..+++++++.+.++..+++..|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|+|+++..+.++.++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            55667788888889999999999999999999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHhhh-----hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          182 ATALTPV-----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       182 ~~~~~~~-----~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      +.+.+++     ++  +++.+++.|++.|++.+...+...+++.+++|+++|++++|+.+.+..+|.++++.+..++.+.
T Consensus       107 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        107 CMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            7665554     45  8999999999999999999999999999999999999999999999999999999988777665


Q ss_pred             c---CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhH-HHh--hhcccC-CCCCc-ccc-hhhhhcChhHHHHH
Q 011529          257 F---GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEK-KLI--VSSCAS-KEPVK-TIP-WGLILSKPPVWALI  327 (483)
Q Consensus       257 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~  327 (483)
                      .   +|+..|.+.+++.++..++.++..++.|++.+..+.++. +..  .++... +++.. ... .+..+++|.+|...
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  264 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC  264 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence            3   599988888888777666666665555443221111110 000  000000 00000 011 22368999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      +..++......+...|+|.|+++.+|++..++++......++.+++.++.|+++||+++|+.
T Consensus       265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            99888888888889999999998899999999999999999999999999999999998853

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=7.6e-31  Score=251.72  Aligned_cols=319  Identities=13%  Similarity=0.076  Sum_probs=228.2

Q ss_pred             hhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHH
Q 011529          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (483)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (483)
                      ......+++.+|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+.....+  +++.
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~   81 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYEW   81 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHHH
Confidence            44566788899999999999999999999999999999999999999999999877655555544433223335  8999


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  276 (483)
                      +++.|++.|++.+. .......+.|++|+++|++++++.+.+..+|.++++.+++++.+++|||+.|++.+++.++..++
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            99999999999985 45666667999999999999999999999999999999999999999999999988888877777


Q ss_pred             HHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc
Q 011529          277 WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNL  356 (483)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  356 (483)
                      .++..||+|+.+++..+. ++            ...++++++++|.+|...+..++.....+++.+|+|.|+++ .|++.
T Consensus       161 ~~~~lp~~p~~~~~~~~~-~~------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~  226 (368)
T TIGR00903       161 VLAALPALPFQAAEGFGF-KD------------AVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLED  226 (368)
T ss_pred             HHHHcCCCCCCCCCCcch-HH------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCh
Confidence            777777655432211100 00            01246788999999999999999999999999999999987 68876


Q ss_pred             chhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhh
Q 011529          357 TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFS  436 (483)
Q Consensus       357 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (483)
                      . .+....+..+.+.++   .+++.||..||+...     .......+..+...............+.+..+...+....
T Consensus       227 ~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  297 (368)
T TIGR00903       227 I-AGDAVALAILAGLIG---VAVIPDRVARAGLRS-----IYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPA  297 (368)
T ss_pred             H-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHH-----HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhh
Confidence            4 555555555544444   578888876543111     1111111111111112122222333333333344444444


Q ss_pred             hchhhhhHhhhccC-cceeeeeeeec
Q 011529          437 QSGLYSNHQDIAPR-YSVSIISINIL  461 (483)
Q Consensus       437 ~~~~~~~~~~~~~~-~~g~~~g~~~~  461 (483)
                      .+.......|..|+ .||++.|+.++
T Consensus       298 ~~~~~~~~~~~~p~~~rgt~~G~~~~  323 (368)
T TIGR00903       298 YAIIMDWIGKFCDKELHGKAAGAIGF  323 (368)
T ss_pred             HHHHHHHHHHhcchhhcCcccchhhH
Confidence            45566777787765 68999985543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.8e-31  Score=261.10  Aligned_cols=343  Identities=26%  Similarity=0.423  Sum_probs=261.6

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcc
Q 011529          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL  192 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  192 (483)
                      +++.+++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++.+  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--
Confidence            345667778888899999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHH
Q 011529          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (483)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  272 (483)
                      +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+|++.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHhccCCCCCCCCCChhhHHHhhhc------ccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          273 WFTVWLSKAHSSPAEDPQLRPAEKKLIVSS------CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                      ..+..+...++++++++...+++++...+.      .+++++.+....++.+++|+++...+..++.......+..+.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT  240 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            766666555555443322222221111110      11112223345677889999999999999999999999999999


Q ss_pred             HHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011529          347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM  426 (483)
Q Consensus       347 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (483)
                      |+++.+|.++.+.+++.+...++.+++.++.|++.||+++|+....... .....+.+............+..+..+...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFAR-KTAIIAGLVLSLLMFATNYVNIPYAALALV  319 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            9999899999999999999999999999999999999998862221111 111111111122222222222333333333


Q ss_pred             HHhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          427 ACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      .++.+..+ ..+.......+..| +++|+++|+.
T Consensus       320 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~  352 (399)
T TIGR00893       320 ALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLI  352 (399)
T ss_pred             HHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHH
Confidence            44443333 45566677777654 5688888744

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=2.1e-30  Score=258.20  Aligned_cols=347  Identities=14%  Similarity=0.103  Sum_probs=244.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      ++++.+.......+..........+.+|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34455555666666677777778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-----
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-----  255 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  255 (483)
                      ++.++.++++  +++.+++.|++.|++.+.. .....++.+++|+++|++++|+.+...++|..+++.+.+.+..     
T Consensus       113 ~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~  189 (476)
T PLN00028        113 PAVFCMSLVS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA  189 (476)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998888888  8999999999999988764 4456788999999999999999988888888777766654432     


Q ss_pred             ----ccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHH
Q 011529          256 ----RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (483)
Q Consensus       256 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (483)
                          ..|||+.|++.+++.++..+..++..++.|+...  ++.++     +.+.++......+++.++++++|.+.+..+
T Consensus       190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (476)
T PLN00028        190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY--RELKK-----SGTMPKDSFSKVLRYGVTNYRTWILALTYG  262 (476)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch--hhHHh-----cCccccccHHHHHHHHHcCchhHHHHHHHH
Confidence                2589999999998888776666665544432210  00000     000001111123556678899888877777


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 011529          332 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT  411 (483)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (483)
                      +.......+..++|.|+.+.+|++..+++.+.++..++.+++++++|+++||+++|+....  ++........+.+....
T Consensus       263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~--r~~~~~~~~~l~~i~~~  340 (476)
T PLN00028        263 YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRG--RLWALWIVQTLGGVFCI  340 (476)
T ss_pred             HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcch--hHHHHHHHHHHHHHHHH
Confidence            6666667778899999988789999999999999999999999999999999997642211  12222222222222222


Q ss_pred             HhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeee
Q 011529          412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN  459 (483)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  459 (483)
                      .....++....+..+.+.........+.......+..|+++|++.|+.
T Consensus       341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  388 (476)
T PLN00028        341 WLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLT  388 (476)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhh
Confidence            222222222222222222222222233344445566778888888854

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=6.2e-30  Score=249.03  Aligned_cols=263  Identities=16%  Similarity=0.218  Sum_probs=215.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (483)
                      .|+.+..+..+.+..........+.+|.+.+++|.++.++++..+++.++..+++++.|++.||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            55555555555555555555566678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchH
Q 011529          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  261 (483)
                      +.+++.+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.....++|..++|.+++.+.+.+|||+
T Consensus        98 ~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         98 SCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            999988887  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 011529          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (483)
                      .|++.+++.++..+......|+++++++   +.                ..+.++.+|+|.++...+..++.........
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~~~---~~----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  236 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGEPS---HQ----------------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFF  236 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCcccc---cc----------------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887766655444443443221110   00                1123467889999887776666666666666


Q ss_pred             HhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011529          342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV  385 (483)
Q Consensus       342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g  385 (483)
                      +++++++.+++|+++.+.+.+....+++.+++.++.+++.||.+
T Consensus       237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77644444458999999999999999999999999999999954

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=2.2e-30  Score=264.43  Aligned_cols=185  Identities=15%  Similarity=0.210  Sum_probs=162.0

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      .+.+|.++.++.++.+..+++...++..+|.+.+++|++..+.+++.+++.++.+++.+++|+++||+|||++++++.++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            35677777888888888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc--
Q 011529          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--  256 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--  256 (483)
                      .+++.+++++++  +++.++++|++.|++.++..+...+++.|++|+++|++.+++.+.+..+|.++++.++..+...  
T Consensus       242 ~~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       242 NGFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999888  8999999999999999999999999999999999999999999999999999999888776643  


Q ss_pred             -----------cCchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 011529          257 -----------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (483)
Q Consensus       257 -----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (483)
                                 .+||+.+++.++..++.. +..++.|+.|+
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPr  359 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPR  359 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHH
Confidence                       358888887776655544 34444566543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.2e-30  Score=252.34  Aligned_cols=336  Identities=21%  Similarity=0.252  Sum_probs=249.5

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      .+++|..+.++++..++.+++....+...|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            34788888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ..++.+++.+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        90 ~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         90 FGLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            988888888888  899999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhc---ChhHHHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS---KPPVWALIVSHFCHNW  335 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  335 (483)
                      |++.|++.+++.++..+......+++++..++..+++.+             ....+..++   .+..+...+..++...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-------------APVLRALFGEGRATATLLLWISYFFTLI  234 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-------------hhhHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            999999888776666555555555543321111000000             001111222   2233444444555555


Q ss_pred             HHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH  415 (483)
Q Consensus       336 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (483)
                      ..+....+.|.++++ .|+++.+.+.+.+...++.++++++.|++.||+++|+.       ...  ..+.....+.....
T Consensus       235 ~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------~~~--~~~~~~~~~~~~~~  304 (406)
T PRK11551        235 VLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV-------VLL--IYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHH--HHHHHHHHHHHHHh
Confidence            667778889999988 79999999999999999999999999999999998742       111  11111112222222


Q ss_pred             cchhHHHHHHHHHhhhhhhhhhchhhhhHhhhc-cCcceeeeeee
Q 011529          416 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSVSIISIN  459 (483)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~  459 (483)
                      .+..+...+...+.+.......+.......+.. ++++|++.|+.
T Consensus       305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  349 (406)
T PRK11551        305 APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAA  349 (406)
T ss_pred             cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHH
Confidence            223333322222222222333444556666654 45688888744

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=7.9e-30  Score=248.68  Aligned_cols=267  Identities=15%  Similarity=0.226  Sum_probs=227.6

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (483)
                      +..+.+..++.......+.+.+|.+.+++|.++.+.+++.+++.++..+++++.|++.||+|||+++..+.++.+++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   86 (385)
T TIGR00710         7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG   86 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence            33444445566677788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHH
Q 011529          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (483)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  265 (483)
                      +.+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+|++.+++
T Consensus        87 ~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  164 (385)
T TIGR00710        87 LALSN--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF  164 (385)
T ss_pred             HHHHc--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            88888  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 011529          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (483)
                      .+++.++..+..+...+++++++++.+.++.              ...+++.+++|.++...+...+..........+.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (385)
T TIGR00710       165 LSLAGILLSALIFFILPETLPYEARIQISTY--------------FETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAP  230 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcccCCHHHH--------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcCh
Confidence            8887777666655555544332221111110              12355778899998888777777777788888899


Q ss_pred             HHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       346 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      .++++.+|.++.+.+.+.....++.+++.++.+++.||+++|+
T Consensus       231 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  273 (385)
T TIGR00710       231 FVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS  273 (385)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            9999889999999999999999999999999999999999874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.3e-29  Score=250.39  Aligned_cols=269  Identities=14%  Similarity=0.142  Sum_probs=209.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcC---CChhhHH---HHHHHHHHHHHHHHhhHHHHHhhcCCchHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFN---WNPATVG---LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF  174 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g---~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  174 (483)
                      +++..+...+++.++.+++...++...|.+.++++   .+..+.+   .+.+...++..++++++|+++||+|||+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45556667778889999999999999999999984   5555443   44455556666999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcccH--------HHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHH
Q 011529          175 GVVWWSIATALTPVAAKLGL--------PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG  246 (483)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  246 (483)
                      +.++++++.+++++++  ++        ..++++|+++|++.|..++...+++.|++|+++|+++.++.+.+...|.+++
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         99 SVCMMCFGSLVIACLP--GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999998887  54        3688999999999999999999999999999999999999998888888888


Q ss_pred             HhhHHHhh--------hccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhh
Q 011529          247 LAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL  318 (483)
Q Consensus       247 ~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (483)
                      +.+...+.        +.+|||++|++.++..++... .....+|.++.       +++.    .     .+..++++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~-------~~~~----~-----~~~~~~~~l~  239 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ-------ETRA----L-----KEAGSLKGLW  239 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH-------HHhh----h-----cccccHHHHH
Confidence            87665543        257999999987776655432 22222222110       0000    0     0123577888


Q ss_pred             cChhHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          319 SKPPVWALIVSHFCH-NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      |+++.+...+...+. ....+.+.+|+|.|+++.+|++..+.+...++..+...++..+.|+++||++||+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~  310 (432)
T PRK10406        240 RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT  310 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            998888766655443 6667788899999998888999988888888888888888999999999999884

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.98  E-value=1.3e-30  Score=239.61  Aligned_cols=344  Identities=17%  Similarity=0.180  Sum_probs=275.0

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      ++.+++.+.+..+...+.+..+.++++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            34456677777888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhc-ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc
Q 011529          179 WSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (483)
Q Consensus       179 ~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (483)
                      ..+-++..+++.. .++|.+++++++.|++ |..+......+++++|+|++|.++|+.. .+++|..+...++..++...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            9999988887752 2456999999999998 5577888999999999999999999999 99999999999999999988


Q ss_pred             C---chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHH
Q 011529          258 G---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN  334 (483)
Q Consensus       258 g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (483)
                      +   |+....+..+..++..+..++...+.++.+...++...               ..++.++++++.|.+.+.++..+
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------~~~~~v~~~~~~W~lsllY~~tF  231 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------AQLKAVFSNKDTWLLSLLYFATF  231 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------------hHHHHHhcCcchHHHHHHHHHHH
Confidence            8   99999999988888888888887776654222211110               23567889999999999999999


Q ss_pred             HHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          335 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  414 (483)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (483)
                      .++.++..++|.|+++++|.++.+++.+.....+.+.+.+.++|+++||+|.+|...       ........+.......
T Consensus       232 G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~-------~~f~~~~~~~~~l~~~  304 (417)
T COG2223         232 GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL-------AVFVGMALAAALLSLF  304 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH-------HHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999885322       2221111111111111


Q ss_pred             c-----cchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeee-eeecCCCCc
Q 011529          415 H-----VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIIS-INILRAPGS  466 (483)
Q Consensus       415 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g-~~~~~~~g~  466 (483)
                      .     ..........+.....+.+......+..+....+++.|.+.| +......|+
T Consensus       305 ~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGG  362 (417)
T COG2223         305 LTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGG  362 (417)
T ss_pred             ccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccc
Confidence            1     133444444444444455555666777777888888888888 334444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.98  E-value=2.6e-29  Score=246.59  Aligned_cols=275  Identities=14%  Similarity=0.120  Sum_probs=230.4

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      +++.+.....+.+..++..+....+.+.+|.+.+++|.++.+.++..+.+.++..++.++.|+++||+|||+++..+.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            35566677777778888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      .+++.+.+.+.+  +++.+++.|++.|++.+...+...+.+.|.+|+++|.+..++......+|..++|.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999988888888  899999999999999988888899999999999999999999999999999999999999999899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (483)
                      |++.|++.+++.++..+..+...|+++++.++..+. ++            ...+++.++++|.++...+..++......
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-KE------------LGRDYKLVLKNRRFVAGALALGLVSLPLL  232 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-HH------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            999999988888776665555444433221111000 00            02235678899999888877777766666


Q ss_pred             HHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          339 ILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       339 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ....+.|.++++.+|+++.+.+.......++.+++.++.+++.||+++|+
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~  282 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS  282 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            77778899988888999999998888788889999999999999999874

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.98  E-value=1e-30  Score=251.68  Aligned_cols=335  Identities=24%  Similarity=0.420  Sum_probs=250.3

Q ss_pred             HHHHHHHhhhhhhhHHhhh-hhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh
Q 011529          110 FSAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (483)
                      ++..++..++.....+.+| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4566777788888889999 799999999999999999999999999999999999999999999999999999666566


Q ss_pred             hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 011529          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (483)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  268 (483)
                      ++  +.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++
T Consensus        82 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 AS--NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hh--hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            56  7889999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCccc-chhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011529          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTI-PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (483)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (483)
                      +.++..++.....++++++++..++.+++       .+++.+.. .++.++++|.+|...+..++..........+.|.|
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY  232 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence            98888775444444333322222111110       00000112 26677888888766666666667788899999999


Q ss_pred             HHHHhCCC-cchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011529          348 YNQVLHFN-LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM  426 (483)
Q Consensus       348 ~~~~~g~~-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (483)
                      +++.+|++ ..+.+.+..+..+..+++.++.+++.||+++++      ...............+.......+....+...
T Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (352)
T PF07690_consen  233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR------RLLIAILLLILGALGLLLLPFSSSPVWLIIAL  306 (352)
T ss_dssp             CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            88889999 789999999999999999999999999998762      11222222222222222222222333333333


Q ss_pred             HHhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          427 ACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      .+.+...+...+.......+..| +++|++.|+.
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  340 (352)
T PF07690_consen  307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLF  340 (352)
T ss_dssp             HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            33333555556667777777664 6788888743

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=1.7e-29  Score=248.07  Aligned_cols=288  Identities=16%  Similarity=0.192  Sum_probs=220.4

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      .+++|+.+..++++++...++....++..|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            35677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      .+++.+++.+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+
T Consensus        87 ~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        87 FSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999988888  999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             --chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCh-hhHHHhhhcccCCCCCccc-------chhhhh-cCh-hHHHH
Q 011529          259 --WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP-AEKKLIVSSCASKEPVKTI-------PWGLIL-SKP-PVWAL  326 (483)
Q Consensus       259 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~-~~~~~  326 (483)
                        ||+.|++.++..++..+ .....|++++..++.++ +......++...+++..+.       ..+... +++ .+...
T Consensus       165 ~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (405)
T TIGR00891       165 DGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYL  243 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHH
Confidence              99999876655544433 33333333221111000 0000000000000000000       000000 111 12223


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          327 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      .+...+..........++|.|+.+.+|++..+.+.+.+...++.+++.++.+++.||+++|+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~  306 (405)
T TIGR00891       244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA  306 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            333344444555667789999998899999999999999999999999999999999998853

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=3.9e-29  Score=244.01  Aligned_cols=268  Identities=15%  Similarity=0.208  Sum_probs=222.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      ++++..+.+++..++.+.....++..+|.+.+++|+|..+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34566777778888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-ccCc
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGW  259 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~  259 (483)
                      ++.++..+.+  +++.+++.|++.|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+|
T Consensus        84 i~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            9999888888  899999999999999998888899999999999999999999999999999999999888765 5799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (483)
                      |+.|.+.+++.++..++.+..  +.|+.+++.++++           ++.    .+. ..++.++...+..++....++.
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~-----------~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~  223 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFS--EFPALGKHAPKAD-----------KPV----AKE-KWGIGVLFLAIAALLYILAQLT  223 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCccccccCcccc-----------Ccc----ccc-cCChHHHHHHHHHHHHHHHHHH
Confidence            999998887776655544332  2121111100000           000    011 1246677777777777777888


Q ss_pred             HHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      +..|+|.|+++.+|+++.+.+.+.+...++.++++++.+++.||+++|+
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  272 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR  272 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            8999999998889999999999999999999999999999999999885

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=3.2e-29  Score=248.85  Aligned_cols=286  Identities=16%  Similarity=0.235  Sum_probs=218.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      ++|..+..+++.....+.+...++..+|.+.++ |++..+.+++.+...++..+++++.|+++||+|||++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            345555556666666777766777888988888 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhc--ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHH-HHHhhHHHhhhcc
Q 011529          181 IATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV-TGLAFSPFLIHRF  257 (483)
Q Consensus       181 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~  257 (483)
                      ++.+++++.+.  .+++.+++.|++.|++.+...+.....+.+++|+++|++++++.+.+..+|.. .+|+++..+....
T Consensus       105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  184 (452)
T PRK11273        105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN  184 (452)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            88887776531  16778899999999999988888888999999999999999999999999874 4565543443445


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccch-----hhhhcChhHHHHHHHHHH
Q 011529          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPW-----GLILSKPPVWALIVSHFC  332 (483)
Q Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  332 (483)
                      +||+.|++.+++.++..++.++..++++++....++++.+.........++.+..+.     +.++|++.+|...+..++
T Consensus       185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (452)
T PRK11273        185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVF  264 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            999999998887777666665555655433211111110000000000000011111     236789999998888888


Q ss_pred             HHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          333 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      .....+....++|.|+++..|++..+++....+..++.+++.++.|+++||++++
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            8888888899999999998899999999988888999999999999999999543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=1.8e-29  Score=244.49  Aligned_cols=341  Identities=15%  Similarity=0.153  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (483)
                      +..++.+++.......+.+.+|. +.+++|+|+.+.+++.+++.++..+++++.|+++||+|||+.+.++.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34566667777778888999995 99999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh----------
Q 011529          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------  255 (483)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------  255 (483)
                      +.+.+. +++.+++.|++.|++.+ ..+...+++.|++|+++|++++++.....++|..+++.+++.+..          
T Consensus        84 ~~~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        84 AGLAVQ-SYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHhh-hHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            877652 67888999999999865 456678899999999999999999998888888888887776654          


Q ss_pred             ccCchHHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHH
Q 011529          256 RFGWPSVF-YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN  334 (483)
Q Consensus       256 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (483)
                      +.+||+.| +..+++..+..++.+...++.++++++.++.+.+   +.....++......++.+++|+++...+..++..
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK---GARWSVGTGALGDQLKVFRDRHTWILALLYSVTF  238 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc---cccccccchhHHHHHHHHhccchhhHHHHHHHHH
Confidence            34899998 4445555444444444444433222111110000   0000000001114556788999988888877777


Q ss_pred             HHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          335 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  414 (483)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (483)
                      .....+..+.|.|+++.+|+++.+.+.+..+..+..++++++.|++.||+++|+..       ............+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-------~~~~~~~~~~~~~~~~~  311 (366)
T TIGR00886       239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL-------LMSFLGVAMGAFLVVLG  311 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH-------HHHHHHHHHHHHHHHhc
Confidence            77888889999999998999999999999999999999999999999999988432       22222222222222222


Q ss_pred             ccc--hhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeee
Q 011529          415 HVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN  459 (483)
Q Consensus       415 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  459 (483)
                      ...  .....+....+.....+...........+..|+++|++.|+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~  358 (366)
T TIGR00886       312 LVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLV  358 (366)
T ss_pred             CCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHH
Confidence            221  333333333333333333444566666777788899988843

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=5.8e-30  Score=257.46  Aligned_cols=281  Identities=15%  Similarity=0.223  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .+..++++.++..++....++.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45667778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  264 (483)
                      ++.+++  +++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++.++.+||+.|+
T Consensus        83 ~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            999988  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCC-ChhhHH-----------Hhhhcc---------------------------cC
Q 011529          265 SFGSLGTVWFTVWLSKAHSSPAEDPQL-RPAEKK-----------LIVSSC---------------------------AS  305 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~---------------------------~~  305 (483)
                      +.+.+.++..++..+..++++++.++. +.....           ...+..                           +.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            988877776665555555433221111 100000           000000                           00


Q ss_pred             CCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011529          306 KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV  385 (483)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g  385 (483)
                      .++.+..+ .+++++|.++...+..++.....+....++|.|+++.+|+++.+.++......++.+++.++.|++.||++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~  319 (485)
T TIGR00711       241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID  319 (485)
T ss_pred             cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            00111112 24678899988888888888888888899999999989999999999999999999999999999999999


Q ss_pred             hcC
Q 011529          386 SKG  388 (483)
Q Consensus       386 ~~~  388 (483)
                      +|+
T Consensus       320 ~~~  322 (485)
T TIGR00711       320 PRK  322 (485)
T ss_pred             cHH
Confidence            873

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=2.6e-29  Score=242.57  Aligned_cols=263  Identities=13%  Similarity=0.103  Sum_probs=212.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhh-hcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      .++.+.+..++.++......++++..+.+.+ ++|+|..|.+++.++..+++.+++++.|++.||+|.|+++.++.++.+
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            4567888888888889999999999888766 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhh-
Q 011529          181 IATALTPVA-----AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-  254 (483)
Q Consensus       181 ~~~~~~~~~-----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-  254 (483)
                      +.++..+++     +  +++.+++.|++.|++ +..++.....+++++|+++||+++|+....+++|..+++++...+. 
T Consensus       112 i~~~~~~~a~~~~~~--s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~  188 (462)
T PRK15034        112 IPCVWLGIAVQNPNT--PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF  188 (462)
T ss_pred             HHHHHHHHHHcccCC--CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999988876     5  899999999999998 6788999999999999999999999998777777776666554433 


Q ss_pred             ----h-------------ccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhh
Q 011529          255 ----H-------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLI  317 (483)
Q Consensus       255 ----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (483)
                          +             ..+|+.+.++..++.++..++.++..++.++.+.  +                  ..+.+.+
T Consensus       189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~--~------------------~~~~~~v  248 (462)
T PRK15034        189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--S------------------IADQLPV  248 (462)
T ss_pred             HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--C------------------HHHHHHH
Confidence                2             2337777777777777766666665444332110  0                  1124468


Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          318 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      +|+|..|.+.+.+++.+..+.++..++|.|+++.+  +.........+..+...+.++++|+++||+|+++.
T Consensus       249 lk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v  318 (462)
T PRK15034        249 LQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV  318 (462)
T ss_pred             hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence            99999999999999999999999999999998854  33333333444567788899999999999998853

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=3.2e-29  Score=243.47  Aligned_cols=258  Identities=18%  Similarity=0.220  Sum_probs=212.6

Q ss_pred             HhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHH
Q 011529          116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLP  195 (483)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (483)
                      ........++..|.+.+++|+|..++|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.+++  +++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~~   92 (377)
T TIGR00890        15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--SLA   92 (377)
T ss_pred             HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH--HHH
Confidence            333456678889999999999999999999999999999999999999999999999999999999999999998  999


Q ss_pred             HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 011529          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (483)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  275 (483)
                      .+++.|++.|++.+..++.....+.+++| ++|+++.++...+..+|..+++.+.+.+.+..+||+.|++.+++.++..+
T Consensus        93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890        93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888888999985 67999999999999999988777777777888999999999988887776


Q ss_pred             HHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC
Q 011529          276 VWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFN  355 (483)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  355 (483)
                      ..+...++++++..+.+++            .+.+..+.++.++++.++...+..++..........+.+.|.++ +|.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (377)
T TIGR00890       172 LGAFLIGYPPGQLIKTNIE------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLS  238 (377)
T ss_pred             HHHHheecCchhccccCcc------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCC
Confidence            6665554433221111000            00011235577889998888777777666666666777777766 7888


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          356 LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       356 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      ..+.+.+.+...++.++++++.|++.||+++|+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  272 (377)
T TIGR00890       239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT  272 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8889999999999999999999999999998853

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=5.1e-30  Score=249.27  Aligned_cols=274  Identities=18%  Similarity=0.240  Sum_probs=226.1

Q ss_pred             HHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc
Q 011529          112 AFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (483)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (483)
                      .++..+.+...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++.+++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence            4566778888899999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHH-hhHHHhhhccCchHHHHHHHHHH
Q 011529          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL-AFSPFLIHRFGWPSVFYSFGSLG  270 (483)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~g~~~~~~~~~~~~  270 (483)
                       +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++| .+++.+.+..+|++.|++.+++.
T Consensus        82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999 57777777889999999888877


Q ss_pred             HHHHHHHHHhccCCCCCCCCCChhh--HHHh---hhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 011529          271 TVWFTVWLSKAHSSPAEDPQLRPAE--KKLI---VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (483)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (483)
                      ++..+..+...++++++.+..+.++  .++.   .+..+++....+..++.++++|.+|.+.+..++.......+..+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSP  240 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666655555443221111000  0000   0000001111122356678899999988888888888888999999


Q ss_pred             HHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       346 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      .|+++.+|+++.+.+...+...++.+++.++.+++.||..++
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            999998899999999999999999999999999999987544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=1.2e-28  Score=239.60  Aligned_cols=263  Identities=16%  Similarity=0.235  Sum_probs=220.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .+..+....+..........+.+|.+.+++|.+..+.|++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            34555667777778888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  264 (483)
                      ++.+++  +++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..++|.+++.+.+..+||+.|+
T Consensus        84 l~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         84 MFTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             HHHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            999998  999999999999999998888888999999999999999999999999999999999999999899999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (483)
                      +.+++.++..+..+...|+.+++.+.   +.+               ..+ +.+|++..|...+..++..........++
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~~~~~~---~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIRDEAKG---GLR---------------EQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYI  222 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCccccc---CHH---------------HHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887777665555545543221110   000               012 34677777776665555555555566777


Q ss_pred             HHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      +.++++..|+++.+.+++.+..+++.++++++.+++.||+++++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~  266 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR  266 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence            88888778999999999999999999999999999999999875

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=1.7e-28  Score=241.50  Aligned_cols=336  Identities=13%  Similarity=0.161  Sum_probs=242.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (483)
                      ....+..+.+.+++..+......+.+|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44455666777788888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-c-
Q 011529          182 ATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-R-  256 (483)
Q Consensus       182 ~~~~~---~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~-  256 (483)
                      +.+++   .+++  +++.++++|+++|+|.+...+..++++.++.++++|...+++.+....+|..++|.+++.+.. . 
T Consensus       104 ~~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        104 GAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            98775   3456  899999999999999999999999999998777777778999999999999999998876541 0 


Q ss_pred             ------------------------cCchHHHHHHHHHHHHHHHHH-HHhccCCCCCCCCCChhhHHHhhhcccCCCCCcc
Q 011529          257 ------------------------FGWPSVFYSFGSLGTVWFTVW-LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKT  311 (483)
Q Consensus       257 ------------------------~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (483)
                                              .+||++|+....+..+..++. ....|+.+.+ ++ ++ ++          .....
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~-~~-~~-~~----------~~~~~  248 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-NH-SD-AK----------QGSFS  248 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-cc-cc----------ccchh
Confidence                                    245666654443333222222 2222221111 00 00 00          00001


Q ss_pred             cchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 011529          312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY-NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLS  390 (483)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~  390 (483)
                      .+.++++++|.++...+..++....+.....|.+.|+ ++.+|+++.++++......++.++|+++++++.||+++|+..
T Consensus       249 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l  328 (438)
T PRK10133        249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL  328 (438)
T ss_pred             hhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            2355788999988877777888888888888999886 556899999999999999999999999999999999988432


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeeeecC
Q 011529          391 VTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILR  462 (483)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  462 (483)
                      .       ....+......+...  .+.... +..+.+.+.+.+...|...+...+..+++.+.+.++....
T Consensus       329 ~-------~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~~  390 (438)
T PRK10133        329 A-------AYALIAMALCLISAF--AGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMT  390 (438)
T ss_pred             H-------HHHHHHHHHHHHHHH--cCChHH-HHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhHH
Confidence            1       111111111111111  112222 2333444445556677788888887777777777755443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=8.3e-29  Score=241.32  Aligned_cols=264  Identities=16%  Similarity=0.210  Sum_probs=216.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      ..|.....++.+.+.... ....++.+|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~   85 (393)
T PRK09705          7 LNFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA   85 (393)
T ss_pred             hHHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence            344444444444443322 3667889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc-Cc
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GW  259 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~  259 (483)
                      ++.+++++++  +++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +|
T Consensus        86 ~~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w  162 (393)
T PRK09705         86 VGALMRELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW  162 (393)
T ss_pred             HHHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            9999999999  99999999999999999999999999999996 88999999999999999999999999988875 89


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (483)
                      |+.+.+.++..++..+..+...++.++++++    +               ....++.+++++.|...+..++....+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  223 (393)
T PRK09705        163 YQTLAWWALPAVVALFAWWWQSAREVASSHK----T---------------TTTPVRVVFTPRAWTLGVYFGLINGGYAS  223 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccccC----C---------------CcCCcccccCHhHHHHHHHHHHHHHHHHH
Confidence            9988776665544433333322222211100    0               00112356788888887777777788888


Q ss_pred             HHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ...|+|.|+++ +|.+..+++...++.+++.++++++.+++.||+++|+
T Consensus       224 ~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~  271 (393)
T PRK09705        224 LIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK  271 (393)
T ss_pred             HHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence            99999999988 7999999999999999999999999999999999874

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=1.3e-28  Score=243.36  Aligned_cols=280  Identities=15%  Similarity=0.191  Sum_probs=218.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      .++..+..+.+.++..+++.....+.+|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~   94 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            44556777888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCch
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  260 (483)
                      ++.++..+++  +++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+..+||
T Consensus        95 ~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~  172 (426)
T PRK12307         95 VGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR  172 (426)
T ss_pred             HHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence            9999999998  89999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHH---HHHHHH
Q 011529          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF---CHNWGT  337 (483)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  337 (483)
                      +.|++..+..++. +......+++++..+    ++.+...+..+...+....+++++++++.++...+...   ......
T Consensus       173 ~~f~i~~~~~~~~-~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T PRK12307        173 AAFFVGLLPVLLV-IYIRARAPESKEWEE----AKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGAN  247 (426)
T ss_pred             HHHHHHHHHHHHH-HHHHHHCCCChHHHH----hhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            9998754333222 111111121111000    00000000000000111224667888888765443322   222333


Q ss_pred             HHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          338 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       338 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ..+..++|.|+++ .|+++.+.+.+.+...++.++++++.|++.||+++|+
T Consensus       248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            4467789999988 6999999999999999999999999999999999874

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.97  E-value=7.8e-29  Score=245.21  Aligned_cols=286  Identities=15%  Similarity=0.231  Sum_probs=221.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (483)
                      ++..+..+.+.+...+.+...+....|.+.+ +|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4566666667777777777777777887776 599999999999999999999999999999999999999999999888


Q ss_pred             HHHHhhhhhc--ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-ccC
Q 011529          182 ATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFG  258 (483)
Q Consensus       182 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g  258 (483)
                      +.++..+.+.  .+++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+....+|..+++.+.+...+ ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            8877665421  1577788899999999999889899999999999999999999999999999999888776544 578


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChh-hHHH-hhhcccC-CCC--CcccchhhhhcChhHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA-EKKL-IVSSCAS-KEP--VKTIPWGLILSKPPVWALIVSHFCH  333 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  333 (483)
                      ||+.|++.+++.++..+..++..++++++....+.+ .++. ..+..+. +++  .+....+.++|++.+|...+..++.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFV  263 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHH
Confidence            999999988888776666555555544321110000 0000 0000000 000  0001122467899999888888887


Q ss_pred             HHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ....++..+++|.|+++..|+++.++++...+..++.+++.++.|++.||+++++
T Consensus       264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            8888888899999999988999999999999999999999999999999997553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=4.6e-28  Score=236.78  Aligned_cols=332  Identities=14%  Similarity=0.128  Sum_probs=248.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (483)
                      .++.+.+..+..++..+....+.+.+|.+.+++|.|+.+.+++.+++.++..++++++|+++||+|||+++..+.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            44455555556666667777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchH
Q 011529          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  261 (483)
                      +.++..+.+  +++.+++.|++.|++.+...+....+..|.++++++++++++.+.+..++..++|.+++.+.+..|||+
T Consensus        86 ~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            988888887  899999999999999888888888899999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 011529          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (483)
                      .|++.++..++..+......+++++++++. + +              ...+++..+++|.++...+..+........+.
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADARR-T-R--------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFE  227 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccch-h-H--------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999988777665555444445433221111 0 0              02245677889988877666666666666667


Q ss_pred             HhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh--hccchh
Q 011529          342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL--SHVDSP  419 (483)
Q Consensus       342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  419 (483)
                      .+.+.++++.+|.+..+.+++.....++.+++..+.+++.||.+++        ..............+...  ......
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWFGVMNV  299 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccH
Confidence            7888899988899999999988888888889999999999998733        111111111111111111  112223


Q ss_pred             HHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeee
Q 011529          420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN  459 (483)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  459 (483)
                      +.......+.+...+...+.......+..|+++|.+.+..
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  339 (394)
T PRK11652        300 WTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALL  339 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            3333333333333445566677777777788888877643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=1.5e-28  Score=237.71  Aligned_cols=333  Identities=13%  Similarity=0.043  Sum_probs=246.1

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh
Q 011529          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (483)
                      +....++..+......+.+|.+..+++.++.+++++.+++.++..+++++.|+++||+|||+++..+.++..++.++..+
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            34566677777788888899999999999999999999999999999999999999999999999998888877776655


Q ss_pred             hhc---ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHH
Q 011529          189 AAK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (483)
Q Consensus       189 ~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  265 (483)
                      ...   .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++||.+++.+.+..||++.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            431   26889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH-Hhh
Q 011529          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWM  344 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  344 (483)
                      .++..++..+..+...+++++++++.+.+++. .        ++....++.++|+|.++...+..++......... .+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELAASEIQALSNAV-L--------RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALF  234 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCCCccccccchhH-H--------HHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            87766665544444332222111111100000 0        0012245677889999888888777777777666 888


Q ss_pred             HHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHH
Q 011529          345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMAV  423 (483)
Q Consensus       345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  423 (483)
                      |.+.++.+|.+..+.+.+.....++.+++.++.+++.||+++++.       ..  .+..............+ +.+...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL-------MT--GAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH-------HH--HHHHHHHHHHHHHHhhchhHHHHH
Confidence            999988789999999999999999999999999999999987732       11  11212222222211222 233333


Q ss_pred             HHHHHhhhhhhhhhchhhhhHhhhc-cCcceeeeeee
Q 011529          424 LCMACSQGTDAFSQSGLYSNHQDIA-PRYSVSIISIN  459 (483)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~  459 (483)
                      +...+.+...+...+.......+.. ++++|++.|..
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQ  342 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3333333334444555666666655 45688888744

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=4.6e-28  Score=237.30  Aligned_cols=265  Identities=12%  Similarity=0.080  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (483)
                      ..+.+..++.......+.+.+|.+.+++|.+..+.++..+++.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            33444556667777888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                      .+++  +++.++++|+++|++.+...+....++.|++|++++++++++......+|..+||.+++.+.++.|||+.|++.
T Consensus        99 ~~a~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~  176 (413)
T PRK15403         99 LFTT--SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII  176 (413)
T ss_pred             HHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9988  99999999999999988767777888999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                      +++.++..+..++..|++++++++... .+.            ...+++.++|||.+|...+..++.......+..+.|.
T Consensus       177 ~~~~~i~~~~~~~~lp~~~~~~~~~~~-~~~------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~  243 (413)
T PRK15403        177 AVMGLIAFVGLLLAMPETVKRGAVPFS-AKS------------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPV  243 (413)
T ss_pred             HHHHHHHHHHHHHhCCCCccccCCCCC-hHH------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            888777666555545554322111100 000            0124667899999999888888888888888888999


Q ss_pred             HHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011529          347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVS  386 (483)
Q Consensus       347 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~  386 (483)
                      ++++.+|+++.+.++.......+..++..+.+++.+|..+
T Consensus       244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~  283 (413)
T PRK15403        244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTE  283 (413)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            9999889999999998887888888887777776654433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.2e-28  Score=239.72  Aligned_cols=256  Identities=16%  Similarity=0.218  Sum_probs=218.0

Q ss_pred             hhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHH
Q 011529          119 DRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLL  198 (483)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (483)
                      ...++.+.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+.+  +++.++
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~   83 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQLI   83 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHH
Confidence            345667889999999999999999999999999999999999999999999999999999999999998888  899999


Q ss_pred             HHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 011529          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (483)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  278 (483)
                      +.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+|++.|++.+++.++..++..
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888777666655


Q ss_pred             HhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcch
Q 011529          279 SKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE  358 (483)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  358 (483)
                      ...+++++++++.+.+.++            ...++++.+++|.++...+..++.......+..+.|.++.+.+|+++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  231 (377)
T PRK11102        164 FFIPETLPKERRQPFHLRT------------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN  231 (377)
T ss_pred             HhCCccCcccccCCCChHH------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence            5555543221111110000            0123556788898888777777777777777888888888888999999


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          359 SGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       359 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      .+.+.....++.+++.++.+++.||+++|+
T Consensus       232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~  261 (377)
T PRK11102        232 FGYYFALNIVFLFVMTIINSRFVRRVGALN  261 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            999999999999999999999999999885

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=6.6e-28  Score=241.70  Aligned_cols=279  Identities=17%  Similarity=0.188  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhh----HHH--HHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHH
Q 011529          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT----VGL--IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV  176 (483)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~g~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  176 (483)
                      ++.+....++.++.++|...++...|.+.++++.+..+    ++.  +.++..++..++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566778899999999999999999999998643321    222  257788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcccHHH--------HHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHh
Q 011529          177 VWWSIATALTPVAAKLGLPF--------LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (483)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~--------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  248 (483)
                      ++++++.+++++++  +++.        ++++|+++|++.|..++...+++.|++|+++|++..++...+..+|..+|+.
T Consensus        95 ~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998  7653        7899999999999999999999999999999999999999888888888886


Q ss_pred             hHHHhh--------hccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcC
Q 011529          249 FSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK  320 (483)
Q Consensus       249 ~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (483)
                      +...+.        ..+|||+.|++.+++.++. ++.....+|+|+..+..++.++    ...+...+.+..++++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  247 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQHVDKLEQ----GDREGLQDGPKVSFKEIATK  247 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHHHHhhhh----hccccccccccCCHHHHHHH
Confidence            665443        2579999999876555443 2333334443321100000000    00000011123356666653


Q ss_pred             -hhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          321 -PPVWA-LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       321 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                       ++.+. .....++....++.+..|+|.|+++.+|++..+.++......++.+++.++.|+++||+|||+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  317 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP  317 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence             23222 223334455677788899999998878999888888877888899999999999999999884

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=1.1e-27  Score=234.63  Aligned_cols=328  Identities=15%  Similarity=0.138  Sum_probs=242.1

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh
Q 011529          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (483)
                      +.+...+..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            33334455566777888889999999999999999999999999999999999999999999999999999999888888


Q ss_pred             hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 011529          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (483)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  268 (483)
                      .+  +++.+++.|++.|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.++.|||+.|++.++
T Consensus        91 ~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~  168 (401)
T PRK11043         91 VE--SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFA  168 (401)
T ss_pred             hc--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            88  8999999999999998888888889999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 011529          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY  348 (483)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (483)
                      +.++..+..+...++++++ +  ++++               ..++++++|+|.++...+...+.......+..+.|.++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~-~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  230 (401)
T PRK11043        169 ITLLLILPTLRLKPSKKAR-K--QSQD---------------ALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL  230 (401)
T ss_pred             HHHHHHHHHHHcCCCCCcc-c--cchH---------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            7777665555443332211 1  0000               12456778888888766666666666677778889988


Q ss_pred             HHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 011529          349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC  428 (483)
Q Consensus       349 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (483)
                      ++ .|+++.+.++......++.+++.++.+++.||+++|+.....    .....+.............+..+..+....+
T Consensus       231 ~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (401)
T PRK11043        231 EQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWL----LVLFAVSVIAIWLASLLSHPSLVPLLIPFCV  305 (401)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH----HHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            76 799999999988888889999999999999999877422111    1111111111111111122233333333333


Q ss_pred             hhhhhhhhhchhhhhHhhhccCcceeeeeeeec
Q 011529          429 SQGTDAFSQSGLYSNHQDIAPRYSVSIISINIL  461 (483)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  461 (483)
                      .....+...+.......+..|+++|++.|+...
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  338 (401)
T PRK11043        306 MAAANGAIYPIVVAQALRPFPQATGKAAALQNT  338 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhCcccChHHHHHHHH
Confidence            333334445555555555567788888885443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.97  E-value=1.8e-28  Score=243.08  Aligned_cols=351  Identities=12%  Similarity=0.096  Sum_probs=245.4

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      ..++|.++..+++.....+.....++..+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus        14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   93 (455)
T TIGR00892        14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL   93 (455)
T ss_pred             CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence            34567777777777666666666678889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccHHHHHH-HHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc
Q 011529          179 WSIATALTPVAAKLGLPFLLV-VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (483)
                      .+++.+++++++  +++.+++ .|++.|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+.+.+
T Consensus        94 ~~~~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892        94 ASLGMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             HHHHHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            999999888888  8887765 4689999988776777888899995 88999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCh-hhH---HHhhhc--c-c-CCCCCcccchhhhhcChhHHHHHHH
Q 011529          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP-AEK---KLIVSS--C-A-SKEPVKTIPWGLILSKPPVWALIVS  329 (483)
Q Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  329 (483)
                      |||+.|++.+++.++..+..++..++++.++....+ ++.   ....+.  . . .++..+..++ +++++|.++...+.
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  249 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSG  249 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHH
Confidence            999999999988776655544444332211000000 000   000000  0 0 0000001112 46789999988888


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 011529          330 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF  409 (483)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (483)
                      .++..........++|.|+++ .|++..+++++.++.+++.++++++.+++.||...++.     +......+....++.
T Consensus       250 ~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-----~~~~~~~~~~~~~l~  323 (455)
T TIGR00892       250 NVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-----VQYLFSFALLFNGLT  323 (455)
T ss_pred             HHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-----HHHHHHHHHHHHHHH
Confidence            888888888888899999987 79999999999999999999999999999997421110     112222222222222


Q ss_pred             HHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhh-ccCcceeeeeee
Q 011529          410 LTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYSVSIISIN  459 (483)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~  459 (483)
                      .......++.+.+++...+.+...+...+.......+. +++++|+++|+.
T Consensus       324 ~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~  374 (455)
T TIGR00892       324 HLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLV  374 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHH
Confidence            22222233333333333333333334444455555554 455678888744

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=2.2e-27  Score=237.55  Aligned_cols=281  Identities=16%  Similarity=0.193  Sum_probs=229.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .++.++++.++..++...+.+.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            45566777888888888899999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  264 (483)
                      ++.+.+  +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+...++|..+||.+++.+.++.|||+.|+
T Consensus        91 ~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            888887  899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHH-----------hhh--------------------------cccCCC
Q 011529          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL-----------IVS--------------------------SCASKE  307 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--------------------------~~~~~~  307 (483)
                      +......+..+......++.+.+..+.+......           ..+                          ..+...
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9887776666655555444332222111110000           000                          000111


Q ss_pred             CCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          308 PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      +++..+. +++|||.++...+..++..........+.|.|++...|.++.+.++......++.+++.++.+++.||+++|
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1122233 478999998888888888888777778899999987899999999999888888999999999999999988


Q ss_pred             C
Q 011529          388 G  388 (483)
Q Consensus       388 ~  388 (483)
                      +
T Consensus       328 ~  328 (471)
T PRK10504        328 R  328 (471)
T ss_pred             H
Confidence            4

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=8.7e-28  Score=235.10  Aligned_cols=268  Identities=13%  Similarity=0.120  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (483)
                      ....++.++...........++.+.+++|.++.+.|++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~   95 (402)
T TIGR00897        16 LWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF   95 (402)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            33444444444454445556677778999999999999999999999999999999999999999999999988887654


Q ss_pred             h---h-hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHH-HHHHhhHHHhhhccCchH
Q 011529          187 P---V-AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       187 ~---~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~g~~~  261 (483)
                      .   + .+  +++.+++.|++.|++.+...+...+.+.+++|+++|++++|+.+...++|. .++|.+++.+.+.+||+.
T Consensus        96 ~~~~~~~~--~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~  173 (402)
T TIGR00897        96 IVFGLGHA--NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMN  173 (402)
T ss_pred             HHHhccCc--cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH
Confidence            2   2 23  688888999999999888878888889999999999999999999999997 689999999998889776


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 011529          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (483)
                      .++.......+..++.++..++.++++++.++.+.           .+....++.++|+|.++...+..++.....+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (402)
T TIGR00897       174 TLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKF-----------SELGKAATILFTNPNVLLGGMVRIINTIGLFGFA  242 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCcccccCCcch-----------hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence            65554443333333333333332211111000000           0001235678899999988888888888888889


Q ss_pred             HhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ++.|.|+++ +|++..+.+.+.....++..++.++.|++.||+++|+
T Consensus       243 ~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  288 (402)
T TIGR00897       243 VFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN  288 (402)
T ss_pred             HHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            999999877 8999999999888999999999999999999999875

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=1.5e-28  Score=240.68  Aligned_cols=348  Identities=23%  Similarity=0.326  Sum_probs=245.6

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      ++++..+..+.+..+..+++.....+..|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            34566666777777778888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      +++.++..+.+  +++.+++.+++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+|
T Consensus        93 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            99988888888  8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHH----hhhc-------ccCCC----CCcccchhhhhcC---h
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL----IVSS-------CASKE----PVKTIPWGLILSK---P  321 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~----~~~~~~~~~~~~~---~  321 (483)
                      ++.+++.+++.++..++.....+++++...+.++++...    ....       ...++    +..+..++.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            999998876666655555555555432111111111000    0000       00000    0011112223322   3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 011529          322 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI  401 (483)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  401 (483)
                      ..+...+..++..........+.|.+.++ .|.++.+.+...+...++.+++.++.+++.||+++|+.       .....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~  322 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT-------ALLLL  322 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH-------HHHHH
Confidence            33444455556666677777888855544 89999999999999999999999999999999987621       11111


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          402 GFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      ........+..  ...+.........+.+...+...+.......+..| +++|+++|+.
T Consensus       323 ~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  379 (398)
T TIGR00895       323 LGAVFAVLVGS--TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWA  379 (398)
T ss_pred             HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            11111111111  12222222333333333334445556667777654 5688888743

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=2.3e-27  Score=234.46  Aligned_cols=270  Identities=14%  Similarity=0.137  Sum_probs=202.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHH-HHHH-----HHHHHHHHhhHHHHHhhcCCchHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLI-QSSF-----FWGYLLTQIAGGIWADTVGGKAVLGFG  175 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~-~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~  175 (483)
                      |++....++++.++.++|...+++..|.+.++++.++.+.+.+ .+..     .+...+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            4446788888999999999999999999999999988776543 2222     233346789999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcccHH--------HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHH
Q 011529          176 VVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (483)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  247 (483)
                      .++.+++.+++++++  +++        .++++|+++|++.+...+....++.|++|+++|++++++.+....+|..+++
T Consensus        93 ~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999988  765        4688999999999999999999999999999999999999999888888888


Q ss_pred             hhHHHhh--------hccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhc
Q 011529          248 AFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILS  319 (483)
Q Consensus       248 ~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (483)
                      .+++.+.        +.+|||+.|++..+...+ .   +...+..+ +.+   +..++.    .   ++..+..++...+
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~---~~~~~~~~-e~~---~~~~~~----~---~~~~~~~~~~~~~  235 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-I---FLIRRSLE-ETE---EFLARK----H---RPSMREIFRSLAA  235 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-H---HHHHHhcC-CCH---HHHHhh----h---ccccccHHHHHHH
Confidence            8777652        468999999875433211 1   11111111 110   000000    0   0011122444455


Q ss_pred             ChhHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          320 KPPVWAL-IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       320 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      +++.+.. .+..++.....+.+..|.|.|+++.+|++..+.++...+..++.+++.++.|++.||+++|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~  305 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP  305 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            6555543 33334455566778899999999888999999988888888999999999999999999885

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=2.9e-27  Score=231.02  Aligned_cols=266  Identities=17%  Similarity=0.186  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (483)
                      +.......+........+.+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            34444555556666667778899999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHH
Q 011529          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (483)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  265 (483)
                      +.+.+  +++.+++.|++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+.+..+|++.|++
T Consensus        85 ~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~  162 (392)
T PRK10473         85 CSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT  162 (392)
T ss_pred             HHHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence            88888  8899999999999999988999999999999999999999999999999999999999998888999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 011529          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (483)
                      .+++.++..++.+...+++++++++.+...               ....++.++++.++...+...+.......+..+.|
T Consensus       163 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (392)
T PRK10473        163 MAAMGILVLLLSLFILKETRPARAPAASSK---------------PRENSESLLNRFFLSRLVITTLSVTVILTFVNTSP  227 (392)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCCccch---------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            888877776665555555432211111000               11234567888877666665555555556667788


Q ss_pred             HHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       346 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      .++++.+|+++.+.+.+.+..+++.+++.++.+++.||+++|+
T Consensus       228 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~  270 (392)
T PRK10473        228 VLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT  270 (392)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            8888888999999999999999999999999999999999884

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=2.8e-27  Score=229.84  Aligned_cols=320  Identities=15%  Similarity=0.063  Sum_probs=230.5

Q ss_pred             HHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHH-HHHHHHHHHHHhhh
Q 011529          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF-GVVWWSIATALTPV  188 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~  188 (483)
                      +.+++..+......+.+|. +.+++|.|+.++|++.+++.+...+.+++.|+++||+||||.++. +.++..++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            4466677777788888887 578899999999999999999999999999999999999887654 55666667777778


Q ss_pred             hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHH--HHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRS--LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                      ++  +++.+++.|++.|.+.+...|...++..|+.|+++|++.  .+......++|..+||.+++.+.+..+||+.|++.
T Consensus        84 ~~--~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        84 NR--NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             cc--hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            87  889899999999888788888888899998877777654  68888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                      +++.++..+..++..|+.+++.++.++                 ..+.++.+++|.++...+..++..........++|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGAPGALT-----------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPL  224 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCcccccC-----------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHH
Confidence            888777766665555554332111000                 112334567777776666666555556666778899


Q ss_pred             HHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011529          347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM  426 (483)
Q Consensus       347 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (483)
                      |+++.+|.++.+.+.+.....+..+++.++.|++.||+++|+...       .  +.+............++.+..+...
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~  295 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLML-------L--AALAGVAFYTGLAADNSLWALLMLQ  295 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHH-------H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998889999999998888777778888999999999999885322       1  1111111111111222333333333


Q ss_pred             HHhhhhhhhhhchhhhhHhhhccCcceeeeee
Q 011529          427 ACSQGTDAFSQSGLYSNHQDIAPRYSVSIISI  458 (483)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  458 (483)
                      .+.+...+...+.......+..|++++.+++.
T Consensus       296 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  327 (375)
T TIGR00899       296 LLNAIFIGILAGIGMLYFQDLMPGRAGAATTL  327 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence            33333333344555566777778777777764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=6.9e-27  Score=228.09  Aligned_cols=326  Identities=14%  Similarity=0.134  Sum_probs=237.7

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (483)
                      +..++..+++.++.....++.+|.+++++|.+..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45566677777888888899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhhh-cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc--------
Q 011529          186 TPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------  256 (483)
Q Consensus       186 ~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------  256 (483)
                      +..+. ..+++.+++.|++.|+|.+...+..+.++.+..|+++|++..++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            64432 127899999999999999999999999999999999999999999999999999999999877532        


Q ss_pred             ------------------cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhh
Q 011529          257 ------------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLIL  318 (483)
Q Consensus       257 ------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (483)
                                        .+||++|++.+++.++..++..+. +.++.++++ +  ++           .....+.++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~p~~~~~~-~--~~-----------~~~~~~~~~~~  229 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KMPALNHSD-A--KQ-----------ISFSASLSRLA  229 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccc-c--cc-----------ccchhhHHHHH
Confidence                              359999998888777655444322 111111110 0  00           00011345678


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 011529          319 SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL-HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI  397 (483)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~  397 (483)
                      |+|.++...+..+++...+....++++.|.++.. +.+....+...+....+..+|+++++++.||+++|+.        
T Consensus       230 ~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~--------  301 (410)
T TIGR00885       230 RIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV--------  301 (410)
T ss_pred             hChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH--------
Confidence            9999998888888888888888899999997632 3344444556666778889999999999999987742        


Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeee
Q 011529          398 MQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSII  456 (483)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  456 (483)
                      +. +..++.....+.....+.......+..++ ++.....|...+...+..+++...+.
T Consensus       302 l~-i~~~~~~~~~ll~~~~~~~~~~~~l~~~g-lf~s~~fp~i~sl~~~~~g~~~~~~s  358 (410)
T TIGR00885       302 LM-AYAIIGMALCLGSIFAGGHVGLYCLTLCS-AFMSLMFPTIYGIALKGLGQDTKYGA  358 (410)
T ss_pred             HH-HHHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence            11 11111111222222222223333333444 34444457777777776666654433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=6.1e-27  Score=236.09  Aligned_cols=285  Identities=16%  Similarity=0.227  Sum_probs=209.5

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      +++|+.+..+++..++..++.....+.+|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            35667788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      +++.+++.+.+  +++.+++.|++.|++.+...+....++.|++|+++|++++++......+|..++|.+.+.+.+.++|
T Consensus        96 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         96 SVGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999988888  8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CChhhHHHhhhcccCCCCCcccch----------hhhh----------
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-LRPAEKKLIVSSCASKEPVKTIPW----------GLIL----------  318 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~----------  318 (483)
                      |+.|++.++..++. +......++.++..++ .++.+.+...+.....++ +....          ...+          
T Consensus       174 ~~~f~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
T PRK03893        174 RALFFIGILPIIFA-LWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH-RIINILLTLAAAAALWFCFAGNLQNAAIV  251 (496)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhCCCchhhhhhccccccchhHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence            99998754433322 2222222322110000 000000000000000000 00000          0000          


Q ss_pred             ---------------------cChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHH
Q 011529          319 ---------------------SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLG  377 (483)
Q Consensus       319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  377 (483)
                                           +.+......+..+...........++|.|+++.+|++..+.+.+.+...++.+++.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~  331 (496)
T PRK03893        252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG  331 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 00000000011111111112345788999987799999999999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 011529          378 GWIADTLVSKG  388 (483)
Q Consensus       378 g~l~dr~g~~~  388 (483)
                      |++.||+++|+
T Consensus       332 g~l~dr~g~~~  342 (496)
T PRK03893        332 GFLGDWLGTRK  342 (496)
T ss_pred             HHHHHHhcchH
Confidence            99999999884

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=1.3e-26  Score=228.96  Aligned_cols=274  Identities=17%  Similarity=0.174  Sum_probs=201.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhh-hhhhc--CCChhhHHHHH-----HHHHHHHHHHHhhHHHHHhhcCCchHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEF--NWNPATVGLIQ-----SSFFWGYLLTQIAGGIWADTVGGKAVL  172 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~g~~~-----~~~~~~~~~~~~~~g~l~dr~g~r~~~  172 (483)
                      ++++.+...+++.++.+++...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            34456777888999999999998888775 55555  66665 45543     345566778899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccHH--------HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHH
Q 011529          173 GFGVVWWSIATALTPVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV  244 (483)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  244 (483)
                      .++.++.+++.+++++++  +++        .++++|+++|++.+..++....++.|++|+++|++..+..+.+..+|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         98 MLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999998  765        5888999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHhh--------hccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhh
Q 011529          245 TGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGL  316 (483)
Q Consensus       245 ~g~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (483)
                      ++..+...+.        ..+|||+.|++.++..++.. ......+|+++.    . +++.    +.++ .+.+....+.
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~~es~~~----~-~~~~----~~~~-~~~~~~~~~~  244 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGMEESAEF----E-QQQH----EQAA-AKKRIPVIEA  244 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhCCCChhH----H-HHHh----hccc-ccccCCHHHH
Confidence            9887776654        25799999998776654322 211122222110    0 0000    0000 0001112334


Q ss_pred             hhcChhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          317 ILSKPPVWALIV-SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       317 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ++++|+.+...+ ..++.....+....|.|.|+++.+|++......+....++..+++.++.|+++||++||+
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~  317 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR  317 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence            667777666544 445556667778889999998888988876655566667778889999999999999885

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=6e-27  Score=227.98  Aligned_cols=266  Identities=12%  Similarity=0.038  Sum_probs=205.3

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh
Q 011529          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (483)
                      .++++.++..++...+....+.+.++++.++.+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.+.+.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            45566777777666666666777899999999999999999999999999999999999999999999999988888776


Q ss_pred             hhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHH
Q 011529          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (483)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  267 (483)
                      +..  +.   ++.|+++|++.+...|+..+++.|++|+++|++++|+.+....+|.++||.++|++.+. .|+..+.+.+
T Consensus        87 ~~~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~  160 (393)
T PRK11195         87 FGI--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCA  160 (393)
T ss_pred             HHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            665  43   67899999999999999999999999999999999999999999999999999999885 4777777666


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011529          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (483)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (483)
                      ...++..+.. ...++.+.++++.+.+......+        ....++.++++|.++.......+...........+|.|
T Consensus       161 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (393)
T PRK11195        161 LIYLLAALFN-LFIPRLGARRPGQSWNPIALLRD--------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAW  231 (393)
T ss_pred             HHHHHHHHHH-hcCCCCcccccccCCCHHHHHHH--------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443333 33444332211111111000000        01124567888887766555555555556666777888


Q ss_pred             HHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          348 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       348 ~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      +++.+|.++.+.|++.+..+++.+++.++.+++.||.++++
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~  272 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR  272 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            88889999999999999999999999999999999877664

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.2e-29  Score=231.23  Aligned_cols=282  Identities=18%  Similarity=0.232  Sum_probs=232.5

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      .+..++.+.++++..++++.+.+.+.-..+.+.+.+|+++...|++.+.+.+.+.++.|++|+++||+.||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34556678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          179 WSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      +.++.+..+++.  .+|+++++|.+.|+|.+.+.++++++++|.+|.++|++.+++++.+..+|..+|.+.++.+.+..+
T Consensus       108 W~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  108 WTLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            999999999998  999999999999999999999999999999999999999999999999999999999999888766


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHH
Q 011529          259 -WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT  337 (483)
Q Consensus       259 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (483)
                       |||.|+..+++.+++.++.+++.+++++...++...+.+     ..........+.+.+.|+|.+....+......+..
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-----~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~  260 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-----MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI  260 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc-----CCCCccchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence             999999999999999999888888765432221111110     00111112334555667777766666666666666


Q ss_pred             HHHHHhhHHHHHHH---hCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          338 FILLTWMPTYYNQV---LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       338 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      ..+.-|.|.++...   .|.+..+..++..+...++.+|.+++|.++||+.++
T Consensus       261 Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~  313 (493)
T KOG1330|consen  261 GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRI  313 (493)
T ss_pred             cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHh
Confidence            66666666665543   355666666777778889999999999999996543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=3.9e-27  Score=231.94  Aligned_cols=326  Identities=16%  Similarity=0.106  Sum_probs=231.2

Q ss_pred             HHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh--
Q 011529          111 SAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--  188 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--  188 (483)
                      ...++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+....  
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  103 (417)
T PRK10489         24 IARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA  103 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence            335555666677788889988999999999999999999999999999999999999999998888777776654432  


Q ss_pred             -hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHH
Q 011529          189 -AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (483)
Q Consensus       189 -~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  267 (483)
                       ....+++.+++.|++.|++.+...+...+++.+++|+++|+++.++.+....+|..+||.+++.+.+..+|++.|++.+
T Consensus       104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~  183 (417)
T PRK10489        104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA  183 (417)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence             1112788889999999999888888889999999999999999999999999999999999999999889999998877


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011529          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (483)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (483)
                      +..++..++.+.. ++.++++++.++. .+           .....++.++++|.++...+..++... ......++|.|
T Consensus       184 ~~~~~~~~~~~~l-~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~  249 (417)
T PRK10489        184 AGTFITLLPLLRL-PALPPPPQPREHP-LR-----------SLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPAL  249 (417)
T ss_pred             HHHHHHHHHHHhC-CCCCCCCcccccc-hH-----------HHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHH
Confidence            7766655544433 3322211111000 00           001235567788887766555544333 45677889999


Q ss_pred             HHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011529          348 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA  427 (483)
Q Consensus       348 ~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (483)
                      +++.+|.++.+.+++.+...++.+++.++.+++.||.++++.         +..+.++....+......++.+...++..
T Consensus       250 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        250 ADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL---------MLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH---------HHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            999889999999999999999999999999999998554421         11111222222222223333333333333


Q ss_pred             HhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          428 CSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      +.+...+...+...+..++..| +.+|+++|+.
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLW  353 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            3333333334445566666655 5689888843

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=3.3e-26  Score=224.14  Aligned_cols=259  Identities=20%  Similarity=0.206  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHH
Q 011529          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (483)
                      +.+..+.+..++..++..+..+.+|. +.+++|.|+.++|++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            34556677777888888888888887 67889999999999999999999999999999999999999999999888776


Q ss_pred             HHHhhhh---hc---ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          183 TALTPVA---AK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       183 ~~~~~~~---~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      .+.+.+.   +.   .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++|+.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            6554432   10   14567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHH
Q 011529          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG  336 (483)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (483)
                      .||+..+++..++.++..+.. .   +.++.+++.+  +               +.++++.++  .++.......+....
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~--~---------------~~~~~~~~~--~~~~~~~~~~~~~~~  231 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLA-R---PRPAVPPVKG--E---------------RLPFRRVLG--RVWPYGMGLALASIG  231 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-h---cCCCCCCCCc--c---------------chhHHHHHH--HHHHHHHHHHHHHHH
Confidence            999998887666544333222 1   1111111100  0               001222232  223333333344555


Q ss_pred             HHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       337 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ......+++.|+.+ .|.  ...+...+...++.++++++.|++.||+++|+
T Consensus       232 ~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  280 (399)
T PRK05122        232 FGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLR  280 (399)
T ss_pred             HHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            66677888888876 565  34566677788889999999999999998774

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=7.1e-27  Score=234.57  Aligned_cols=286  Identities=19%  Similarity=0.220  Sum_probs=204.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCC--------hhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWN--------PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG  173 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  173 (483)
                      .+....++.++.++..++...+...++.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~  105 (481)
T TIGR00879        26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL  105 (481)
T ss_pred             HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence            344444455566677778888888888888888777        899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhc-ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhH--
Q 011529          174 FGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--  250 (483)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--  250 (483)
                      ++.++..++.+++.+... .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  185 (481)
T TIGR00879       106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG  185 (481)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999998888755431 24568999999999999999999999999999999999999999999999999999998  


Q ss_pred             -HHhhhccCchHHHHHHHHHHHHHHHHHHHhccCCCCC--CCCCChhhHHHhhhcccCC--------------------C
Q 011529          251 -PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE--DPQLRPAEKKLIVSSCASK--------------------E  307 (483)
Q Consensus       251 -~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------------~  307 (483)
                       +...+..+||+.|++.++..++..+.. .+.++.+..  .++..++..+...+.....                    .
T Consensus       186 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (481)
T TIGR00879       186 KVSLNNTLGWRIPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEK  264 (481)
T ss_pred             hhcCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence             666677899999999666555544433 334443321  0000000000000000000                    0


Q ss_pred             CCcccchhhhhc------ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHH
Q 011529          308 PVKTIPWGLILS------KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIA  381 (483)
Q Consensus       308 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~  381 (483)
                      ......++..++      .+.++...+..+........+..+.|.++++ .|++..+.+.......++.+++.++.+++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~  343 (481)
T TIGR00879       265 RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLV  343 (481)
T ss_pred             hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000011222222      2223333333333333344556677777766 799998888888899999999999999999


Q ss_pred             HHHhhcCC
Q 011529          382 DTLVSKGL  389 (483)
Q Consensus       382 dr~g~~~~  389 (483)
                      ||+++|+.
T Consensus       344 d~~~~~~~  351 (481)
T TIGR00879       344 DRFGRRPL  351 (481)
T ss_pred             HHhcchHH
Confidence            99998853

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=3.2e-26  Score=222.51  Aligned_cols=323  Identities=9%  Similarity=0.002  Sum_probs=236.9

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHH-HHHHHH-HHh
Q 011529          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV-WWSIAT-ALT  186 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~~~~~-~~~  186 (483)
                      +.+.++..+.......|++|.+.+++|.|..++|++.+++.+...++++++|+++||+||+........ ...+.. ...
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            445566667777888899999999999999999999999999999999999999999998543321111 111111 223


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                      ..++  +++.+++.|++.|.+.+...|...++..++  +++|++.+|......++|.+++|.+++.+.+++|||..|++.
T Consensus        89 ~~~~--~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        89 AGAH--NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             Hhhh--hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            3456  899999999999999888889888887664  578899999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                      ++..++.. ......++.++++++ ++++            .....++++++|+|++|...+..++.......+..+.|.
T Consensus       165 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~  230 (382)
T TIGR00902       165 TAGLAFML-IGFLIKPTIPPKDAI-PEDE------------SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAI  230 (382)
T ss_pred             HHHHHHHH-HHHHcCCCCCCCccc-cccc------------cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65533332 233333321111111 0000            011224667899999999999889988999999999999


Q ss_pred             HHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011529          347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM  426 (483)
Q Consensus       347 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (483)
                      |+++ .|.++.++|.+..+..++.+++.++.+++.||++.|+         .+..+.+.....+......++.+..+...
T Consensus       231 ~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  300 (382)
T TIGR00902       231 YWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD---------LLLISAIACVGRWAIIGAIEAFPLIFLLQ  300 (382)
T ss_pred             HHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH---------HHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence            9987 8999999999999989999999999999999999773         33344444444444444455555555555


Q ss_pred             HHhhhhhhhhhchhhhhHhhhccCcceeeeeee
Q 011529          427 ACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN  459 (483)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  459 (483)
                      .+-+...+...+....+..+.++++++++.++.
T Consensus       301 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~  333 (382)
T TIGR00902       301 ILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALY  333 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHH
Confidence            555555555555566666666555677766643

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=1.2e-25  Score=218.53  Aligned_cols=260  Identities=17%  Similarity=0.112  Sum_probs=207.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .+..++++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~   86 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  264 (483)
                      .+.+.+  +++.+++.|++.|++.+...+...+.+.+..++++|++++++.+...++|..+||.+++.+.+...+...+.
T Consensus        87 ~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  164 (381)
T PRK03633         87 GLGLMV--GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV  164 (381)
T ss_pred             HHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence            888888  999999999999999998888888888899999999999999999999999999999999877543333322


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (483)
                       .+.......... +. +.++++.++ +                 +..+.++.+++|.++......+.....+.....++
T Consensus       165 -~~~~~~~~~~~~-~~-~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (381)
T PRK03633        165 -TGLVLAAILPLL-FT-RILNQQAEN-H-----------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLM  223 (381)
T ss_pred             -HHHHHHHHHHHH-Hh-cccCCCCCC-C-----------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence             222222211121 11 111111000 0                 01234566788887765554555555566677889


Q ss_pred             HHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      |.|+++ .|.++.+.+.+.+...++.+++++..|++.||+++|+
T Consensus       224 p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~  266 (381)
T PRK03633        224 PLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL  266 (381)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence            999987 6999999999999999999999999999999999874

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.96  E-value=1.9e-25  Score=217.97  Aligned_cols=320  Identities=13%  Similarity=0.079  Sum_probs=225.1

Q ss_pred             HHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh
Q 011529          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (483)
                      ...++.........+.++. +.+++|.|..++|++.+...+...+.+++.|+++||+|||+++..+.++.+++.+.+.+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~   96 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            4444445555555666655 678999999999999999999999999999999999999999999999999999998888


Q ss_pred             hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHH
Q 011529          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (483)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  269 (483)
                      +  +++.+++.|++.|++.+...+...+++.+++|+++|++++|+.+....+|..+||.+++.+. .++|++.|++.++.
T Consensus        97 ~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~  173 (400)
T PRK11646         97 H--EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL  173 (400)
T ss_pred             c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            7  89999999999999998888999999999999999999999999999999999999999998 67999999998877


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 011529          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (483)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (483)
                      .++..++.....++.+++ +. +++               ...++++++++|.++...+..+...........++|.|++
T Consensus       174 ~~~~~i~~~~~~~~~~~~-~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKLS-TV-RTP---------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVN  236 (400)
T ss_pred             HHHHHHHHHHhCCccccc-cc-chh---------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            776655544444332111 00 000               0124567788988877666555544444455678899998


Q ss_pred             HHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 011529          350 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC  428 (483)
Q Consensus       350 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (483)
                      +. +.++.+.+++.+...++...+....+++.|| ++.++       ...  .+..+...........++.+.......+
T Consensus       237 ~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        237 DI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-------RLM--AGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             hh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-------HHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            85 4477888888888777666655555666554 44331       111  2222222222222222333333222222


Q ss_pred             hhhhhhhhhchhhhhHhhhc-cCcceeeeeeee
Q 011529          429 SQGTDAFSQSGLYSNHQDIA-PRYSVSIISINI  460 (483)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~  460 (483)
                      .........+.......+.. ++++|+++|...
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~  339 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSR  339 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHH
Confidence            22223344455566666655 577999998443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=2.2e-25  Score=219.16  Aligned_cols=327  Identities=17%  Similarity=0.141  Sum_probs=227.5

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhh-----HHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPAT-----VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      ...++++.++.........+.+|.+.+++|.+..+     .|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            34455666777778888889999999999988654     4889999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCch
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWP  260 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  260 (483)
                      ++.+++.+.+  +++.+++.|++.|++.+ ..+....++.+.+|+++|++++++.+....+|..++|.+++.+.+..+|+
T Consensus        96 ~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  172 (408)
T PRK09874         96 IVMVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR  172 (408)
T ss_pred             HHHHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            9888888877  89999999999999855 56777889999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHH-HHHHHHHHHHHHH
Q 011529          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWAL-IVSHFCHNWGTFI  339 (483)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  339 (483)
                      +.|++.+++.++..+..+...++++++.++.+..+.               .+..+.+++++++.. ....+........
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T PRK09874        173 PVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHM---------------REVVTSLKNPKLVLSLFVTTLIIQVATGS  237 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHH---------------HHHHHhCcCCchHHHHHHHHHHHHHHHHH
Confidence            999998888777666665555554322111111000               012234566666543 3333444445556


Q ss_pred             HHHhhHHHHHHHhCCCcc---hhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011529          340 LLTWMPTYYNQVLHFNLT---ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  416 (483)
Q Consensus       340 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (483)
                      ...+++.|..+..+....   ..+.+..+.+++.+++.+..|++.||+++|+...       .  +..............
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~-------~--~~~~~~~~~~~~~~~  308 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILI-------T--ALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH-------H--HHHHHHHHHHHHHHh
Confidence            667788888875432221   2355566667888889999999999999885322       1  111111122222222


Q ss_pred             chhHHHHHHHHHhhhhhhhhhchhhhhHhhh-ccCcceeeeeee
Q 011529          417 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYSVSIISIN  459 (483)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~  459 (483)
                      +..+...+...+.+...+...+.......+. +++++|+.++..
T Consensus       309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  352 (408)
T PRK09874        309 QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYN  352 (408)
T ss_pred             ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHH
Confidence            2333333333333333334445455555554 456789888844

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=2.8e-26  Score=230.25  Aligned_cols=351  Identities=14%  Similarity=0.125  Sum_probs=226.3

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhc--------CCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF--------NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV  171 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~  171 (483)
                      +...+..+++.++.+..+++...+++..|.+.+++        +.+..+.+++.+++.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34556667777788899999999998888888877        8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh---------h-cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHh
Q 011529          172 LGFGVVWWSIATALTPVA---------A-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL  241 (483)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~---------~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  241 (483)
                      ++++.++.+++.+..++.         + ...++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            999999988887776653         1 013567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHhh--------hccCchHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCChhhHHHhhhccc-CCCC-Cc
Q 011529          242 GSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQLRPAEKKLIVSSCA-SKEP-VK  310 (483)
Q Consensus       242 g~~~g~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~  310 (483)
                      |.++++.+++.+.        +..|||+.|++.++..++..+.. +..+++++.. .+.+.++.+...+... ..+. ..
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA  246 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence            9999988776553        35689999998887777765444 4455554321 0111111100000000 0000 00


Q ss_pred             ccchhhhhc-----ChhHHHH---------HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHH
Q 011529          311 TIPWGLILS-----KPPVWAL---------IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANL  376 (483)
Q Consensus       311 ~~~~~~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~  376 (483)
                      ..+.++.++     .+..+..         ....+......+....+.|.+.++ .|++.....+.....++..+++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~  325 (479)
T PRK10077        247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVL  325 (479)
T ss_pred             HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHH
Confidence            000111111     0111100         011111111223344566777766 7888877777777788899999999


Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH-Hhh--ccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccc
Q 011529          377 GGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLS--HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYS  452 (483)
Q Consensus       377 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  452 (483)
                      .+++.||+|+|+....+.       .........+ ...  .....+........+.+......+.......+..| +.|
T Consensus       326 ~g~l~dr~g~r~~~i~~~-------~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  398 (479)
T PRK10077        326 AIMTVDKFGRKPLQIIGA-------LGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR  398 (479)
T ss_pred             HHHHHHHhcChHHHHHhH-------HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence            999999999885332221       1111111111 111  11111222222222222222233556677777765 568


Q ss_pred             eeeeeee
Q 011529          453 VSIISIN  459 (483)
Q Consensus       453 g~~~g~~  459 (483)
                      +.++|++
T Consensus       399 ~~~~g~~  405 (479)
T PRK10077        399 GKALAIA  405 (479)
T ss_pred             HHHHHHH
Confidence            8888754

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=7.9e-26  Score=220.89  Aligned_cols=319  Identities=14%  Similarity=0.129  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      +..+.++.++.........+.+|. +.+++|.|..++|++.+++.++..++++++|+++||+|||+++..+.+...++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            444455566666677777888886 6789999999999999999999999999999999999999999998887766544


Q ss_pred             Hh---hhhh---cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          185 LT---PVAA---KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       185 ~~---~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ..   .+.+   ..+++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..+||.+++.+.+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            32   1111   12678899999999999998888889999999999999999999999999999999999999999899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (483)
                      |+..+.+..+..++..... ...++.+++  + ++  +               .+.++..+  .++...+..++......
T Consensus       177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~-~~--~---------------~~~~~~~~--~~~~~~~~~~l~~~~~~  233 (392)
T PRK12382        177 FAALALTTMVLPLLAWAFN-GTVRKVPAH--A-GE--R---------------PSLWSVVG--LIWKPGLGLALQGVGFA  233 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhccCCCCC--c-cc--C---------------chHHHHHH--HHHHhHHHHHHHHHHHh
Confidence            9987765544433322211 111111110  0 00  0               01112221  22222222333445555


Q ss_pred             HHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccch
Q 011529          339 ILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDS  418 (483)
Q Consensus       339 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (483)
                      ....+.|.|+++ .|++  ..+.......++.++++++.|++.||+++|+.....       ..+........  ...++
T Consensus       234 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~-------~~~~~~~~~~~--~~~~~  301 (392)
T PRK12382        234 VIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVS-------LLVETVGLLLL--WLAPT  301 (392)
T ss_pred             HHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHH-------HHHHHHHHHHH--HHccc
Confidence            667788888877 5654  355666677788889999999999999988643322       11111111111  12223


Q ss_pred             hHHHHHHHHHhhhhhhhhhchhhhhHhhh-ccCcceeeeeee
Q 011529          419 PAMAVLCMACSQGTDAFSQSGLYSNHQDI-APRYSVSIISIN  459 (483)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~  459 (483)
                      .+..+....+.+...+...+.......+. +++++|++.|+.
T Consensus       302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  343 (392)
T PRK12382        302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY  343 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            33333333333333333344444454454 457789888854

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=7.8e-26  Score=217.98  Aligned_cols=317  Identities=13%  Similarity=0.052  Sum_probs=226.2

Q ss_pred             hhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-----CCchH-HHHHHHHHHHHHHHhhhhhc-cc
Q 011529          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWWSIATALTPVAAK-LG  193 (483)
Q Consensus       121 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~~~~~~~~~~~~~-~~  193 (483)
                      ...++.+|.+.+++|+|.+++|+.... .+...+ .+++|+++||+     ||||. ++.+.++.++....+.+.+. .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999765 455554 99999999998     88887 56677777777666655531 25


Q ss_pred             HHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC--------chHHHHH
Q 011529          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--------WPSVFYS  265 (483)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------~~~~~~~  265 (483)
                      .+.+....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            66777778888888888899999999999999999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChh---HHHHHHHHHHHHHHHHHHHH
Q 011529          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP---VWALIVSHFCHNWGTFILLT  342 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  342 (483)
                      .++..++..+..++..+|+.++.+. ++++++.           ....+++++++|.   ++...+..++..........
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASV-PKPLTQA-----------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATV  230 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCccccc-chhHHHH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777655545444443221111 1111100           0124566777775   77777777777888888899


Q ss_pred             hhHHHHHHHhCCCcchhhHHhHHHH-HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH-Hhh-cc---
Q 011529          343 WMPTYYNQVLHFNLTESGLFCVLPW-LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLS-HV---  416 (483)
Q Consensus       343 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---  416 (483)
                      +.|.|+++ +|+++.+.+.+....+ ++.+++.+++|++.||+|+|+..       .....+........ ... ..   
T Consensus       231 ~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       231 LTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL-------LLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHHhcCccc
Confidence            99999998 8999999998887766 57789999999999999987432       11111111111111 111 11   


Q ss_pred             ----chhHHHHHHHHHhhhhhhhhhchhhhhHhhhc-cCcceeeeeee
Q 011529          417 ----DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSVSIISIN  459 (483)
Q Consensus       417 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~  459 (483)
                          +..+....+..+.....+...+.......+.. ++++|+.+|+.
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  350 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALL  350 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence                23343444444445555566666777777765 56789888753

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=1.5e-25  Score=215.39  Aligned_cols=303  Identities=28%  Similarity=0.453  Sum_probs=248.1

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh
Q 011529          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (483)
                      .+.+..+....+.....+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34556677778888888999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHH
Q 011529          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFG  267 (483)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  267 (483)
                      +.+  +++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.+....+|..++|.+++.+.+..+|++.+++.+
T Consensus        83 ~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          83 FAS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             Hhc--cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            887  899999999999999999999999999999999999999999999999999999999999999989999999988


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011529          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (483)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (483)
                      ++.++..+...+..                                       |.++...+..++..........+.|.+
T Consensus       161 ~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (352)
T cd06174         161 ILGLLLALLLLFLL---------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLY  201 (352)
T ss_pred             HHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            88777666554432                                       446677788888888889999999999


Q ss_pred             HHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011529          348 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA  427 (483)
Q Consensus       348 ~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (483)
                      .++..|.+..+.+.......++.+++.++.+++.||+++|+.        ....+..............++.+.......
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  273 (352)
T cd06174         202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL--------LLLIGLLLAALGLLLLALAPSLALLLVALL  273 (352)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            999779999999999999999999999999999999998841        111222222222222222333444444444


Q ss_pred             HhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          428 CSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      +.........+.......+..| +++++.+|..
T Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (352)
T cd06174         274 LLGFGLGFAFPALLTLASELAPPEARGTASGLF  306 (352)
T ss_pred             HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHH
Confidence            4444455556667777777665 6788888743

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=4.7e-25  Score=215.13  Aligned_cols=258  Identities=16%  Similarity=0.066  Sum_probs=184.1

Q ss_pred             HHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHH-HHHHHHHHHHHHHhh
Q 011529          110 FSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL-GFGVVWWSIATALTP  187 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~  187 (483)
                      .+..++.........+.+|. +.+++|.++.++|++.+...+...+.+++.+.+.||+||||.+ ..+.++..++..+..
T Consensus        21 ~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~  100 (393)
T PRK15011         21 LIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFA  100 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence            34456666666667777777 6788999999999998776554444444544449999999875 455566666677777


Q ss_pred             hhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcch--hHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHH
Q 011529          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (483)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  265 (483)
                      +++  +++.+++.+.+.|...+...+...+++.++.++++|  +...++.+.+.++|.++||++++.+.+++|||..|++
T Consensus       101 ~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~  178 (393)
T PRK15011        101 WNR--NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLS  178 (393)
T ss_pred             Hhh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHH
Confidence            777  788776665555544456778888888888766655  3456889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcC-hhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILLTWM  344 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  344 (483)
                      .++..++..+..+...|+.++++++.++ +.+                  ...++ +..+......+........+..+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (393)
T PRK15011        179 AAVAFIVCGVMVWLFLPSMRKELPLATG-TLE------------------APRRNRRDTLLLFVICTLMWGTNSLYIINM  239 (393)
T ss_pred             HHHHHHHHHHHHHhhcCccCCCCccccc-ccc------------------ccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888777766666655554322211100 000                  00112 223333334444445555666789


Q ss_pred             HHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      |.|+++.+|+++.+.+.+.+...++.+++.++.|++.||+++|+
T Consensus       240 p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~  283 (393)
T PRK15011        240 PLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF  283 (393)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            99998889999999998888877888899999999999999884

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.7e-26  Score=223.65  Aligned_cols=281  Identities=20%  Similarity=0.330  Sum_probs=238.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHh-hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      .+.++..++..++....+...++.. +..+.++.+....+.+.+.+++.++++++++++|.+.||++..+.+....++.+
T Consensus        43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~  122 (495)
T KOG2533|consen   43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG  122 (495)
T ss_pred             HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence            3455556666677777776555433 444778999999999999999999999999999999999998888888888888


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhh------
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI------  254 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------  254 (483)
                      +..++....+  |++.+++.|++.|+..+..+|....++..|+.+++|+..+|++.+..++|.++|.+++..+.      
T Consensus       123 ~~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~  200 (495)
T KOG2533|consen  123 LFGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG  200 (495)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence            8887777777  99999999999999999999999999999999999999999999999999999999998863      


Q ss_pred             hccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHH----hhhcc--cCCCCCcccchhhhhcChhHHHHHH
Q 011529          255 HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKL----IVSSC--ASKEPVKTIPWGLILSKPPVWALIV  328 (483)
Q Consensus       255 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  328 (483)
                      ...||||.|++.+++.++..++.++..|+.|.+..-.+++++..    .++..  ...++.+...+++.+++|.+|...+
T Consensus       201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l  280 (495)
T KOG2533|consen  201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSL  280 (495)
T ss_pred             CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHH
Confidence            34689999999999999999999999998887654433333221    11111  1112245567888999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 011529          329 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL  384 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~  384 (483)
                      ..++.....+++.+|+|.|+++..|++..++..+.....++++++.+++|.++||.
T Consensus       281 ~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  281 CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999996679999999999999999999999999999995

>PRK10054 putative transporter; Provisional

Probab=99.95  E-value=1.4e-25  Score=218.53  Aligned_cols=262  Identities=10%  Similarity=0.077  Sum_probs=205.3

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 011529          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (483)
                      .+....++.........+.+|. +.+++|++..++|++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            3445556666677777777665 667899999999999999999999999999999999999999999999999988888


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                      .+.+  +++.+++++.+.|.+.+...+...++..|.+|+++|++++++.+...++|..+||.+++.+.+ .+|+..|++.
T Consensus        91 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~  167 (395)
T PRK10054         91 PLVN--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA  167 (395)
T ss_pred             HHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence            8888  888888889888888787788899999999999999999999999999999999999998875 7999999988


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                      +++.++..+......++.++++++.+  ++              ..+.++.+|+|.++...+..++..+.......+.+.
T Consensus       168 ~~~~~i~~i~~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (395)
T PRK10054        168 AICSAFPLVFIQIWVQRSEKAIATET--GS--------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQ  231 (395)
T ss_pred             HHHHHHHHHHHHHHHhccccccccch--hh--------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHH
Confidence            87777765554443333221111100  00              011246788999988888777777777666667777


Q ss_pred             HHHHH--hCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          347 YYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       347 ~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      |....  .+.+....+.+.....+..+......|++.||.++|+
T Consensus       232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  275 (395)
T PRK10054        232 YVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP  275 (395)
T ss_pred             HHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh
Confidence            77543  3455666677777777777777788899999988773

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=1.7e-25  Score=215.48  Aligned_cols=245  Identities=13%  Similarity=0.152  Sum_probs=199.7

Q ss_pred             hhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHH
Q 011529          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLV  199 (483)
Q Consensus       120 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (483)
                      ...+++.+|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++.++.++..++.+.. ..+  +.+.+++
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l~~   92 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALLFA   92 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHHHH
Confidence            3567888999999999999999999999999999999999999999999999999998888877776 566  8888999


Q ss_pred             HHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc--CchHHHHHHHHHHHHHHHHH
Q 011529          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~~  277 (483)
                      .|++.|++.+...+....++.|+++ ++|++++++.+....+|..+++.+++.+.+..  +||+.|.+.+++.++.....
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~  171 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAW  171 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888999885 68999999999999999999999999888764  39988887766544432222


Q ss_pred             HHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcc
Q 011529          278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT  357 (483)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  357 (483)
                         .++.++++++.++               ......++++|+|.+|...+..++....+.....++|.|+++ .|.+..
T Consensus       172 ---~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~  232 (355)
T TIGR00896       172 ---IPQVRRRVAANQT---------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAA  232 (355)
T ss_pred             ---hhhhccccCCCCC---------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH
Confidence               1221111110000               001234567889999887777777777888888999999987 799999


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          358 ESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       358 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      +.+.+.+...++.++++++.|++.||+++|
T Consensus       233 ~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       233 TAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence            999999999999999999999999999655

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=2e-25  Score=216.99  Aligned_cols=316  Identities=10%  Similarity=0.079  Sum_probs=224.7

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCc----hHHHHHHHHHHHHHHHhhh
Q 011529          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK----AVLGFGVVWWSIATALTPV  188 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~  188 (483)
                      ++......+.+.+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.+...+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            444455667788899999999999999999999999999999999999999999984    3332222221  1222233


Q ss_pred             hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 011529          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (483)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  268 (483)
                      .+  ++|.+++.|++.|++.+...+...+++.++  +++|+++++......++|..+||.+++++.+++|||..|++.++
T Consensus        91 ~~--~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 AH--SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             cc--cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            45  899999999999999888889888888876  46688889999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 011529          269 LGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYY  348 (483)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (483)
                      ..++..+.. ...++++++.++    +++         .++...++++++|+|.+|...+..++..........+.|.|+
T Consensus       167 ~~~~~~~~~-~~~~~~~~~~~~----~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  232 (382)
T PRK11128        167 GVASMLLGQ-LLRPTIMPQGES----RQQ---------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW  232 (382)
T ss_pred             HHHHHHHHH-HccCCCCCcccc----ccc---------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            555443333 223322111110    000         001123577899999999888888888778778888899999


Q ss_pred             HHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 011529          349 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC  428 (483)
Q Consensus       349 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (483)
                      ++ .|.+..+.|.+.++..++.++..++.+++.||+++|+.         +..+.+...+.+......++.+..++...+
T Consensus       233 ~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (382)
T PRK11128        233 QA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL---------LLLSAICGVVRWGLMGSTTALPWLIVIQIL  302 (382)
T ss_pred             HH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            77 89999999999998888999999999999999998742         222223333333333334444544444444


Q ss_pred             hhhhhhhhhchhhhhHhhhccCcceeeeee
Q 011529          429 SQGTDAFSQSGLYSNHQDIAPRYSVSIISI  458 (483)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  458 (483)
                      .+...+...+....+..+.+++++++..+.
T Consensus       303 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAARPGSEVIRLQAL  332 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHhhhHHHHHH
Confidence            343344445555666666666666666663

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.9e-24  Score=197.52  Aligned_cols=339  Identities=15%  Similarity=0.158  Sum_probs=259.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .+..+...+++.++......+.+|.+.+.++++..|.+++..++..++.+..++.|++.+|+|+|+-+++++.++++++.
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            45556666777788888889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhh-hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc-------
Q 011529          185 LTPVA-AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------  256 (483)
Q Consensus       185 ~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------  256 (483)
                      ++.-+ ...++..++++.++.|.|.+...+..+.++..+.++++..+.+++.+..+++|.+++|++++.++.+       
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            88522 2227888999999999999999999999999999998999999999999999999999999988772       


Q ss_pred             ------------cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHH
Q 011529          257 ------------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVW  324 (483)
Q Consensus       257 ------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (483)
                                  -.|+++|...+...++..+.....+.+..++..+...+.+              +....+++++|.++
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~  239 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASG--------------SAGLSSLFQNKHLR  239 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccc--------------cchHHHHHhChHHH
Confidence                        1377788877777666655554433222111111100000              11355789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 011529          325 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL  404 (483)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  404 (483)
                      ...+..+++-..+..+..|++.|+.+..|.+..+.+...+.++++.++|++++.++..|+...|.        +...+ +
T Consensus       240 ~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~--------Laf~a-~  310 (422)
T COG0738         240 LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKY--------LAFYA-L  310 (422)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--------HHHHH-H
Confidence            99999999999999999999999999889999999999999999999999999999999987642        22121 1


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeeeecCCCCce
Q 011529          405 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINILRAPGSH  467 (483)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~g~~  467 (483)
                      .....+......+..+.+..+. +.+.+.+...|...+...+.-+++...+.+...+...|+.
T Consensus       311 ~~ill~~~~~l~~g~v~~~~l~-~ig~F~simfPTIfslal~~l~~~ts~~s~~l~maivGGA  372 (422)
T COG0738         311 IAILLLLAVALIGGVVALYALF-LIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMAIVGGA  372 (422)
T ss_pred             HHHHHHHHHHHhcChHHHHHHH-HHHHHhHHHHHHHHHHHHhccCccccccceeeeeheecch
Confidence            2222222222333334333333 4444455667777877777777777777765554444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.95  E-value=4.4e-25  Score=215.71  Aligned_cols=323  Identities=17%  Similarity=0.161  Sum_probs=223.7

Q ss_pred             HHHhhhhhhhHHhhhhhhhhcC--CChhhHHHHHHH-----HHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 011529          114 LLCNMDRVNMSIAILPMSAEFN--WNPATVGLIQSS-----FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (483)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g--~s~~~~g~~~~~-----~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (483)
                      +.++++...++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3566777778877777776654  445556554443     333445688999999999999999999999999999998


Q ss_pred             hhhhcccHH--------HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhh----
Q 011529          187 PVAAKLGLP--------FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI----  254 (483)
Q Consensus       187 ~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----  254 (483)
                      .+.+  +++        .+++.|+++|++.+...+...+++.|++++++|++..++.+.+..+|.++++.++..+.    
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLLP--SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhCC--ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8887  553        57888999999999999999999999999999999999999999999999998877653    


Q ss_pred             ----hccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChh--HHHHHH
Q 011529          255 ----HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP--VWALIV  328 (483)
Q Consensus       255 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  328 (483)
                          +.++||+.|++.+++.++...... ..+++++..+     +++        +++....++++.+++++  ++...+
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  226 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYLRR-NLEETPVFEK-----AQE--------KHKKKRGPIRETLTKHRKPFLLGLG  226 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHHH-hcCCChhHHH-----HHh--------ccccccCCHHHHHHhchHHHHHHHH
Confidence                357899999887766555433322 2222211100     000        00111234556666655  777777


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH-
Q 011529          329 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA-  407 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-  407 (483)
                      ..++..........+.|.|+++.+|.+..+.+.......++.+++.++.|++.||+++|+....      ......... 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~------~~~~~~~~~~  300 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLII------FTVLAALLAV  300 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH------HHHHHHHHHH
Confidence            7777777778888999999988789999999999999999999999999999999998842111      111111111 


Q ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeee
Q 011529          408 FFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISI  458 (483)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~  458 (483)
                      .........+..+.......+.+.......+.......+..| +.++++.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  352 (394)
T TIGR00883       301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASL  352 (394)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeee
Confidence            111111122233333333333333333445556677777665 568888875

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=2.8e-26  Score=233.93  Aligned_cols=282  Identities=16%  Similarity=0.224  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (483)
                      +..+.+..+......+..+..++.+.++|+++..+.|++.+.+.+++.++.++.|++.||+|||+++.++.++++++.++
T Consensus        35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            34445567777777888889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhh-------------------------------------------------cccHHHHHHHHHHHhhhhhcchhHHH
Q 011529          186 TPVAA-------------------------------------------------KLGLPFLLVVRVFMGIGEGVAMPAMN  216 (483)
Q Consensus       186 ~~~~~-------------------------------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~  216 (483)
                      +++.+                                                 ...+..++++|+++|+|.+..++...
T Consensus       115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~  194 (633)
T TIGR00805       115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI  194 (633)
T ss_pred             HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence            87653                                                 00245678899999999999999999


Q ss_pred             HHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc----------------------CchHHHHHHHHHHHHHH
Q 011529          217 NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF----------------------GWPSVFYSFGSLGTVWF  274 (483)
Q Consensus       217 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------g~~~~~~~~~~~~~~~~  274 (483)
                      +++.|++|+++|++++++.+.+..+|..+|+++++++.+.+                      +|+..|++.+++.++..
T Consensus       195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987643                      16667888887777766


Q ss_pred             HHHHHhccCCCCCCCCCC--hhhHHHhhhcccCC-C------CCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 011529          275 TVWLSKAHSSPAEDPQLR--PAEKKLIVSSCASK-E------PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (483)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (483)
                      +.++.++++.|+...+.+  ..+++......... .      +.....++.+++||.++...+..++.....+++.+|+|
T Consensus       275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP  354 (633)
T TIGR00805       275 IPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLP  354 (633)
T ss_pred             HHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655555544433211111  00000000000000 0      00113466789999999999999999999999999999


Q ss_pred             HHHHHHhCCCcchhhHHhHHHHH-HHHHHHHHHHHHHHHHhhc
Q 011529          346 TYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       346 ~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~g~~  387 (483)
                      .|+++++|+++.+++++.....+ +.+++.+++|+++||++.+
T Consensus       355 ~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       355 KYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            99999999999999999887776 6789999999999999855

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=6.3e-26  Score=224.57  Aligned_cols=340  Identities=19%  Similarity=0.176  Sum_probs=256.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .+..++.+.++..++..+....++.+..+..-|+..++++..+..+...+.++++|.++||++||++++.+.++.++..+
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            34455677777788888888888887778888999999999999999999999999999999999999999888776554


Q ss_pred             Hhhh---hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchH
Q 011529          185 LTPV---AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       185 ~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  261 (483)
                      .+.+   ....+.|.+++..++.|++.+...|+.++++.+..|+++...++++.+...++..++||.++|.++..+|-.+
T Consensus        91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~  170 (524)
T PF05977_consen   91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAA  170 (524)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4433   2233788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 011529          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (483)
                      .|.+.++..++..+.....+++.+++ +..++.-.+.           -+..++.+.++|.+...++..++..+....+.
T Consensus       171 ~f~inalsfl~~i~~l~~~~~~~~~~-~~~~e~~~~~-----------l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~  238 (524)
T PF05977_consen  171 AFLINALSFLISILALLRWKPPPPPS-SLPRERFFSA-----------LREGLRYVRSSPPLRSVLLRSFLFNLFASAVW  238 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccccc-ccchhhhhhh-----------HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHH
Confidence            99988877766555544443332211 1111111111           12346667778888777776667776667777


Q ss_pred             HhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 011529          342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM  421 (483)
Q Consensus       342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (483)
                      ..+|.+.++.+|.++...|++.+..++++++|.++.+++.+|++++++         +..+.++.+..+..+...++.+.
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l---------v~~~~~~~a~~~~~lal~~~~~~  309 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL---------VLLASLLFALALLLLALSPSFWL  309 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh---------hHHHHHHHHHHHHHHhcchHHHH
Confidence            889999999999999999999999999999999999999888876632         22333334444444455556666


Q ss_pred             HHHHHHHhhhhhhhhhchhhhhHhhhcc-CcceeeeeeeecCCCC
Q 011529          422 AVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISINILRAPG  465 (483)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~g  465 (483)
                      .++.+++.+...........+..+...| +.+|+++++......|
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g  354 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG  354 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH
Confidence            5555555555555555556666666555 4599999865443333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=1.1e-24  Score=219.18  Aligned_cols=289  Identities=13%  Similarity=0.104  Sum_probs=205.6

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhc-----CCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF-----NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG  173 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  173 (483)
                      .+.++..+.++.++.+..+++...++...|.+.+++     +.+..+.+++.+...++..++.+++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            345667778888899999999999999888876642     355667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcc----cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhh
Q 011529          174 FGVVWWSIATALTPVAAKL----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF  249 (483)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  249 (483)
                      ++.++..++.++.+++++.    +++.++++|++.|++.+...+....++.|++|+++|+++.++.+....+|.++++.+
T Consensus        91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~  170 (502)
T TIGR00887        91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV  170 (502)
T ss_pred             HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888776510    167899999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhh-----------------------ccCchHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCCChhhHHHhh---
Q 011529          250 SPFLIH-----------------------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE---DPQLRPAEKKLIV---  300 (483)
Q Consensus       250 ~~~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---  300 (483)
                      +..+..                       .++||+.+.+.++..++..+. .+..||+|+-   +.+.+++..+...   
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~~  249 (502)
T TIGR00887       171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAVL  249 (502)
T ss_pred             HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence            876532                       247999998777666554443 4455666541   1111111110000   


Q ss_pred             h-----cccC------CCCCcccchhhhhcC---hhHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhH-
Q 011529          301 S-----SCAS------KEPVKTIPWGLILSK---PPVWA----LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL-  361 (483)
Q Consensus       301 ~-----~~~~------~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  361 (483)
                      +     ..++      +++..+.++++++++   ++.+.    .....++....+++...+.|.++++ .|++....+. 
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~  328 (502)
T TIGR00887       250 QVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNN  328 (502)
T ss_pred             ccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchh
Confidence            0     0000      000111346666653   22211    1223333444556677788999976 7887543221 


Q ss_pred             -----------HhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          362 -----------FCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       362 -----------~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                                 ...+..++.+++.++.+++.||+|||+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~  367 (502)
T TIGR00887       329 AYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI  367 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Confidence                       1233445667788999999999999854

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.94  E-value=7.4e-24  Score=211.61  Aligned_cols=266  Identities=15%  Similarity=0.162  Sum_probs=205.9

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-----CCchH-HHHHHHHHHH
Q 011529          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAV-LGFGVVWWSI  181 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~~~  181 (483)
                      .+++..+.++.........+|.+.++.|.+..++|.+ +...... ++.+++|+++||+     |||+. +..+.++.++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            3445555667777788888999999999999999997 3333343 5899999999999     99885 6677777777


Q ss_pred             HHHHhhhhh-cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-ccCc
Q 011529          182 ATALTPVAA-KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGW  259 (483)
Q Consensus       182 ~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~  259 (483)
                      +...+++.+ ..+++.+.+.+++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            776665542 22688889999999999999999999999999999999999999999999999999999999998 5799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (483)
                      |..|++.+++.++..+..+. .+++++..++ ++..++           ....+++++++++..|...+..++.......
T Consensus       174 r~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~-~~~~~~-----------~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~  240 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLL-APEPTDTIPV-PKTLEQ-----------AVVAPLRDFFGRNNAWLILLLIVLYKLGDAF  240 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCcccccc-ccchhh-----------hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence            99999998877766555444 3443221111 000000           0012466778888887777666777677777


Q ss_pred             HHHhhHHHHHHHhCCCcchhhHHhH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          340 LLTWMPTYYNQVLHFNLTESGLFCV-LPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       340 ~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ...+.++|+.+..|++..+.+.+.. ...++.+++.+++|++.||+++|+
T Consensus       241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~  290 (491)
T PRK11010        241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR  290 (491)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            7788888987778999999999875 556799999999999999999874

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=2.1e-23  Score=204.31  Aligned_cols=265  Identities=14%  Similarity=0.050  Sum_probs=205.3

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-----CCch-HHHHHHHHHHHH
Q 011529          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKA-VLGFGVVWWSIA  182 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~  182 (483)
                      ++..++.++.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| ++.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            345677788888888899999999999999999999777665  58899999999999     7775 688888888777


Q ss_pred             HHHhhhhhc-ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc-cCch
Q 011529          183 TALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWP  260 (483)
Q Consensus       183 ~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~  260 (483)
                      ...+.+.+. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            777666531 25777888888888888888999999999999999999999999999999999999999999885 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011529          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (483)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (483)
                      ..|++.+++.++..+.. ...++++.++++.+ +.++.           ...++++++|||.++...+..++........
T Consensus       162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~-~~~~~-----------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~  228 (402)
T PRK11902        162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPPR-SLGEA-----------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFA  228 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCcccccccc-hhHHH-----------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence            99999888776655443 33343322211111 00000           1224677899999988777777766655544


Q ss_pred             HHhhHHHHHHHhCCCcchhhHHhHHHH-HHHHHHHHHHHHHHHHHhhcC
Q 011529          341 LTWMPTYYNQVLHFNLTESGLFCVLPW-LTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       341 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ..+.+.++.+..|+++.+.+++....+ ++.+++.++++++.||+++|+
T Consensus       229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~  277 (402)
T PRK11902        229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR  277 (402)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            455666777778999999999886654 468899999999999999874

>TIGR00898 2A0119 cation transport protein

Probab=99.94  E-value=1.2e-24  Score=219.77  Aligned_cols=318  Identities=18%  Similarity=0.122  Sum_probs=216.8

Q ss_pred             HhhhhhhhhcCCC---hhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q 011529          125 IAILPMSAEFNWN---PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (483)
Q Consensus       125 ~~~~~~~~~~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (483)
                      +..+.+.++++++   ..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.++.++++  +++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence            5677899999999   99999999999999999999999999999999999999999999999999998  999999999


Q ss_pred             HHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhc
Q 011529          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+   ||+.+++.++..++..+.. +..
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999998876653   9999999888877766655 444


Q ss_pred             cCCCCCC-CCCChhhH-HHh----------------hh--cccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 011529          282 HSSPAED-PQLRPAEK-KLI----------------VS--SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (483)
Q Consensus       282 ~~~~~~~-~~~~~~~~-~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (483)
                      +++++.. .+.+.++. +..                ..  ..+..++.++..+++++++|.++...+...+..+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            5544310 00010000 000                00  0000011123467888999998877666555544443333


Q ss_pred             HhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 011529          342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM  421 (483)
Q Consensus       342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (483)
                      ..++.+..+ .+.+.   .......++..+++.++.+++.||+|||+..       .....+................+.
T Consensus       344 ~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  412 (505)
T TIGR00898       344 YGLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTM-------AASLLLAGVALLLLLFVPVDLYFL  412 (505)
T ss_pred             HHHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-------HHHHHHHHHHHHHHHHcCCCchHH
Confidence            333433333 45443   2334455677888999999999999988421       111111111111111112222233


Q ss_pred             HHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          422 AVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      .+....++.+......+....+..|..| +.|++++|+.
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~  451 (505)
T TIGR00898       413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVC  451 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHH
Confidence            3333333434344444556667777766 4577777743

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=3.5e-23  Score=196.04  Aligned_cols=335  Identities=13%  Similarity=0.084  Sum_probs=241.6

Q ss_pred             hhhhhhHHhhhhhhhhcCCChhh-HHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHH
Q 011529          118 MDRVNMSIAILPMSAEFNWNPAT-VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (483)
Q Consensus       118 ~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (483)
                      -.+...+...|.+.+++|++..+ .|.+.+++..++.++.++.|+++||+|.|+++.++.+..++..++.++++  +++.
T Consensus        40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~  117 (511)
T TIGR00806        40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWH  117 (511)
T ss_pred             HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            34677888899999999999999 99999999999999999999999999999999999999999999999998  8999


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH--HHHHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF--GSLGTVWF  274 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~--~~~~~~~~  274 (483)
                      +.+.|++.|++.|... +...++..++|+++|+++.|+...+..+|.+++++++++ +..+||++-+.+.  .+...+..
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS  195 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999999999999999999999999999999 5568998654432  22222222


Q ss_pred             HHHHHhccCCCCC---CCCC--C---hhhHHHhhhccc--CCC-C---------CcccchhhhhcChhHHHHHHHHHHHH
Q 011529          275 TVWLSKAHSSPAE---DPQL--R---PAEKKLIVSSCA--SKE-P---------VKTIPWGLILSKPPVWALIVSHFCHN  334 (483)
Q Consensus       275 ~~~~~~~~~~~~~---~~~~--~---~~~~~~~~~~~~--~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (483)
                      +++.++.|..++.   +++.  +   ..+.+.......  ..+ +         .-..+++...+||.+....+-+.+..
T Consensus       196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~  275 (511)
T TIGR00806       196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS  275 (511)
T ss_pred             HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence            3333333332221   0000  0   000000000000  000 0         01123455678898888888888888


Q ss_pred             HHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          335 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  414 (483)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (483)
                      .+++.+.+|.....++.-+-.+...|.+-++..+.+++..+..|++-.++.+.       ....+.+..++.+..++...
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~  348 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMS  348 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhh
Confidence            88888888888888775342233667788888888888888888885444322       12344444444555566666


Q ss_pred             ccchhHHHHHHHHHhhhhhhhhhchhhhhHhh-hccCcceeeeeeeecCC
Q 011529          415 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSVSIISINILRA  463 (483)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~  463 (483)
                      ..++.++..+..++......+..+.....+.. +..+..|..+|+|...+
T Consensus       349 ~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       349 QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHH
Confidence            77777877777777777776766665555554 44556799999886633

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.93  E-value=8.6e-24  Score=208.37  Aligned_cols=349  Identities=15%  Similarity=0.147  Sum_probs=269.3

Q ss_pred             cCChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHH
Q 011529           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (483)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  177 (483)
                      ...+.|.+....++..+........++.+.+.+.++++.+..+++|+.++......+..|+.+.+.||+|.|.+.++|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            55677888888888888887778888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcccHHHHHHH-HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          178 WWSIATALTPVAAKLGLPFLLVV-RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      +..++.++..+++  ++|.+++. -++.|+|.+..+......+..+| +++|+.++|+...+.++|.++-|.+...+.+.
T Consensus       120 v~~~g~~lssF~~--~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~  196 (509)
T KOG2504|consen  120 VAALGLLLSSFAT--SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK  196 (509)
T ss_pred             HHHHHHHHHHHHh--hHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence            9999999999999  88877666 68899999999999999999888 79999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCC----------------------------CChh----hHHHhhhccc
Q 011529          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ----------------------------LRPA----EKKLIVSSCA  304 (483)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~----~~~~~~~~~~  304 (483)
                      +|||+.+++.+.+.+-..+.....+|..+...+.                            ....    ......+...
T Consensus       197 ~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (509)
T KOG2504|consen  197 YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD  276 (509)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence            9999999999988877777766666632221100                            0000    0000000000


Q ss_pred             CCC--CCcccch---hhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHH
Q 011529          305 SKE--PVKTIPW---GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGW  379 (483)
Q Consensus       305 ~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~  379 (483)
                      +..  ..+....   .++++++.++.+.+...+...++.....++|.|.++ .|++..+++.+.++.++..++++++.|+
T Consensus       277 ~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~  355 (509)
T KOG2504|consen  277 KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGL  355 (509)
T ss_pred             cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhh
Confidence            000  1111112   478899999999999999999999999999999996 8999999999999999999999999999


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhc-cCcceeeee
Q 011529          380 IADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSVSIIS  457 (483)
Q Consensus       380 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g  457 (483)
                      +.|+...+       ...+..++++..++........+..+.++....+.+...+...........+.. .++-..+.|
T Consensus       356 laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~G  427 (509)
T KOG2504|consen  356 LADKPGIR-------ALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYG  427 (509)
T ss_pred             hcCccccc-------hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHH
Confidence            99998855       334555555555555555555555555554444444444444443333444443 344555555

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.93  E-value=1e-23  Score=232.76  Aligned_cols=270  Identities=15%  Similarity=0.130  Sum_probs=197.9

Q ss_pred             HHHHHHHHHhhhhhhhHHhhh-hhhhhcCCCh-hhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHH---HHHHHHH
Q 011529          108 LCFSAFLLCNMDRVNMSIAIL-PMSAEFNWNP-ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG---VVWWSIA  182 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~---~~~~~~~  182 (483)
                      ..++..+..++....+..... .+..+.+.+. ...++..+++.+++.++++++|+++||+|||+++...   .++.++.
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~   98 (1140)
T PRK06814         19 TQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAAL   98 (1140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHH
Confidence            334444444444433333333 3444444433 4578889999999999999999999999999976432   2222222


Q ss_pred             HHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHH
Q 011529          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (483)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  262 (483)
                      .+.....+  +++.++++|+++|++.+...|+..+++.+++++++|++++|+.+++..+|.++||+++|++.+..+|++.
T Consensus        99 ~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~  176 (1140)
T PRK06814         99 AIYGFHLN--SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVIL  176 (1140)
T ss_pred             HHHHHHHh--hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            22223335  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 011529          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (483)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (483)
                      |+..+++.++..++.+. .++.+......+.... ...        .....++.+.++|.+|...+..++..+....+.+
T Consensus       177 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (1140)
T PRK06814        177 VALLMGIAVLGWLASLF-IPKTGNAAPDLKIDRN-IIR--------STITLLKYAKADKRIWLAILGISWFWLVGAVVLS  246 (1140)
T ss_pred             HHHHHHHHHHHHHHHhh-CCCCCCCCCCCeeccc-hHH--------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            85544444444444333 3333221111110000 000        0012467788999999998888888888888889


Q ss_pred             hhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      ++|.|+++.+|.++...+++.+..+++.++|.++.|++.++..+++.
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~  293 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY  293 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee
Confidence            99999999899999999999999999999999999999987766543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.93  E-value=7.8e-23  Score=199.95  Aligned_cols=273  Identities=11%  Similarity=0.012  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      ++.+...+++.+.....+.+.+|. +.+++|.++.++|++.+++.++..+++++.|+++||+|||+.++.+....+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            344555666677777778888877 4567899999999999999999999999999999999999999877666654433


Q ss_pred             Hhh---hhhc---ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          185 LTP---VAAK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       185 ~~~---~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ...   +.+.   ..++.+++.+++.|++.+...+....+..+..  ++++..+|......++|.++||.+++.+.+ .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC
Confidence            221   1110   02334566788889988888888888877753  334567788889999999999999998865 59


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (483)
                      |+..|++.+++.++..++.+...++++++++. +  +.   .+  .++++.+..+.++++|||.++...+..++....+.
T Consensus       161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  232 (396)
T TIGR00882       161 PQIVFWLGSGFALILMLLLMFAKPKAPSSATV-A--NA---LG--ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYD  232 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-h--cc---cc--cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            99999998888877665555444433221110 0  00   00  00111122356788999998877777666666666


Q ss_pred             HHHHhhHHHHHHHh---CCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          339 ILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       339 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      ....+.+.|+++.+   +.+....+...++..+..+++.+..+++.||+++|+.
T Consensus       233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~  286 (396)
T TIGR00882       233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA  286 (396)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            67778888888755   4455667888888888899999999999999998853

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=1.4e-23  Score=232.64  Aligned_cols=320  Identities=16%  Similarity=0.131  Sum_probs=218.0

Q ss_pred             hhHHhhhhhhhhcCCC--hhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh---hhhcccHHH
Q 011529          122 NMSIAILPMSAEFNWN--PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP---VAAKLGLPF  196 (483)
Q Consensus       122 ~~~~~~~~~~~~~g~s--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~  196 (483)
                      ......+.+..+++.+  ....+++.+++.++..++++++|+++||+|||++++++.++.+++.++..   ..+  +++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~  105 (1146)
T PRK08633         28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG--WFWL  105 (1146)
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHH
Confidence            3344445555566654  34579999999999999999999999999999999988877665555443   335  7899


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc--------c-CchHHHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------F-GWPSVFYSFG  267 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~-g~~~~~~~~~  267 (483)
                      ++++|++.|++.+...++..+++.|++|+++|++++|+.+.+..+|.++|+++++++.+.        + +|.+.+.+..
T Consensus       106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  185 (1146)
T PRK08633        106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL  185 (1146)
T ss_pred             HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999876        2 3444444433


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011529          268 SLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY  347 (483)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (483)
                      +...+..++..+..++.+.......+.+..       .........++.+++++.++...+..++..........++|.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (1146)
T PRK08633        186 LAVAVLGLIFAYRLPKVPAAAPEVFDKKKY-------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAY  258 (1146)
T ss_pred             HHHHHHHHHHHhcCcCCCCCCccccccccc-------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            333333333333334433221111000000       0000012246677888998888877777777777888899999


Q ss_pred             HHHHhCCCcc-hhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011529          348 YNQVLHFNLT-ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM  426 (483)
Q Consensus       348 ~~~~~g~~~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (483)
                      +.+.+|++.. ..+++.+...++.+++.++.+++.||+++++....+         .++.++.++......+.+..++..
T Consensus       259 ~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  329 (1146)
T PRK08633        259 AKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLG---------ALGLALSLFLLPTAPSLASVLVLF  329 (1146)
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHH---------HHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9998999998 999999999999999999999999999877533211         111111111111222333333333


Q ss_pred             HHhhhhhhhhhchhhhhHhhhc-cCcceeeeeee
Q 011529          427 ACSQGTDAFSQSGLYSNHQDIA-PRYSVSIISIN  459 (483)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~  459 (483)
                      ++.+.+.+...+...+...+.. ++.+|+++|+.
T Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~  363 (1146)
T PRK08633        330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAAN  363 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHH
Confidence            3333333333444556665554 56689888744

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=1.1e-22  Score=200.36  Aligned_cols=269  Identities=12%  Similarity=0.033  Sum_probs=179.4

Q ss_pred             HHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh
Q 011529          110 FSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (483)
                      ....++.....+...+.+|. +.+++|+|+.++|++.++..++..++++++|+++||+|||+++.++..+.+++......
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   95 (420)
T PRK09528         16 SLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI   95 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            34445555555566667666 55669999999999999999999999999999999999999988776665544332111


Q ss_pred             ---hhc---ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHH
Q 011529          189 ---AAK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (483)
Q Consensus       189 ---~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  262 (483)
                         .+.   ..+...++..++.|.+.....+....+..+.  .++++..+|......++|..++|.+++.+.+ .+|+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~  172 (420)
T PRK09528         96 YVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQIN  172 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHh
Confidence               110   0111123334444444334344444444332  3556778899999999999999999999876 489999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 011529          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (483)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (483)
                      |++.+++.++..+..+...++++++.+..+++++        .+++....+.+..+|+|.+|.+.+..++..........
T Consensus       173 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~  244 (420)
T PRK09528        173 FWLGSGSALILLVLLFFAKPDAPSTAKVANALGA--------NASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQ  244 (420)
T ss_pred             HHHHHHHHHHHHHHHhcccccccchhhhccchhc--------ccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHH
Confidence            9988877777666655544443222110000000        00111122345678899887766665555555566666


Q ss_pred             hhHHHHHHHh---CCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          343 WMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       343 ~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      +.|.|+.+..   +.+..+.+.+.++..++.+++.++.|++.||+++|+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  294 (420)
T PRK09528        245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA  294 (420)
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence            7888877643   4566678888888889999999999999999999853

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.92  E-value=6.1e-22  Score=178.46  Aligned_cols=263  Identities=14%  Similarity=0.184  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHH
Q 011529          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (483)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (483)
                      +..+..+.+..+-.--..+..+|.++.+.+++|+|.+..|++.++..++..+.+++..++..|+|.++.+..++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444444444444445677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc-CchH
Q 011529          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPS  261 (483)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~  261 (483)
                      .++-...   +.+.++.+-.+.|.+.+..+...++++.+.| +++-+..+|++....++|..+++.+.-.+.++. |||.
T Consensus        91 ~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          91 ILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            9887665   4678899999999999999999999999999 677899999999999999999999998888876 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 011529          262 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (483)
                      ...+.+..+++.++.++....+....... .+                 ..+-..++|+|.-|.+.+.+.+++..++...
T Consensus       167 aL~~WAl~allAl~~WlPq~~r~~~~~~~-~~-----------------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~  228 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALREQAASIA-TK-----------------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVI  228 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccc-cc-----------------cccccccccCchhHHHHHHHHhhHHHHHHHH
Confidence            99999999998887776543111100000 00                 1112357899999999999999999999999


Q ss_pred             HhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      .|+|.++.| .|+|..++|.+.+...+..+...+....+.+|..+++
T Consensus       229 ~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r  274 (395)
T COG2807         229 GWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR  274 (395)
T ss_pred             HHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999 7999999999999999999999999999999977664

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=2.9e-22  Score=199.11  Aligned_cols=350  Identities=13%  Similarity=0.067  Sum_probs=232.7

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhh-hh--cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh-cCCchHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMS-AE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSI  181 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~  181 (483)
                      +..+....+...+..+...+.+|.+. ++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.++
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            34445556666666666777777754 44  89999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcc---hhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE---RSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      +.+++++.+  +++.+++.+++.|++.+...+...++++|++|+++   |++++++.+...++|.++||.+++++.++.|
T Consensus        92 g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        92 GHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999988887  78888899999999999999999999999998754   8889999999999999999999999999899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCC---CCCCCCCChhhHHHhh--------------h---cccCC------------
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSS---PAEDPQLRPAEKKLIV--------------S---SCASK------------  306 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------------~---~~~~~------------  306 (483)
                      |++.|.+.++..++..+......+..   +++.++.++++++...              .   ..+..            
T Consensus       170 ~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLA  249 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999988765555444433322221   1111111111100000              0   00000            


Q ss_pred             --------CCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcch----hhHHhHHHHHHHHHHH
Q 011529          307 --------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTMAFSA  374 (483)
Q Consensus       307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~i~~  374 (483)
                              ...+.....+..|...+..+.+...++...+....+.++.+.++..+.+...    .+++.++..+..++..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~  329 (475)
T TIGR00924       250 VIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGS  329 (475)
T ss_pred             HHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHH
Confidence                    0000001111112223444555556666666677777888887754443222    6688888888888887


Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh---------ccchhHHHHHHHHHhhhhhhhhhchhhhhHh
Q 011529          375 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS---------HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ  445 (483)
Q Consensus       375 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (483)
                      ++..++..|.++|+.......+.  .++.++.+..+....         ...+.++.+....+.........|...+...
T Consensus       330 p~~~~~~~~l~~~~~~~~~~~k~--~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~  407 (475)
T TIGR00924       330 PVLAMIWTRLGRKGKDPTTPLKF--TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWT  407 (475)
T ss_pred             HHHHHHHHHHHhCCCCCCcHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            77666666666642211111111  222222222221111         1235565666666666667777888888888


Q ss_pred             hhccC-cceeeeeee
Q 011529          446 DIAPR-YSVSIISIN  459 (483)
Q Consensus       446 ~~~~~-~~g~~~g~~  459 (483)
                      +..|+ .+|+.+|+.
T Consensus       408 ~~aP~~~~g~~~g~~  422 (475)
T TIGR00924       408 KIAPQRLMGQMLGMW  422 (475)
T ss_pred             HhCCHHHHHHHHHHH
Confidence            87764 589988854

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.8e-24  Score=192.49  Aligned_cols=238  Identities=19%  Similarity=0.183  Sum_probs=209.9

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhc
Q 011529          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (483)
Q Consensus       131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (483)
                      .++.+-+..++|++++...+.+.+.+++.|.+.||+|+|..+++|+.++..+++++++..  +++.++++|.++|+|.+.
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHH
Confidence            344566888999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             chhHHHHHHhhhcCCc-chhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 011529          211 AMPAMNNILSKWVPVA-ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP  289 (483)
Q Consensus       211 ~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (483)
                      .+++..++++|.+|++ +|++++|+...+.++|..+||+++|++.+..|.+.+|+++++++++-..+.++..++.+.+.+
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence            9999999999999865 579999999999999999999999999999999999999999999988887777665433322


Q ss_pred             CCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHH
Q 011529          290 QLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT  369 (483)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  369 (483)
                      ...                 +..++++++++|.++.........+.........++.+..+....+..+.|+.+....+.
T Consensus       256 ~~~-----------------~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~  318 (464)
T KOG3764|consen  256 STE-----------------QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLS  318 (464)
T ss_pred             ccc-----------------cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccc
Confidence            111                 123466889999999888777777777778888889988888886666999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 011529          370 MAFSANLGGWIADTLVSK  387 (483)
Q Consensus       370 ~~i~~~~~g~l~dr~g~~  387 (483)
                      .+++..+.|.+.||++..
T Consensus       319 y~ig~~lfg~la~k~~~~  336 (464)
T KOG3764|consen  319 YAIGTNLFGKLADKYPHL  336 (464)
T ss_pred             hhccCchHHHHHHhcCch
Confidence            999999999999999955

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.91  E-value=1.6e-21  Score=190.34  Aligned_cols=265  Identities=12%  Similarity=0.062  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHH--HHHHHHHHHHHHhhHHH-HHhhcCCchHHHHHHHHH-HH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLI--QSSFFWGYLLTQIAGGI-WADTVGGKAVLGFGVVWW-SI  181 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~--~~~~~~~~~~~~~~~g~-l~dr~g~r~~~~~~~~~~-~~  181 (483)
                      +..+...++.++...+...+.+|.+.++.|.|..++|++  .++..+...+.+|+++. ..||+||||..++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455677788899999999999999999999999999997  46678888888888844 789999999875555332 21


Q ss_pred             HHHHhh---hhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          182 ATALTP---VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       182 ~~~~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ......   .... ....++...++.+++.+...+...++..|..++++++...+....+..+|.++|+...+++.++.|
T Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g  161 (390)
T TIGR02718        83 CLASLALVGPDVA-GAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG  161 (390)
T ss_pred             HHHHHHcCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222222   2221 233444555666677788888889999999988888988999999889999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTF  338 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (483)
                      ||..|++.+++.++..+..+...+++++++++ ++.               +..++++++|+|.++...+..++......
T Consensus       162 w~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  225 (390)
T TIGR02718       162 QRPAFLLVACVPLASLVCVLWLKDRAVASPEA-PLA---------------RRASLFRFFRRPLAWSLLALALLSAMTAV  225 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-chh---------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence            99999999988877666655544433211110 000               01235678899999888888888888888


Q ss_pred             HHHHhhHHHHHHHhCCCcchhhHHhHHHHH-HHHHHHHHHHHHHHHHhhcC
Q 011529          339 ILLTWMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       339 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ....+.+.|++| .|+++++++.+....++ ..+++.++.|++.||+++|+
T Consensus       226 ~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~  275 (390)
T TIGR02718       226 SGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR  275 (390)
T ss_pred             HHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            888899999988 79999999999888764 66778899999999999884

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=1.2e-21  Score=194.89  Aligned_cols=359  Identities=14%  Similarity=0.135  Sum_probs=218.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhh-hhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh-cCCchHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAIL-PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIA  182 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~  182 (483)
                      .+..++...+...+..+.....++ ++.+++|.+..+.+++.+.+.....+..+++|+++|| +|||++++++.+++.++
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g   94 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG   94 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence            344455555556566555555444 4678899999999999999998888999999999999 99999999999999999


Q ss_pred             HHHhhhhhcccHH-HHHHHHHHHhhhhhcchhHHHHHHhhhcCCc--chhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          183 TALTPVAAKLGLP-FLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       183 ~~~~~~~~~~~~~-~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      .+.++++.  +.. .+++.|+++|+|.|...+...+++.|.+|++  +|++++++++...++|..+||.+++++.++.||
T Consensus        95 ~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207         95 YFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             HHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            99988876  433 4557899999999999999999999999876  457899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCChhhHHHh------------hhc-ccCCCCC-------------
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAE----DPQLRPAEKKLI------------VSS-CASKEPV-------------  309 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~-~~~~~~~-------------  309 (483)
                      |+.|++.++..++..+..... ++..++    .++.+.+.....            ... .......             
T Consensus       173 ~~~F~i~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  251 (489)
T PRK10207        173 SVTYNLCGAGLIIALLVYFAC-RGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI  251 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-chhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999998655443333333222 211111    101000000000            000 0000000             


Q ss_pred             ----cccchhhhhcChhHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHhCCCc----chhhHHhHHHHHHHHHHHHHHHH
Q 011529          310 ----KTIPWGLILSKPPVWALIVS--HFCHNWGTFILLTWMPTYYNQVLHFNL----TESGLFCVLPWLTMAFSANLGGW  379 (483)
Q Consensus       310 ----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~i~~~~~g~  379 (483)
                          ......+.+|+|.+....+.  ..+....+....+.++.+.++..+.+.    .....+.+...+..++..++.++
T Consensus       252 ~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~  331 (489)
T PRK10207        252 IFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAG  331 (489)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHH
Confidence                00000134555554433322  334444455555777778775333221    12234445555667778888899


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----HHhh-c--cchhHHHHHHHHHhhhhhhhhhchhhhhHhhhc-cC
Q 011529          380 IADTLVSKGLSVTTVRKIMQSIGFLGPAFFL-----TQLS-H--VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PR  450 (483)
Q Consensus       380 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  450 (483)
                      +.||.++|+.-.....+......+...+...     .... .  ..+.++.+....+......+..+...+...+.. ++
T Consensus       332 l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~  411 (489)
T PRK10207        332 IYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH  411 (489)
T ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH
Confidence            9999998863222112222222211111111     1111 1  123344444444444444455555555555544 45


Q ss_pred             cceeeeee-eecCCCCc
Q 011529          451 YSVSIISI-NILRAPGS  466 (483)
Q Consensus       451 ~~g~~~g~-~~~~~~g~  466 (483)
                      .+|.++|. +..+..|.
T Consensus       412 ~~g~~~g~~~l~~~ig~  428 (489)
T PRK10207        412 LMGFILGMWFLTQAAAF  428 (489)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            68888884 33333333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.90  E-value=4.6e-22  Score=197.36  Aligned_cols=257  Identities=14%  Similarity=0.071  Sum_probs=191.0

Q ss_pred             hhhhhHHh-hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh----cCCch-HHHHHHHHHHHHHHHhhhhhcc
Q 011529          119 DRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKA-VLGFGVVWWSIATALTPVAAKL  192 (483)
Q Consensus       119 ~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~~~  192 (483)
                      ....+... .+.+.+++|+++.++|++.++..+...+..|+.|+++||    +|||| .++.+.+..+++.+++...+..
T Consensus        14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~   93 (437)
T TIGR00792        14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF   93 (437)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence            33444443 455778899999999999999999999999999999998    67744 5777878888777777665521


Q ss_pred             ----cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcC-CcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-------ccCch
Q 011529          193 ----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWP  260 (483)
Q Consensus       193 ----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~  260 (483)
                          ..+.+++.+++.+++.+...+...++..|..+ +++|++..++.+.+..+|..+++.+.+.+..       ..+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence                14566777888898888888888888888874 6899999999999999998887776665542       45799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011529          261 SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL  340 (483)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (483)
                      +.+.+.+++.++..+...+..+|++++.++.++ +           +......++.+++||.++...+..++........
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKERYSEIPKNIE-K-----------KLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK  241 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-c-----------CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            999988888877766665555554321111000 0           0011224667889999998888888887777776


Q ss_pred             HHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          341 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       341 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ..+.+.|.+...+ +....+.+..+..++.+++.++.+++.||+|+|+
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~  288 (437)
T TIGR00792       242 NGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI  288 (437)
T ss_pred             cchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            6666777666555 4566677777788999999999999999999884

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=2.1e-21  Score=191.54  Aligned_cols=275  Identities=15%  Similarity=0.137  Sum_probs=200.1

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh
Q 011529          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  188 (483)
                      +++.....++.....+..++.+..++|- .....|+.+...++..+..++.|+++|.+|||..++.+.++..++.++++.
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            4444444445555556778889999995 467788999999999999999999999999999999999999999999999


Q ss_pred             hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 011529          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (483)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  268 (483)
                      ++  |...++++..+.|+|.|... .....++|..|.|.|....++......+....++.++..+..+.+|||.|++..+
T Consensus       128 A~--~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  128 AQ--NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             CC--cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence            99  99999999999999977654 4566689999999998888877776666666788888777777899999999988


Q ss_pred             HHHHHHHHHHHhccCCCCCCC--C-CChhh-HHHh--------------------hhcc-----cC--------------
Q 011529          269 LGTVWFTVWLSKAHSSPAEDP--Q-LRPAE-KKLI--------------------VSSC-----AS--------------  305 (483)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~--------------------~~~~-----~~--------------  305 (483)
                      ...+.++..+++..+++.++.  + ....+ -++.                    ....     +.              
T Consensus       205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L  284 (599)
T PF06609_consen  205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL  284 (599)
T ss_pred             HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH
Confidence            877766554444333322211  1 11111 1110                    0000     00              


Q ss_pred             ------C---C-CCcccchhhhhcC-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcc---hhhHHhHHHHHHHH
Q 011529          306 ------K---E-PVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT---ESGLFCVLPWLTMA  371 (483)
Q Consensus       306 ------~---~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~  371 (483)
                            +   . +.+..+. +++|+ |.+...++..++....++....+.|......++-++.   ..++.....+++..
T Consensus       285 v~F~~wE~~~~~~~Pl~P~-~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~  363 (599)
T PF06609_consen  285 VAFVVWEWFGAPKDPLFPH-RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSC  363 (599)
T ss_pred             HHHHHhhhhccCCCCcCCH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHH
Confidence                  0   0 1112233 46676 4566666677777777788888888888877776653   56778888888899


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 011529          372 FSANLGGWIADTLVSKG  388 (483)
Q Consensus       372 i~~~~~g~l~dr~g~~~  388 (483)
                      +|.++.|.+..++++-|
T Consensus       364 ~g~~i~g~l~~~ir~~K  380 (599)
T PF06609_consen  364 AGAVILGLLFSKIRHIK  380 (599)
T ss_pred             HHHHHHHHHHHHccchh
Confidence            99999999998887553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00889 2A0110 nucleoside transporter

Probab=99.89  E-value=5.1e-21  Score=187.62  Aligned_cols=319  Identities=11%  Similarity=-0.002  Sum_probs=205.6

Q ss_pred             HHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCC-chHHHHHHHHHHHHHHHhh
Q 011529          110 FSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATALTP  187 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~  187 (483)
                      ...+++.+.....+.+.++. +.+++|++..++|++.++..++..++++++|+++||+|+ |+++.++.++..++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            44455556666666555554 677899999999999999999999999999999999965 7788888888878877777


Q ss_pred             hhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhh--------cCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW--------VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      +.+  +++.+++.+++.|++.+...+...++..+.        .....|.+..|      .+|.++||.+++.+....+|
T Consensus        88 ~~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~  159 (418)
T TIGR00889        88 QVT--TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN  159 (418)
T ss_pred             Hhc--CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence            777  899999999999998777777666654322        22223444443      57889999999887433234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (483)
                      . .|++.+++.++..++. +..+|.++.+++.+...++           ....+.+.++|+|.++.+.+..++.......
T Consensus       160 ~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  226 (418)
T TIGR00889       160 I-QLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKV-----------MLGLDAFILFKNKRMAIFFFFSMLLGAPLQI  226 (418)
T ss_pred             H-HHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHH-----------HhhhhHHHHhcCCCeeeHHHHHHHHHhHHHH
Confidence            4 4555555555544443 3444433221111100000           0011245678999988888887777776767


Q ss_pred             HHHhhHHHHHHHhCCCc--------chhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 011529          340 LLTWMPTYYNQVLHFNL--------TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT  411 (483)
Q Consensus       340 ~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (483)
                      ...+.+.|+++ .|.++        ...+...++..+..+++.+..|++.||+|+|+.         +..+.++..+.+.
T Consensus       227 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~---------l~~~~~~~~v~~~  296 (418)
T TIGR00889       227 TNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV---------MLLSLVAWALRFG  296 (418)
T ss_pred             HHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---------HHHHHHHHHHHHH
Confidence            77888888877 56543        566888999999999999999999999998842         2222222222221


Q ss_pred             Hhhc-cc---hhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          412 QLSH-VD---SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       412 ~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      .... ..   ..+..++...+.+...+...+.......+..| +.+|+++|+.
T Consensus       297 l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~  349 (418)
T TIGR00889       297 FFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLF  349 (418)
T ss_pred             HHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            1111 11   12222222333333333444445556666555 6688888855

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.3e-20  Score=179.67  Aligned_cols=313  Identities=16%  Similarity=0.151  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc-ccHHHHHHHHHHHhhhhhcchhHHHHHH
Q 011529          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAMNNIL  219 (483)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~  219 (483)
                      .+.+.+++.+|.++|+++.|+++||+|||..+.++.++..++.++..++.. .++..++++|++.|+..+.......-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            467788999999999999999999999999999998888887776655431 1678999999999999999999999999


Q ss_pred             hhhcCCcchhHHHHHHHHHHHhHHHHHHhhHH-Hhh-hccCchHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCh
Q 011529          220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSP-FLI-HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE----DPQLRP  293 (483)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~-~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  293 (483)
                      .|..|++.||....+.+.+..+|.+++..++. .+. +.-.|++.+....+.+++..+...+ .||.|+-    +.+.++
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~-~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF-LPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc-CCCCcchHHHHcCCHHH
Confidence            99999999999999999999999999966653 333 3345998888888777776655544 4555541    111100


Q ss_pred             ---------------hhHHHhhh--cccCCCCCcccchhhhhcChhHHHHH-----HHHHHHHHHHHHHHHhhHHHHHHH
Q 011529          294 ---------------AEKKLIVS--SCASKEPVKTIPWGLILSKPPVWALI-----VSHFCHNWGTFILLTWMPTYYNQV  351 (483)
Q Consensus       294 ---------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  351 (483)
                                     ++.++..+  +.++.++.+..+++++++++..+.-.     +.......+.+.+..|...++++ 
T Consensus       221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-  299 (485)
T KOG0569|consen  221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-  299 (485)
T ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-
Confidence                           11111111  11122223566788999887765432     22333334456667777777777 


Q ss_pred             hCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccch--h-HHHHHHHHH
Q 011529          352 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDS--P-AMAVLCMAC  428 (483)
Q Consensus       352 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~  428 (483)
                      .|++..++.+.....++...+.++++.++.||+|||.++..+...  ..+..++.............  . ......+..
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~--~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~  377 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSL--MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF  377 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999766554421  11222222222222212211  1 112233333


Q ss_pred             hhhhhhhhhchhhhhHhhhccC-cceeeee
Q 011529          429 SQGTDAFSQSGLYSNHQDIAPR-YSVSIIS  457 (483)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g  457 (483)
                      .........|.-+-+..|+.|+ .|..+++
T Consensus       378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s  407 (485)
T KOG0569|consen  378 IISFAIGPGPIPWFIGAELFPQSARSAAQS  407 (485)
T ss_pred             HHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence            3334444455667777777654 4666654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=1.1e-20  Score=190.44  Aligned_cols=284  Identities=18%  Similarity=0.155  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHhhh--hhhhHHhhhhhhhhc-----CCCh--hhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHH
Q 011529          106 VVLCFSAFLLCNMD--RVNMSIAILPMSAEF-----NWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV  176 (483)
Q Consensus       106 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  176 (483)
                      .....++.+..+.+  .....+....+.++.     ..+.  .+.+++.+...++..+++++.|+++|++|||+.++++.
T Consensus        47 ~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~  126 (513)
T KOG0254|consen   47 ALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAV  126 (513)
T ss_pred             HHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            33344444444443  344455555555432     2222  35599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          177 VWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      +++.++.+++++++  |++.++++|++.|+|.|......+.+++|..|++.||...+..+....+|..++..++....+.
T Consensus       127 ~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~  204 (513)
T KOG0254|consen  127 VLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV  204 (513)
T ss_pred             HHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence            99999999999999  9999999999999999999999999999999999999999999999999999995554444332


Q ss_pred             -cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CChhhHHH-------------------hh-hcc-cCCCCCcccc
Q 011529          257 -FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-LRPAEKKL-------------------IV-SSC-ASKEPVKTIP  313 (483)
Q Consensus       257 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------------------~~-~~~-~~~~~~~~~~  313 (483)
                       .+||..+.+..+.+++..+. ..+.|++|+.--+ .+..+.+.                   .. ... +.........
T Consensus       205 ~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (513)
T KOG0254|consen  205 YAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKAS  283 (513)
T ss_pred             CccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccccc
Confidence             48999988888888887777 6666666542110 01100000                   00 000 0000011112


Q ss_pred             hhhhhc----ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          314 WGLILS----KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       314 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      ++++++    ++.++...+..+.+..+.+....|.+.+++. .|.+... .....+.++..+++.+++..+.||+|||++
T Consensus       284 ~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l  361 (513)
T KOG0254|consen  284 WGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL  361 (513)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            333332    2334455666666666667778888888887 5766443 455556677788888888999999999976


Q ss_pred             chhHH
Q 011529          390 SVTTV  394 (483)
Q Consensus       390 ~~~~~  394 (483)
                      +..+.
T Consensus       362 ll~s~  366 (513)
T KOG0254|consen  362 LLFGA  366 (513)
T ss_pred             HHHhH
Confidence            66554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=9.5e-21  Score=169.94  Aligned_cols=360  Identities=13%  Similarity=0.130  Sum_probs=232.3

Q ss_pred             cCChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHH
Q 011529           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV  177 (483)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  177 (483)
                      ..+.+|........+.....+.......+.|.+.+..|.+..+..++......+..+++..+|.++|++|||+...+..+
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            34556666666666666666655566667788888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc
Q 011529          178 WWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (483)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (483)
                      ..++...+...++  |+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+.-..+.++
T Consensus       152 ~t~v~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  152 VTGVFGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999  999999999999999998 888889999999988888777666 999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCChhhHH----------------------------H----hhhccc
Q 011529          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQLRPAEKK----------------------------L----IVSSCA  304 (483)
Q Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------------------~----~~~~~~  304 (483)
                      ||||.+........+.+....+ .++.++-. .+.++.+.-                            +    ..+.+.
T Consensus       228 gwr~~l~~~~~pl~~~a~f~~w-~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~  306 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAARFLVW-VYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS  306 (528)
T ss_pred             hHHHHHHHHHhHHHHHHHHHhh-cccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence            9999988888665555544444 44443310 000000000                            0    000000


Q ss_pred             CCCCCcccchhhhhcC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------------HhCCC--cchhhHH
Q 011529          305 SKEPVKTIPWGLILSK---PPVWALIVSHFCHNWGTFILLTWMPTYYNQ-----------------VLHFN--LTESGLF  362 (483)
Q Consensus       305 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~g~~--~~~~~~~  362 (483)
                      ...++...+...++..   +....+...++...+.+++........++.                 ..+-.  ...--.=
T Consensus       307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence            0111112223333321   222233333444444444443333333222                 11100  1111111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhh
Q 011529          363 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYS  442 (483)
Q Consensus       363 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (483)
                      ..+..+....|.++.++++||+|||+.         ++..++...++.+........-...++.+.+-.+........+.
T Consensus       387 llitslaefPGlLIt~~iverlGRKkT---------Mal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYv  457 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKT---------MALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYV  457 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhH---------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEE
Confidence            234467888999999999999999952         23333333333333332222223333333444444455566788


Q ss_pred             hHhhhccCc-ceeeee--eeecCCCCceeEEe
Q 011529          443 NHQDIAPRY-SVSIIS--INILRAPGSHCILC  471 (483)
Q Consensus       443 ~~~~~~~~~-~g~~~g--~~~~~~~g~~~~~~  471 (483)
                      +..++.|.. |+++.|  -.+.|..|..+|.+
T Consensus       458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~i  489 (528)
T KOG0253|consen  458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVI  489 (528)
T ss_pred             ecCcccchhhhhcchhhhhhHHhhhhhhhhHH
Confidence            888988843 555554  66778888888754

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.88  E-value=5.6e-21  Score=172.61  Aligned_cols=322  Identities=16%  Similarity=0.040  Sum_probs=202.8

Q ss_pred             hhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhh
Q 011529          129 PMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE  208 (483)
Q Consensus       129 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  208 (483)
                      ...+..+.+....|++.+.+++...+.++.+|.++||+|||+++.++.+..++...+.+++.  |+..+++.|++.|+..
T Consensus        58 a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~k  135 (451)
T KOG2615|consen   58 AIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFK  135 (451)
T ss_pred             hhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhcc
Confidence            34444455677789999999999999999999999999999999999999999999999999  8977777799999997


Q ss_pred             hcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh---ccC-chHHH--HHHHHHHHHHHHHHHHhcc
Q 011529          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFG-WPSVF--YSFGSLGTVWFTVWLSKAH  282 (483)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~g-~~~~~--~~~~~~~~~~~~~~~~~~~  282 (483)
                      + ......++++|.+++|+|+.+++..+...++|.++||.++|++..   ..| +..++  ++..++...-.....++.|
T Consensus       136 g-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp  214 (451)
T KOG2615|consen  136 G-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP  214 (451)
T ss_pred             C-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6 457789999999999999999999999999999999999999987   223 21222  1111111111122233344


Q ss_pred             CCCCCCCCCChhh-HHHhhhcccCCCCCcccchhhhhcChhH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC
Q 011529          283 SSPAEDPQLRPAE-KKLIVSSCASKEPVKTIPWGLILSKPPV-------WALIVSHFCHNWGTFILLTWMPTYYNQVLHF  354 (483)
Q Consensus       283 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  354 (483)
                      |+-+.+++.++.. ..+..+..++..+.....--..+||+..       ..+.+..+.+...+.....+.+.+-++.+|+
T Consensus       215 ETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~  294 (451)
T KOG2615|consen  215 ETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGY  294 (451)
T ss_pred             ccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCC
Confidence            4422222221110 0000000000001000001123344432       2344445555555555555555555677899


Q ss_pred             CcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhh
Q 011529          355 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA  434 (483)
Q Consensus       355 ~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (483)
                      ++.+.|-+++..++.+.+......+..+|.+..       ........+..+.-.++..........+.....+-.+...
T Consensus       295 ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  295 SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA  367 (451)
T ss_pred             ChhhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            999999999998888887777766666665421       1112222222333333333334444444444444445555


Q ss_pred             hhhchhhhhHhhhcc-Ccceeeeeeee
Q 011529          435 FSQSGLYSNHQDIAP-RYSVSIISINI  460 (483)
Q Consensus       435 ~~~~~~~~~~~~~~~-~~~g~~~g~~~  460 (483)
                      ...+.+...+....| +++|++.|+..
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~  394 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFR  394 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHH
Confidence            566667777666554 67899887543

>PTZ00207 hypothetical protein; Provisional

Probab=99.87  E-value=3.6e-19  Score=177.10  Aligned_cols=284  Identities=15%  Similarity=0.125  Sum_probs=204.9

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      ..++|..+.......... ...+.++.+.+.+.+++|+|..+++++.++.. ....++++.|++.||+|+|+++.++.++
T Consensus        23 e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll  100 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTV  100 (591)
T ss_pred             ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            345666555444444333 33445667788899999999999999988744 4456788899999999999999999999


Q ss_pred             HHHHHHHhhhhhc----ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHH-HHhhHHHh
Q 011529          179 WSIATALTPVAAK----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT-GLAFSPFL  253 (483)
Q Consensus       179 ~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l  253 (483)
                      ..++.++++++..    .+++.+.+.|++.|+|.+...+.....+.+++| ++||++.|+...+.++|.++ +++..+++
T Consensus       101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988711    178999999999999999998999999999995 78999999999999999976 55555544


Q ss_pred             hhccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCC---C--CChhhHH------------------H------------
Q 011529          254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP---Q--LRPAEKK------------------L------------  298 (483)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~------------------~------------  298 (483)
                      .  .+|+..|++.+++.++..++.+.+.++++.+..   +  .+++++.                  .            
T Consensus       180 ~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~  257 (591)
T PTZ00207        180 S--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV  257 (591)
T ss_pred             H--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHH
Confidence            3  368888888888888877777666655542211   0  0111111                  0            


Q ss_pred             -------------------------hh---------------------h-ccc-------------------------C-
Q 011529          299 -------------------------IV---------------------S-SCA-------------------------S-  305 (483)
Q Consensus       299 -------------------------~~---------------------~-~~~-------------------------~-  305 (483)
                                               ..                     + ..+                         + 
T Consensus       258 yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (591)
T PTZ00207        258 FLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDY  337 (591)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccC
Confidence                                     00                     0 000                         0 


Q ss_pred             CCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcch--hhHHhHHHHHHHHHHHHHHHHHHHH
Q 011529          306 KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE--SGLFCVLPWLTMAFSANLGGWIADT  383 (483)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~i~~~~~g~l~dr  383 (483)
                      ..+.....+.+.+++..+|.+++..++.......+...+..+.+..-|.+.+.  ...+.++.++++.+|++..|.+...
T Consensus       338 ~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~  417 (591)
T PTZ00207        338 IAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW  417 (591)
T ss_pred             CCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH
Confidence            00111125666778899999999999988888888888888888832763333  3337889999999999999998844


Q ss_pred             Hhhc
Q 011529          384 LVSK  387 (483)
Q Consensus       384 ~g~~  387 (483)
                      ..+|
T Consensus       418 ~~~~  421 (591)
T PTZ00207        418 SQKR  421 (591)
T ss_pred             HHhh
Confidence            4443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.87  E-value=3.6e-19  Score=178.07  Aligned_cols=347  Identities=14%  Similarity=0.108  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh-cCCchHHHHHHHHHHHHHH
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~  184 (483)
                      ..++...+...+..+.+...++. +.+++|++..+.+++.+.+........+++|+++|| +|||+++.++.++.+++.+
T Consensus        24 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~  103 (500)
T PRK09584         24 YLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYA  103 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555 668899999999998888877777777899999999 5999999999999999988


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcc--hhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  262 (483)
                      ++.+++. +.+.+++.+++.|++.|...+...+++.+++|+++  |..++++++.+.++|..+||.+++++.++.|||+.
T Consensus       104 l~~~~~~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~  182 (500)
T PRK09584        104 LVAWSGH-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVA  182 (500)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence            8877641 45667788999999999988999999999997643  45688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH---hccCCCCCCCCCChhhHHHh------------hhcccCCCCC------------------
Q 011529          263 FYSFGSLGTVWFTVWLS---KAHSSPAEDPQLRPAEKKLI------------VSSCASKEPV------------------  309 (483)
Q Consensus       263 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~------------------  309 (483)
                      |.+.++..++..+..+.   ..++..++.+..+.+.....            ......+.+.                  
T Consensus       183 F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (500)
T PRK09584        183 FALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGK  262 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            99887655544332222   22222111110000000000            0000000000                  


Q ss_pred             cccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--hCCCc------chhhHHhHHHHHHHHHHHHHHHHHH
Q 011529          310 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHFNL------TESGLFCVLPWLTMAFSANLGGWIA  381 (483)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~------~~~~~~~~~~~~~~~i~~~~~g~l~  381 (483)
                      .....++.-+ ++.+.. +..++....++......+.++...  .+.+.      ...+++.++..+..++..++.+++-
T Consensus       263 ~~~~~~~~~~-~~~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~  340 (500)
T PRK09584        263 EAFAMKGAAR-RKMIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIY  340 (500)
T ss_pred             HHhhcCHHHH-HHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHH
Confidence            0000011111 222222 222233444455555555554431  11221      2256667777777777777777777


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc-------chhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccce
Q 011529          382 DTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV-------DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSV  453 (483)
Q Consensus       382 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g  453 (483)
                      +|.++|...   ..+..+...+...++..+.....       -+.++.+....+.........|...+...+..| +.+|
T Consensus       341 ~~l~~r~~~---~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg  417 (500)
T PRK09584        341 NKMGDRLPM---PHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMG  417 (500)
T ss_pred             HHhCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHH
Confidence            777665321   12222222222222222211111       113344445555555556667777777777665 5699


Q ss_pred             eeeeee
Q 011529          454 SIISIN  459 (483)
Q Consensus       454 ~~~g~~  459 (483)
                      ..+|..
T Consensus       418 ~~~g~~  423 (500)
T PRK09584        418 FIMGSW  423 (500)
T ss_pred             HHHHHH
Confidence            999844

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.85  E-value=2.5e-18  Score=168.44  Aligned_cols=353  Identities=14%  Similarity=0.159  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-CCchHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIAT  183 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~  183 (483)
                      +..++...+...+..+.+...+|. +.+++|+++.+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..++.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~   90 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH   90 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            444444455555555556666666 5667899999999999999999999999999999999 99999999999999888


Q ss_pred             HHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCc--chhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchH
Q 011529          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  261 (483)
                      +++..... +...+.+...+.++|.|...+...+++.|.+|++  +|.+++++.+...++|..++|.+.+++.+..||++
T Consensus        91 lll~~~~~-~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~  169 (493)
T PRK15462         91 VVLGASEI-HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM  169 (493)
T ss_pred             HHHHHhhc-chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence            76654321 2233444444555666777777889999999875  69999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCC----CCCCCChhhHHH---------------hhhc-ccCCCCC------------
Q 011529          262 VFYSFGSLGTVWFTVWLSKAHSSPA----EDPQLRPAEKKL---------------IVSS-CASKEPV------------  309 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------~~~~-~~~~~~~------------  309 (483)
                      .|.+.++..++..+..+...+..++    ++++.++++...               .... ...+...            
T Consensus       170 ~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
T PRK15462        170 GFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLG  249 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998776554444443332211111    011111110000               0000 0000000            


Q ss_pred             -----cccchhhhhcChh--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC----cchhhHHhHHHHHHHHHHHHHHH
Q 011529          310 -----KTIPWGLILSKPP--VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFN----LTESGLFCVLPWLTMAFSANLGG  378 (483)
Q Consensus       310 -----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~i~~~~~g  378 (483)
                           ...+....-|+|-  +..+.+...++...+....+.+..|.++..+.+    +...+++.++..+..++..++.+
T Consensus       250 ~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a  329 (493)
T PRK15462        250 VLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLA  329 (493)
T ss_pred             HHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHH
Confidence                 0000000011221  223333444444444555566666666642211    12356777888888888888877


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh----c---cchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccC-
Q 011529          379 WIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS----H---VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-  450 (483)
Q Consensus       379 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  450 (483)
                      ++-.|..+|+.-.....+..+...+...++..+...    .   ..++++++....+......+..|...+...+..|+ 
T Consensus       330 ~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~  409 (493)
T PRK15462        330 WVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPG  409 (493)
T ss_pred             HHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHH
Confidence            776676433211112223333333333333222211    1   12445556666666666777788888888888874 


Q ss_pred             cceeeeeee
Q 011529          451 YSVSIISIN  459 (483)
Q Consensus       451 ~~g~~~g~~  459 (483)
                      .+|..+|..
T Consensus       410 ~~g~~mg~w  418 (493)
T PRK15462        410 VTGVLTGIY  418 (493)
T ss_pred             HHHHHHHHH
Confidence            588888844

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.85  E-value=9.8e-19  Score=168.56  Aligned_cols=324  Identities=13%  Similarity=0.106  Sum_probs=227.0

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcC-CchHHHHHHHHHHHHHHHhhh
Q 011529          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-GKAVLGFGVVWWSIATALTPV  188 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~~  188 (483)
                      ...+++.+...+.+.|.++.+.++.|.|..|+|.+.++..+..++.++++|.++||.+ +|+++.+..++.++.......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666677777888899999999999999999999999999999999999999985 577777777777776666666


Q ss_pred             hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhh-HHHhhhccCc---hHHHH
Q 011529          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF-SPFLIHRFGW---PSVFY  264 (483)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~l~~~~g~---~~~~~  264 (483)
                      .+  +++.+++..++..+......|...++..+...  +++.-.|.....+++|.+++... ++.+....++   ...++
T Consensus        88 ~~--~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   88 SS--SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             hc--cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            66  88888888888888888888999999888874  55667888889999998888654 2333333332   34455


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (483)
                      +.+...++.....+. .|+.+.+++..++.++.            ...+..+++|+|+++...+..++.........++.
T Consensus       164 i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~~------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~  230 (400)
T PF03825_consen  164 IAAILSLLLAGFALF-LPKTPPKRSAKESVKKL------------LGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFF  230 (400)
T ss_pred             HHHHHHHHHHHHHHh-CCCCccccccCCCcccc------------cchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444333333 34433221111111100            01123468999999999999999999999999999


Q ss_pred             HHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHH
Q 011529          345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV-DSPAMAV  423 (483)
Q Consensus       345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  423 (483)
                      +.|+++..|.+....+.+.++..++.++..+..+++.+|+|.+         .++.++.+..++-+...... ++.+...
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~~~~~~~~~  301 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYFSDPWPFIV  301 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            9999994337888888888888899999999999999999976         35555566666666555444 2322222


Q ss_pred             HHHH----HhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          424 LCMA----CSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       424 ~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      ....    +-+...+........+..+..| +.++++.++.
T Consensus       302 ~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~  342 (400)
T PF03825_consen  302 ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLY  342 (400)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHH
Confidence            2222    2333344445556666666555 5577777744

>PRK09669 putative symporter YagG; Provisional

Probab=99.84  E-value=1.2e-18  Score=172.89  Aligned_cols=252  Identities=13%  Similarity=0.060  Sum_probs=174.6

Q ss_pred             hhhHHh-hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh----cCCc-hHHHHHHHHHHHHHHHhhhhhcc--
Q 011529          121 VNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGK-AVLGFGVVWWSIATALTPVAAKL--  192 (483)
Q Consensus       121 ~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~~~~~~~~~~~~--  192 (483)
                      ..+..+ ...+.+++|+++.++|.+.++..+...+..|+.|+++||    +||| +.++.+.+..+++.++....+..  
T Consensus        26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~  105 (444)
T PRK09669         26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGA  105 (444)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCc
Confidence            333433 445888899999999999999999999999999999998    6774 55666777777776655444411  


Q ss_pred             --cHHHHHHHHHHHhhhhhcchhHHHHHHhhhc-CCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-------ccCchHH
Q 011529          193 --GLPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWPSV  262 (483)
Q Consensus       193 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~~~  262 (483)
                        .++.+++..++.+.+.........++.+|+. ++++|.+..++......+|..+++.+...+..       ..+|+..
T Consensus       106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~  185 (444)
T PRK09669        106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA  185 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence              2455666666777777777778889999988 45889999999998888988888766554433       2467777


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 011529          263 FYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (483)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (483)
                      +.+.+++.++..+..++..+|+.+++++.+               ......++.++|||.++.+.+..++..........
T Consensus       186 ~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~---------------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~  250 (444)
T PRK09669        186 MMVMGLLGVVLFFCCFFMTKERYTPEVDNS---------------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGG  250 (444)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEecCCCCcCC---------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhh
Confidence            777777776665555544444322111000               00123466788999999888777776666655555


Q ss_pred             hhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          343 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ..++|.+...+ ++...+.+.....+..+++.++.+++.||+|+|+
T Consensus       251 ~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~  295 (444)
T PRK09669        251 ATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR  295 (444)
T ss_pred             hhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            55555554333 3334445555566778888999999999999884

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.83  E-value=6.2e-19  Score=174.04  Aligned_cols=253  Identities=17%  Similarity=0.224  Sum_probs=197.9

Q ss_pred             HhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHh----hcCCchH-HHHHHHHHHHHHHHhhhh-h-cc----c
Q 011529          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAV-LGFGVVWWSIATALTPVA-A-KL----G  193 (483)
Q Consensus       125 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~-~~~~~~~~~~~~~~~~~~-~-~~----~  193 (483)
                      ...+.+.+.+|+++..+|.+..+..+..++..|+.|.++|    |+||||. ++++.+..+++.+++... + ..    .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            3355578888999999999999999999999999999999    7897665 567888888888777655 3 11    2


Q ss_pred             HHHHHHHHHHHhhhhhcchhHHHHHHhhhcC-CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc-------CchHHHHH
Q 011529          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYS  265 (483)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~~~~  265 (483)
                      ...+.+..++..++.........++..|+.+ +++|.+..++.+.+..+|..+...+.+.+.+..       +|++...+
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2345677777799999999999999999997 478999999999999999987777766665432       58888888


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 011529          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (483)
                      .+++.++..++..+..+|++++.++.++             +......++.+++||.++.+.+..++............+
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~  249 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQEK-------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP  249 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccccccccc-------------ccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence            8888888777777766662111111110             111133577889999999999999999899988888999


Q ss_pred             HHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 011529          346 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV  391 (483)
Q Consensus       346 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~  391 (483)
                      +|.++..|.+ ...+.+.....++.+++.++.+++.||+|+|+...
T Consensus       250 y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~  294 (428)
T PF13347_consen  250 YYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI  294 (428)
T ss_pred             HHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh
Confidence            9999988866 56677778888999999999999999999997543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.83  E-value=2.1e-17  Score=161.30  Aligned_cols=267  Identities=14%  Similarity=0.084  Sum_probs=186.3

Q ss_pred             HHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHh----hcCCchHHHHH-HHHHHHHHHHhhh
Q 011529          114 LLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGGKAVLGFG-VVWWSIATALTPV  188 (483)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~~~~~~~~~~  188 (483)
                      +-..+......+.++.+.+++|.+..+.+++..+..+...+.+|+.|+++|    |+|||+.++++ .+...++.+++++
T Consensus        14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        14 AGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            333455666667777788999999999999999999999999999999999    59999998764 5666666666666


Q ss_pred             hhcccH-----------------HHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcch--hHHHHHHHHHHHhHHHHHHhh
Q 011529          189 AAKLGL-----------------PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAF  249 (483)
Q Consensus       189 ~~~~~~-----------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~  249 (483)
                      ++  +.                 +..+++..+..++.....+...++++|.+|+++|  +.++++.+.+.++|.++|+.+
T Consensus        94 ~~--~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~  171 (477)
T TIGR01301        94 AA--DIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA  171 (477)
T ss_pred             Cc--hhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54  32                 2334444455667788888899999999998765  689999999999999999999


Q ss_pred             HHHh--hhcc-------------CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccch
Q 011529          250 SPFL--IHRF-------------GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPW  314 (483)
Q Consensus       250 ~~~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (483)
                      +++.  .+.+             +.+..|++.+++.++..++..+..+|.+...++..++++  .   .+.++......+
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~--~---~~~~~~~~~~~~  246 (477)
T TIGR01301       172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE--A---APPSKHGEEAFF  246 (477)
T ss_pred             HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh--c---ccccccchhhhH
Confidence            9875  2211             568889998888888877777777775432211110000  0   000000111123


Q ss_pred             hhhhc-----ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HhCCCcch----------hhHHhHHHHHHHHHHHHHHH
Q 011529          315 GLILS-----KPPVWALIVSHFCHNWGTFILLTWMPTYYNQ-VLHFNLTE----------SGLFCVLPWLTMAFSANLGG  378 (483)
Q Consensus       315 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------~~~~~~~~~~~~~i~~~~~g  378 (483)
                      +++++     .|.++.+++..++..++.+.+..|.+.|..+ .++-++..          ..+....+.+...+.+++..
T Consensus       247 ~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~  326 (477)
T TIGR01301       247 GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGME  326 (477)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33332     4678999999999999999999999888775 45433211          12333444555567777888


Q ss_pred             HHHHHHhhc
Q 011529          379 WIADTLVSK  387 (483)
Q Consensus       379 ~l~dr~g~~  387 (483)
                      ++.+|+|+|
T Consensus       327 ~l~~~~g~~  335 (477)
T TIGR01301       327 KLCRGWGAG  335 (477)
T ss_pred             HHHHHhccc
Confidence            899999853

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=1.1e-17  Score=155.23  Aligned_cols=282  Identities=14%  Similarity=0.124  Sum_probs=219.1

Q ss_pred             ccccCChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHH
Q 011529           95 WWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF  174 (483)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  174 (483)
                      ..+-.++||.+++++.+..+.+.+.+..+++........+| +....-|...+|++.+....+.+-|+.||+|-|....+
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            34567789999999888888888888888888777888888 88888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcc----cHH--HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHh
Q 011529          175 GVVWWSIATALTPVAAKL----GLP--FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLA  248 (483)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~----~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  248 (483)
                      +..+.+++..+-..+...    .++  ....+..+.+.+.-........+..-|+++++|..+..+-.++..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            999999999876554321    344  67788888888887777777788889999999999999999999999999988


Q ss_pred             hHHHhhhcc------CchH--HHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcC
Q 011529          249 FSPFLIHRF------GWPS--VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK  320 (483)
Q Consensus       249 ~~~~l~~~~------g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (483)
                      +...+..+-      .|..  .|+..+++..+.+++..+..+++|+...........         +..-..+.+..++|
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n  265 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKN  265 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcC
Confidence            888877643      2443  344445555544455555555544433322221111         01123457788999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      +++..+.+.+.+....+++..+.+-.-+.. .|.+...+|.......+++++++++.|.+.||.++-
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f  331 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF  331 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            999999888888888888887777666655 578888999999999999999999999999998765

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.82  E-value=7e-18  Score=168.47  Aligned_cols=268  Identities=12%  Similarity=0.037  Sum_probs=183.1

Q ss_pred             HHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHh----hcCC-chHHHHHHHHHHHHHH
Q 011529          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD----TVGG-KAVLGFGVVWWSIATA  184 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~~  184 (483)
                      ++.+...+....+..+++. +.+.+|+++..+|.+..+..+..++..|+.|.++|    |+|| |+.++++.+..+++..
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            3444444555555555444 67778999999999999999999999999999999    5698 5566778777777766


Q ss_pred             Hhhhhhcc--c--HHHHHHHHHHHhhhhhcchhHHHHHHhhhc-CCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc---
Q 011529          185 LTPVAAKL--G--LPFLLVVRVFMGIGEGVAMPAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR---  256 (483)
Q Consensus       185 ~~~~~~~~--~--~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  256 (483)
                      ++...+..  +  ++.+++..++.+++.........++..|+. ++++|.+..++...+.++|..+.+.+...+.+.   
T Consensus        93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~  172 (473)
T PRK10429         93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG  172 (473)
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            65443311  1  334556667778888888888999999998 589999999998888888877766555443322   


Q ss_pred             ----cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHH
Q 011529          257 ----FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC  332 (483)
Q Consensus       257 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (483)
                          .+|+....+.+++.++..+..++..+|++.+.....+++          ++......++.+++||.++.+++..++
T Consensus       173 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~n~~~~~ll~~~~~  242 (473)
T PRK10429        173 GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEG----------SHLTLKDIVALIYKNDQLSCLLGMALA  242 (473)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccc----------cCCCHHHHHHHHhcCHHHHHHHHHHHH
Confidence                245656566666655555454444444321111000000          001112235567789999888888888


Q ss_pred             HHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          333 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      ..........+.++|.+...+ +....+.+.....++.+++.++.+++.||+|+|+.
T Consensus       243 ~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~  298 (473)
T PRK10429        243 YNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL  298 (473)
T ss_pred             HHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            887777777777766665433 55566677777778889999999999999998853

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.81  E-value=3.2e-17  Score=155.09  Aligned_cols=330  Identities=10%  Similarity=0.025  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhhh-hcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH--HHH
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS--IAT  183 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~--~~~  183 (483)
                      ......++..++..+...++.+.+.+ +.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+..  .+.
T Consensus        10 ~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p   89 (412)
T PF01306_consen   10 WWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP   89 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            33444555555667777888888665 589999999999999999999999999999999997765543332221  122


Q ss_pred             -HHhhhhhc--ccHH-HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          184 -ALTPVAAK--LGLP-FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       184 -~~~~~~~~--~~~~-~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                       +...+.+.  .|.+ ..+++.+..|++.....|+..+++.+..  ++.+.-.|-..+++++|.+++..++|.+.+ .+-
T Consensus        90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p  166 (412)
T PF01306_consen   90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INP  166 (412)
T ss_dssp             HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCc
Confidence             22122220  1332 3334445556666666777788777764  556777889999999999999999999987 466


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (483)
                      +..|++.....++..++.+..+++.+++.+..+....+        +++....+..+++|+|++|.+.+........+..
T Consensus       167 ~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~v  238 (412)
T PF01306_consen  167 NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDV  238 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            77888776666655555555444433222111111000        0011122355789999999998888888888888


Q ss_pred             HHHhhHHHHHHHhC---CCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011529          340 LLTWMPTYYNQVLH---FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  416 (483)
Q Consensus       340 ~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (483)
                      +....+.|+...+.   .+....|.+.++..+..++...+.+++.+|+|.|+         .+.++..+..+-+......
T Consensus       239 fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~---------~Lllag~i~~iRi~~~~~~  309 (412)
T PF01306_consen  239 FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN---------LLLLAGVIMAIRIIGSGFA  309 (412)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh---------HHHHHHHHHHHHHHHHhhh
Confidence            88888888886332   34466889999999999999999999999999884         3344445566666666667


Q ss_pred             chhHHHHHHHHHhhhhhhhhhchhhhhHhhhccC-cceeee
Q 011529          417 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSVSII  456 (483)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~  456 (483)
                      ++++.....-.+-............-+..+..++ ..++..
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y  350 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLY  350 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHH
Confidence            7777766666665555555555555566665543 334433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.81  E-value=1e-17  Score=169.79  Aligned_cols=247  Identities=17%  Similarity=0.123  Sum_probs=177.9

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhc
Q 011529          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (483)
Q Consensus       131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (483)
                      .+.+..+.....+..+++.+|..+|.+++|+++||+|||++++++.++..++.+..++++  |++.+++.|++.|++.+.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccc
Confidence            455677888999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             chhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccCCCCCC--
Q 011529          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED--  288 (483)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  288 (483)
                      .......++.|++++++|+.+..+ ......++.+++..++++..  +||+.+++..+..++..+. +++.++.++-.  
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999999 88888888888888888887  8999999999888877666 44444544311  


Q ss_pred             -CCCChhhHHHhh---------------------hcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          289 -PQLRPAEKKLIV---------------------SSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       289 -~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                       .+.++..+....                     ...+.....+...+.++++.|++....+...+..+.......-++.
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence             110000000000                     0000001112234667777776554444444444333333333333


Q ss_pred             HHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       347 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      .... +|.+.   .......+.....+....+...|+.|||
T Consensus       344 ~~~~-lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~  380 (521)
T KOG0255|consen  344 NVSG-LGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRR  380 (521)
T ss_pred             hhhh-cCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcH
Confidence            3332 44332   3444445557777777888999999877

>PRK11462 putative transporter; Provisional

Probab=99.81  E-value=9e-17  Score=159.38  Aligned_cols=261  Identities=10%  Similarity=-0.007  Sum_probs=183.4

Q ss_pred             HHHHHHhhhhhhhHHh-hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh----cCCchH-HHHHHHHHHHHHH
Q 011529          111 SAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAV-LGFGVVWWSIATA  184 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~  184 (483)
                      ++.+.........+.+ +..+.+..|+++..+|.+..+.-+..++..|+.|.++||    +||||. ++++.+..+++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            3333334444444444 344778899999999999999999999999999999996    687655 5667777777777


Q ss_pred             Hhhhhhccc----HHHHHHHHHHHhhhhhcchhHHHHHHhhhcC-CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc--
Q 011529          185 LTPVAAKLG----LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--  257 (483)
Q Consensus       185 ~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--  257 (483)
                      ++...+..+    ...+++..++..++.........++.+|+.+ ++||.+..++...+..+|..+++.+...+....  
T Consensus        96 llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~  175 (460)
T PRK11462         96 LAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG  175 (460)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            665544211    3456666777788888888888999999987 689999999999999999888887766555433  


Q ss_pred             -----CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHH
Q 011529          258 -----GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFC  332 (483)
Q Consensus       258 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (483)
                           +|+....+.+++.+++..+.+...+|+++++++.. .               .+..++..++||.++.+....++
T Consensus       176 ~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~-~---------------~~~~l~~~~~Nk~~~~l~~~~~~  239 (460)
T PRK11462        176 DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTT-S---------------MREDLRDIWQNDQWRIVGLLTIF  239 (460)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCC-C---------------HHHHHHHHhCChHHHHHHHHHHH
Confidence                 46666666666666655555444444322111100 0               01235678889998877777666


Q ss_pred             HHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          333 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      .............+|.+...|. +...+.+.....++.+++.++++++.||+++|+
T Consensus       240 ~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~  294 (460)
T PRK11462        240 NILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT  294 (460)
T ss_pred             HHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            6666666666666666665553 344556677778888999999999999999874

>TIGR01272 gluP glucose/galactose transporter

Probab=99.80  E-value=8.7e-18  Score=157.51  Aligned_cols=243  Identities=10%  Similarity=0.023  Sum_probs=169.4

Q ss_pred             cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc----------------
Q 011529          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------------  256 (483)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------------  256 (483)
                      +++.+++..++.|.|.+...+..+.++++..++|++++.+++.+.+.++|..++|.+++.+...                
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            7899999999999999999999999999999999999999999999999999999999988732                


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHH
Q 011529          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG  336 (483)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (483)
                      .+|+++|++.+.+.++..+.+.+...++.+++ + +++..+        ++   ....+..+++|.++...+..+++...
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~-~-~~~~~~--------~~---~~~~~~~~~~~~~~l~~~~~f~yvg~  155 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEA-D-VARVSS--------GD---TTQKTSAFQFTHLVLGALGIFVYVGA  155 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc-c-cccccc--------cc---ccchhhHHhhHHHHHHHHHHHHHHHH
Confidence            36899999777766655554443322111111 1 000000        00   01123467888888888888888889


Q ss_pred             HHHHHHhhHHHHHHH--hCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          337 TFILLTWMPTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS  414 (483)
Q Consensus       337 ~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (483)
                      +.++..|++.|+++.  +|+++.+.+...+.+..+.++|+++.+++.||+++++...       .  +..+.........
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~-------~--~~~l~~~~~~l~~  226 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA-------F--NAFLAVLLSIGAA  226 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-------H--HHHHHHHHHHHHH
Confidence            999999999999864  5899999999999999999999999999999999774221       1  1111111111111


Q ss_pred             ccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeee
Q 011529          415 HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISI  458 (483)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  458 (483)
                      ..+......... +.+.+.+...|...+...+..+++.+++.++
T Consensus       227 ~~~~~~~~~~~~-l~g~~~s~i~P~~~s~a~~~~~~~~~~asai  269 (310)
T TIGR01272       227 LTHGYVAMWFVL-ALGLFNSIMFPTIFSLALNALGRHTSQGSGI  269 (310)
T ss_pred             HcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence            112222222222 3334455566666766666666665555554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.80  E-value=4.6e-17  Score=155.42  Aligned_cols=323  Identities=15%  Similarity=0.098  Sum_probs=233.4

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh----cCCch-HHHHHHHHHHH
Q 011529          108 LCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKA-VLGFGVVWWSI  181 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~  181 (483)
                      .-.++.+...........++.. +.+.+|+++..+|.+..+.-+..++..|+.|.+.||    +||+| .++++.+..++
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            3344445555555555555555 778899999999999999999999999999999996    67654 57778788888


Q ss_pred             HHHHhhhhhc----ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcC-CcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-
Q 011529          182 ATALTPVAAK----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIH-  255 (483)
Q Consensus       182 ~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-  255 (483)
                      .+.++..+++    .+....++..++.+++.........++.+++.+ ++||.+..++...+..+|..+...+.+.+.. 
T Consensus        96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~  175 (467)
T COG2211          96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL  175 (467)
T ss_pred             HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877763    245667788899999999999999999999986 5899999999999999998877766665553 


Q ss_pred             ------ccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHH
Q 011529          256 ------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVS  329 (483)
Q Consensus       256 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (483)
                            ..||+....+.+++.++..+.+++..+|+..+..+.++..+.           +.+..+..+++||.+...++.
T Consensus       176 ~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~-----------~~~~~~~~~~~Nrp~~~~l~~  244 (467)
T COG2211         176 FGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKL-----------KLKDSFLLIFKNRPLLLLLLM  244 (467)
T ss_pred             hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccc-----------cHHHHHHHHHccchHHHHHHH
Confidence                  346888888888888888888877777665433322210110           001234467899999999998


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 011529          330 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF  409 (483)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (483)
                      .++...+.+...+...+|.+...|.+.............+.+++.++..++.+|+|+|+..       .....+...+..
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-------~~~~~~~~i~~~  317 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-------LIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-------HHHHHHHHHHHH
Confidence            8888888888888999999988888888888888888888888899999999999999532       222222222222


Q ss_pred             HHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhc
Q 011529          410 LTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA  448 (483)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (483)
                      ...+...++....++..++.....+...+..++.+.|..
T Consensus       318 ~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~v  356 (467)
T COG2211         318 LLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTV  356 (467)
T ss_pred             HHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchh
Confidence            333333444444454445555555555555666665543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.5e-19  Score=156.56  Aligned_cols=278  Identities=17%  Similarity=0.157  Sum_probs=198.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh-cCCchHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWW  179 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  179 (483)
                      +|...+...++..|-.++.....+.....+..+.+++.++..++.++|.....+.++++|++.|| +|-|.--++-+.+.
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            44455555555556666666666666777888889999999999999999999999999999997 67776666666666


Q ss_pred             HHHHHHhh---hhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          180 SIATALTP---VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       180 ~~~~~~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      .++-++++   ..+  .+|.++.+|++.|+|.-....+.++++..|++.|+.+.++|+......+|..+--.+.+++.+.
T Consensus       121 ~~GqliFa~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  121 FLGQLIFAAGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHHhchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            66666554   345  7899999999999998888888899999999999999999999999999999888888888775


Q ss_pred             cCc------hHHHH---HHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHH
Q 011529          257 FGW------PSVFY---SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALI  327 (483)
Q Consensus       257 ~g~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (483)
                      .+-      +....   ..+...+..........--.      .+..+.....++....+..+..+.+.  -.|.+|.+.
T Consensus       199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~------D~rAerilh~e~g~~Ge~pkLtdv~~--f~ppfw~~~  270 (459)
T KOG4686|consen  199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS------DDRAERILHLEEGFLGEEPKLTDVNT--FYPPFWVLV  270 (459)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHhhhcCcccCCcccccccc--cCccHHHHH
Confidence            431      11111   11111111111111110000      00000000000000001101111111  257899999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          328 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      ++.+++..+...+.+.-|.++++++|+++..++-+.+......++...+.|.++||.|++-
T Consensus       271 iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~  331 (459)
T KOG4686|consen  271 IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL  331 (459)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence            9999999999999999999999999999999999999998889999999999999999883

>PRK09848 glucuronide transporter; Provisional

Probab=99.79  E-value=7.8e-17  Score=160.18  Aligned_cols=262  Identities=14%  Similarity=0.049  Sum_probs=164.4

Q ss_pred             HHHHHHhhhhhhhHHh-hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc----CCchHH-HHHHHHHHHHHH
Q 011529          111 SAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV----GGKAVL-GFGVVWWSIATA  184 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~~~~  184 (483)
                      ++.+..........++ .+++.+.+|+++.++|.+.++..+..++..++.|+++||.    |||+.. .++.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            3444444444444444 3457777899999999999999999999999999999996    666644 555554444443


Q ss_pred             Hhh-hh----hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC-cchhHHHHHHHHHHH-----hHHHHHHhhHHHh
Q 011529          185 LTP-VA----AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMY-----LGSVTGLAFSPFL  253 (483)
Q Consensus       185 ~~~-~~----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~-----~g~~~g~~~~~~l  253 (483)
                      +.. ..    +....+..++..++.+++.+...+...++..++..+ ++|.+..++...+.+     ++..++|.+.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848         95 LVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            322 11    101223345556677888888887778877776654 678887777655433     4455556555433


Q ss_pred             hhcc--CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHH
Q 011529          254 IHRF--GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (483)
Q Consensus       254 ~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (483)
                      ....  +|.....+.+++.++..++.....+|+.+++.+.                +.....++.++|||.++...+..+
T Consensus       175 g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----------------~~~~~~~~~l~~n~~f~~~~~~~~  238 (448)
T PRK09848        175 PEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----------------PSLKISLQTLKRNRPLFMLCIGAL  238 (448)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----------------CCHHHHHHHHhCCchHHHHHHHHH
Confidence            2111  1211112222232222222222223321111100                001223667899999999988888


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          332 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      +............|.|+++.+|.++...++......++.+++.++.+++.||+++|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~  295 (448)
T PRK09848        239 CVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN  295 (448)
T ss_pred             HHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            888888888888888888888877665555555446677889999999999999874

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.2e-19  Score=167.95  Aligned_cols=353  Identities=15%  Similarity=0.147  Sum_probs=225.3

Q ss_pred             cCChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhc-C-------CChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCc
Q 011529           98 EFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEF-N-------WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK  169 (483)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r  169 (483)
                      ..+++.+.+.+..++.+...++...++...+.+...+ |       +++...+.+..+..++.+++++++|++.||+|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            3456777888888999999999999998888766543 2       4556778899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcc-----cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHH
Q 011529          170 AVLGFGVVWWSIATALTPVAAKL-----GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSV  244 (483)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  244 (483)
                      +++...++++.++++++++....     -.+++...|++.|+|.|+-+|...+..+|...+++||...+..-++..+|..
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            99999999999999877665321     2467889999999999999999999999999999999999998888888888


Q ss_pred             HHHhhHHHhhhc-------------c--CchHHHHHHHHHHHHHHHHHHHhccCCCCCC----CCCCh---hhHHH----
Q 011529          245 TGLAFSPFLIHR-------------F--GWPSVFYSFGSLGTVWFTVWLSKAHSSPAED----PQLRP---AEKKL----  298 (483)
Q Consensus       245 ~g~~~~~~l~~~-------------~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~----  298 (483)
                      .|.+++-.+...             .  =||..+.+.++..++... +.+..|++++-.    ++.+.   +.++.    
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~  273 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYTALVSKKLKQAAGDMKKVLSVD  273 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHHHHhhcCHhhhhhccccccccc
Confidence            877666544321             1  188777766655554433 333334433211    00000   00000    


Q ss_pred             h--hhcccCCCCCcccc---hhhhh---cChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhH--------H
Q 011529          299 I--VSSCASKEPVKTIP---WGLIL---SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL--------F  362 (483)
Q Consensus       299 ~--~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~  362 (483)
                      .  .+......+.+...   +...+   +-+.+......+|+...+.+....+....+.. .|+.+.....        .
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~  352 (538)
T KOG0252|consen  274 IEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEG  352 (538)
T ss_pred             cchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHH
Confidence            0  00000011111111   11122   12445667778888888889988888888886 6766554433        1


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccch----hHHHHHHHHH-hhhhhhhh
Q 011529          363 CVLPW-LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDS----PAMAVLCMAC-SQGTDAFS  436 (483)
Q Consensus       363 ~~~~~-~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~  436 (483)
                      ..+.. .+.+.|..+...++|++||+         .+...++.+..+..+......+    ....+++..+ ..+.....
T Consensus       353 ~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP  423 (538)
T KOG0252|consen  353 NLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP  423 (538)
T ss_pred             HHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC
Confidence            11222 22333555666789999988         3444455554444444433322    1112222222 22223333


Q ss_pred             hchhhhhHhhhcc-Ccceeeeeeeec
Q 011529          437 QSGLYSNHQDIAP-RYSVSIISINIL  461 (483)
Q Consensus       437 ~~~~~~~~~~~~~-~~~g~~~g~~~~  461 (483)
                      .........+..| |.|++.-|+..+
T Consensus       424 n~ttfivpaE~FParvR~t~hGIsAA  449 (538)
T KOG0252|consen  424 NATTFIVPAEIFPARVRSTCHGISAA  449 (538)
T ss_pred             CceeEEeehhhchHHHhhhhhhHHHH
Confidence            3445556667666 568888876544

>TIGR00788 fbt folate/biopterin transporter

Probab=99.76  E-value=3.1e-17  Score=162.75  Aligned_cols=276  Identities=11%  Similarity=0.030  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHh-hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcC-----CchHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIA-ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLGFGVVW  178 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~  178 (483)
                      .+.++...++..++. ...... .+.+.+++|++.++++...++..+...+ .+++|+++||++     ||+.++++.++
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHH
Confidence            445556667777777 444444 5557778999999999999999999988 555999999997     67777777766


Q ss_pred             H-HHHHHHhhhhhcccH-HHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHH---HHHHHHHHhHHHHHHhhHHHh
Q 011529          179 W-SIATALTPVAAKLGL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSL---ALVYSGMYLGSVTGLAFSPFL  253 (483)
Q Consensus       179 ~-~~~~~~~~~~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~g~~~g~~~~~~l  253 (483)
                      . .+....++..+  +. ....+..++.+++.+...++..++..|..+ +++....   ++......+|.++|+.++|.+
T Consensus       105 ~~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       105 GSAILYGLLPGKV--SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            6 34434344334  43 344457889999999999999999999997 5554433   334444568999999999999


Q ss_pred             hhccCchHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCChhhH---HHhhhcccCCCCCcccchhhhhcChhHHHHHHH
Q 011529          254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA-EDPQLRPAEK---KLIVSSCASKEPVKTIPWGLILSKPPVWALIVS  329 (483)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (483)
                      .+.++|+..|++.+++.++..+...+ .+|++. ..++..+.+.   ..................+..+++|.++...+.
T Consensus       182 ~~~~~~~~~f~~~a~l~ll~~~~~~~-~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~f  260 (468)
T TIGR00788       182 LDKTLTRILFLITAALLLLQLFVSNL-SKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIF  260 (468)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHh-cccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence            99999999999988888777444444 344321 1111000000   000000000000001124456788888876665


Q ss_pred             HHH-HHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          330 HFC-HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       330 ~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      .++ +.........+. .+..+..|+++.+.|.+....+++.+++..+.+++.+|++.|
T Consensus       261 ifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r  318 (468)
T TIGR00788       261 IFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR  318 (468)
T ss_pred             HHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence            555 322222211111 133345899999999999999999999999999998888866

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.76  E-value=7.5e-15  Score=144.39  Aligned_cols=306  Identities=16%  Similarity=0.070  Sum_probs=214.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHH-HHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHH
Q 011529          139 ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF-GVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN  217 (483)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  217 (483)
                      +..++..++..+...+..|+.|.++|+-++||.++. ..++..+++..+.+.+..+++...+..++.-++.+......++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345788899999999999999999999987776554 4444555666666654335666666667777788888899999


Q ss_pred             HHhhhcCCcch--------------------------hHHHHHHHHHHHhHHHHHHhhHHHhhhc--------cCchHHH
Q 011529          218 ILSKWVPVAER--------------------------SRSLALVYSGMYLGSVTGLAFSPFLIHR--------FGWPSVF  263 (483)
Q Consensus       218 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~g~~~~~  263 (483)
                      ++++..+++++                          ++..+.-...+.+|.++.-.+.-.+...        .+.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          8999999999999998887766554322        2347888


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCC-CCCChhh-HHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH
Q 011529          264 YSFGSLGTVWFTVWLSKAHSSPAED-PQLRPAE-KKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL  341 (483)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (483)
                      .+.++..++..+..++..|+++.++ .+..... ....++        -...+|++.|+|.+..+++..+++.-+.+++.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~--------l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~  301 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKR--------LWRTFKEIRKLRQLFLFLIAYFLYSDGVNTII  301 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHH--------HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877777777777766522 1111111 100000        02245677788999999999999999999999


Q ss_pred             HhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHHHH----hhc
Q 011529          342 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK--GLSVTTVRKIMQSIGFLGPAFFLTQ----LSH  415 (483)
Q Consensus       342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  415 (483)
                      .....|.++++|++..+...+..+..+.+++|.++.|++.||+|.|  +......     ....++....+..    ...
T Consensus       302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l-----~~~~~i~~~g~~G~~~~~~g  376 (477)
T PF11700_consen  302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL-----ILWIIIPLYGLFGFWPSFFG  376 (477)
T ss_pred             HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH-----HHHHHHHHHHHHHhhhcccC
Confidence            9999999999999999999999999999999999999999999988  3221111     1111111111110    011


Q ss_pred             cchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccC-cceeeee
Q 011529          416 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSVSIIS  457 (483)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g  457 (483)
                      ....+-+.++..+.+...+..++..-+...+..|+ +.+..+|
T Consensus       377 ~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFg  419 (477)
T PF11700_consen  377 LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFG  419 (477)
T ss_pred             cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHH
Confidence            23334444444445555556677777777777664 4666666

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=1.7e-16  Score=157.93  Aligned_cols=284  Identities=17%  Similarity=0.216  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHH
Q 011529          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT  183 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  183 (483)
                      ..+.++.+..+.+.+....+...+..+.+.|+++..+.|++.+.+-++..+...+..+..-|..|-+++-++.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34555666777777777777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhc-----------------------------------------------cc--HH-HHHHHHHHHhhhhhcchh
Q 011529          184 ALTPVAAK-----------------------------------------------LG--LP-FLLVVRVFMGIGEGVAMP  213 (483)
Q Consensus       184 ~~~~~~~~-----------------------------------------------~~--~~-~l~~~~~l~G~~~~~~~~  213 (483)
                      +++++.+-                                               .+  +| .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            88765310                                               00  23 567779999999999999


Q ss_pred             HHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc------------------C-chHHHHHHHHHHHHHH
Q 011529          214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF------------------G-WPSVFYSFGSLGTVWF  274 (483)
Q Consensus       214 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------------------g-~~~~~~~~~~~~~~~~  274 (483)
                      ...+|+-|...+++-...+|+...+..+|.++|-++++++...+                  | |-.-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886521                  1 4455677777778877


Q ss_pred             HHHHHhccCCCCCCCCCChhhHHHhhhccc--CCCCC-------cccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhH
Q 011529          275 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCA--SKEPV-------KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP  345 (483)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (483)
                      +.+++++++.|+..++.+..+.+....+..  ...+.       -....+.+++||.+....+...+....+.++.+++|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            788777777665543221111111111111  01111       112356788999999999999999999999999999


Q ss_pred             HHHHHHhCCCcchhhHHhHHHHH-HHHHHHHHHHHHHHHHhhc
Q 011529          346 TYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       346 ~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~g~~  387 (483)
                      -|+++++|.++..+..+....++ +..+|.+++|++.+|+..+
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            99999999999999999877766 6678889999999998755

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.74  E-value=1.2e-21  Score=195.18  Aligned_cols=279  Identities=18%  Similarity=0.184  Sum_probs=186.0

Q ss_pred             HHHHHHhhhhhhhHHhhhhhh--hhcCC---------ChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          111 SAFLLCNMDRVNMSIAILPMS--AEFNW---------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~--~~~g~---------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      ++.+..+++...++...+...  ..++.         +..+.+++.+...++..++.+++|.++||+|||+.+.++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344666777666655544433  22222         2245789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcc-cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc-
Q 011529          180 SIATALTPVAAKL-GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-  257 (483)
Q Consensus       180 ~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  257 (483)
                      .++.++..+++.. +++.+.++|++.|++.|...+....++.|..|+++|++..++.+....+|..++..++..+.... 
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  166 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD  166 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999888633 68899999999999999999999999999999999999999999999999999988775554333 


Q ss_pred             --CchHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCCChhhH------------HHhhhcccCCCC--Ccccchhhhh
Q 011529          258 --GWPSVFYSFGSLGTVWFTVWLSKAHSSPAE---DPQLRPAEK------------KLIVSSCASKEP--VKTIPWGLIL  318 (483)
Q Consensus       258 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~  318 (483)
                        +||..+.+..+..++..+.. ...||.|+-   +.+.++.++            ++..+..++.++  +.+..+++++
T Consensus       167 ~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  167 NWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             cccccccccccccccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence              49999988887776655444 445555431   000000000            000000000000  0113466666


Q ss_pred             cChh----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 011529          319 SKPP----VWALIVSHFCH-NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT  393 (483)
Q Consensus       319 ~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~  393 (483)
                      +++.    +........+. ..+.+....+.+.++++ .+.+..  -.......+...++.+++..+.||+|||+....+
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~  322 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG  322 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccc--cccccccccccccccccccccccccccccccccc
Confidence            6643    22222222222 22333444555666655 676665  2223344456667777788999999999765544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.71  E-value=9.7e-15  Score=135.73  Aligned_cols=310  Identities=14%  Similarity=0.126  Sum_probs=204.4

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcC-----CchHHH-HHHHHHHHHHHHhhhhh----c-------c
Q 011529          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG-----GKAVLG-FGVVWWSIATALTPVAA----K-------L  192 (483)
Q Consensus       130 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~-~~~~~~~~~~~~~~~~~----~-------~  192 (483)
                      +..|++++....+.+.++..+... ..+.+|+.+|+.+     ||..++ .+.+..+.+..+..++.    .       .
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            567899999999999999988775 6999999999988     666644 45555555544443321    1       0


Q ss_pred             c-HH--HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH---
Q 011529          193 G-LP--FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF---  266 (483)
Q Consensus       193 ~-~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~---  266 (483)
                      . .+  ...+...+.|+|.+...+...+++.|..|+|+|+++.++...+.-+|.+++..+.+.+.+.++..-...+.   
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            1 22  34455678899999999999999999999999999999999999999999999999999877643333332   


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                      +++.++..++..+- .|++.++....++          ++++.-...++++..+|+...+....++...+++.-...+-+
T Consensus       165 a~i~~~l~~ia~wg-~E~r~~~~~~~~~----------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP  233 (403)
T PF03209_consen  165 ALIALLLNLIALWG-QEPRRSRRAAAAE----------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEP  233 (403)
T ss_pred             HHHHHHHHHHHHHh-cccCCcccccCCC----------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence            22222222222222 2221111110000          111111334777888999999999999999999999999999


Q ss_pred             HHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHH
Q 011529          347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM-AVL  424 (483)
Q Consensus       347 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  424 (483)
                      |--+.+|++..+...+....+.+..+|..+.|++..| .++++.     ..+-+..+... ...+.......+.+. ...
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~-----a~~G~~~~~~~-f~lii~a~~~~~~~~~~~~  307 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT-----AALGCLLGALA-FALIILAGPLGSPWLFRPG  307 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH-----HHHHHHHHHHH-HHHHHHHHhcccchHHHHH
Confidence            9999999999999999999999999999999988774 333321     11111111111 112222223333333 344


Q ss_pred             HHHHhhhhhhhhhchhhhhHhhhccCcceeeee
Q 011529          425 CMACSQGTDAFSQSGLYSNHQDIAPRYSVSIIS  457 (483)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  457 (483)
                      .+.++.+.+.+....+...+.-..+++.|..+|
T Consensus       308 ~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG  340 (403)
T PF03209_consen  308 VFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMG  340 (403)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHH
Confidence            445555555555554444444455667776665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.69  E-value=2e-14  Score=131.59  Aligned_cols=249  Identities=14%  Similarity=0.141  Sum_probs=177.6

Q ss_pred             hhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHH
Q 011529          118 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (483)
Q Consensus       118 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (483)
                      .....-+|.+-.+.+++|++..|++.+.........+..++.|.++||+|||+..++..++..++++.. ..+  +++.+
T Consensus        48 ~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~--~~~~L  124 (354)
T PF05631_consen   48 AADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSS--NYPVL  124 (354)
T ss_pred             HHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hcc--ccHHH
Confidence            344445666556667899999999999999999999999999999999999999999999999888754 345  89999


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHhh-h----cCCcchhHHHHHHH-HHHHhHHHHHHhhHHHhhhccCc--hHHHHHHHHH
Q 011529          198 LVVRVFMGIGEGVAMPAMNNILSK-W----VPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSL  269 (483)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~-~----~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~--~~~~~~~~~~  269 (483)
                      +++|++.|++.+..+.+..++... .    +|++..+..++... ..+++-.+++.+++.++.+..+.  ..+|.....+
T Consensus       125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~  204 (354)
T PF05631_consen  125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVL  204 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999998887543 2    22333344444444 23344455556666666666554  7788887777


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 011529          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (483)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (483)
                      .++..+++....+|...+..+..+..+..            ...++.+.+||+++.+.+...++-...+.+...-.+.++
T Consensus       205 l~~~~~~I~~~W~ENyg~~~~~~~~~~~~------------~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~  272 (354)
T PF05631_consen  205 LAVAAVLILKTWPENYGDTSSSSSLSGSF------------REAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD  272 (354)
T ss_pred             HHHHHHHHHhcccccCCCcccccchHHHH------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec
Confidence            77777766655555443322211111110            123567888999999999999999888887644444444


Q ss_pred             HHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 011529          350 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT  383 (483)
Q Consensus       350 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr  383 (483)
                      .  +-.....|++++.+.++.++|+.+..++..+
T Consensus       273 ~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  273 P--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             C--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2  2234567999999999999999888766554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.68  E-value=3.8e-14  Score=134.37  Aligned_cols=351  Identities=16%  Similarity=0.124  Sum_probs=218.5

Q ss_pred             HHHHHHHHHHHhhhhhhhHHh-hhhhhhhcC----CChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-CCchHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIA-ILPMSAEFN----WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWW  179 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~  179 (483)
                      +..++..-+-..+..+.+... .-++..+++    +++++..-+.+.|....-+..+++|+++||+ |+|+++..+.+++
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            334444455444444433332 333555555    9999999899998888888999999999995 9999999999999


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCc--chhHHHHHHHHHHHhHHHHHHhhHHHhhhcc
Q 011529          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF  257 (483)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  257 (483)
                      .++.++++.....+...++++..+.++|.|..-+...+++.|.+|++  +|-..++++.++.++|+.++|++.+++.+..
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            99999988773115778889999999999999999999999999864  4778899999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhccCCCCCC---C--CCChhhHHHh---------hh-------ccc------------
Q 011529          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPAED---P--QLRPAEKKLI---------VS-------SCA------------  304 (483)
Q Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~---------~~-------~~~------------  304 (483)
                      ||+..|.+.++-..+.++..+..++......   +  ..+.......         ..       ...            
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~  262 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILI  262 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888777766665543321111   0  0000000000         00       000            


Q ss_pred             ------CCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC----cchhhHHhHHHHHHHHHHH
Q 011529          305 ------SKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFN----LTESGLFCVLPWLTMAFSA  374 (483)
Q Consensus       305 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~i~~  374 (483)
                            +....++.. .+.-|-.....+.+...++...+....+.+..|..+..+.+    ....++..+...+..++..
T Consensus       263 ~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~  341 (498)
T COG3104         263 AIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFS  341 (498)
T ss_pred             HHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHH
Confidence                  000000000 01000111223333333333333333444555555432222    2345677888888888888


Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh--------ccchhHHHHHHHHHhhhhhhhhhchhhhhHhh
Q 011529          375 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS--------HVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD  446 (483)
Q Consensus       375 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (483)
                      ++..++..|.++++.-.....+..+...+....+..+...        ...+.++.+....+......+..|.-.+....
T Consensus       342 pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~  421 (498)
T COG3104         342 PILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTK  421 (498)
T ss_pred             HHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            8888888886555322222222333333333333222222        11245556666666666667777777888887


Q ss_pred             hccCc-ceeeee
Q 011529          447 IAPRY-SVSIIS  457 (483)
Q Consensus       447 ~~~~~-~g~~~g  457 (483)
                      ..|+. .+..++
T Consensus       422 laP~~~~s~~ma  433 (498)
T COG3104         422 LAPPALKSFIMA  433 (498)
T ss_pred             hChHHHHHHHHH
Confidence            77654 455554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.66  E-value=8.7e-14  Score=129.01  Aligned_cols=305  Identities=15%  Similarity=0.040  Sum_probs=212.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchH-HHHHHHHHHHHHHHhhhhhc-ccHHHHHHHHHHHhhhhhcchhHH
Q 011529          138 PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-LGFGVVWWSIATALTPVAAK-LGLPFLLVVRVFMGIGEGVAMPAM  215 (483)
Q Consensus       138 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~  215 (483)
                      .+..+...++..+...+..|+.|.++|+.|+||. +-....+..++.+++.+.++ ..++..++...+..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3557888999999999999999999999987665 45555666666777777774 245566677888889988889999


Q ss_pred             HHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhH--HHhh----------------hccCchHHHHHHHHHHHHHHHHH
Q 011529          216 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLI----------------HRFGWPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       216 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~----------------~~~g~~~~~~~~~~~~~~~~~~~  277 (483)
                      ++++.+..++++-++..++-.....+|+.+.-++.  ..+.                +...-|..+.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999888888888888888877665443  1111                22346778888888888877777


Q ss_pred             HHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcc
Q 011529          278 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT  357 (483)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  357 (483)
                      ++..++.++...+..+.-....+        +-...++++.+++.+...++..+++.-+.+++......|....+|++..
T Consensus       217 ~~~v~~~~~~~~~~~~~l~~g~k--------~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~  288 (438)
T COG2270         217 ILNVHDAEKISSPPPTALRNGFK--------ELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST  288 (438)
T ss_pred             HhcccccccccccchHHHHHHHH--------HHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence            77777665432111111111000        0023467788889999999999999999999999999999988999999


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhh
Q 011529          358 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQ  437 (483)
Q Consensus       358 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (483)
                      +..++.....+.+++|.++.|++.||+|.|+....+.       .+...+...... ... ....+++..+.+...+..+
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l-------vi~~~~~~~~~~-~~~-~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGL-------VILSIAALYLIF-LEG-ELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH-------HHHHHHHHHHHH-ccc-cHHHHHHHHHHHHhcchHH
Confidence            9999999999999999999999999999985433222       111111112121 112 2223333233333334445


Q ss_pred             chhhhhHhhhc-cCcceeeeeee
Q 011529          438 SGLYSNHQDIA-PRYSVSIISIN  459 (483)
Q Consensus       438 ~~~~~~~~~~~-~~~~g~~~g~~  459 (483)
                      ...-++..+.. +++.++.+|+.
T Consensus       360 A~SRSy~~~lvp~~k~~~fFgly  382 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLY  382 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehh
Confidence            55666666655 56688888843

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.65  E-value=1.4e-17  Score=165.91  Aligned_cols=280  Identities=15%  Similarity=0.201  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh
Q 011529          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP  187 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  187 (483)
                      .+++..+++....+.+...+..+.++|+++..+.|++.+.+-++..+..++..++.+|..|-|++-++.++++++.++++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            34445555566667777788899999999999999999999999999999999999999888899999999999988865


Q ss_pred             hhhc----c--------------------------------------------cHHHHHHHHHHHhhhhhcchhHHHHHH
Q 011529          188 VAAK----L--------------------------------------------GLPFLLVVRVFMGIGEGVAMPAMNNIL  219 (483)
Q Consensus       188 ~~~~----~--------------------------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~  219 (483)
                      +.+-    +                                            -++.++++.++.|+|....++...+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            4210    0                                            035678889999999999999999999


Q ss_pred             hhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc---------------------C-chHHHHHHHHHHHHHHHHH
Q 011529          220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---------------------G-WPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---------------------g-~~~~~~~~~~~~~~~~~~~  277 (483)
                      -|..++++-+..+|+..++..+|.++|-++++.+.+.+                     | |-.-|++.+++.++..+..
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998776421                     1 3334555666666666666


Q ss_pred             HHhccCCCCCCCCCCh------hhHHHhhhcccC---------CCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 011529          278 LSKAHSSPAEDPQLRP------AEKKLIVSSCAS---------KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLT  342 (483)
Q Consensus       278 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (483)
                      +.++++-|+..+..++      ++++...+..++         ..+.-....+.+++||.+....+...+......++.+
T Consensus       247 ~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~t  326 (539)
T PF03137_consen  247 FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFAT  326 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655544111000      000000000000         0111233466789999999999999999999999999


Q ss_pred             hhHHHHHHHhCCCcchhhHHhHHHHH-HHHHHHHHHHHHHHHHhhc
Q 011529          343 WMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       343 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~g~~  387 (483)
                      +.|.|++.+++.++.++.++.....+ ++++|.+++|++.+|++-+
T Consensus       327 F~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  327 FLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            99999999999999999998877765 7788999999999998654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.64  E-value=5.8e-15  Score=144.91  Aligned_cols=163  Identities=17%  Similarity=0.220  Sum_probs=134.2

Q ss_pred             hHHhhhhhhhhcCCC--------hhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc--c
Q 011529          123 MSIAILPMSAEFNWN--------PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK--L  192 (483)
Q Consensus       123 ~~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~  192 (483)
                      .....+.+.++.|.+        ..+.+...++..+...++.++.|++.||+|+|+++.++.++.+++..+......  .
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~  306 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF  306 (418)
T ss_pred             HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            334455555666644        366799999999999999999999999999999999999998888766655321  1


Q ss_pred             cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHH-HHHHhHHHHHHhhHHHhhhc------cCchHHHHH
Q 011529          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHR------FGWPSVFYS  265 (483)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------~g~~~~~~~  265 (483)
                      +++.+++.+++.|++.+...+....++.|++|+++|++++|+.+ ....+|..+||.++|.+.++      +||+.+|.+
T Consensus       307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~  386 (418)
T TIGR00889       307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF  386 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence            24567778999999999888898999999999999999999997 67889999999999999987      469999999


Q ss_pred             HHHHHHHHHHHHHHhccCCC
Q 011529          266 FGSLGTVWFTVWLSKAHSSP  285 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~  285 (483)
                      .+++.++..++.+++.+++.
T Consensus       387 ~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       387 FAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHHHHhCCcc
Confidence            88888888777777776553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.61  E-value=3.3e-13  Score=129.49  Aligned_cols=259  Identities=17%  Similarity=0.199  Sum_probs=180.0

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhh--cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCC-chHHHHHH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGV  176 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~  176 (483)
                      +.+|+.+.+..+..++.....+.+.+..-.+.++  .+.+.+..|++.++..++.+++++.+|++..|.+. |+.++.+.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            4467778888888888888877777665555555  78888999999999999999999999999999986 88899999


Q ss_pred             HHHHHHHHHh-hhh--hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHh
Q 011529          177 VWWSIATALT-PVA--AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (483)
Q Consensus       177 ~~~~~~~~~~-~~~--~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (483)
                      ++..++.++. .+.  ++...+.++++|++.|+|.+. ....-+|+++....++|.++++....+..+|.++||.+...+
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            9999998877 332  222468899999999999764 567789999988889999999999999999999999887666


Q ss_pred             hhc--cC-----------chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcC
Q 011529          254 IHR--FG-----------WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK  320 (483)
Q Consensus       254 ~~~--~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (483)
                      ..-  -|           +..+-|+.+++.++..+......+|......+.+.++.++ .+..+++.+..+.++      
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~------  261 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE-EKSDIEKVKKPKLDW------  261 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh-hccchhhhccCChhH------
Confidence            431  11           3456677777777777777766666544432221111100 000001111111111      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHH
Q 011529          321 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP  366 (483)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  366 (483)
                      +..+.+.+..+...+......+..+......++++..++....+..
T Consensus       262 ~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~  307 (488)
T KOG2325|consen  262 VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGIT  307 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhH
Confidence            1233445555555666666677777777777888877765544443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=2.3e-14  Score=139.12  Aligned_cols=151  Identities=11%  Similarity=0.075  Sum_probs=128.0

Q ss_pred             hHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      .....+.+.+++|.+..+.+.+.+...++..++.++.|++.||+|||+.+.++.++..++.++..+.+..+...+++..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            33445556678899999999999999999999999999999999999999999888888887776665222233455677


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~  273 (483)
                      +.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||++.|.+.+++.++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            88888888888888899999999999999999999999999999999999999999999999888776654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.59  E-value=1.3e-13  Score=135.14  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=132.6

Q ss_pred             hHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      ...+++.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.+  +.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  310 (399)
T PRK05122        235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence            34445555555565  3456677788889999999999999999999999988888888887777777  7778888899


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhcc
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  282 (483)
                      +.|++.+..++.....+.+.+|+++|+++.|+++....+|..+++.+.|.+.+..||+..+++.+++.++..+..+...+
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998888888888899999999999999999999999999999999999999999999988888877666665555


Q ss_pred             CCC
Q 011529          283 SSP  285 (483)
Q Consensus       283 ~~~  285 (483)
                      +++
T Consensus       391 ~~~  393 (399)
T PRK05122        391 RAP  393 (399)
T ss_pred             ccc
Confidence            443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.59  E-value=1.3e-14  Score=119.58  Aligned_cols=136  Identities=24%  Similarity=0.419  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcC
Q 011529          145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP  224 (483)
Q Consensus       145 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (483)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....+  +++.+.+.+++.|++.+...+...+++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            3456778889999999999999999999999988888888887777  88999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhcc
Q 011529          225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (483)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  282 (483)
                      +++|++.+++.+....+|..++|.+.+.+.+..+|++.+++.+++.++..+......+
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999899999999888877776666655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.59  E-value=2.7e-13  Score=136.17  Aligned_cols=169  Identities=12%  Similarity=0.103  Sum_probs=123.4

Q ss_pred             hhhhhhhHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH-hhhhhcccH
Q 011529          117 NMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL-TPVAAKLGL  194 (483)
Q Consensus       117 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~  194 (483)
                      ....+....++|.+. +++|.+..+.++......++..++.++.|+++||+|||+++..+.++..++.+. +......+.
T Consensus       263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (490)
T PRK10642        263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVI  342 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            344444555677744 668999888888888889999999999999999999999988877654433322 222221156


Q ss_pred             HHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc-CchHHHHHHHHHHHHH
Q 011529          195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVW  273 (483)
Q Consensus       195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~  273 (483)
                      ..+++++++.|++.+........++.+.+|++.|++++|+.+....+++.++|.+.+++.+.. +|+..+++..+.+++.
T Consensus       343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~  422 (490)
T PRK10642        343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG  422 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            777888888888877777778888999999999999999866656677788999999888764 4776766666666555


Q ss_pred             HHHHHHhccCCCC
Q 011529          274 FTVWLSKAHSSPA  286 (483)
Q Consensus       274 ~~~~~~~~~~~~~  286 (483)
                      .+..++. ||+++
T Consensus       423 ~~~~~~~-pes~~  434 (490)
T PRK10642        423 LITGVTM-KETAN  434 (490)
T ss_pred             HHHHHHh-ccccC
Confidence            5554443 55544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=1.5e-13  Score=134.19  Aligned_cols=156  Identities=13%  Similarity=0.082  Sum_probs=126.3

Q ss_pred             hhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q 011529          122 NMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (483)
Q Consensus       122 ~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (483)
                      .+....|. +.+++|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.+...+........+  +.+.+++.
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~  311 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--SPAILLGL  311 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence            34445665 5577899999999998888888888999999999999999988777666555554444455  67777788


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      +++.+++.+...+....+..|.+| ++|++++++++....+|..++|.++|.+.+.+||+..|++.+++.++..+..+..
T Consensus       312 ~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        312 QLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            888888877777777788889886 5699999999999999999999999999999999999998877777766555543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.59  E-value=2.3e-14  Score=141.26  Aligned_cols=149  Identities=10%  Similarity=0.074  Sum_probs=129.5

Q ss_pred             hcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcch
Q 011529          133 EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM  212 (483)
Q Consensus       133 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  212 (483)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++..+.+  +.+.+++.+++.|++.+...
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence            3467778899999999999999999999999999999999999998888888888887  88888889999999988888


Q ss_pred             hHHHHHHhhhcCCcchhHHHHH-HHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccC
Q 011529          213 PAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       213 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      +....++.+.+|++.++...+. ++....+|.+++|.+.|++.+..||+..|.+.+++.++..++.+...++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888999999999988887765 6778899999999999999999999999999888877766655555444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.59  E-value=1e-13  Score=142.57  Aligned_cols=138  Identities=11%  Similarity=0.030  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhh
Q 011529          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSK  221 (483)
Q Consensus       142 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (483)
                      .+...+..++.+++.++.|+++||+|||++++++.++.+++++++.+.+  +.+.+++.+++.|++.+..++...++++|
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677789999999999999999999999999999999998888887  77778888888898888888999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccC
Q 011529          222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      ++|.++|++++|+.++...+|.++||++++.+.+. +...+|++.+++.++..++.+++ |+
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PE  735 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PD  735 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            99999999999999999999999999999988764 45667777777776665555544 44

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.58  E-value=1.2e-13  Score=135.63  Aligned_cols=158  Identities=15%  Similarity=0.019  Sum_probs=129.5

Q ss_pred             hhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q 011529          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (483)
Q Consensus       121 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (483)
                      .....+.|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.+...++.++..+.+  +.+.+.+.
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  314 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLLA  314 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHH
Confidence            3344557777788899999999999999999999999999999999999998887777777666666666  67777778


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHHHHHHH
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLS  279 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  279 (483)
                      .++.|++.+...+...+++.|.+|+++|++..|+.+....+|..+||.++|.+.++.+ |...+++.....++..+..+.
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            8888988888888889999999999999999999999999999999999999988754 555565555555554444443


Q ss_pred             h
Q 011529          280 K  280 (483)
Q Consensus       280 ~  280 (483)
                      .
T Consensus       395 ~  395 (406)
T PRK11551        395 L  395 (406)
T ss_pred             H
Confidence            3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.58  E-value=8.6e-14  Score=139.06  Aligned_cols=175  Identities=13%  Similarity=0.038  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      ++.+.+..++.+........++|. +.+++|.+..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            333444455545444456666776 5577999999999999999999999999999999999999887665444443332


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHh-HHHHHHhhHHHhhh--------
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIH--------  255 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~--------  255 (483)
                      +..+....+.+.+.+.+++.|++.............|.+|+++|+++.|+.+...++ |..++|.+.|.+.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            222221115666667788888654433333346777999999999999999999997 77999999999999        


Q ss_pred             ----ccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          256 ----RFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       256 ----~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                          ..+|+..|++.++..++..+..+..
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                5789999998877777765554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.57  E-value=2.1e-13  Score=132.57  Aligned_cols=160  Identities=12%  Similarity=0.032  Sum_probs=138.2

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcc
Q 011529          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL  192 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  192 (483)
                      .++.......+....|.+.+++|.++.++|++.++..++..+..++.+++.||+|+|+.+.++.++..+..++.++.+  
T Consensus       214 ~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--  291 (382)
T TIGR00902       214 VCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--  291 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--
Confidence            333344444455566776678999999999999999999999999999999999999999999999999999888888  


Q ss_pred             cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHH-HHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHH
Q 011529          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT  271 (483)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  271 (483)
                      +.+.+++.+++.|++.+...+....++.+. |+++|++..++++ ...++|..+||.++|++.++.|+ ..|++.+++.+
T Consensus       292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~  369 (382)
T TIGR00902       292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAA  369 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence            899999999999999999999999999998 8999999999986 56789999999999999999986 66777777776


Q ss_pred             HHHHH
Q 011529          272 VWFTV  276 (483)
Q Consensus       272 ~~~~~  276 (483)
                      +..++
T Consensus       370 ~~~~~  374 (382)
T TIGR00902       370 AAFFL  374 (382)
T ss_pred             HHHHH
Confidence            65444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.57  E-value=6.1e-14  Score=129.85  Aligned_cols=183  Identities=13%  Similarity=0.062  Sum_probs=152.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc--CCchHH-HHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGV  176 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~  176 (483)
                      .+.+.++.+++++++.+..+..+.-+.|. +.|..|.|..+.++..+.+-++.+.+.+++|+++||+  |||..+ ++.+
T Consensus       249 L~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            34457788889999999999999888887 7778899999999999999999999999999999996  666654 4455


Q ss_pred             HHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHh-HHHHHHhhHHHhhh
Q 011529          177 VWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIH  255 (483)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~  255 (483)
                      +...++.+...+.++.|++...++.++.|+..-+..-.......|..|++-.|++.|+...+..+ |...+....+++.+
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            55555666666666556788899999999988777777778889999999999999999999999 99999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhccC
Q 011529          256 RFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       256 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      .+||...|.+..+.++++.++.+.....
T Consensus       409 ~~gW~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         409 TWGWDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998887777776665554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.56  E-value=5.3e-13  Score=129.91  Aligned_cols=338  Identities=16%  Similarity=0.103  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChh-hHHHHHH----HHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH
Q 011529          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPA-TVGLIQS----SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW  178 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~~----~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  178 (483)
                      ......++-.+..++.........+.....++.+.. ..+....    ...+...+..+..|.++||+|||..+....+.
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            344444444555555554455555555555543322 2233333    33678889999999999999999999999988


Q ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhhh--hhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          179 WSIATALTPVAAKLGLPFLLVVRVFMGIG--EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      ..+..+...+..   +|.++    +.++.  .+.......++++|....++|...+|+.+.....+..++|.+++.+.+.
T Consensus       102 ~~l~~~~~~~~~---~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen  102 TILPALCLLFQG---YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF  174 (463)
T ss_pred             HHHhHHHHHHHH---HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            888877766653   44433    33332  2445677889999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHh-hhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHH
Q 011529          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI-VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNW  335 (483)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (483)
                      .|.-..|.+..+..++..+..+...|++..+++.......+.. ...............+..-++|..+.+.+..++...
T Consensus       175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~  254 (463)
T KOG2816|consen  175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSL  254 (463)
T ss_pred             cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHH
Confidence            9999999999999998888888888876554443310000000 000000000001111112234555555555555444


Q ss_pred             HHHHHHH-hhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 011529          336 GTFILLT-WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGG-WIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL  413 (483)
Q Consensus       336 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (483)
                      ....-.. ..+.|++..+++++.+.+.+.+..+....++.++.. .+...++.++         .+..++..-.+.....
T Consensus       255 ~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~---------~i~lGl~~~~~~~~~~  325 (463)
T KOG2816|consen  255 PEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR---------LISLGLLSEFLQLLLF  325 (463)
T ss_pred             HHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------HhhHHHHHHHHHHHHH
Confidence            4433222 457788888999999999999999988888888866 6777777763         4445555555555554


Q ss_pred             hccchhHHHHHHHHHhhhhhhhhhchhhhhHhh-hccCcceeeeee
Q 011529          414 SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSVSIISI  458 (483)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~  458 (483)
                      ......|.......+... .....+...+.... ..++++|.++++
T Consensus       326 af~~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~  370 (463)
T KOG2816|consen  326 AFATETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEEQGKVFGI  370 (463)
T ss_pred             HHhccchhhhHHHHHHHh-hcchhHHHHhHHHhhcccccccchhhH
Confidence            455444443333333332 23344555555554 457788998874

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.56  E-value=1.2e-13  Score=135.72  Aligned_cols=160  Identities=17%  Similarity=0.165  Sum_probs=131.2

Q ss_pred             hhHHhhhhhhhhcCCChh----hHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHH
Q 011529          122 NMSIAILPMSAEFNWNPA----TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (483)
Q Consensus       122 ~~~~~~~~~~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (483)
                      ...+.++.+.++.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+.++..++.+...+.+  +.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  314 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHHH
Confidence            344455555444333322    346666777888889999999999999999999988888877777766666  78888


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 011529          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  277 (483)
                      ++.+++.|++.+...+...+.+.+..|++++++.+++.+....+|..+||.++|.+.+..||++.|++.+++.++..+..
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999998888877666


Q ss_pred             HHhccC
Q 011529          278 LSKAHS  283 (483)
Q Consensus       278 ~~~~~~  283 (483)
                      +...++
T Consensus       395 ~~~~~~  400 (408)
T PRK09874        395 WNSLRR  400 (408)
T ss_pred             HHHHHH
Confidence            554433

>PRK12382 putative transporter; Provisional

Probab=99.55  E-value=4.4e-13  Score=131.01  Aligned_cols=155  Identities=19%  Similarity=0.194  Sum_probs=130.9

Q ss_pred             hhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q 011529          122 NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (483)
Q Consensus       122 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (483)
                      ......+.+.++.+.+.  .++....+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.+  +.+.+++..
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  309 (392)
T PRK12382        234 VIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALAGA  309 (392)
T ss_pred             HHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence            34445555556666653  45666778888889999999999999999999999888888887777776  777888889


Q ss_pred             HHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      ++.|++.+...+...+.+.+.+|+++|++++|+.+....+|..++|.+.+.+.++.||+..|.+.+++.++..+..+..
T Consensus       310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999888888888999999999999999999999999999999999999999999999999988887776665544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.54  E-value=2.2e-13  Score=134.27  Aligned_cols=160  Identities=13%  Similarity=0.044  Sum_probs=135.9

Q ss_pred             hHHhhhhhhhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q 011529          123 MSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (483)
Q Consensus       123 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (483)
                      +....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.+  +.+...++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHH
Confidence            34456766555 899999999999999999999999999999998888888888888888877777776  777778888


Q ss_pred             HHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhc
Q 011529          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      ++.|++.+...+...+++.+..|++.|++++|+++....+|..+||.+.|.+.+..|++..+++.+++.++..++.....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            89999888777888889999999999999999999999999999999999999999999888888877766666655554


Q ss_pred             cCC
Q 011529          282 HSS  284 (483)
Q Consensus       282 ~~~  284 (483)
                      ++.
T Consensus       400 ~~~  402 (417)
T PRK10489        400 GEL  402 (417)
T ss_pred             ccc
Confidence            443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.54  E-value=6.4e-13  Score=129.78  Aligned_cols=167  Identities=15%  Similarity=0.021  Sum_probs=120.8

Q ss_pred             HHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCch--HHHH------HHHHH
Q 011529          109 CFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA--VLGF------GVVWW  179 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~------~~~~~  179 (483)
                      ..+..++.......+....|. +.+++|.+..+.+++.+...++..++.++.|++.||++||+  ....      +.++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
T TIGR00893       220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL  299 (399)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            344444445555556666666 45668999999999999999999999999999999999996  1111      11111


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-
Q 011529          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-  258 (483)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  258 (483)
                      .+........+  +.+..+....+.+++.+ ..+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..| 
T Consensus       300 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~  376 (399)
T TIGR00893       300 SLLMFATNYVN--IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS  376 (399)
T ss_pred             HHHHHHhccch--hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence            11111111122  33344444444444444 788899999999999999999999999999999999999999999988 


Q ss_pred             chHHHHHHHHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTVWFTVWL  278 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~  278 (483)
                      |+..+++.+++.++..+..+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       377 FAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            99999988877776655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.54  E-value=6.8e-13  Score=129.55  Aligned_cols=152  Identities=15%  Similarity=0.066  Sum_probs=124.0

Q ss_pred             hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH-hhhhhcccHHHHHHHHHHHh
Q 011529          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL-TPVAAKLGLPFLLVVRVFMG  205 (483)
Q Consensus       127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~G  205 (483)
                      .|.+.++.|.+..+.+++.+...++..++.++.|++.||+++|+.. .+..+..++... ....+  +.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN--SEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHH
Confidence            3445666899999999999999999999999999999999987654 444444444333 33444  6777888889999


Q ss_pred             hhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhcc
Q 011529          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAH  282 (483)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  282 (483)
                      ++.+...+...+.+.+..| ++|++++|+.+....+|..+||.++|.+.+++|++..|++.+.+.++..+......+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9887777777888888875 688999999999999999999999999999999999999999888887776666554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.54  E-value=6.9e-14  Score=140.35  Aligned_cols=182  Identities=12%  Similarity=0.059  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHH
Q 011529          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (483)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (483)
                      +..+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            33444444444444444445566678888889999988999999999999999999999999999999999888877777


Q ss_pred             HHHhhh---hhcc------cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHh
Q 011529          183 TALTPV---AAKL------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (483)
Q Consensus       183 ~~~~~~---~~~~------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (483)
                      .+++.+   ....      +...+....++.+.......+....++.|.+|+++|++++++.+....+|.+++|.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666552   1110      1122222222222222233466677889999999999999999999999999999999999


Q ss_pred             hhccCchHHHHHHHHHHHHHHHHHHHhccCC
Q 011529          254 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (483)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (483)
                      .++.+|++.|++.++++++..++.++..+++
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHheecccC
Confidence            9989999999998888887777766655543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.53  E-value=7.1e-13  Score=128.73  Aligned_cols=152  Identities=13%  Similarity=0.065  Sum_probs=126.5

Q ss_pred             Hhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q 011529          125 IAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF  203 (483)
Q Consensus       125 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  203 (483)
                      ..+|. +.+++|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+......+.+  +.+.+++.+++
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  297 (375)
T TIGR00899       220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN--SLWALLMLQLL  297 (375)
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            34454 5577899999999998888888888899999999999999998888776666655555555  67778888899


Q ss_pred             HhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 011529          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (483)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  279 (483)
                      .|++.+...+....++.|..|+ ++++++++.+....+|..++|.++|.+.+..||+..|++.+++.++..+...+
T Consensus       298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            9999888888888899998864 66799999999999999999999999999999999999888877776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=5.8e-13  Score=127.81  Aligned_cols=164  Identities=25%  Similarity=0.385  Sum_probs=145.5

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhc-CCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCch-HHHHHHHHHHHHHHHhhhhh
Q 011529          113 FLLCNMDRVNMSIAILPMSAEF-NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA-VLGFGVVWWSIATALTPVAA  190 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~  190 (483)
                      .+.............|.+.++. |.+..+.++..+...++..++.++.+++.||+|||+ .+..+.++..++.+.....+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3444445555666677755554 999999999999999999999999999999999999 99999999999998888887


Q ss_pred             cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHH
Q 011529          191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (483)
Q Consensus       191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  270 (483)
                        +.+.+.+..++.|++.+...+...+++.|..|+++|++.+++.+....+|..++|.+.+.+.+..+|+..+.+.+++.
T Consensus       264 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~  341 (352)
T cd06174         264 --SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA  341 (352)
T ss_pred             --cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence              788899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 011529          271 TVWFTVWL  278 (483)
Q Consensus       271 ~~~~~~~~  278 (483)
                      ++..+...
T Consensus       342 ~i~~i~~~  349 (352)
T cd06174         342 LLAALLLL  349 (352)
T ss_pred             HHHHHHhe
Confidence            87766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.52  E-value=4.1e-13  Score=133.62  Aligned_cols=173  Identities=12%  Similarity=0.035  Sum_probs=117.6

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc--CCchHH-HHHHHHHHHHHHH
Q 011529          110 FSAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSIATAL  185 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~~~  185 (483)
                      .+..++..........++|.+. ++.|.+..+.+++..++.++..++.++.|+++||+  +||+.. +....+..++.++
T Consensus       259 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~  338 (452)
T PRK11273        259 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV  338 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH
Confidence            3333333333444556677755 45799999999999999999999999999999999  555432 2222333333333


Q ss_pred             hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHH-HHhhHHHhhhccCchHHHH
Q 011529          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT-GLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~g~~~~~~  264 (483)
                      +.+.+..+.+..++..++.|.+..........+..|.+|+++|++++|+.+....+|..+ +|.+.|.+.++.||+..|+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~  418 (452)
T PRK11273        339 YWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  418 (452)
T ss_pred             HHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHH
Confidence            222221144444455555565433333334456789999999999999999988888654 7999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 011529          265 SFGSLGTVWFTVWLSKAH  282 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~  282 (483)
                      +.++.+++..+.......
T Consensus       419 ~~~~~~~~~~~~~~~~~~  436 (452)
T PRK11273        419 VMIGGSILAVILLIVVMI  436 (452)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            888877776665554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.52  E-value=1.4e-12  Score=126.90  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=125.6

Q ss_pred             hHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      ...++|.+.++.|.++.+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+...  .  . .......+
T Consensus       219 ~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~-~~~~~~~~  293 (381)
T PRK03633        219 LYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S--Q-AAMAPALF  293 (381)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h--h-HHHHHHHH
Confidence            33456777777899999999999999999999999999999999999999888877777665432  2  2 22334566


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      +.|++.....|...+.+.|..|+++++...+..+...++|..+||.++|++.++.+|++.|.+.+.+.++..+..++.
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            777777777899999999999888888888888899999999999999999999999999999888887665555443

>PRK03699 putative transporter; Provisional

Probab=99.52  E-value=9.3e-13  Score=128.71  Aligned_cols=166  Identities=12%  Similarity=0.126  Sum_probs=132.5

Q ss_pred             HHHHHhhhhhhhHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh
Q 011529          112 AFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA  190 (483)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  190 (483)
                      ..++.......+..++|.+. +++|.+..+.+.+.+.+.++..++.++.|+++||+++|+.+.....+..+...+....+
T Consensus       213 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~  292 (394)
T PRK03699        213 AALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC
Confidence            33333334444556677755 67899999999999999999999999999999999999998887777776666665565


Q ss_pred             cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHH
Q 011529          191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (483)
Q Consensus       191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  270 (483)
                        +.+.+.+..++.|++.+..++...++..+..| +++++..+.......+|..++|.+.|.+.+..|++..+++.+++.
T Consensus       293 --~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~  369 (394)
T PRK03699        293 --DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLY  369 (394)
T ss_pred             --CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHH
Confidence              66667777888898888788888888888774 556788899999999999999999999999999999999888877


Q ss_pred             HHHHHHHHHh
Q 011529          271 TVWFTVWLSK  280 (483)
Q Consensus       271 ~~~~~~~~~~  280 (483)
                      +++.+.+...
T Consensus       370 ~~~~~~~~~~  379 (394)
T PRK03699        370 AVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHH
Confidence            7765544443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.51  E-value=2.2e-12  Score=125.95  Aligned_cols=166  Identities=14%  Similarity=0.010  Sum_probs=129.0

Q ss_pred             hhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHH
Q 011529          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (483)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (483)
                      .........++|.+.+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+. +...
T Consensus       218 ~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~  296 (393)
T PRK09705        218 NGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-QLPV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-hHHH
Confidence            334444555677766778999999999999999999999999999999999999988888777777665543331 2222


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcC-CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWF  274 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~  274 (483)
                      +  ..++.|++.+...+.......+..+ ++++++.+|+.+....++..++|.+.|++.+..| |...|.+.++.+++..
T Consensus       297 ~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (393)
T PRK09705        297 L--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM  374 (393)
T ss_pred             H--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            2  2345678877778877777777775 5789999999999999999999999999999876 7777888777777766


Q ss_pred             HHHHHhccCCC
Q 011529          275 TVWLSKAHSSP  285 (483)
Q Consensus       275 ~~~~~~~~~~~  285 (483)
                      +....+.++++
T Consensus       375 ~~~~~~~~~~~  385 (393)
T PRK09705        375 IITLRFAPARF  385 (393)
T ss_pred             HHHHHhccccc
Confidence            66666665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.51  E-value=8.4e-13  Score=130.63  Aligned_cols=173  Identities=10%  Similarity=0.001  Sum_probs=117.6

Q ss_pred             HHHHHHhhhhhhhHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc--CCchHH-HHHHHHHHHHHHHh
Q 011529          111 SAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVL-GFGVVWWSIATALT  186 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~~~~  186 (483)
                      +..+........+..++|.+. +++|.+..+.+...+...++..++.++.|+++||+  ++|+.. ....+...+.....
T Consensus       250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~  329 (434)
T PRK11663        250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence            334444444444555667654 67899999999999999999999999999999998  333332 22111111111111


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                      ...+..+.....+..+..|++...........+.|.+|+++|++++|+.+....+|..++|.+.|++.++.||+..|++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~  409 (434)
T PRK11663        330 WLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVI  409 (434)
T ss_pred             HHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHH
Confidence            11111133333344444555433223334456789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccC
Q 011529          267 GSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~  283 (483)
                      +++.++..+..+...++
T Consensus       410 ~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        410 SIAAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88887776666554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=1.5e-13  Score=136.57  Aligned_cols=161  Identities=14%  Similarity=0.159  Sum_probs=127.7

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc--CCchHHHH--HHHHHHHHHHHhhh
Q 011529          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGF--GVVWWSIATALTPV  188 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~--~~~~~~~~~~~~~~  188 (483)
                      .++...........+|.+.+++|.+..+.+++.++..++..+++++.|++.||.  ++|+...+  +.++.+++.++..+
T Consensus       250 ~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~  329 (455)
T TIGR00892       250 NVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL  329 (455)
T ss_pred             HHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333434444556776778899999999999999999999999999999974  33433333  33333444445555


Q ss_pred             hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc-CchHHHHHHH
Q 011529          189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFG  267 (483)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~  267 (483)
                      .+  +++.+++.+++.|++.+...+...+++.|.+|++++++.+|+++....+|..+||.++|.+.+.. +|++.|++.+
T Consensus       330 ~~--~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~  407 (455)
T TIGR00892       330 AG--DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG  407 (455)
T ss_pred             hc--hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence            66  78888889999999999888999999999999999999999999999999999999999999887 4999999888


Q ss_pred             HHHHHHHH
Q 011529          268 SLGTVWFT  275 (483)
Q Consensus       268 ~~~~~~~~  275 (483)
                      ++.++..+
T Consensus       408 ~~~li~~~  415 (455)
T TIGR00892       408 SIVVSAGL  415 (455)
T ss_pred             HHHHHHHH
Confidence            77666544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.50  E-value=2.4e-12  Score=120.80  Aligned_cols=176  Identities=14%  Similarity=0.176  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      +...+....+.....+..+.+.-|.+.+..|.+...++++..++.++..+++.+.|++.|| +.|+.+....++.++..+
T Consensus       213 v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l  291 (394)
T COG2814         213 VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALL  291 (394)
T ss_pred             HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHH
Confidence            3444444444445556667777888999999999999999999999999999999999999 889988888888777777


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  264 (483)
                      .+.+... +.+..++..++.|+............+.+ ..+|.++.+.+++....++|..+|..++|.+.+++|+....+
T Consensus       292 ~l~~~~~-~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~  369 (394)
T COG2814         292 ALTFTGA-SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGW  369 (394)
T ss_pred             HHHHhcc-hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            7666552 55667777777888777666666666666 337899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 011529          265 SFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~  283 (483)
                      +.+++.++..++.+...+.
T Consensus       370 ~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         370 VGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999888887776655443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.49  E-value=2.6e-10  Score=107.77  Aligned_cols=327  Identities=11%  Similarity=0.057  Sum_probs=219.5

Q ss_pred             Hhhhhhhhh-cCCChhhHH-HHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          125 IAILPMSAE-FNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       125 ~~~~~~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      ...|.+.+. .|++..|+. -+.-+..-.+....++...+.|..+.|++++++.+...+...++.+.+  +.+.+-+..+
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~  102 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQF  102 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHH
Confidence            345555555 789988875 455555566777888899999999999999999999999998888888  9999999999


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc--cCchHHHHHHHHHHHHHHHHHHHh
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      +.|++.+. ..+..+++-...|+++-.++.+...+...+|..++.+++-.++..  .+++....+......++.++.+++
T Consensus       103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999765 678889999999999999999999999999999999999888763  345555555444444444444444


Q ss_pred             ccCCCCC---CCCC--------ChhhHHHhhhcc---cCCCCCc-----------ccchhhhhcChhHHHHHHHHHHHHH
Q 011529          281 AHSSPAE---DPQL--------RPAEKKLIVSSC---ASKEPVK-----------TIPWGLILSKPPVWALIVSHFCHNW  335 (483)
Q Consensus       281 ~~~~~~~---~~~~--------~~~~~~~~~~~~---~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  335 (483)
                      ++.++..   ++..        +.++.+...+..   ++.++..           ..++++..++|.++...+.+.+...
T Consensus       182 P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atc  261 (412)
T PF01770_consen  182 PMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATC  261 (412)
T ss_pred             CCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence            3322210   0000        000000000000   0000000           1234556688999888888888888


Q ss_pred             HHHHHHHhhHHHHHHH--hCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 011529          336 GTFILLTWMPTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL  413 (483)
Q Consensus       336 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (483)
                      ++..+.++.....++.  .+-+....|.+-++..+.+.++.+..|++..++.+.       ....+....++.+..+...
T Consensus       262 gy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm  334 (412)
T PF01770_consen  262 GYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLM  334 (412)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            9988888888888774  233445568888888888888899999885555443       2233333344444445555


Q ss_pred             hccchhHHHHHHHHHhhhhhhhhhchhhhhHh-hhccCcceeeeeeeec
Q 011529          414 SHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRYSVSIISINIL  461 (483)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~  461 (483)
                      ...++.+...+..++......+..+.....+. ....+.-|..+|+|..
T Consensus       335 ~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  335 SFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHH
Confidence            56666666666666555555554444444433 4556778999998865

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.49  E-value=7.2e-13  Score=130.04  Aligned_cols=140  Identities=16%  Similarity=0.180  Sum_probs=114.9

Q ss_pred             HHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH-HhhhhhcccHHHHHHHH
Q 011529          124 SIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LTPVAAKLGLPFLLVVR  201 (483)
Q Consensus       124 ~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~  201 (483)
                      ...+|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+... .....+  +.+.+.+..
T Consensus       258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  335 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA--NVAVLGLGL  335 (405)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC--chHHHHHHH
Confidence            334454 5567899999999999999999999999999999999999998887766533332 222333  566666666


Q ss_pred             HHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHHHH
Q 011529          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYS  265 (483)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~  265 (483)
                      ++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|++.|.+.++.| |+..+..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            777777777778888999999999999999999999999999999999999999988 8766654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.49  E-value=1.1e-12  Score=132.39  Aligned_cols=150  Identities=12%  Similarity=0.135  Sum_probs=117.4

Q ss_pred             hHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q 011529          123 MSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (483)
Q Consensus       123 ~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (483)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+........+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445677755 6899999999999999999999999999999999999999888877666655444333321344444445


Q ss_pred             HHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHH
Q 011529          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (483)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  272 (483)
                      ++.++......+...+++.|.+|+++|++.+|+.+....+|..+||.++|.+.+.+||+..+...+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55444433445677788999999999999999999999999999999999999999999887665544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.49  E-value=4.4e-13  Score=130.89  Aligned_cols=161  Identities=12%  Similarity=0.131  Sum_probs=122.5

Q ss_pred             HHHHHHhhhhhhhHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHH-H-Hhh
Q 011529          111 SAFLLCNMDRVNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT-A-LTP  187 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~-~~~  187 (483)
                      ...+.............|.+. +++|.+..+.+.+.....++..++.++.|++.||+|||+.+.....+..+.. . ...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455556667654 7789999999999999999999999999999999999998775554443332 2 222


Q ss_pred             hhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHH-HHHHHHhHHHHHHhhHHHhhhccC-chHHHHH
Q 011529          188 VAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYS  265 (483)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~  265 (483)
                      +....+.+.+++..++.|++.+...+...+++.|.+|+++|+++.++ .+....+|..++|.++|.+.++.| |+..++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            22112566777778888998888889999999999999999999998 456667899999999999999888 8877666


Q ss_pred             HHHHHH
Q 011529          266 FGSLGT  271 (483)
Q Consensus       266 ~~~~~~  271 (483)
                      ..+..+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.47  E-value=2e-11  Score=122.37  Aligned_cols=154  Identities=14%  Similarity=0.145  Sum_probs=120.5

Q ss_pred             hhhhhhhcCCChhhHHHHHH-HHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh---hhhhcccHHHHHHHHH
Q 011529          127 ILPMSAEFNWNPATVGLIQS-SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV  202 (483)
Q Consensus       127 ~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~  202 (483)
                      .|.+.+++|.+..+++++.. ...++..++.++.|+++||+|+|+.+.++.++.++..+.+   .... .+.+.+.+..+
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~-~~~~~l~~~~~  324 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD-KNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            44456779999999999974 6678999999999999999999988776666555443322   2221 14555555566


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhc
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      +..++.+...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+..||+..|.+.+++.++..+.....+
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666656666777888899999999999999999999999999999999999999999999988888888766665554

>TIGR00897 2A0118 polyol permease family

Probab=99.46  E-value=4.4e-12  Score=124.29  Aligned_cols=166  Identities=16%  Similarity=0.194  Sum_probs=125.6

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHH-HHHHHHHHHHHHhhhhh-
Q 011529          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-FGVVWWSIATALTPVAA-  190 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~~-  190 (483)
                      .++............|.+.+++|.+..+.+.+.+...++..++.++.|+++||+|||+.+. .+.+...++.+.+.+.+ 
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~  310 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ  310 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445556778877889999999999999999999999999999999999988764 33333333333322211 


Q ss_pred             --cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 011529          191 --KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS  268 (483)
Q Consensus       191 --~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  268 (483)
                        ..+.+..++..++.|++.+...+ ....+.+.. +++|++++|+.+....+|..++|.+++.+.+..||...+++.++
T Consensus       311 ~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~  388 (402)
T TIGR00897       311 HFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA  388 (402)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence              11566677788888988776544 455666765 57899999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHh
Q 011529          269 LGTVWFTVWLSK  280 (483)
Q Consensus       269 ~~~~~~~~~~~~  280 (483)
                      +.++..++..+.
T Consensus       389 ~~~i~~~~~~~~  400 (402)
T TIGR00897       389 LYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHh
Confidence            877766655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.44  E-value=6.1e-12  Score=124.45  Aligned_cols=143  Identities=13%  Similarity=0.074  Sum_probs=107.5

Q ss_pred             hHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      +...+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....+..+...+.+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            44456777777899999999999999999999999999999999999998888877766655444333112222222222


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHH
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  265 (483)
                      ..+++.....+....++.|.+|+++|++++|+......+|..++|.+.|++.++.|+....++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            222222333455677889999999999999999999999999999999999998887654333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.44  E-value=8.2e-12  Score=121.50  Aligned_cols=148  Identities=16%  Similarity=0.088  Sum_probs=124.0

Q ss_pred             hHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      +....|.+.++.|.+..+.|.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++....+  +.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHH
Confidence            33445555577999999999999999999999999999999999999999999998888887777777  8888899999


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHH-HHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHH
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF  274 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~  274 (483)
                      +.|++.+...+....++.+. +++++++..++.+ ....+|..+||.++|.+.+.+|+ ..++..+++.++..
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            99999998888888888886 5667788899876 55678889999999999999887 46666666555443

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=1.2e-11  Score=122.57  Aligned_cols=160  Identities=13%  Similarity=0.001  Sum_probs=116.4

Q ss_pred             hhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh--hcccHHHH
Q 011529          121 VNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA--AKLGLPFL  197 (483)
Q Consensus       121 ~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  197 (483)
                      .....+.|. +.+++|.+......+..+..+...++.++.|+++||+|||+++..+.++..++.+.+...  ...+.+.+
T Consensus       267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T PRK09952        267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIV  346 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            334444554 556788888776666666777778889999999999999999888876665544333221  11134444


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHH-HHhHHHHHHhhHHHhhhcc--CchHHHHHHHHHHHHHH
Q 011529          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWF  274 (483)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~--g~~~~~~~~~~~~~~~~  274 (483)
                      ++..++.+++.+...+...+++.|.+|.+.|+.+.++.+.. ..+|+.++|.+.+++.+..  +|...+...++..++..
T Consensus       347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~  426 (438)
T PRK09952        347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            55667778888877888899999999999999999985544 5589999999999998743  48888777777777666


Q ss_pred             HHHHHh
Q 011529          275 TVWLSK  280 (483)
Q Consensus       275 ~~~~~~  280 (483)
                      +..+..
T Consensus       427 v~~~~~  432 (438)
T PRK09952        427 MTALLM  432 (438)
T ss_pred             HHHHHc
Confidence            555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.41  E-value=1.3e-11  Score=123.07  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=138.4

Q ss_pred             hHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q 011529          123 MSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVR  201 (483)
Q Consensus       123 ~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (483)
                      +...+|.+. +++|.++...|++.++..+|.+++.++.+++.+|+++++++..+.++.+++.+.+++.+  +.+..++..
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--SFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--HHHHHHHHH
Confidence            344577754 66899999999999999999999999999999999999999999999999999999988  889889999


Q ss_pred             HHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 011529          202 VFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS  279 (483)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  279 (483)
                      ++.|++.........+.+.+..|++.||+.++++++....+..+|..+.|.+.+.+|.+..+.+.++..++..++...
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888999999999999999999999999999999999999999999999999988877766555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.4e-11  Score=119.28  Aligned_cols=191  Identities=13%  Similarity=0.053  Sum_probs=144.1

Q ss_pred             cccCChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHH
Q 011529           96 WEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFG  175 (483)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~  175 (483)
                      .+++..|+.....+.+....+.-+......+...+.++-|++..+.-++.....+...+..+++..+.||+|||++++.+
T Consensus       262 ~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~  341 (485)
T KOG0569|consen  262 LKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLIS  341 (485)
T ss_pred             hcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            33444455555555555555555555566666778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcc--cH--H---HHHHHHHHHhhhhh-cchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHH
Q 011529          176 VVWWSIATALTPVAAKL--GL--P---FLLVVRVFMGIGEG-VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (483)
Q Consensus       176 ~~~~~~~~~~~~~~~~~--~~--~---~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  247 (483)
                      ..++.+..+++......  ..  |   ..+++.++..++.+ +..|..+-+.+|++|++.|..++++......+...+-.
T Consensus       342 ~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~  421 (485)
T KOG0569|consen  342 LSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVG  421 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence            99988887766543210  11  1   12333333333332 23578889999999999999999999999999998888


Q ss_pred             hhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 011529          248 AFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (483)
Q Consensus       248 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (483)
                      ..-..+.+.+|- ..|+...+.+++..+..++..||++.+
T Consensus       422 ~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  422 FAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            888888887776 778888888888888888888887544

>TIGR00895 2A0115 benzoate transport

Probab=99.39  E-value=3.5e-12  Score=124.78  Aligned_cols=142  Identities=13%  Similarity=0.169  Sum_probs=113.5

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh
Q 011529          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (483)
                      .+..++..........+.|.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+....+......++....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (398)
T TIGR00895       256 WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL  335 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            33333444444455566778888999999999999999999999999999999999999955444433333333333324


Q ss_pred             hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHh
Q 011529          190 AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (483)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (483)
                      .  +.+..++..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..+||.++|.+
T Consensus       336 ~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       336 F--SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             h--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            4  6777788889999999999999999999999999999999999999999999999999876

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.39  E-value=3.7e-11  Score=118.43  Aligned_cols=176  Identities=14%  Similarity=0.094  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHhhh-hhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCc--hHHHHHHHHHH
Q 011529          104 FIVVLCFSAFLLCNMD-RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK--AVLGFGVVWWS  180 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~  180 (483)
                      +.+...++++++..-+ .+..........+++|++..+...+..+..+..+++.+++|++.||+|.|  +++..+.++..
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            3444444444443333 33344444556679999999999999999999999999999999999999  88887777764


Q ss_pred             HHHHHhhh--------hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHH
Q 011529          181 IATALTPV--------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (483)
Q Consensus       181 ~~~~~~~~--------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (483)
                      +..+...+        .+  +.+.+.+..++.|++.|..++...++.+++.|+++.+..+|++.........+||++.|.
T Consensus       361 ~i~~~g~~G~~~~~~g~~--~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGLK--SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHHHHhhhcccCcc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443333        33  678899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccC-chHHHHHHHHHHHHHHHHHHHhc
Q 011529          253 LIHRFG-WPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       253 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      +.+..| -|..+....++.++.+++.+...
T Consensus       439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  439 ITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            999876 88888888777777766665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.38  E-value=2e-11  Score=119.45  Aligned_cols=141  Identities=8%  Similarity=0.060  Sum_probs=120.3

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhH
Q 011529          135 NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPA  214 (483)
Q Consensus       135 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  214 (483)
                      +.+....|++.++..+...++.+..|++.||+|+|+.+.++.++.++...+....+  +.+.+++.+++.|++.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--TALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHH
Confidence            55667889999999999999999999999999999999999988888877767777  8888888899999987766666


Q ss_pred             HHHHHhhhcCCcchhHHHHH-HHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 011529          215 MNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  277 (483)
                      ...+..+..+++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++..+..
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            67778888888888777766 6789999999999999999999999999999888877665543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.38  E-value=2e-11  Score=120.86  Aligned_cols=145  Identities=19%  Similarity=0.136  Sum_probs=104.9

Q ss_pred             HhhhhhhhHHhhhhhhh-hcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH-Hh-hhhhcc
Q 011529          116 CNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA-LT-PVAAKL  192 (483)
Q Consensus       116 ~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~-~~~~~~  192 (483)
                      ..........+.|.+.+ .+|.+..+.++......++..++.++.|+++||+|||+++..+.++..+... .. ......
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33444445566777554 5899999999999999999999999999999999999988776554433221 11 111211


Q ss_pred             cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHH-hHHHHHHhhHHHhhhccCch
Q 011529          193 GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY-LGSVTGLAFSPFLIHRFGWP  260 (483)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~g~~  260 (483)
                      ++..+.+..++.+++.+...+....++.|.+|+++|+.++++.+.... ++..++|.+.+++.++.|++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            444444445566677676667777889999999999999999655444 46788999999999988864

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=2e-11  Score=122.35  Aligned_cols=147  Identities=16%  Similarity=0.128  Sum_probs=118.5

Q ss_pred             HHHHhhhhhhhHHhhhhhhh-hcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc
Q 011529          113 FLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (483)
                      .++............|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.++...++.+...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
T PRK10504        270 SFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL  349 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc
Confidence            33333444445556777555 58999999999999999999999999999999999999999888888777666554321


Q ss_pred             -ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          192 -LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       192 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                       .+.+.+.+..++.|++.+...+....++.+..|+++++.++++.+....+|..+|+.++|.+.+..++
T Consensus       350 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        350 LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             13444556677888888888888999999999999999999999999999999999999999886665

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.37  E-value=6.8e-12  Score=121.20  Aligned_cols=133  Identities=17%  Similarity=0.236  Sum_probs=118.0

Q ss_pred             Hhhhhhhhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q 011529          125 IAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVF  203 (483)
Q Consensus       125 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  203 (483)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||++||+.+..+.++.+++.....+.+. +.+.+++..++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  310 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-NFPLFLVLWFA  310 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHH
Confidence            556776554 8999999999999999999999999999999999999998888777777777766662 37788888999


Q ss_pred             HhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      .|++.+...+...+++.|.+|+++|++..|+.+....+|..++|.++|.+.+++|
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999988654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.37  E-value=1.4e-11  Score=122.04  Aligned_cols=164  Identities=12%  Similarity=0.025  Sum_probs=112.0

Q ss_pred             hhhHHhhhhhh-hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH---HHHHHhhhhhcccHHH
Q 011529          121 VNMSIAILPMS-AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALTPVAAKLGLPF  196 (483)
Q Consensus       121 ~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~  196 (483)
                      ......+|.+. +..|.++.+.++......++..++.++.|++.||+++++....+..+..   ++.+.+...+..+.+.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            34445666654 4579999999999999999999999999999999965432222322221   1222212211113343


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhH-HHHHHhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLG-SVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  275 (483)
                      ..+..++.|++.............|.+|+++|+++.|+.+....+| ..++|.+.|.+.++.||...+++..++.++..+
T Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~  427 (438)
T TIGR00712       348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  427 (438)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            4444455555433322333356779999999999999999888876 578999999999999999999988887777776


Q ss_pred             HHHHhccCC
Q 011529          276 VWLSKAHSS  284 (483)
Q Consensus       276 ~~~~~~~~~  284 (483)
                      ..+...+++
T Consensus       428 ~~~~~~~~~  436 (438)
T TIGR00712       428 LLIVVMIGE  436 (438)
T ss_pred             HHHHHHhhc
Confidence            666665553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.35  E-value=1.6e-11  Score=114.11  Aligned_cols=176  Identities=17%  Similarity=0.090  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .+.+++.++........++..+|. +.++||.++.+.|.....+.+...+..+.+|+++||+|.+|++.+....++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            344555566666666667777777 7888999999999999999999999999999999999999999988888888877


Q ss_pred             Hhhhhhc-----ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-
Q 011529          185 LTPVAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-  258 (483)
Q Consensus       185 ~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  258 (483)
                      +..+...     .+....++..+..+++.+........+++.++ +++-|.+.|+..+.+.+|+..-|..-+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            7665531     14555555566666666666667788888888 5688999999999999999999999999988877 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcc
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAH  282 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~  282 (483)
                      +...|++...+.+++.++.+....
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999988888888776555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.35  E-value=3.6e-11  Score=120.84  Aligned_cols=165  Identities=13%  Similarity=0.037  Sum_probs=123.4

Q ss_pred             hhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhccc-H-HHH
Q 011529          120 RVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG-L-PFL  197 (483)
Q Consensus       120 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l  197 (483)
                      ........|.+.++.|.+....++......+...++.++.|+++||+|||++++.+.++.+++.+++......+ . ...
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            33444556888888998887777777788888999999999999999999999999998888877765432111 1 122


Q ss_pred             HHHHHHHhhhhhc-chhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHh------hhccCchHHHHHHHHHH
Q 011529          198 LVVRVFMGIGEGV-AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL------IHRFGWPSVFYSFGSLG  270 (483)
Q Consensus       198 ~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~g~~~~~~~~~~~~  270 (483)
                      ..+.++.+++.+. ..+....++.|.+|+++|++++|+.+....+|.++++.+.+.+      .+..+|+..|++.++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            3334444444433 3367789999999999999999999999999999886665544      35678888999888877


Q ss_pred             HHHHHHHHHhccCC
Q 011529          271 TVWFTVWLSKAHSS  284 (483)
Q Consensus       271 ~~~~~~~~~~~~~~  284 (483)
                      ++..++.+...+|+
T Consensus       447 ~~~~~~~~~~~~e~  460 (479)
T PRK10077        447 VLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHhccccC
Confidence            77766666655554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.35  E-value=2.6e-11  Score=120.29  Aligned_cols=176  Identities=16%  Similarity=0.145  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcC--CchHHHHHHHHHHH
Q 011529          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSI  181 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~  181 (483)
                      ..++.+.+...+..+........+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..++.++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            3556666677777777777888899999999999999999999999999999999999999988  44556677778888


Q ss_pred             HHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-ch
Q 011529          182 ATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WP  260 (483)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~  260 (483)
                      +.+.+++.+  +++.++...++.|++.|.........+.|+.+.++-..+.|+...+..++.++||+++|.+.+..+ |.
T Consensus       378 ~~~~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  378 ARLFLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            888888888  999999999999999998888888899999999999999999999999999999999999999877 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 011529          261 SVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      ..|+..++..++....++...
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999999988888776665554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.34  E-value=1.5e-11  Score=119.49  Aligned_cols=153  Identities=13%  Similarity=0.093  Sum_probs=108.9

Q ss_pred             HHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCC-chHHH-HHH-HHHHHHHHHh
Q 011529          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLG-FGV-VWWSIATALT  186 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~-~~~-~~~~~~~~~~  186 (483)
                      +..++............|. +.+++|.++.+.+++.+...++..++.++.|++.||..+ |+... ... ....++....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
T TIGR00881       223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY  302 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            3333334444444555565 456789999999999999999999999999999998643 33222 211 1222222222


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  263 (483)
                      ...+..+.+..++..++.|+......+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.++.||++.|
T Consensus       303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       303 WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            22111145556666777777666666667788999999999999999999999999999999999999999998753

>PRK10054 putative transporter; Provisional

Probab=99.34  E-value=3.7e-11  Score=117.26  Aligned_cols=151  Identities=11%  Similarity=0.083  Sum_probs=123.1

Q ss_pred             hhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcc
Q 011529          132 AEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVA  211 (483)
Q Consensus       132 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  211 (483)
                      ++.+.+....+++.....+.....+++.|++.||+++|+.+..+.++..++.+...+..+ +.+.+++..++.|+|.+..
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~  315 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN-SLLLWGMSAAVFTVGEIIY  315 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHHHH
Confidence            456777888888988888888888899999999999999999998888888776665421 6677777888999998888


Q ss_pred             hhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccCC
Q 011529          212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (483)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (483)
                      .|...+.+.+..|++.|++.++..+ ...+|..+||.++|.+.++.|....|++.++...+..++.++..+++
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRAR  387 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccC
Confidence            8888899999999999999998765 56689999999999999999988888887776666655555433333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.34  E-value=5.2e-11  Score=116.28  Aligned_cols=151  Identities=17%  Similarity=0.132  Sum_probs=114.7

Q ss_pred             hhhhhhhhcCCChhhHHHHHHHHHH-HHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh----cccHHHHHHH
Q 011529          126 AILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA----KLGLPFLLVV  200 (483)
Q Consensus       126 ~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~  200 (483)
                      ..+.+.+|.|+++.++|++.....+ ...++.++.|++.||+|+|+.+..+.++.++..+......    ..+.+.+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            4556666789999999999888764 6667789999999999999998877766533332221111    0133344455


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCC-cchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  276 (483)
                      ..+.+++.+...+...+...+..++ +++++.+++.+...++|..+||.++|.+.+..|++..|.+.+++.++..+.
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            5566677777778888887777766 889999999999999999999999999999999999998887766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.34  E-value=1.2e-10  Score=109.38  Aligned_cols=159  Identities=9%  Similarity=0.084  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhh---hcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSA---EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA  182 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  182 (483)
                      +.+..+..++..........+.+.+.+   .+|.++.+.++..+.+..+..++.++.+++.||+|+|+.+.++.++..++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            333444444444345555555666543   36999999999999999999999999999999999999988888877777


Q ss_pred             HHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHH
Q 011529          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (483)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  262 (483)
                      .++....+  +.. .....++.|++.+..+|...+...+..|+ +.+++.++. .+..+|..++|.+.|.+.+..|.+..
T Consensus       222 ~~l~~~~~--~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a  296 (310)
T TIGR01272       222 SIGAALTH--GYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLA  296 (310)
T ss_pred             HHHHHHcC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHH
Confidence            66555544  333 23456688999999999999999988854 456677775 67779999999999999999998888


Q ss_pred             HHHHHHH
Q 011529          263 FYSFGSL  269 (483)
Q Consensus       263 ~~~~~~~  269 (483)
                      |++..+.
T Consensus       297 ~~v~~~~  303 (310)
T TIGR01272       297 FALPVPC  303 (310)
T ss_pred             HHHHHHH
Confidence            8754433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.33  E-value=1.9e-10  Score=112.30  Aligned_cols=146  Identities=11%  Similarity=0.029  Sum_probs=116.5

Q ss_pred             hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH-HHHHHHHhhhhhcccHHHHHHHHHHHh
Q 011529          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIATALTPVAAKLGLPFLLVVRVFMG  205 (483)
Q Consensus       127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (483)
                      .|.+.+++|.+..+.+.+.....++..++.++.+++.||.++ +.++.+.++ .....++....+  +.+.+.+..++.|
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGS--DKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Confidence            466778889999999999999999999999999999999654 444444344 333344444445  6777888889999


Q ss_pred             hhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 011529          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV  276 (483)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  276 (483)
                      ++.+...+...+++.+..| +++++..+......++|..+||.++|.+.+..|++..+...+++.++..+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            9999889989989998885 667788888888999999999999999999999998888877666554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.33  E-value=3.8e-11  Score=114.09  Aligned_cols=162  Identities=10%  Similarity=0.069  Sum_probs=137.4

Q ss_pred             hHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          123 MSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       123 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      +..+...+-++-+.+....|.+.++..+.-++...+..++.+|+|.|+.++++..++.+=.+++++++  +.+.+.+.+.
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~~~i~~~kl  320 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NPWVISLIKL  320 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Confidence            44444444455556677899999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHH-HHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhc
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      +.|+-.+....+...++.+.+|+|..++...+ .+...++|..+.+.++|.+.|+.|.+.+|++++.+.++..++..+..
T Consensus       321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            99999999999999999999998888888888 47889999999999999999999999999999988887777776666


Q ss_pred             cCCCC
Q 011529          282 HSSPA  286 (483)
Q Consensus       282 ~~~~~  286 (483)
                      +++++
T Consensus       401 ~~~~~  405 (412)
T PF01306_consen  401 KKDKK  405 (412)
T ss_dssp             --SSS
T ss_pred             cCCCc
Confidence            55433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.33  E-value=1.1e-10  Score=115.55  Aligned_cols=159  Identities=11%  Similarity=0.029  Sum_probs=103.0

Q ss_pred             hhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh--hhhcccHHH
Q 011529          120 RVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP--VAAKLGLPF  196 (483)
Q Consensus       120 ~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~  196 (483)
                      ...+..++|. +.+++|.+..+.+...++..+...+++++.|+++||+|||+++.++.++.++......  .....+.+.
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            3344556676 4566899999999999988888899999999999999999988776655433332211  111112232


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHh-HHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWF  274 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~  274 (483)
                      .+....+.+++.+...+....++.|++|++.|++++|+.+...++ .....|.+.+.+ +..| |...+++.++..++..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHH
Confidence            222222233333344455678899999999999999998876654 344577777755 4445 5555565555555554


Q ss_pred             HHHHH
Q 011529          275 TVWLS  279 (483)
Q Consensus       275 ~~~~~  279 (483)
                      +..++
T Consensus       418 ~~~~~  422 (432)
T PRK10406        418 LVSLM  422 (432)
T ss_pred             HHHHH
Confidence            44443

>TIGR00898 2A0119 cation transport protein

Probab=99.33  E-value=3.2e-11  Score=122.03  Aligned_cols=148  Identities=12%  Similarity=-0.039  Sum_probs=112.8

Q ss_pred             hhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhh
Q 011529          128 LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIG  207 (483)
Q Consensus       128 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  207 (483)
                      +...+.++.+...   ...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.+..+.+..++..++.+++
T Consensus       347 ~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  423 (505)
T TIGR00898       347 VLDLGNLGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG  423 (505)
T ss_pred             hccccccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            3344555555433   3334566777888999999999999999999999888888777766522234555566677777


Q ss_pred             hhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      .+..++....+..|.+|++.|++++|+.+....+|.+++|.+.+ + ...++...+.+.++..++..++.++.
T Consensus       424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence            77778888999999999999999999999999999999999988 4 34566777777777777766655543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.32  E-value=1.6e-11  Score=123.94  Aligned_cols=162  Identities=10%  Similarity=0.004  Sum_probs=107.7

Q ss_pred             hhHHhhhhhhhhcCCChhhHHH------------HHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh
Q 011529          122 NMSIAILPMSAEFNWNPATVGL------------IQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (483)
Q Consensus       122 ~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (483)
                      ......|.+.++.|.+..+.+.            ...+..++..++.++.++++||+|||++++++.++.+++.++..+.
T Consensus       306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            3444577777788876542211            2234445666788899999999999999988887777766555443


Q ss_pred             hc--ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc----------c
Q 011529          190 AK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------F  257 (483)
Q Consensus       190 ~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~  257 (483)
                      ..  .+...+....+...++.....+....+..|.+|++.|+++.|+.+....+|.+++|.+.+.+.+.          .
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (502)
T TIGR00887       386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI  465 (502)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence            21  01111111111222222234456677889999999999999999999999999999999998873          3


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhccCC
Q 011529          258 GWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (483)
Q Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (483)
                      ++...|++.+++.++..+.. ++.||+
T Consensus       466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt  491 (502)
T TIGR00887       466 WMGHVLEIFALFMFLGILFT-LLIPET  491 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHh-eEeccC
Confidence            44567777777776665544 344554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.31  E-value=5.8e-12  Score=114.06  Aligned_cols=133  Identities=12%  Similarity=0.108  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccH--HHHHHHHHHHhhhhhcchhHHHHHHhhhcC
Q 011529          147 SFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL--PFLLVVRVFMGIGEGVAMPAMNNILSKWVP  224 (483)
Q Consensus       147 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (483)
                      +..+....+.++.+++.||+|||+.|..+.++++++.++...+...|.  .++..+|++    ..+.+.+.+.|..|.+|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYP  464 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccc
Confidence            345566778899999999999999999999999999888877663232  223344544    44556677889999999


Q ss_pred             CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccCCC
Q 011529          225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (483)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (483)
                      ...|+.+.|....+..+|+++.|+++  +.....-..+..+.+.+++++.+...+++-+++
T Consensus       465 TavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  465 TAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            99999999999999999999999998  333334455666677777777777777666543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.31  E-value=4.6e-11  Score=118.61  Aligned_cols=145  Identities=14%  Similarity=0.149  Sum_probs=113.2

Q ss_pred             HHHHhhhhhhhHHhhhhhhhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc
Q 011529          113 FLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (483)
                      .++............+.+.++ ++ +..+.+++.++..++..++.+++++++||+|+|+++..+.++.+++.+...+.+ 
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-  308 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-  308 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-
Confidence            333333333333334444333 34 566778888888999999999999999999999999999888888777665543 


Q ss_pred             ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcC-------CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      .+.+.+++..++.|++.+...+...++++|..+       ++++|..+|+.+....+|..+++.+.|.+.+..||
T Consensus       309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            156677778888999999888999999988865       45679999999999999999999999999987776

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.31  E-value=1.5e-10  Score=113.77  Aligned_cols=157  Identities=11%  Similarity=0.013  Sum_probs=119.3

Q ss_pred             Hhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh---cccHHHHHHH
Q 011529          125 IAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA---KLGLPFLLVV  200 (483)
Q Consensus       125 ~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~  200 (483)
                      ...|. +.+++|.++.+.++......++..++.++.|++.||+++|+.+.++.++..++.++..+.+   ..+.+.+++.
T Consensus       236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            33455 4567899999999988888888999999999999999999999888887777766655432   1256667788


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      .++.|++.+...+......... ++++|++..+..+....+|..+|+.+++.+.+..++....+..++..++..+.....
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIF  394 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999887777666655444 458999999999999999999999999999888787665555444444443433333


Q ss_pred             cc
Q 011529          281 AH  282 (483)
Q Consensus       281 ~~  282 (483)
                      .+
T Consensus       395 ~~  396 (406)
T PRK15402        395 LK  396 (406)
T ss_pred             hc
Confidence            33

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.30  E-value=1.9e-10  Score=111.25  Aligned_cols=172  Identities=17%  Similarity=0.215  Sum_probs=134.2

Q ss_pred             HHHHHHhhhhhhhHHhhhhhhhhcC-CChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh
Q 011529          111 SAFLLCNMDRVNMSIAILPMSAEFN-WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA  189 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  189 (483)
                      +..++.......+..+.+.+.++.| .+....+.+.++..+.-++.-...+++..|+|.|+++.++.+..++=..+.+..
T Consensus       214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555556666666777778887 678888988899999999999999999999999999999999999888888777


Q ss_pred             hcccHHHHHH----HHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHH-HHhHHHHHHhhHHHhhhccCchH---
Q 011529          190 AKLGLPFLLV----VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSPFLIHRFGWPS---  261 (483)
Q Consensus       190 ~~~~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~g~~~---  261 (483)
                      .+ +.+...+    ...+.|+..+..+.+...++.+..|++.|+++.++++.. .++|..+|..++|++.+++|-+.   
T Consensus       294 ~~-~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~  372 (400)
T PF03825_consen  294 SD-PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFD  372 (400)
T ss_pred             cC-CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhh
Confidence            21 4433333    345799999999999999999999999999999998765 68999999999999999877543   


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhccC
Q 011529          262 ---VFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       262 ---~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                         .+.+.+++.++..+++....++
T Consensus       373 ~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  373 WSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC
Confidence               4445555555555554444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.29  E-value=2.3e-10  Score=111.32  Aligned_cols=151  Identities=11%  Similarity=-0.012  Sum_probs=111.2

Q ss_pred             hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh-hhcccHHHHHHHHHHHh
Q 011529          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-AAKLGLPFLLVVRVFMG  205 (483)
Q Consensus       127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~G  205 (483)
                      .|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .+  +.+..++..++.+
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~  300 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG--MKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence            44566678999999999999999999999999999999999999998888887777655543 33  4455556666666


Q ss_pred             hhhhcchhHHHH-HHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc-cCchHHHHHHHHHHHHHHHHHHHhc
Q 011529          206 IGEGVAMPAMNN-ILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       206 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      ++.....+.... ...+..+++.++..  ..+....+|..+||.++|++.+. .+|++.+.+.+++.++.........
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            665544444443 34444444444443  34677899999999999999985 6899999988777766555444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.29  E-value=1.4e-10  Score=113.77  Aligned_cols=149  Identities=14%  Similarity=0.165  Sum_probs=106.8

Q ss_pred             hhhhhhhcCCChhhHHHHHHHH-HHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh---hhhhcccHHHHHHHHH
Q 011529          127 ILPMSAEFNWNPATVGLIQSSF-FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVVRV  202 (483)
Q Consensus       127 ~~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~  202 (483)
                      .+.+.+++|+++.+++++.... .++..++.+++|++.||+|+|+.+..+.++..+..+..   .+.+ .+.+.+++..+
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence            3456777999999999998665 45688999999999999999998877776665554333   2332 14555555544


Q ss_pred             ----HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 011529          203 ----FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (483)
Q Consensus       203 ----l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  278 (483)
                          ..|++.+...+....++.+.+|.+    ..++.+...++|..+++.++|.+.+++||+..|.+.++++++..++..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence                445555555666666777666544    446666666778877777899999999999999998888877665554


Q ss_pred             Hh
Q 011529          279 SK  280 (483)
Q Consensus       279 ~~  280 (483)
                      ..
T Consensus       388 ~~  389 (402)
T PRK11902        388 LM  389 (402)
T ss_pred             HH
Confidence            43

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.28  E-value=1.6e-10  Score=113.56  Aligned_cols=161  Identities=13%  Similarity=0.104  Sum_probs=111.4

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhhc--CCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchH-HHHHHHHHHHHHH
Q 011529          108 LCFSAFLLCNMDRVNMSIAILPMSAEF--NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-LGFGVVWWSIATA  184 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~  184 (483)
                      ...+.+++.......+..++|.+.+++  +.+..+.+.+.+...++..++.+++|+++||+++|+. +....++..++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~  325 (412)
T TIGR02332       246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWL  325 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHH
Confidence            334444445555555667788877764  6688889999999999999999999999999997775 3444444444333


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVF  263 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~  263 (483)
                      +.....  +....+++..+.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+..| |++.+
T Consensus       326 ~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~  403 (412)
T TIGR02332       326 LASATD--HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL  403 (412)
T ss_pred             HHHhcC--CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence            222222  222222222233333333334444555678899999999999999999999999999999999875 99988


Q ss_pred             HHHHHHH
Q 011529          264 YSFGSLG  270 (483)
Q Consensus       264 ~~~~~~~  270 (483)
                      ++.+++.
T Consensus       404 ~~~~~~~  410 (412)
T TIGR02332       404 WFVAALL  410 (412)
T ss_pred             HHHHHHH
Confidence            8766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.27  E-value=2.4e-09  Score=103.12  Aligned_cols=282  Identities=13%  Similarity=0.045  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhc-CCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH----
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEF-NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS----  180 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~----  180 (483)
                      ...+...+++...+.-++....+.+..+. .-+---.+...-.-.+..+++++..|.+.||..|.+++..+.+..-    
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            44567788888888888888888855554 4455556666667777888999999999999999888766644422    


Q ss_pred             HHHHHhh--hhhcc-----c--HHHHHHHHHHHhhhhhcchhH-HHHHHhhh----c--CCcchhHHHHHHHHHHHhHHH
Q 011529          181 IATALTP--VAAKL-----G--LPFLLVVRVFMGIGEGVAMPA-MNNILSKW----V--PVAERSRSLALVYSGMYLGSV  244 (483)
Q Consensus       181 ~~~~~~~--~~~~~-----~--~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~----~--~~~~r~~~~~~~~~~~~~g~~  244 (483)
                      +++.++.  +....     +  .+.+++...+.|.-.-....+ ..+.=.||    .  +++.+.+.++...-.-.+.-+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence            2222221  11100     1  112222222222221111111 11111223    2  345667888888888889999


Q ss_pred             HHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhc----cCCCCCCCCCChhh---H--HH----------hhhcccC
Q 011529          245 TGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA----HSSPAEDPQLRPAE---K--KL----------IVSSCAS  305 (483)
Q Consensus       245 ~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~--~~----------~~~~~~~  305 (483)
                      ++|++.|.+.+..+.+....+.++..++..++=+++.    +..|.-+.+.++.+   .  ..          .......
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN  243 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence            9999999999988988888877777776655433221    11111110000000   0  00          0000000


Q ss_pred             CCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011529          306 KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV  385 (483)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g  385 (483)
                      .-.....+|+..+++|.+.......+++. ..-++...+..|+.. .|+++...|.+-+...+.++.|.++.+++.+|+|
T Consensus       244 ~~~~~~~~w~~Y~~q~vflas~alalLY~-TVLsf~~lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  244 PLRTIIRGWRTYFRQPVFLASFALALLYF-TVLSFGGLMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             HHHHHhccHHHHHhCHHHHHHHHHHHHHH-HHhcCcHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            00111345777777777665555444444 455567888889988 5999999999999999999999999999999999


Q ss_pred             hcCC
Q 011529          386 SKGL  389 (483)
Q Consensus       386 ~~~~  389 (483)
                      ..|.
T Consensus       322 lvr~  325 (432)
T PF06963_consen  322 LVRA  325 (432)
T ss_pred             chhh
Confidence            6653

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.26  E-value=5.7e-11  Score=118.81  Aligned_cols=154  Identities=17%  Similarity=0.029  Sum_probs=107.9

Q ss_pred             HHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCc-------hHHHHHHHHHHHHHHHhhhhhcccHH
Q 011529          124 SIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGK-------AVLGFGVVWWSIATALTPVAAKLGLP  195 (483)
Q Consensus       124 ~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (483)
                      ...+|. +.+++|.+..+.+.+.++..++..++.+++|+++||++||       ....+..++.++..++....+  +.+
T Consensus       272 ~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--~~~  349 (476)
T PLN00028        272 DNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--SLG  349 (476)
T ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--hHH
Confidence            334555 4567899999999999999999999999999999999865       223333333333334444444  555


Q ss_pred             HHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 011529          196 FLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT  275 (483)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  275 (483)
                      ..++..++.+++.+...+...+++.+.. +++++...|+.+.+..+|..++|.+.+ ..+..+|+..|++.+++.++..+
T Consensus       350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~  427 (476)
T PLN00028        350 AAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL  427 (476)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence            5555666667666555556666666665 578999999998888788877776654 22234699999998888877766


Q ss_pred             HHHHhc
Q 011529          276 VWLSKA  281 (483)
Q Consensus       276 ~~~~~~  281 (483)
                      +.++.+
T Consensus       428 ~~~~~~  433 (476)
T PLN00028        428 PVAFIH  433 (476)
T ss_pred             HHHhee
Confidence            665554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.26  E-value=2.7e-09  Score=95.01  Aligned_cols=178  Identities=15%  Similarity=0.088  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI  181 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  181 (483)
                      ||..+......... ....+.++.+-|.+++.+|+|..|...+.....++..+ .++.|.+.|++|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~~-~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLC-SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHh-cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34444443333333 33566678888999999999999999999999999986 69999999999999999999999999


Q ss_pred             HHHHhhhhhc-----ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          182 ATALTPVAAK-----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       182 ~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      +..+..++..     .++|.+.+..++.|.+.+....+......+.|| ++||++.|+.-...++++.+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            9887765421     256788888888888877777787777778995 6899999999999999988877776666554


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhccC
Q 011529          257 FGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                       +-...+.+.+....+..+....+.+.
T Consensus       158 -~~~~fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  158 -DPSSFLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHhhheec
Confidence             32333333444333333333333333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.25  E-value=1.3e-10  Score=113.93  Aligned_cols=261  Identities=14%  Similarity=0.095  Sum_probs=168.2

Q ss_pred             HHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-----CCchHHHHHHHHHHHHHHHhhhhhc--ccHHH
Q 011529          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-----GGKAVLGFGVVWWSIATALTPVAAK--LGLPF  196 (483)
Q Consensus       124 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~  196 (483)
                      ....+.+.+++|+++++...+.++..+...+ .++.|.++|-+     .||+-++++.++..++.+.++..+.  .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            3446778999999999999999999888874 89999999976     3555567777777666655555442  14566


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcC--CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVP--VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF  274 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~  274 (483)
                      ..+..++..+|.........+.+.|...  +++++...+.......+|.+++..++|.+.+..+++..|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            6677788889999999999999999874  34478888999999999999999999999999999999998888877776


Q ss_pred             HHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhC
Q 011529          275 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIV-SHFCHNWGTFILLTWMPTYYNQVLH  353 (483)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g  353 (483)
                      +..+...+|++...........++.........++....+++.++++.+|...+ ..++............-.+..+..+
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~  248 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALG  248 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecccc
Confidence            666665554221111100000000000000000011223456677788877666 3332222221111101112223345


Q ss_pred             ---CCcchhhHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011529          354 ---FNLTESGLFCVLPWLTMAFSANLGGWIADTLV  385 (483)
Q Consensus       354 ---~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g  385 (483)
                         +++...+.+..+..++.++|..+..+...+..
T Consensus       249 gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~  283 (433)
T PF03092_consen  249 GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWS  283 (433)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence               78877787776666677777666655544443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=2.3e-10  Score=106.52  Aligned_cols=155  Identities=19%  Similarity=0.157  Sum_probs=129.7

Q ss_pred             hhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q 011529          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (483)
Q Consensus       121 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (483)
                      +.+...-..-..++|++..++.++.....+..+++++++|+|.||+|.|+++..+.++..+.++...+..  .-..+.++
T Consensus       270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~  347 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--GELDFWIL  347 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--ccHHHHHH
Confidence            3333334445569999999999999999999999999999999999999999999999888887776666  55667778


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHHHHH
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~  277 (483)
                      .++.|+..|..+...-++..+.+|+++-++.+|+++..+..+..+||.+.+.+.+..| -|..+....++..+..+..
T Consensus       348 gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         348 GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            8899999999999999999999999999999999999999999999999999988655 5655555555544444333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.23  E-value=3.1e-10  Score=113.55  Aligned_cols=174  Identities=12%  Similarity=0.041  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHH--------HHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVL--------GFG  175 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--------~~~  175 (483)
                      .++.+.+..+........+..++|. +.+.+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  341 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG  341 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            3444455555555556666667777 4567899999999999999999999999999999998654321        111


Q ss_pred             HHHH--HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHh
Q 011529          176 VVWW--SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (483)
Q Consensus       176 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (483)
                      ....  ++..+...... .+.+..++...+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.|.+
T Consensus       342 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       342 IGGLGPGIFAYALPYLS-AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            1111  11111111111 134444445555555555555555556667764 5899999999999999999999999988


Q ss_pred             hhcc---CchHHHHHHHHHHHHHHHHHHHh
Q 011529          254 IHRF---GWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       254 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      .+..   +|+..|.+.++..++..++....
T Consensus       420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            7653   38888888887777766555443

>TIGR00896 CynX cyanate transporter

Probab=99.23  E-value=5.2e-10  Score=107.77  Aligned_cols=137  Identities=15%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             hhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-CCchHHHHHHHHHHHHHHHhhhhhcccHHHH
Q 011529          119 DRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKLGLPFL  197 (483)
Q Consensus       119 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (483)
                      .......++|.+.++.|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.+.+.+.+  +....
T Consensus       212 ~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  289 (355)
T TIGR00896       212 LYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--MHGLW  289 (355)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHH
Confidence            333445567777778899999999999999999999999999999999 566677777777777776666655  32222


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHhhhcC-CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          198 LVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                       ...++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.|.+.++.|
T Consensus       290 -~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       290 -AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             -HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             24567899998888887777766554 4667899999999999999999999999998766

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.23  E-value=6.2e-10  Score=97.49  Aligned_cols=169  Identities=11%  Similarity=0.096  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHH-H
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIA-T  183 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~-~  183 (483)
                      ++.++++.+.+..+.....+  -..+.+.+|+|+...+.+.+.......+..++.|.++||+|++.+.+.+..+..+. -
T Consensus       268 ~~~iicv~yyva~fPFi~lg--~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H  345 (459)
T KOG4686|consen  268 VLVIICVLYYVAWFPFITLG--PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGH  345 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhhh--HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHh
Confidence            44444444444444333333  23478999999999999999988889999999999999999998877665544433 2


Q ss_pred             HHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC---ch
Q 011529          184 ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WP  260 (483)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---~~  260 (483)
                      ....+    +++.-.+...+.|+..+......+..++...|+++.|++.|..+...++|..+.|+++|++.++-|   |-
T Consensus       346 ~~l~F----t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~l  421 (459)
T KOG4686|consen  346 SGLFF----TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNL  421 (459)
T ss_pred             hhHHh----hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhH
Confidence            33333    334445667788888777766678889999999999999999999999999999999999998644   44


Q ss_pred             HHHH-HHHHHHHHHHHHHHH
Q 011529          261 SVFY-SFGSLGTVWFTVWLS  279 (483)
Q Consensus       261 ~~~~-~~~~~~~~~~~~~~~  279 (483)
                      .+|. +.+.+++....+.+.
T Consensus       422 e~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  422 EAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            4444 344444444333333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.22  E-value=2.5e-10  Score=111.67  Aligned_cols=151  Identities=15%  Similarity=0.155  Sum_probs=116.7

Q ss_pred             HHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHh-hcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q 011529          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-TVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRV  202 (483)
Q Consensus       124 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (483)
                      ...+|.+.++.+.++.+.+++.++..++...+..+.+++.| |++.++.+..+.++.+++.+++.+.+  +++.+.+..+
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~  305 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--NLQQLFTLIC  305 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Confidence            34567766666668888999988888777766666677665 46667777778777888777777777  7777777778


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc---Cc-hHHHHHHHHHHHHHHHH
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---GW-PSVFYSFGSLGTVWFTV  276 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~-~~~~~~~~~~~~~~~~~  276 (483)
                      +.+++.+...|...+++.+..|+++|++.+|+.+....+|..+||.++|++.++.   +. ...+++.+++.++..+.
T Consensus       306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            8888888888888999999999999999999999999999999999999999864   32 44555545555544443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.20  E-value=2.2e-08  Score=102.29  Aligned_cols=157  Identities=19%  Similarity=0.241  Sum_probs=127.3

Q ss_pred             HhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh-cCCchHHHHHHHHHHHHHHHhhhhhcc------cHHHH
Q 011529          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATALTPVAAKL------GLPFL  197 (483)
Q Consensus       125 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~l  197 (483)
                      .....+.+.+|.+......+...+.....+..+++|+++|+ +|+++.+.++.++..++.++.++....      .....
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            33445566789999999999999888888999999999996 699999999999999998877664210      12346


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHhhhcCCc---chhHHHHHHHHHHHhHHHHHHhhHHHhhhcc-------CchHHHHHHH
Q 011529          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYSFG  267 (483)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~~~~~~  267 (483)
                      +++..+..+|.|++-+...+...|.++++   +|.+.+.++..+.++|+.+++.+.+++.+..       +|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            67788888999999999999999999754   3678889999999999999999999887443       6999999998


Q ss_pred             HHHHHHHHHHHHhc
Q 011529          268 SLGTVWFTVWLSKA  281 (483)
Q Consensus       268 ~~~~~~~~~~~~~~  281 (483)
                      ++.++..++.....
T Consensus       169 i~m~ia~lvf~~g~  182 (654)
T TIGR00926       169 ILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88888776665443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.20  E-value=8.5e-10  Score=107.51  Aligned_cols=173  Identities=11%  Similarity=0.005  Sum_probs=119.2

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh-h
Q 011529          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP-V  188 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~  188 (483)
                      ++.+++.+.....++..+|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.+...++..... .
T Consensus       258 slly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~  336 (462)
T PRK15034        258 SLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLT  336 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444455566664433 22333333334456778888999999999999999999988887777654322 2


Q ss_pred             hhc---ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC---------------------cchhHHHHHHHHHHHhHHH
Q 011529          189 AAK---LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV---------------------AERSRSLALVYSGMYLGSV  244 (483)
Q Consensus       189 ~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~  244 (483)
                      .+.   .+++.+.+..+...++.|..+.....++.+.+|+                     ++-|.+.|+....+.+|+.
T Consensus       337 lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf  416 (462)
T PRK15034        337 LPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGF  416 (462)
T ss_pred             hccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccc
Confidence            221   1456666666666666677777788888888864                     1568899999999999999


Q ss_pred             HHHhhHHHhhhccC-chHHHHHHHHHHHHHHHHHHHhccC
Q 011529          245 TGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       245 ~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      +-|.+.|...+..| +...|+...+..+++.++.+....+
T Consensus       417 ~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        417 FIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99988777777654 7888888888888777766655444

>PRK09848 glucuronide transporter; Provisional

Probab=99.19  E-value=6.5e-10  Score=110.64  Aligned_cols=144  Identities=17%  Similarity=0.132  Sum_probs=111.4

Q ss_pred             HhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccH
Q 011529          116 CNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL  194 (483)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  194 (483)
                      ............|. +.+.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.+.+.+.+..++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~  319 (448)
T PRK09848        240 VLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSL  319 (448)
T ss_pred             HHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhH
Confidence            33333344444555 34457766655555555556778889999999999999999999999888888777666543356


Q ss_pred             HHHHHHHHHHhhhhhcchhHHHHHHhhhcCCc-------chhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          195 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA-------ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      +.+++..++.|+|.+...+...++..|..+.+       ++|..+|+.+....+|..+|+.+.+.+.+..|+
T Consensus       320 ~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        320 PVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77777788899999999999999999988654       358999999999999999999999998876665

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.16  E-value=1.8e-09  Score=105.57  Aligned_cols=137  Identities=11%  Similarity=0.057  Sum_probs=95.4

Q ss_pred             hhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Q 011529          127 ILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMG  205 (483)
Q Consensus       127 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (483)
                      .|. +.+++|.++.+.+.+.+...++..++.++.+++.||+|+|+.+.++.++..++.++..+.+  +.+..+....+.+
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~  303 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLIC  303 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            344 5567899999999999999999999999999999999999999999888888887777665  4444444444444


Q ss_pred             hhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHH
Q 011529          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG  270 (483)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  270 (483)
                      .+.+...+..  ...+..|.++|+   +.......++..+|+.+++++.+..|+.....+.+.+.
T Consensus       304 ~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        304 AGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            4433333332  333444544443   44445566777788888888888788766555555434

>PRK10133 L-fucose transporter; Provisional

Probab=99.14  E-value=2.4e-09  Score=105.81  Aligned_cols=141  Identities=10%  Similarity=0.034  Sum_probs=113.5

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhc
Q 011529          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (483)
Q Consensus       131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (483)
                      .+.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.+  +. ..+....+.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GH-VGLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--Ch-HHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999888877776666655555  43 234567789999999


Q ss_pred             chhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHHHH
Q 011529          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTV  276 (483)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~  276 (483)
                      .+|...+...+..++ +.+.+.++..+ ..+|..++|.+.|.+.+..| -+..|++..+..+.....
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            999999999998854 56777887764 55788889999999999887 788887665555554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.13  E-value=1.5e-09  Score=121.09  Aligned_cols=147  Identities=15%  Similarity=0.182  Sum_probs=122.5

Q ss_pred             hHHhhhh-hhhhcCCChh-hHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q 011529          123 MSIAILP-MSAEFNWNPA-TVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (483)
Q Consensus       123 ~~~~~~~-~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (483)
                      ....+|. +.+.+|.+.. +.+++.+...++.+++.++.|++.||+++++++.++.++.+++.+++.+..  +.+.+++.
T Consensus       251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  328 (1146)
T PRK08633        251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVL  328 (1146)
T ss_pred             HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHH
Confidence            3344444 5677899998 999999999999999999999999999999999888888888888777777  78888888


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc-cCchHHHHHHHHHHH
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGT  271 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~  271 (483)
                      .++.|++.+...+...+++.+..|++.|++++|+.+....+|.++++.+++.+... +++...+++.+.+.+
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            99999999988889999999999999999999999999999998888887766542 345555655554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.13  E-value=1.1e-09  Score=110.21  Aligned_cols=136  Identities=13%  Similarity=0.171  Sum_probs=114.4

Q ss_pred             hhhHHhhhhh-hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh--hhcccHHHH
Q 011529          121 VNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFL  197 (483)
Q Consensus       121 ~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~l  197 (483)
                      ......+|.+ .+.+|.++.+.++......++..++.++.|++.||+|||+++.++.++.+++..+..+  .+..+.+.+
T Consensus       272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  351 (485)
T TIGR00711       272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAI  351 (485)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence            3344456664 4558999999999999999999999999999999999999999998888888776652  222256677


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          198 LVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      ....++.|++.+...+.......+..|+++++++.|+.+....+|..+|+.+.+.+.++
T Consensus       352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788999999888877788888889999999999999999999999999999988775

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.13  E-value=4.1e-09  Score=102.89  Aligned_cols=147  Identities=17%  Similarity=0.101  Sum_probs=114.9

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhh
Q 011529          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEG  209 (483)
Q Consensus       130 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  209 (483)
                      +.+.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+.+ .++..+...+.+  +++..++..++.|++.+
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--SLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--HHHHHHHHHHHHHHhhh
Confidence            556689999999999999999999999999999999999988877753 344444445555  67777778889999988


Q ss_pred             cchhHHHHHHhhhcCCcc-hhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          210 VAMPAMNNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      ...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ +..|-+..+.+.++..++.+.+.+.+
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888765554 79999999999999999999998865 56777776666555555544444333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.12  E-value=2.8e-07  Score=90.13  Aligned_cols=273  Identities=10%  Similarity=0.031  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCC-----ChhhHHHHHHHHHHHHHHH-HhhHHHHHhhcCCchHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNW-----NPATVGLIQSSFFWGYLLT-QIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      +....+..|+..+..+.    +-.+.+.+.+     +...+.++-+...+...+. .++.+++++|++|++++-+....+
T Consensus         9 ~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F   84 (472)
T TIGR00769         9 FLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF   84 (472)
T ss_pred             HHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence            44444444444444333    3345555544     4467889988887877766 899999999999999987766666


Q ss_pred             HHHHHHhhhh--hc--c-------------------------cHHHHHHHHHHHhhhhhcchh-HHHHHHhhhcCCcchh
Q 011529          180 SIATALTPVA--AK--L-------------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPVAERS  229 (483)
Q Consensus       180 ~~~~~~~~~~--~~--~-------------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~  229 (483)
                      ....+++++.  +.  .                         +.|...+..+...+....... ..+.+..|.+..+|-.
T Consensus        85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak  164 (472)
T TIGR00769        85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK  164 (472)
T ss_pred             HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            6665555443  10  0                         123333444445554445554 7789999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHhhHHHhhh-------cc-Cch----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHH
Q 011529          230 RSLALVYSGMYLGSVTGLAFSPFLIH-------RF-GWP----SVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK  297 (483)
Q Consensus       230 ~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~-g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (483)
                      |.+++...+.++|.++++.+..++.+       .. .|.    ..+.+.++..++...+.....+.. ..++.....++ 
T Consensus       165 Rfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-  242 (472)
T TIGR00769       165 RFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV-LTDPRSYNPAL-  242 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccccchhh-
Confidence            99999999999999999999888763       11 232    233333333333333333332222 11111000000 


Q ss_pred             HhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcch----hhHHhHHHHHHHHHH
Q 011529          298 LIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTMAFS  373 (483)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~i~  373 (483)
                        .+++++.+.....+++.++++|-++.+.+...++....+.+....-...++.+- ++.+    .|.+....++..++.
T Consensus       243 --~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~tl~~  319 (472)
T TIGR00769       243 --KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVSVTM  319 (472)
T ss_pred             --ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence              001111111223567788999999998888888888887777666666666442 3322    234444556666666


Q ss_pred             HHHHHHHHHHHhhc
Q 011529          374 ANLGGWIADTLVSK  387 (483)
Q Consensus       374 ~~~~g~l~dr~g~~  387 (483)
                      .++.+++.+|+|.+
T Consensus       320 ~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       320 MLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHhhHH
Confidence            77779999999866

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.11  E-value=3.3e-09  Score=103.37  Aligned_cols=139  Identities=15%  Similarity=0.255  Sum_probs=102.7

Q ss_pred             hHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc---ccHHHHH
Q 011529          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK---LGLPFLL  198 (483)
Q Consensus       123 ~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~  198 (483)
                      .....|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+++.+...   .+.+.++
T Consensus       225 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (385)
T TIGR00710       225 FFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMII  304 (385)
T ss_pred             HHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3444555 45678999999999999999999999999999999999999988887777776665544321   1344556


Q ss_pred             HHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHh-HHHHHHhhHHHhhhccCchHHH
Q 011529          199 VVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVF  263 (483)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~~~~  263 (483)
                      +..++.|++.+...+.......|..| ++++++.++.+..... |.+.++. .+.+.+..+|...+
T Consensus       305 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~  368 (385)
T TIGR00710       305 GPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHH
Confidence            66778889888888888888888875 6899999998877765 4555554 44444434444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.10  E-value=1.8e-09  Score=120.17  Aligned_cols=150  Identities=12%  Similarity=0.047  Sum_probs=119.4

Q ss_pred             hhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh----------
Q 011529          121 VNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA----------  189 (483)
Q Consensus       121 ~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------  189 (483)
                      ..+...+|. +.+.+|.++.+.|++.+...++.+++.++.|++.|+.++++.+..+.++.+++.+.+.+.          
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ  321 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence            334445566 455689999999999999999999999999999998887776666665555554433332          


Q ss_pred             ----------hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-ccC
Q 011529          190 ----------AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFG  258 (483)
Q Consensus       190 ----------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g  258 (483)
                                .  +.+.+++..++.|++.+...+...+++.+.+|++.||+++|..++...+|..+++++.+.+.+ ..+
T Consensus       322 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~  399 (1140)
T PRK06814        322 LKSILVFLSKR--HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFS  399 (1140)
T ss_pred             ccchhhhhccc--ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                      3  667788888999999999999999999999999999999999999999999999999998874 456


Q ss_pred             chHHHHHHHHHHHH
Q 011529          259 WPSVFYSFGSLGTV  272 (483)
Q Consensus       259 ~~~~~~~~~~~~~~  272 (483)
                      +...+++.+++.++
T Consensus       400 ~~~~~~~~~~~~~~  413 (1140)
T PRK06814        400 IPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655554433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.10  E-value=4.8e-09  Score=101.08  Aligned_cols=162  Identities=11%  Similarity=-0.038  Sum_probs=111.0

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCC---chHHH-HHHHHHHHHHH
Q 011529          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG---KAVLG-FGVVWWSIATA  184 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~---r~~~~-~~~~~~~~~~~  184 (483)
                      +.+..++.......+..++|.+.++.|.+.. .+...++..+...++   .++++||..|   |+... ...++.++...
T Consensus       197 ~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~  272 (368)
T TIGR00903       197 IGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL  272 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3344444445555566778887788888764 566665655555555   4677777654   33333 23444444444


Q ss_pred             HhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHH
Q 011529          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  264 (483)
                      ...+..  +.+..++...+.+++.....+...++.+|.+|++.|+++.|+.+....+|..++|.+.+.+..  +.+..|.
T Consensus       273 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~  348 (368)
T TIGR00903       273 ALAFEL--NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT  348 (368)
T ss_pred             HHHHcc--ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence            444444  444445556667777777778888999999999999999999999999999999999887773  6677788


Q ss_pred             HHHHHHHHHHHHHH
Q 011529          265 SFGSLGTVWFTVWL  278 (483)
Q Consensus       265 ~~~~~~~~~~~~~~  278 (483)
                      +.++..++..+..+
T Consensus       349 ~~~~~~~i~~~~~~  362 (368)
T TIGR00903       349 FLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777777666554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.10  E-value=4.7e-09  Score=105.10  Aligned_cols=150  Identities=11%  Similarity=0.024  Sum_probs=112.6

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh-
Q 011529          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV-  188 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-  188 (483)
                      ....++............+.+.+....+....+++.++..++.+++.++++++.||+|+|+.+.++.++..++.+...+ 
T Consensus       237 l~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~  316 (473)
T PRK10429        237 LGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLM  316 (473)
T ss_pred             HHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444455555555655555446677788888888899999999999999999999998888776655544432 


Q ss_pred             --hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcC-------CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          189 --AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       189 --~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                        ....+.+.+++..++.|++.+...+...++++|..+       .++.|..+|......-+|..+++.+.|++.+..|+
T Consensus       317 ~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        317 GLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence              122256777777888999999999999999999865       33346689999999999999999999999876665

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.10  E-value=1.9e-09  Score=108.61  Aligned_cols=134  Identities=13%  Similarity=0.120  Sum_probs=113.4

Q ss_pred             hhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh-cccHHHHHH
Q 011529          122 NMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-KLGLPFLLV  199 (483)
Q Consensus       122 ~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  199 (483)
                      .....+|. +++.+|.++.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.+++.+.. ..+.+...+
T Consensus       277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  356 (495)
T PRK14995        277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWG  356 (495)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            34445565 5566899999999999999999999999999999999999999888888877766554322 125566677


Q ss_pred             HHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh
Q 011529          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (483)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (483)
                      ..++.|++.+...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999888888889999999999999999999999999999999998875

>PRK11043 putative transporter; Provisional

Probab=99.09  E-value=8.4e-09  Score=101.17  Aligned_cols=138  Identities=14%  Similarity=0.117  Sum_probs=104.3

Q ss_pred             HHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh---hhhhcccHHHHHHH
Q 011529          124 SIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAKLGLPFLLVV  200 (483)
Q Consensus       124 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~  200 (483)
                      ....|.+.+++|.++.+.|+......++..++.++.+++.||+++|+.+....+..+++.+.+   ......+.+.+++.
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            344677777889999999998888889999999999999999999987655555444443322   22111145556666


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHH
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  262 (483)
                      ..+.|++.+..++...+...+..| ++++++.|+.+.....+...++.+.+.+.+.......
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  363 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTG  363 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHH
Confidence            778888888888888888777774 6899999999999888999999999888775444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.08  E-value=1.2e-09  Score=105.01  Aligned_cols=131  Identities=18%  Similarity=0.257  Sum_probs=109.4

Q ss_pred             hhhhhhhHHhhhhh-hhhcCCC-hhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcc-c
Q 011529          117 NMDRVNMSIAILPM-SAEFNWN-PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL-G  193 (483)
Q Consensus       117 ~~~~~~~~~~~~~~-~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~  193 (483)
                      ..........+|.+ .+++|.+ ..+.+.+.++..+...++.++.|++.||+++|+..........+..+...+.... +
T Consensus       219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (352)
T PF07690_consen  219 FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSS  298 (352)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCH
T ss_pred             HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33444466667774 8889999 8999999999999999999999999999999888777777766666655544321 4


Q ss_pred             HHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHH
Q 011529          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (483)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  247 (483)
                      ....++..++.|++.+...+...+++.+.+|+++|+++.|+.+...++|..+||
T Consensus       299 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  299 PVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            566777888899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.07  E-value=3.2e-09  Score=105.48  Aligned_cols=135  Identities=12%  Similarity=0.093  Sum_probs=101.1

Q ss_pred             HhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q 011529          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFM  204 (483)
Q Consensus       125 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (483)
                      ...+++.++.-.++...+.+.....+...++.++++++.||+|+|+.+..+.++.++..+...+.+..+.+.+++..++.
T Consensus       250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  329 (444)
T PRK09669        250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILF  329 (444)
T ss_pred             hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            33344444332234445556667778888899999999999999999988877666544333333222677778888899


Q ss_pred             hhhhhcchhHHHHHHhhhcCC-------cchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          205 GIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      |++.+...+...++++|..+.       ++.|..+|..+....+|..+|+.++|.+.+..|+
T Consensus       330 g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        330 NFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999998852       2346778999999999999999999999887766

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.07  E-value=1.5e-08  Score=92.65  Aligned_cols=167  Identities=13%  Similarity=0.073  Sum_probs=135.0

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-CCchHHHHHHHHHHHHHHHhhhhhc
Q 011529          113 FLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAK  191 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~  191 (483)
                      .-++....+....++|.+..|.|+|..+.|.+.+...+......+....+++|. .+|+..+...+++.++.+.+.+.+.
T Consensus       217 mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~  296 (395)
T COG2807         217 MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG  296 (395)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence            334555566677789999999999999999999999999999999999999975 5677777788888888888877763


Q ss_pred             ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC-cchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHHHHHHHH
Q 011529          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSL  269 (483)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~  269 (483)
                      .+++   ...++.|+|.|..++.....+.+..++ ++-++..|+.+..+.+=..+||.+.|++.|..| |+......+..
T Consensus       297 ~~~~---lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         297 QLPI---LWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             hHHH---HHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            2222   225899999999999999999888764 566788888899999999999999999999765 99888887777


Q ss_pred             HHHHHHHHHHhcc
Q 011529          270 GTVWFTVWLSKAH  282 (483)
Q Consensus       270 ~~~~~~~~~~~~~  282 (483)
                      .++..+.-+..-+
T Consensus       374 ~i~m~i~Gl~a~r  386 (395)
T COG2807         374 TLLMLIFGLRAGR  386 (395)
T ss_pred             HHHHHHHHhhcch
Confidence            7776666555433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=104.12  Aligned_cols=165  Identities=16%  Similarity=0.140  Sum_probs=143.3

Q ss_pred             HHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhccc
Q 011529          114 LLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLG  193 (483)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  193 (483)
                      ++.+........++-...++.+..+...|........+-++.-++.+++.+|+|+-+++..++.+..+=.+......  |
T Consensus       381 v~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--n  458 (618)
T KOG3762|consen  381 VVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--N  458 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--C
Confidence            33444444455555557788888888889888888899999999999999999999999999999999888888888  9


Q ss_pred             HHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHH-HHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHH
Q 011529          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (483)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  272 (483)
                      .|..+..-+++|+..+..+.+..+|+++..||+-|..+.++.+ ...++|-.+|.+++|.+.+.++-+..|.+.++.+++
T Consensus       459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV  538 (618)
T ss_pred             chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999965 556799999999999999999999999999988887


Q ss_pred             HHHHHHHh
Q 011529          273 WFTVWLSK  280 (483)
Q Consensus       273 ~~~~~~~~  280 (483)
                      .+++....
T Consensus       539 ~l~~~~~i  546 (618)
T KOG3762|consen  539 TLALFISI  546 (618)
T ss_pred             HHHHHHHh
Confidence            76665543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.06  E-value=6.1e-09  Score=102.97  Aligned_cols=154  Identities=15%  Similarity=0.113  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (483)
                      +..+.+..++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~  306 (428)
T PF13347_consen  227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL  306 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence            33444555555666666666666655553334467888888999999999999999999999999999999999999888


Q ss_pred             hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC-------cchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ..+.+..+.+.+++..++.|++.+..+....++++|..+.       ++.|..+|..+....+|..+++.+.+.+.+..|
T Consensus       307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            8777534889999999999999999999999999998863       345899999999999999999999998887655


Q ss_pred             c
Q 011529          259 W  259 (483)
Q Consensus       259 ~  259 (483)
                      +
T Consensus       387 y  387 (428)
T PF13347_consen  387 Y  387 (428)
T ss_pred             c
Confidence            4

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.7e-08  Score=94.77  Aligned_cols=271  Identities=14%  Similarity=0.080  Sum_probs=163.5

Q ss_pred             hhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh----cCCchHHH-HHHHHHHHHHHHhhhhhc
Q 011529          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLG-FGVVWWSIATALTPVAAK  191 (483)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~-~~~~~~~~~~~~~~~~~~  191 (483)
                      .+....-..+.+++.++.|++....+.+..+.-+...+.+|+.|..+||    +||||.++ .+.+...++.++..++..
T Consensus        45 qf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaD  124 (498)
T KOG0637|consen   45 QFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAAD  124 (498)
T ss_pred             HHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhh
Confidence            3344444456777888999999999999999999999999999999995    78887755 455566666666665541


Q ss_pred             c---------------cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhH-HHHHHHHHHHhHHHHHHhhHHHhhh
Q 011529          192 L---------------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSR-SLALVYSGMYLGSVTGLAFSPFLIH  255 (483)
Q Consensus       192 ~---------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~~~~~l~~  255 (483)
                      .               ....+++..-+.-++.......+-+++.|+..++++.+ +++++..+..+|+.+|..++++.  
T Consensus       125 ig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~--  202 (498)
T KOG0637|consen  125 IGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL--  202 (498)
T ss_pred             hhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc--
Confidence            1               12334455556666777888899999999998777777 99999999999999999888733  


Q ss_pred             ccCch--HHHHHHHHHHHHHHHHH-------HHhccCC------CCCCCCCChhhHHHhhhcccCCCCCcccchhhh-hc
Q 011529          256 RFGWP--SVFYSFGSLGTVWFTVW-------LSKAHSS------PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLI-LS  319 (483)
Q Consensus       256 ~~g~~--~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  319 (483)
                        +|+  ..|.....+.+.+..+-       -+....+      +++++...+.   ...+....+.+.-...+..+ ..
T Consensus       203 --~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~---~~~~~~~~~~~~~~e~fG~~~~m  277 (498)
T KOG0637|consen  203 --GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG---TTARSKSSKLPFLLEIFGALKVM  277 (498)
T ss_pred             --CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc---ccccccccCcchHHHHhchHhhC
Confidence              332  12222111111111100       0000000      0010000000   00000000000000011112 23


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hCCCcch----------------hhHHhHHHHHHHHHHHHHHHHHHH
Q 011529          320 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQV-LHFNLTE----------------SGLFCVLPWLTMAFSANLGGWIAD  382 (483)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~----------------~~~~~~~~~~~~~i~~~~~g~l~d  382 (483)
                      .+..|.+++...+...+...+..+...++-+. ++-++..                -.+-..++.+...+.++...++.+
T Consensus       278 pr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~  357 (498)
T KOG0637|consen  278 PRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSR  357 (498)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            56688888888888888888877777666543 3333221                123445566677778888999999


Q ss_pred             HHhhcCCchhHH
Q 011529          383 TLVSKGLSVTTV  394 (483)
Q Consensus       383 r~g~~~~~~~~~  394 (483)
                      |+|.|+.+..+.
T Consensus       358 ~~g~r~~y~~~~  369 (498)
T KOG0637|consen  358 KFGTRKRYWGGV  369 (498)
T ss_pred             hcCcceEEeehh
Confidence            999666555544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=1.5e-08  Score=98.49  Aligned_cols=128  Identities=16%  Similarity=0.060  Sum_probs=89.0

Q ss_pred             hHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh--hcccHHHHHH
Q 011529          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA--AKLGLPFLLV  199 (483)
Q Consensus       123 ~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  199 (483)
                      +....|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..+..+.....  ...+.+...+
T Consensus       213 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (377)
T PRK11102        213 FLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVV  292 (377)
T ss_pred             HHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3334444 566789999999999999999999999999999999999999888876654433222211  1114455555


Q ss_pred             HHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHH-HHhHHHHHHhhHH
Q 011529          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSP  251 (483)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~  251 (483)
                      ...+.+.+.+.........+.|..| ++++++.++.+.. ..+|..+++.+++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        293 GVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5545555555555666667777764 8899999986654 4567777776654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.03  E-value=5.1e-09  Score=100.89  Aligned_cols=123  Identities=15%  Similarity=0.096  Sum_probs=98.6

Q ss_pred             hhhhhhHHhhhhhhhhcCCChhhHHHHHHHHH-HHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhh-hc----
Q 011529          118 MDRVNMSIAILPMSAEFNWNPATVGLIQSSFF-WGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVA-AK----  191 (483)
Q Consensus       118 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~----  191 (483)
                      ..........|.+.+++|.+..+.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+. ..    
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            33334445566666669999999998887765 6778999999999999999999888888877776655443 10    


Q ss_pred             ----ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHH
Q 011529          192 ----LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMY  240 (483)
Q Consensus       192 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  240 (483)
                          .+.+.+..+.++.+++.+...+...+++.|.+|+++|++.+|+.+...+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                1457777888899999999999999999999999999999999887654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1.8e-08  Score=87.64  Aligned_cols=316  Identities=14%  Similarity=0.104  Sum_probs=174.6

Q ss_pred             hhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHH
Q 011529          117 NMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (483)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (483)
                      ..+...-+|.+-.+.+.+|....++|.+..+......+...+.|.++||-|||+.-+.-++.+.++++. -.++  .+-.
T Consensus        50 mAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSp--qYkV  126 (454)
T KOG4332|consen   50 MAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSP--QYKV  126 (454)
T ss_pred             HhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCC--ceEE
Confidence            344455667777788899999999999999888889999999999999999999876666666555543 3455  7888


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHH-hhhcCCcchhHHHHHHH--------HHHHhHHHHHHhhHHHhhhccC--chHHHHH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNIL-SKWVPVAERSRSLALVY--------SGMYLGSVTGLAFSPFLIHRFG--WPSVFYS  265 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~--------~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~  265 (483)
                      ++++|++.|+..+..+.+..++. .|..  ++|+.-.-+..        .+..+-.+++.+.+..+.+.++  .-.+|-.
T Consensus       127 LmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdA  204 (454)
T KOG4332|consen  127 LMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDA  204 (454)
T ss_pred             EeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHH
Confidence            99999999999999998888764 4443  33332222211        2333444455555555666543  4455555


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHH-Hhh
Q 011529          266 FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWM  344 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  344 (483)
                      .+.+..+...+.+.-..+.-.+..+. ++-....           +...+.+..++++..+..+..++-...+.+. .|.
T Consensus       205 AacfLaigmAvil~~W~ENygdps~~-kdlltqf-----------~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWT  272 (454)
T KOG4332|consen  205 AACFLAIGMAVILSSWSENYGDPSEN-KDLLTQF-----------KGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWT  272 (454)
T ss_pred             HHHHHHHHHHHHHhhhhhccCChhhh-HHHHHHh-----------hHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeec
Confidence            44444444433333222221111111 1100000           1123345667776665555555444444433 344


Q ss_pred             HHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhc-----cchh
Q 011529          345 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-----VDSP  419 (483)
Q Consensus       345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  419 (483)
                      |..--+.   ...--|.+++.+.++.++|+-+..++..|-..|--.   .  ..+........+.+.....     ...+
T Consensus       273 PaLspn~---e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~---y--mqivf~vs~a~l~Lpilt~~vsP~kes~  344 (454)
T KOG4332|consen  273 PALSPND---EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVES---Y--MQIVFLVSIAALLLPILTSSVSPSKESP  344 (454)
T ss_pred             ccCCCCc---ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccch---H--HHHHHHHHHHHHHHHHHHhccCCCcCCc
Confidence            4332111   122347888888888888887777776654333111   1  1111111112222211111     1223


Q ss_pred             HHHHHHHHHhhhhhhhhhchhhhhHhhhccC-cceeeee
Q 011529          420 AMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSVSIIS  457 (483)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g  457 (483)
                      ...++.++..-.+.+...|.+.-.-.+..|+ +|.+.+.
T Consensus       345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimN  383 (454)
T KOG4332|consen  345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMN  383 (454)
T ss_pred             hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhh
Confidence            3334444444455556666666665565554 4555543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.96  E-value=1.7e-07  Score=85.87  Aligned_cols=264  Identities=10%  Similarity=-0.065  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHh-----hcCCchHHH-HHH
Q 011529          103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLG-FGV  176 (483)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~-~~~  176 (483)
                      ...+..+.+.+.+++...+... .+|.+.+.-|.|.++.+....++. .. ..-++|.++.|     |+||||..+ -+.
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-PF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-HH-HHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            3346666777888999888888 899999988999988887654443 22 34788999999     999988633 233


Q ss_pred             HHHHHHHHHhhhhhc---------ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHH
Q 011529          177 VWWSIATALTPVAAK---------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (483)
Q Consensus       177 ~~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  247 (483)
                      .+.+..+..++...+         ++...+....++.-+..+....+...+.-.+..+++.|-+......+..+|.+++.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            333333333322110         12333333456667777778888899998999899988888777777777777775


Q ss_pred             hhHHHhhh-------ccCc---------hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcc
Q 011529          248 AFSPFLIH-------RFGW---------PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKT  311 (483)
Q Consensus       248 ~~~~~l~~-------~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (483)
                      .+--.+..       ..+|         ...+++.+.+.+++..+..+..++++.+..++.+....+           ..
T Consensus       187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~-----------~y  255 (510)
T KOG3574|consen  187 VVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHE-----------SY  255 (510)
T ss_pred             ceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHH-----------HH
Confidence            54322221       0112         233455566666666665555554433311111100000           01


Q ss_pred             cchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHH
Q 011529          312 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIA  381 (483)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~  381 (483)
                      .-++++++-|.+..+.......-.++.+-....+.-+.| .|.+..+-+++.....-..++.....|++.
T Consensus       256 k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~t  324 (510)
T KOG3574|consen  256 KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWT  324 (510)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeec
Confidence            135567788888888888888888888888888888888 799999888776444444444444444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.93  E-value=2e-08  Score=98.54  Aligned_cols=178  Identities=9%  Similarity=0.053  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCC---------chHHH
Q 011529          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG---------KAVLG  173 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~---------r~~~~  173 (483)
                      ..++.+.+..+........+...+|. +.+.+|.+..+.|++.++..+...+..+++|.++||.-+         |..-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            35667777788888888888888888 566799999999999999999999999999999998755         22234


Q ss_pred             HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhh-hcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHH
Q 011529          174 FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGE-GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (483)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (483)
                      ++....+++.+.+++.+..+.+..+++ +..+.+. |...+....-..|. .++.-+..+|+.+....+..+++|.+.+.
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVIL-LTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHH-HHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            555566666666666653222122222 2222222 33333333333333 37888999999999999999999999999


Q ss_pred             hhhc---cCchHHHHHHHHHHHHHHHHHHHhccC
Q 011529          253 LIHR---FGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       253 l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      +.+.   ..|+..|++.+++.++..+...++-..
T Consensus       416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~  449 (466)
T KOG2532|consen  416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSG  449 (466)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHhchheeEeecC
Confidence            9842   369999999999988887666655433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.92  E-value=4.7e-08  Score=94.23  Aligned_cols=153  Identities=14%  Similarity=0.084  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhh-hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL  185 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  185 (483)
                      ...++..++........+....++ .-.+|.+..+..+.......+.+++.+++.++.+|+|+|+++.++.++.+++.++
T Consensus       239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~  318 (467)
T COG2211         239 LLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLL  318 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            333445555555666666666664 3446777777888888888888888999999999999999999999999999999


Q ss_pred             hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC-------cchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-------AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ..+.+..+.+.+++..++.+++.+...+...++++|..+-       +.-|...+......-+|..++..+.|++++..|
T Consensus       319 ~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         319 LYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8888765788888999999999999999999999988753       334788888999999999999999999887666


Q ss_pred             c
Q 011529          259 W  259 (483)
Q Consensus       259 ~  259 (483)
                      +
T Consensus       399 y  399 (467)
T COG2211         399 Y  399 (467)
T ss_pred             C
Confidence            4

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.91  E-value=1e-07  Score=95.28  Aligned_cols=175  Identities=14%  Similarity=0.105  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhh-hhcCCCh----hhHHHHHHHHHHHHHHHHhhHHH----HHhh-cCCchHH--HH
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMS-AEFNWNP----ATVGLIQSSFFWGYLLTQIAGGI----WADT-VGGKAVL--GF  174 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~----~~~g~~~~~~~~~~~~~~~~~g~----l~dr-~g~r~~~--~~  174 (483)
                      ..+++..++.+.........++... ++.+.+.    -..+++.++..+...+.+++..+    +.|| .+.+...  .+
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~  354 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL  354 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            3334444343444444444445433 3233322    22678888888888888888665    4443 2233333  67


Q ss_pred             HHHHHHHHHHHhhhh-------hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHH
Q 011529          175 GVVWWSIATALTPVA-------AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL  247 (483)
Q Consensus       175 ~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  247 (483)
                      |.++.+++.+...+.       ...+++++++..++.++|.....|...+++.+..|++.|++.+|++.....+|..+++
T Consensus       355 G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~  434 (475)
T TIGR00924       355 GMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGG  434 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877766541       0128899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhc
Q 011529          248 AFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       248 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      .+........+|...|...++..++..++.++..
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       435 YLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9988877777888888888877777666655543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.90  E-value=8.2e-08  Score=94.09  Aligned_cols=145  Identities=12%  Similarity=0.009  Sum_probs=106.2

Q ss_pred             hHHhhhhhhhhc--CCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q 011529          123 MSIAILPMSAEF--NWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV  200 (483)
Q Consensus       123 ~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (483)
                      ....++.+.++.  +.+....+...+.+.....++.++.+++.||+++|+++.++.++..+..++..+.+  +.. .+..
T Consensus       251 ~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--~~~-~~~~  327 (410)
T TIGR00885       251 CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--GHV-GLYC  327 (410)
T ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--ChH-HHHH
Confidence            334455554443  44445556667777788899999999999999999999888888888888777766  543 3566


Q ss_pred             HHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc------CchHHHHHHHHHHHH
Q 011529          201 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF------GWPSVFYSFGSLGTV  272 (483)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~~~~~~~~~~~~~~  272 (483)
                      .++.|++.+..+|...+...+..+++.+....++..  ..+|..++|.+.|.+.|..      +.+..|++..+..+.
T Consensus       328 l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       328 LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            778888889999999999999996555433333333  3399999999999999954      477777765444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.87  E-value=1.1e-11  Score=123.57  Aligned_cols=164  Identities=13%  Similarity=0.046  Sum_probs=110.8

Q ss_pred             hhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh----hhhccc---
Q 011529          121 VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP----VAAKLG---  193 (483)
Q Consensus       121 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~----~~~~~~---  193 (483)
                      .......+.+.+..+.+..  -.......+...++.++...+.||+|||++++.+.++.+++.+.+.    .....+   
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344456677777787776  2222234455556777778999999999999999888887776664    111110   


Q ss_pred             HHHHHHHHHHHhhhhh-cchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHH
Q 011529          194 LPFLLVVRVFMGIGEG-VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (483)
Q Consensus       194 ~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  272 (483)
                      -...++.-.+..++.+ ...+....+..|.+|.+.|+++.++......++..+++.+...+.+..+-...+.+.+.++++
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            1112222222222222 344666788899999999999999999999999999999888888776634566666667777


Q ss_pred             HHHHHHHhccCCCC
Q 011529          273 WFTVWLSKAHSSPA  286 (483)
Q Consensus       273 ~~~~~~~~~~~~~~  286 (483)
                      ..+..+++.||++.
T Consensus       428 ~~i~~~~~lpET~g  441 (451)
T PF00083_consen  428 AIIFVYFFLPETKG  441 (451)
T ss_pred             HHhheeEEEeeCCC
Confidence            77777777777643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.86  E-value=1.3e-07  Score=94.21  Aligned_cols=133  Identities=12%  Similarity=0.059  Sum_probs=90.8

Q ss_pred             hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhh
Q 011529          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGI  206 (483)
Q Consensus       127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  206 (483)
                      ..++.+...-++...+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+..+.+.+++..++.|+
T Consensus       251 ~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  330 (460)
T PRK11462        251 MMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGV  330 (460)
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence            33333333334455667778888899999999999999999999877555544443333333332133344555566788


Q ss_pred             hhhcchhHHHHHHhhhcC-------CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          207 GEGVAMPAMNNILSKWVP-------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      +.+...+...++++|..+       .++.|..++.......+|..+++.++|.+++..|+
T Consensus       331 ~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        331 LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777777777778887765       23335666778889999999999999988876555

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.84  E-value=2.1e-07  Score=90.98  Aligned_cols=132  Identities=14%  Similarity=-0.002  Sum_probs=97.0

Q ss_pred             hhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHH-HHHHHHHHHhhhhhcccHHHHHHHHHHH
Q 011529          127 ILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGV-VWWSIATALTPVAAKLGLPFLLVVRVFM  204 (483)
Q Consensus       127 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (483)
                      .+. +.+.+|.++.+.+++.....++..++.++.+++.||++++....... ++..+...........+.+.+.+..++.
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (394)
T PRK11652        230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALF  309 (394)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            344 44558999999999999999999999999999999998433222122 1121221222221111556677788899


Q ss_pred             hhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      |++.+...+...++..+.+| ++++...++.+....+|..+++.+++.+.+...+
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~  363 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQF  363 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence            99999999999999999885 6789999999999999999999999887765333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.4e-07  Score=87.67  Aligned_cols=162  Identities=14%  Similarity=0.185  Sum_probs=129.9

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 011529          108 LCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (483)
                      .-.++.|+..........+++.+.++ .|.+..+.....+.+..+..++.++..++..|+...|.+.+..++..+.++..
T Consensus       240 ~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~  319 (422)
T COG0738         240 LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV  319 (422)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566666677776655 88899999999999999999999999999999999999998888888888887


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                      .+.+  +. .-+...++.|++.+..+|...+...+..|  +.....|..-.+..+|+.+-|.+.|++.|+.|-...+...
T Consensus       320 ~l~~--g~-v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~  394 (422)
T COG0738         320 ALIG--GV-VALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIV  394 (422)
T ss_pred             HHhc--Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHH
Confidence            8887  64 44556678899999999999999999997  4455666777788899999999999999999988777755


Q ss_pred             HHHHHHHH
Q 011529          267 GSLGTVWF  274 (483)
Q Consensus       267 ~~~~~~~~  274 (483)
                      ..++.+..
T Consensus       395 pllc~lyV  402 (422)
T COG0738         395 PLLCYLYV  402 (422)
T ss_pred             HHHHHHHH
Confidence            55555444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.81  E-value=2.9e-07  Score=86.27  Aligned_cols=160  Identities=29%  Similarity=0.530  Sum_probs=125.7

Q ss_pred             HHHHhhhhhhhHHhhhhhhhhcCCCh--hhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh
Q 011529          113 FLLCNMDRVNMSIAILPMSAEFNWNP--ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA  190 (483)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  190 (483)
                      .+....+........+.+..+++.+.  ...++..+.+.+...++.++.|.+.||+|||+.+..+.....++.+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~   90 (338)
T COG0477          11 ALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP   90 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence            33334556666677777777777666  5889999999999999999999999999999888888766555555555555


Q ss_pred             cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC-cchhHHHHHHHH-HHHhHHHHHHhhHHHhhhc--cCchHHHHHH
Q 011529          191 KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV-AERSRSLALVYS-GMYLGSVTGLAFSPFLIHR--FGWPSVFYSF  266 (483)
Q Consensus       191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~  266 (483)
                      ..+.+.+++.|++.|++.+...+...+++.+++|+ ++|+...+.... ...+|..++|.+++.+...  .+|+..+...
T Consensus        91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477          91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            11378899999999999999999999999999977 688999999888 6888999999887777654  5788866665


Q ss_pred             HHHHHH
Q 011529          267 GSLGTV  272 (483)
Q Consensus       267 ~~~~~~  272 (483)
                      ......
T Consensus       171 ~~~~~~  176 (338)
T COG0477         171 ALLGLL  176 (338)
T ss_pred             HHHHHH
Confidence            555443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.80  E-value=7.3e-08  Score=96.02  Aligned_cols=128  Identities=15%  Similarity=0.162  Sum_probs=110.6

Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh-c-------ccHHHHHHHHH
Q 011529          131 SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-K-------LGLPFLLVVRV  202 (483)
Q Consensus       131 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~  202 (483)
                      .+.+|.++.++|++.....++.+++....+++.+|++.|+++.++.++.+++.+...... .       .+.+.++...+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            357899999999999999999999999999999999999999999999988775543111 0       03345566678


Q ss_pred             HHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          203 FMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      +.+++.+....+...++.+..|++.+++.+++.+...++|..+++.+++.+.++.|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888888999999999999999999999999999999999999999998877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=1.8e-06  Score=83.43  Aligned_cols=295  Identities=14%  Similarity=0.051  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcC
Q 011529          145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVP  224 (483)
Q Consensus       145 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (483)
                      .++......+.+++.+.+.|+.|.|+.++++..+.....+.+.+.   |-+.+++...+.|+|.+..+...-.++++...
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---NSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---chHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            677788888999999999999999999999999998887776555   56788999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc--------Cch-H----------HHHHHHHHHHHHHHHHHHhccCCC
Q 011529          225 VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--------GWP-S----------VFYSFGSLGTVWFTVWLSKAHSSP  285 (483)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------g~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~  285 (483)
                      ++.+.+..++.......+.++|..+...+...-        +.+ .          ...+.+++..+..+........+.
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~  212 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPS  212 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCc
Confidence            999999999999999999888876654332211        110 0          111111111111111111111111


Q ss_pred             CCC---CCCC-hhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--hCCCc-ch
Q 011529          286 AED---PQLR-PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHFNL-TE  358 (483)
Q Consensus       286 ~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~~  358 (483)
                      +..   .+.. ....+.            ....-+++++++...+....+.............|..+.-.  .+.+. ..
T Consensus       213 ~~~~~~~~~~~~~~~~~------------l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~  280 (461)
T KOG3098|consen  213 KDVVNCKSSSETSFSEL------------LKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYL  280 (461)
T ss_pred             cchhhhhhhccccHHHH------------HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhH
Confidence            000   0000 000000            01122456777777666665555555555555555554432  22222 22


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc----------------chhHHH
Q 011529          359 SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV----------------DSPAMA  422 (483)
Q Consensus       359 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~  422 (483)
                      .++.....+++.+++....+.+.+|.++.+....-.    +...+......+.....+                +.....
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~----~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~  356 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL----IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLA  356 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh----HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHH
Confidence            344444556777777778888887765554322111    111111111111111111                122344


Q ss_pred             HHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeee
Q 011529          423 VLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISI  458 (483)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  458 (483)
                      .++..+.+..-.......+.......|+.+..++++
T Consensus       357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi  392 (461)
T KOG3098|consen  357 LIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSL  392 (461)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            444445555555566667777777777777666543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.74  E-value=2.8e-06  Score=80.75  Aligned_cols=135  Identities=13%  Similarity=0.096  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHh
Q 011529          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS  220 (483)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  220 (483)
                      .+.+.-+-.+...+..+.+.++.+|+..+.-+....++..++.++.++++  +.+.-+++-++.+++.|..-.....+..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt~  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLTH  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            34566667778888889999999999877777778888889999999988  8888899999999998887777777644


Q ss_pred             hhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc--hHHHHHHHHHHHHHHHHHHHhccC
Q 011529          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                       .+++    ...+-+..+.+.++++|+..-..+.+ .++  |..+.+...+.++..+..++..+.
T Consensus       139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             5543    35788888888899999887766665 554  667777776666555554444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=3.6e-08  Score=91.03  Aligned_cols=164  Identities=18%  Similarity=0.138  Sum_probs=128.1

Q ss_pred             HHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcC--CchHHHHHHHHHHHHHHHhhhhhc
Q 011529          115 LCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIATALTPVAAK  191 (483)
Q Consensus       115 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~~~  191 (483)
                      .........-|.++. +.+.+..+..++|....-..+.+.++..+.|.++||++  |-.....+.+..++.+....+++ 
T Consensus       281 ~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~-  359 (464)
T KOG3764|consen  281 FSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT-  359 (464)
T ss_pred             hccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh-
Confidence            344455556677777 56667766669999999999999999999999999999  43334455666666666677888 


Q ss_pred             ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCc------chhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHH
Q 011529          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA------ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYS  265 (483)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  265 (483)
                       ++..+++-++..+++.+..............+.+      ..|...++...+..+|..+||.++|.+.+..|++|...+
T Consensus       360 -~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~i  438 (464)
T KOG3764|consen  360 -SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTI  438 (464)
T ss_pred             -hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHH
Confidence             8888888888888888777776666665555432      457899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011529          266 FGSLGTVWFTVWLSK  280 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~  280 (483)
                      .++..++-.-+....
T Consensus       439 ig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  439 IGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888887765555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.73  E-value=6.6e-08  Score=93.53  Aligned_cols=119  Identities=18%  Similarity=0.103  Sum_probs=88.0

Q ss_pred             hHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcc--cHHHHHH
Q 011529          123 MSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKL--GLPFLLV  199 (483)
Q Consensus       123 ~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~  199 (483)
                      .....|. +.+.+|.++.+.+++.++..+...++.+++|++.||+|+|+.+..+......+..+..+....  +.+..++
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (366)
T TIGR00886       244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV  323 (366)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            3444555 556789999999999999999999999999999999999988777776666655554433211  3444445


Q ss_pred             HHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhH
Q 011529          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLG  242 (483)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  242 (483)
                      ...+.+++.+...+...+.+.+..| +++++++|+.+...++|
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            5555555556666667778888885 79999999999888776

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.69  E-value=1.6e-06  Score=81.54  Aligned_cols=151  Identities=13%  Similarity=0.070  Sum_probs=122.7

Q ss_pred             hhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHh-hcCCchHHHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHh
Q 011529          128 LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-TVGGKAVLGFGVVWWSIATALTPVAA-KLGLPFLLVVRVFMG  205 (483)
Q Consensus       128 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~G  205 (483)
                      |+=.+.||++..+..-+......+..++....|++.. |.++++...+++....++..+..++. ..+.+.+....++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            3345678999999999999999999999999999988 67788888888888777766654432 126788999999999


Q ss_pred             hhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc----------cCchHHHHHHHHHHHHHHH
Q 011529          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR----------FGWPSVFYSFGSLGTVWFT  275 (483)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~  275 (483)
                      ++.|.......+...++..+++.|..+|.+.....++..+|..++|.+.|.          .+|...|.+-++..+++.+
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988762          2355566666666655554


Q ss_pred             HHH
Q 011529          276 VWL  278 (483)
Q Consensus       276 ~~~  278 (483)
                      +..
T Consensus       393 ll~  395 (403)
T PF03209_consen  393 LLG  395 (403)
T ss_pred             HHH
Confidence            443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.67  E-value=5.9e-05  Score=74.44  Aligned_cols=282  Identities=9%  Similarity=0.009  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHH-HHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      ..+..+..+.+..++..+..+..-..-..+.-. ..++..+.++=....+ ...+...+..++++++++.+++-+....+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F   99 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVT-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            334455555555665555544443332221111 1255666666554444 44566788999999999999877666555


Q ss_pred             HHHHHHhhhh--hc-----c----------------------cHHHHHHHHHHHhhhhhcchh-HHHHHHhhhcCCcchh
Q 011529          180 SIATALTPVA--AK-----L----------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWVPVAERS  229 (483)
Q Consensus       180 ~~~~~~~~~~--~~-----~----------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~  229 (483)
                      .....++++.  |.     .                      +.|...+..++.-+-.....+ ..+.+..|.++.+|-.
T Consensus       100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK  179 (491)
T PF03219_consen  100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK  179 (491)
T ss_pred             HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5555444332  10     0                      012233333333333233333 4688999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHhhHHHhhh---------ccCchHHHHHHH----HHHHHHHHHHHHhccCCCCCCCCCChhhH
Q 011529          230 RSLALVYSGMYLGSVTGLAFSPFLIH---------RFGWPSVFYSFG----SLGTVWFTVWLSKAHSSPAEDPQLRPAEK  296 (483)
Q Consensus       230 ~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (483)
                      +..++...+.++|.+++..+...+.+         .-.|...+....    +.+++.........+....++...    +
T Consensus       180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~----~  255 (491)
T PF03219_consen  180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY----P  255 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc----h
Confidence            99999999999999999988888877         123543322211    111222222222221111111100    0


Q ss_pred             HHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcch----hhHHhHHHHHHHHH
Q 011529          297 KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTMAF  372 (483)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~i  372 (483)
                      ....+++++.+..-..+++.++|+|-+..+.+...++....+.+....-..+++.+. ++.+    .|-.....++..++
T Consensus       256 ~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii  334 (491)
T PF03219_consen  256 SAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTII  334 (491)
T ss_pred             hhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHH
Confidence            000001111112223456778899999999998888888888888777777777443 3333    24445556677777


Q ss_pred             HHHHHHHHHHHHhhcC
Q 011529          373 SANLGGWIADTLVSKG  388 (483)
Q Consensus       373 ~~~~~g~l~dr~g~~~  388 (483)
                      ..++++.+.+|+|.+.
T Consensus       335 ~~~l~~~iir~~GW~~  350 (491)
T PF03219_consen  335 MMFLSSNIIRRFGWRT  350 (491)
T ss_pred             HHHHHHHHHHHhhHHH
Confidence            7788899999988763

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.65  E-value=1.3e-06  Score=85.95  Aligned_cols=157  Identities=9%  Similarity=0.005  Sum_probs=101.5

Q ss_pred             hhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhh----hhc
Q 011529          117 NMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV----AAK  191 (483)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~  191 (483)
                      ......+....|. +.+.+|.++.+.++.......+..++..+.+++.+|..+++.+.....+..++.++...    .+ 
T Consensus       231 ~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~-  309 (413)
T PRK15403        231 YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP-  309 (413)
T ss_pred             HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            3333444455676 45556999999999988888888888888888775554444433222222233222221    12 


Q ss_pred             ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHH
Q 011529          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT  271 (483)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  271 (483)
                      .+++..++..++.++|.+...+......-.. ....+|++.++.+.....+..+++..++++.++ +-...|...+++..
T Consensus       310 ~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        310 HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            1444456778888888888877776533211 233579999999999999999999999988765 55666666655555


Q ss_pred             HHHHH
Q 011529          272 VWFTV  276 (483)
Q Consensus       272 ~~~~~  276 (483)
                      +....
T Consensus       388 ~~~~~  392 (413)
T PRK15403        388 VIVVF  392 (413)
T ss_pred             HHHHH
Confidence            44433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.64  E-value=7.9e-07  Score=89.45  Aligned_cols=139  Identities=14%  Similarity=0.060  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHhhH----HHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc-------ccHHHHHHHHHHHhhhhh
Q 011529          141 VGLIQSSFFWGYLLTQIAG----GIWADTVGGKAVLGFGVVWWSIATALTPVAAK-------LGLPFLLVVRVFMGIGEG  209 (483)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~  209 (483)
                      .+++.++..+...+..++.    +++.||++..+.+.++.++.+++.+...+...       .+.++++...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5666667776666666666    55555666667788999999999888766542       135688899999999999


Q ss_pred             cchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh----------ccCchHHHHHHHHHHHHHHHHHHH
Q 011529          210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVFYSFGSLGTVWFTVWLS  279 (483)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~  279 (483)
                      ...|...+++.+..|++.||+.+|.+.....+|..++..+.+....          ..++.+.|...++..++..++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888887777666643211          113567777777666554444433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.60  E-value=2e-06  Score=78.09  Aligned_cols=319  Identities=11%  Similarity=0.046  Sum_probs=189.9

Q ss_pred             hhcCCChhhHH-HHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhc
Q 011529          132 AEFNWNPATVG-LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGV  210 (483)
Q Consensus       132 ~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  210 (483)
                      .+.+++..++. -+.-+..-.+.+.-++.=.+.|-...|++++.-.+.......++.+.+  +.+.+=+.-++.|...+ 
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tA-  110 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATA-  110 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHH-
Confidence            44566666543 111112222333344444688999999998887777777777777888  88888888888988755 


Q ss_pred             chhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC--chHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 011529          211 AMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSPAED  288 (483)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (483)
                      ...+.++++-...+++++.++.|...+..-.|-.+|..++-.++....  +...=.+......++.++.++ .|..++..
T Consensus       111 aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f-LP~v~rSl  189 (433)
T KOG3810|consen  111 AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALF-LPRVKRSL  189 (433)
T ss_pred             HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhh-CCCCchhh
Confidence            457788899999999999999999999999999999999888876433  333222222222233333333 33332211


Q ss_pred             CCCChhhHHHhh--hcccCCCCC----------cccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CCC
Q 011529          289 PQLRPAEKKLIV--SSCASKEPV----------KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL-HFN  355 (483)
Q Consensus       289 ~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  355 (483)
                      -..+.+++....  ++...+.+.          -..+++...+||.+....+.+.+...+++.+..+.....++.- .-.
T Consensus       190 ~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~  269 (433)
T KOG3810|consen  190 YFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPA  269 (433)
T ss_pred             hhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCch
Confidence            000000000000  000000000          0123455678899888888888888888888888877777642 111


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhh
Q 011529          356 LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF  435 (483)
Q Consensus       356 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (483)
                      ....|..-++..+.++++.+..|.+--++.|.       ...++.++.+.-+..+..+....+.|+..+...+......+
T Consensus       270 ~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l  342 (433)
T KOG3810|consen  270 NVYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQL  342 (433)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhh
Confidence            22235566666777788888888876555444       23344444444444444445555555555555554444444


Q ss_pred             hhch-hhhhHhhhccCcceeeeeeeec
Q 011529          436 SQSG-LYSNHQDIAPRYSVSIISINIL  461 (483)
Q Consensus       436 ~~~~-~~~~~~~~~~~~~g~~~g~~~~  461 (483)
                      ..+. ......+...+.-|..+|+|..
T Consensus       343 ~itiA~~~iA~nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  343 TITIATFQIARNLSSELFGLVFGINTF  369 (433)
T ss_pred             hhhHHHHHHHHhhhhhhheeeeehHHH
Confidence            4433 3344445667788999997754

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.59  E-value=2.8e-08  Score=93.42  Aligned_cols=178  Identities=10%  Similarity=-0.029  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHH--------HHHHHHH-HHHHHHhhHHHHHhhcCCchHHHH
Q 011529          104 FIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGL--------IQSSFFW-GYLLTQIAGGIWADTVGGKAVLGF  174 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~--------~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~  174 (483)
                      +.+...+...|+.-...+..+.....+.+..|+.+.+...        ...+... +.+.+-.+...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4555666666666666666677777788877765544332        2222222 222356677888999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHhhh-hhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHH
Q 011529          175 GVVWWSIATALTPVAAKL--GLPFLLVVRVFMGIG-EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (483)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  251 (483)
                      +.+++.+..+..+...+.  +...++++..+..+. .-+.......+-+|.+|.+-|+...|+..+.+-+|.++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            999999998888776621  122233333333322 12233444556789999999999999999999999999999999


Q ss_pred             Hhhh-----ccCchHHHHHHHHHHHHHHHHHHHhc
Q 011529          252 FLIH-----RFGWPSVFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       252 ~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~  281 (483)
                      ++.+     ..+.++.+++.+.+.++..+..++++
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence            9988     67889999999988888777666655

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.59  E-value=2.1e-06  Score=84.57  Aligned_cols=181  Identities=13%  Similarity=-0.037  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhh-hhh-hcCCChh------h----HHHHHHHHHHHHHHHHhhHHHHHhhcCC-chH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSA-EFNWNPA------T----VGLIQSSFFWGYLLTQIAGGIWADTVGG-KAV  171 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~s~~------~----~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~  171 (483)
                      .+..+++..++.++....+..+... +.+ .++.++.      +    -.+....+.+...+.+++..++.+|+|+ |++
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            4445566666666666555555444 332 2433211      1    1244455566666777888899999985 677


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc--c-----------------HHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC--cchhH
Q 011529          172 LGFGVVWWSIATALTPVAAKL--G-----------------LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSR  230 (483)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~  230 (483)
                      ..++.++.+++.+...+.+..  +                 .+..++...+.|+..+..+..-++++++..++  ++.|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            788888888887777654410  0                 36777888899999999999999999999984  55699


Q ss_pred             HHHHHHHHHHhHHHHHHhhHHHhhhccC--chHHHHHHHHHHHHHHHHHHHhccCCC
Q 011529          231 SLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (483)
Q Consensus       231 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (483)
                      .+|+.+.+..+.+++..+..|.+.+.+|  -.+++.+.++..+++.+..++..|+++
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999988888666555  456788888888888888887777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.57  E-value=1.8e-06  Score=86.50  Aligned_cols=139  Identities=14%  Similarity=0.050  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhcCCchH-------HHHHHHHHHHHHHHhh-----hh---hcccHHHHHHHHHHHh
Q 011529          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAV-------LGFGVVWWSIATALTP-----VA---AKLGLPFLLVVRVFMG  205 (483)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~-----~~---~~~~~~~l~~~~~l~G  205 (483)
                      .+++.+...+...+..++.+++.||+++|+.       +.+|.++.+++.+..+     +.   ...+.++++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3556666667787889999999999999873       6677777766654321     11   1125788888899999


Q ss_pred             hhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh----------ccCchHHHHHHHHHHHHHHH
Q 011529          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVFYSFGSLGTVWFT  275 (483)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~  275 (483)
                      +|.+...+...+++.+..|++.++.++|++.....+|..+|..++.....          .-.+.+.|...++..+++.+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865521          00245666666666665555


Q ss_pred             HHHH
Q 011529          276 VWLS  279 (483)
Q Consensus       276 ~~~~  279 (483)
                      +.+.
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            5444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.55  E-value=1.5e-06  Score=87.93  Aligned_cols=180  Identities=16%  Similarity=0.097  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA  184 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  184 (483)
                      .+..+.+..+.+..+......+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.+
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            344455555555555566666777788888876543 5555566667777778889999999999999999999999988


Q ss_pred             Hhhhhhcc-----------cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHh
Q 011529          185 LTPVAAKL-----------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (483)
Q Consensus       185 ~~~~~~~~-----------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (483)
                      +++.....           .+..+....+.......+..+....+.+|.+|.+-|+++.++......+...+-......+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~  454 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI  454 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77643210           1122233333333333445566678899999999999999998887777766655444444


Q ss_pred             hhccCchHHHHHHHHHHHHHHH-HHHHhccCCC
Q 011529          254 IHRFGWPSVFYSFGSLGTVWFT-VWLSKAHSSP  285 (483)
Q Consensus       254 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  285 (483)
                      .+..++...|...+..+.+... ..+...||++
T Consensus       455 ~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  455 TEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            4444445566666666666655 5566666653

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.48  E-value=1.4e-06  Score=62.36  Aligned_cols=70  Identities=13%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      -..+++.+...+.+.|.+|.+.++.|+|+.++|++.++..+...++.+++|.++||+++++.++....++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3456666777788889999999999999999999999999999999999999999999998877665543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.45  E-value=1.4e-06  Score=62.72  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=72.6

Q ss_pred             HhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHH
Q 011529          116 CNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLP  195 (483)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (483)
                      .++.+..+.+.+|.+.++.++|..+.|++.+...+++.++.+...++.++..+++.+..+.+...+..+.+++.+  +.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~--~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH--SFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--chH
Confidence            456788899999999999999999999999999999999999999999998889999999999999999999888  654


Q ss_pred             H
Q 011529          196 F  196 (483)
Q Consensus       196 ~  196 (483)
                      .
T Consensus        82 ~   82 (85)
T PF06779_consen   82 L   82 (85)
T ss_pred             H
Confidence            4

Note that many members are hypothetical proteins.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.4e-06  Score=86.03  Aligned_cols=161  Identities=15%  Similarity=0.145  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh----cCCchHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT----VGGKAVLGFGVVWW  179 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~~~  179 (483)
                      .++..++..++.....+.+..++|.+.++ .|.|..+.+.+...+.++.+++.+++|.++||    ..+|........+.
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34556667777777788888889997777 66999999999999999999999999999999    56666655555444


Q ss_pred             HHHH-HHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcch-hHHHHHHHHHHHh-HHHHHHhhHHHhhhc
Q 011529          180 SIAT-ALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAER-SRSLALVYSGMYL-GSVTGLAFSPFLIHR  256 (483)
Q Consensus       180 ~~~~-~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~-g~~~g~~~~~~l~~~  256 (483)
                      .+.. +.+....  +........+....+.....+.......+...++.| -...+....+.+. |.+.++...+.....
T Consensus       354 ~~~g~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~  431 (495)
T KOG2533|consen  354 AIIGAISLLAAA--VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR  431 (495)
T ss_pred             HHHHHHHHHhhc--cchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence            4333 4433333  344444444444455556667777888777755443 3333334444444 444444454555556


Q ss_pred             cCchHHHHHHH
Q 011529          257 FGWPSVFYSFG  267 (483)
Q Consensus       257 ~g~~~~~~~~~  267 (483)
                      ++|...|....
T Consensus       432 y~~~~~f~~~~  442 (495)
T KOG2533|consen  432 YGWGAVFYMLV  442 (495)
T ss_pred             hhhhhHHHHHH
Confidence            78888874433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.43  E-value=1.2e-06  Score=84.36  Aligned_cols=132  Identities=12%  Similarity=0.048  Sum_probs=99.6

Q ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 011529          316 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR  395 (483)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~  395 (483)
                      .++.++....+++...+..++...+.+++--++++ .+..+...|...+..-.+.++.-++.+++.+|+|+.+.+.    
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~----  440 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY----  440 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceee----
Confidence            35667777777777778888888888888778888 6777888888888888899999999999999999886433    


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccC-cceeeee
Q 011529          396 KIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSVSIIS  457 (483)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g  457 (483)
                           +++.+...-++......++|..+.+-.+-+...........+++..+.|+ .+.++.+
T Consensus       441 -----lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~  498 (618)
T KOG3762|consen  441 -----LGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQG  498 (618)
T ss_pred             -----ehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence                 44444445555555667788888777777777777788888888887654 4555554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.42  E-value=3.9e-05  Score=73.67  Aligned_cols=271  Identities=10%  Similarity=-0.003  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhhhh--cCCChhhHHHHHHHHHHHHHHHHhhHHHHHh-----hcCCchHHHHH-HHH
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMSAE--FNWNPATVGLIQSSFFWGYLLTQIAGGIWAD-----TVGGKAVLGFG-VVW  178 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~-~~~  178 (483)
                      .++.+.+++++.-.+...-.+|.+.++  .+.|.+|.|....+ ...+. .-++|.++.|     |+||||..++- -.+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l   80 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL   80 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence            456677888888877765678888888  78888888764332 22222 3567777777     78999874432 222


Q ss_pred             HHHHHHHhhhhh---------------c-------ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHH
Q 011529          179 WSIATALTPVAA---------------K-------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVY  236 (483)
Q Consensus       179 ~~~~~~~~~~~~---------------~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  236 (483)
                      .++.++.++...               .       .+...+....++.-+..+....+...+.-.+..+++++.+..-..
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            222222222111               0       011122333333444445666777778778888888887777777


Q ss_pred             HHHHhHHHHHHhhHHHhhhc-------------cC---chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC--Ch---hh
Q 011529          237 SGMYLGSVTGLAFSPFLIHR-------------FG---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL--RP---AE  295 (483)
Q Consensus       237 ~~~~~g~~~g~~~~~~l~~~-------------~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~  295 (483)
                      .+.++|..++..+--.+-+.             .|   -..-..+.+.+.++..+...++.+|++......  ++   .+
T Consensus       161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~  240 (544)
T PF13000_consen  161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD  240 (544)
T ss_pred             hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence            77777777765544333210             11   122234456666666666666666654322110  00   00


Q ss_pred             --HHHhhhcccCCC---CCccc-------chhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHh
Q 011529          296 --KKLIVSSCASKE---PVKTI-------PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC  363 (483)
Q Consensus       296 --~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  363 (483)
                        .+....+..+++   ..+..       .+..++|-|.+..+.+..+..-.++.........-+.| .|++.++.+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~  319 (544)
T PF13000_consen  241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLV  319 (544)
T ss_pred             ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHH
Confidence              000000000000   11111       22345678888888888888888888877777778888 899999887776


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011529          364 VLPWLTMAFSANLGGWI  380 (483)
Q Consensus       364 ~~~~~~~~i~~~~~g~l  380 (483)
                      .+..-..++...+.++.
T Consensus       320 li~~P~qii~~~~~~Kw  336 (544)
T PF13000_consen  320 LIDFPFQIILPYYIGKW  336 (544)
T ss_pred             HHhhhHHHHHHHHhhhh
Confidence            54444444444444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.38  E-value=2.4e-05  Score=64.40  Aligned_cols=109  Identities=13%  Similarity=0.172  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhh
Q 011529          143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW  222 (483)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  222 (483)
                      .-.++......+.+++.+.+.+++|.|+.++++.++..+-.+.. +.+  +.+.++..-++.|++.+..+++...++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            34556666677788889999999999999999999988666554 445  778999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHhHHHHHHhhHHHhh
Q 011529          223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLI  254 (483)
Q Consensus       223 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  254 (483)
                      .+++++++..++.......+.++|.++.-.+.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888888887765443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.35  E-value=2.1e-05  Score=80.00  Aligned_cols=158  Identities=13%  Similarity=0.002  Sum_probs=108.9

Q ss_pred             hhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccH-HHHHHHHHHHh
Q 011529          127 ILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL-PFLLVVRVFMG  205 (483)
Q Consensus       127 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~l~G  205 (483)
                      ++.....+|.+......+...   .........+...|++|||.....+.++..++.+...+...... +...+...+..
T Consensus       341 l~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
T KOG0255|consen  341 LSLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGK  417 (521)
T ss_pred             hhhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            444555566555443333333   45555566689999999999999999999999998888763222 24555556666


Q ss_pred             hhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccCCC
Q 011529          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (483)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (483)
                      ++.+..+.....+..|++|...|..+.+.......+|.+++|.+...... ......+.+.+....+...+...+.|++.
T Consensus       418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            66666777779999999999999999999999999999999988755544 22222222245555555555555566654


Q ss_pred             CCC
Q 011529          286 AED  288 (483)
Q Consensus       286 ~~~  288 (483)
                      ...
T Consensus       497 ~~~  499 (521)
T KOG0255|consen  497 GKP  499 (521)
T ss_pred             CCC
Confidence            443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.35  E-value=9.8e-06  Score=74.86  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=111.8

Q ss_pred             hHHhhhhh-hhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcC--CchHHHHHHHHHHHHHHHhhhhhcccHHHHHH
Q 011529          123 MSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVG--GKAVLGFGVVWWSIATALTPVAAKLGLPFLLV  199 (483)
Q Consensus       123 ~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (483)
                      +....+.+ .+.+|.++.|.|-+.+...+...+.+....+..||..  -+-.+..+..++.-..++.....  ....+.+
T Consensus       280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~--~~~~l~~  357 (451)
T KOG2615|consen  280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR--TPVVLYL  357 (451)
T ss_pred             HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--cchhhhH
Confidence            33333443 4779999999999999999999999999999999987  66667777777666667777777  6778888


Q ss_pred             HHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc
Q 011529          200 VRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  256 (483)
                      +..+..+..+...+....++....|+++||..+|+....+.++-++||+++|.+..+
T Consensus       358 ~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  358 GSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            889999998888999999999999999999999999999999999999999887653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.29  E-value=3e-05  Score=77.85  Aligned_cols=148  Identities=17%  Similarity=0.138  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCCh---hhHHHHHHHHHHHHHHHHhhHHHHHhhcCCch-HHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNP---ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA-VLGFGVVWW  179 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~  179 (483)
                      .+...++..++.++.......+.|. ...-++-+.   ...++......++..++..+.|.+..+++|-| .++++.+++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            3444445555555555555555665 333455444   35788888889999999999999999888744 456777777


Q ss_pred             HHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHH
Q 011529          180 SIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (483)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (483)
                      .+++.+++.....|....+...++.|++.|...........-..|+++.+.+.|+......+|+.+|..+..-
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6665555544333555566778899999998888888888888899999999999999999998888765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=98.24  E-value=1.6e-05  Score=80.25  Aligned_cols=174  Identities=6%  Similarity=-0.056  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhc-CC-ChhhHHH-HHHHHHHHHHHHHhhHHHHHhhcCC--------chH-HH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEF-NW-NPATVGL-IQSSFFWGYLLTQIAGGIWADTVGG--------KAV-LG  173 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-s~~~~g~-~~~~~~~~~~~~~~~~g~l~dr~g~--------r~~-~~  173 (483)
                      +++++..+++.......+..-+.++.+.+ |. ...+... +.++..++..+|.+..|.+....-+        |.. +.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            44455555554444444444566677778 65 2332233 7888899999999999988722211        222 33


Q ss_pred             HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHH-HhhHHH
Q 011529          174 FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG-LAFSPF  252 (483)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g-~~~~~~  252 (483)
                      +..+ +.++.+++++..  ....+++.-++.|++.|..++.....++|+|. |+-|+...+......+|..+- -.+.|.
T Consensus       435 ~~~~-~~~~~lll~~~~--p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~  510 (591)
T PTZ00207        435 IPSV-CIITMLTLFLTL--PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE  510 (591)
T ss_pred             HHHH-HHHHHHHHHHHC--CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence            3444 666666665554  33579999999999999999999999999998 999999999999999998776 567777


Q ss_pred             hhhcc----------C---chHHHHHHHHHHHHHHHHHHHhccC
Q 011529          253 LIHRF----------G---WPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       253 l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      +.|+-          |   ++..|++++.+++...+......-+
T Consensus       511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R  554 (591)
T PTZ00207        511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ  554 (591)
T ss_pred             HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence            77531          2   6788999988888877766554433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.24  E-value=1.8e-05  Score=78.49  Aligned_cols=70  Identities=10%  Similarity=0.187  Sum_probs=62.5

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHH-hhcC
Q 011529          319 SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKG  388 (483)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~~  388 (483)
                      +.+.++......+...+.++++..++|.|+++.+|+++.+++.+...+.....++.+++|+++||+ |+|+
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr   77 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM   77 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH
Confidence            345577777788888889999999999999998999999999999999999999999999999999 9884

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.18  E-value=0.0077  Score=58.24  Aligned_cols=282  Identities=8%  Similarity=-0.025  Sum_probs=160.7

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcC---CChhhHHHHHHHHHH-HHHHHHhhHHHHHhhcCCchHHHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFN---WNPATVGLIQSSFFW-GYLLTQIAGGIWADTVGGKAVLGF  174 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~  174 (483)
                      .+..+..++.+.+..++..+..+.+-.    +.+.+.   .++..+.++-+..-+ +..+..++.+++.++..+.+++-.
T Consensus        22 ~r~E~~kflpl~Ll~f~I~~ny~~lR~----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          22 RRYELKKFLPLALLFFCILFNYNLLRS----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            334455555555555555554443333    444443   456777888888877 677889999999999999998776


Q ss_pred             HHHHHHHHHHHhhhhhc-------c-----------------------cHHHHHHHHHHHhhhhhcchh-HHHHHHhhhc
Q 011529          175 GVVWWSIATALTPVAAK-------L-----------------------GLPFLLVVRVFMGIGEGVAMP-AMNNILSKWV  223 (483)
Q Consensus       175 ~~~~~~~~~~~~~~~~~-------~-----------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~  223 (483)
                      ....+....+++++.-.       .                       +.|...+..++.-+-...... .......|..
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66666666555544310       0                       113333333333332233333 4577888999


Q ss_pred             CCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC----------chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCh
Q 011529          224 PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG----------WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP  293 (483)
Q Consensus       224 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (483)
                      ..+|-.|.+++++...+++..++..+..++.++-.          .+..+.+.+...+++..+..+..+...+.+.-...
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~  257 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLR  257 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHH
Confidence            88999999999999999999999998888876321          22333333333333333333332222111110000


Q ss_pred             hhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcch---hhHHhHHHHHH-
Q 011529          294 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE---SGLFCVLPWLT-  369 (483)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~-  369 (483)
                      ..++   ++.+..+-.-..+++.+.|+|-++.+.+...+++.+.+.+....-.-.++.+..+...   .+-+....++. 
T Consensus       258 ~~~k---k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~  334 (509)
T COG3202         258 AKKK---KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVS  334 (509)
T ss_pred             Hhcc---cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHH
Confidence            0000   0000001111234667788898988888888888887777654444444423222222   23334444454 


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 011529          370 MAFSANLGGWIADTLVSK  387 (483)
Q Consensus       370 ~~i~~~~~g~l~dr~g~~  387 (483)
                      .++...+++.+.+|.|..
T Consensus       335 ~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         335 LVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHhhhHHHHHHhhHH
Confidence            455666788888888854

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.10  E-value=3.6e-05  Score=55.09  Aligned_cols=64  Identities=20%  Similarity=0.265  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          324 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      +.+-...++...+...+..++|.|+++ .|+++.++|.+.++..+..+++.+++|.++||.++++
T Consensus         3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~   66 (77)
T PF12832_consen    3 LPLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK   66 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence            345566788888899999999999998 8999999999999999999999999999999999884

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.99  E-value=0.00024  Score=69.81  Aligned_cols=125  Identities=18%  Similarity=0.236  Sum_probs=110.6

Q ss_pred             hhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHH-HHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhh
Q 011529          128 LPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGG-IWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGI  206 (483)
Q Consensus       128 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  206 (483)
                      -.+...++++..+.+...+.......+++.+.. .+...+|-|+++..|++...+.....++.+  +.|+++...++.++
T Consensus       266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVAL  343 (463)
T ss_pred             EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHh
Confidence            346778999999999988888888888888877 777788999999999999999999999999  88888888888777


Q ss_pred             hhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh
Q 011529          207 GEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (483)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (483)
                      . ....+...+.++.+.+++++|+++++......+..+++|.+-+.+..
T Consensus       344 ~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  344 A-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             h-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            6 56789999999999999999999999999999999999998887754

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.86  E-value=0.00012  Score=70.82  Aligned_cols=111  Identities=17%  Similarity=0.278  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcc-------cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCc---chhHHHHHHHHHH
Q 011529          170 AVLGFGVVWWSIATALTPVAAKL-------GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA---ERSRSLALVYSGM  239 (483)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  239 (483)
                      |+++++.+++.+|.+++.++...       +.+.++++..+.++|.|+.-|...++..|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888875443211       2367889999999999999999999999999865   4678889999999


Q ss_pred             HhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          240 YLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       240 ~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      ++|..+++.+.+++.++.||...|.+.++..+++.+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998888877766554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.74  E-value=0.00044  Score=66.01  Aligned_cols=138  Identities=14%  Similarity=0.109  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHH--HHHHHHHH-
Q 011529          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVV--WWSIATAL-  185 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~--~~~~~~~~-  185 (483)
                      +.+.++..+.....+.+.+.. -.++.-...+.-+...+|.+|..++.--...+  |+  |++.+.+.+  +..+..++ 
T Consensus       252 L~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~  326 (402)
T PF02487_consen  252 LFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQ  326 (402)
T ss_pred             HHHHHHHHHHHHhchHHHhcC-CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHH
Confidence            445555555544444333221 12233234566777777887766665433221  33  443333322  22222222 


Q ss_pred             --hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHh
Q 011529          186 --TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL  253 (483)
Q Consensus       186 --~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  253 (483)
                        .-+.+  +.|.+++..+..|+..|..+......+.+..++++|..++|....+-++|..++.+++-.+
T Consensus       327 s~~~fip--si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  327 SWYRFIP--SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHhh--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence              23345  7888889999999999999999999999999999999999999999999999999887554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.70  E-value=0.0012  Score=63.86  Aligned_cols=143  Identities=17%  Similarity=0.137  Sum_probs=108.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHhhcCCc-------hHHHHHHHHHHHHHHHhhhh--------hcccHHHHHHHHHH
Q 011529          139 ATVGLIQSSFFWGYLLTQIAGGIWADTVGGK-------AVLGFGVVWWSIATALTPVA--------AKLGLPFLLVVRVF  203 (483)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~l  203 (483)
                      -..++..+...+.-++..|+..++..|.+++       .-+.++..+.+.+.+++...        ...+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457788888888889999998888885443       12456666666666555433        11367899999999


Q ss_pred             HhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHH------hhhccCchHHHHHHHHHHHHHHHHH
Q 011529          204 MGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF------LIHRFGWPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~------l~~~~g~~~~~~~~~~~~~~~~~~~  277 (483)
                      +++|.=+..|...+++.+..|+.-.+..++.+-.....|..++..+++.      ..+.......|+.++...++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988887773      3333445667777777777766665


Q ss_pred             HHhc
Q 011529          278 LSKA  281 (483)
Q Consensus       278 ~~~~  281 (483)
                      +...
T Consensus       484 ~~~~  487 (498)
T COG3104         484 LLLS  487 (498)
T ss_pred             HHhh
Confidence            5443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.64  E-value=0.01  Score=54.16  Aligned_cols=72  Identities=11%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             HHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhc
Q 011529          149 FWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWV  223 (483)
Q Consensus       149 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  223 (483)
                      .+..+...++.+.++.++|.|+++.++...+......- +-+  .+..++......|++.+..+..--+++++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEP--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cch--hHHhhccHHHhhccccccccccCcceecHHH
Confidence            33444556666689999999999998888776644432 223  5778888999999999988877766666554

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.59  E-value=0.00037  Score=67.70  Aligned_cols=110  Identities=14%  Similarity=-0.061  Sum_probs=72.6

Q ss_pred             HHhhHHHHHHHhCCCcch-hhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchh
Q 011529          341 LTWMPTYYNQVLHFNLTE-SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP  419 (483)
Q Consensus       341 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (483)
                      ..+...++.+.+|++..+ .|.+.+.+..+..+..+.+|++.||+|.|+         ++..+.+...+...+....+..
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~---------vL~l~~l~Wsl~t~L~~fa~Sl  115 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP---------VLVLQALSFVCVWLLLLLGTSV  115 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666679999999 999999999999999999999999999884         3333344444443333344444


Q ss_pred             HHHHHHHHHhhhhhhhhhchhhhhHhh-hccCcceeeeeeee
Q 011529          420 AMAVLCMACSQGTDAFSQSGLYSNHQD-IAPRYSVSIISINI  460 (483)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~  460 (483)
                      ..+.++-++.+...+... ....++.. .++++|+++.|+..
T Consensus       116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~  156 (511)
T TIGR00806       116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSR  156 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHH
Confidence            444444444444444444 55555555 45577898887543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.58  E-value=0.002  Score=65.20  Aligned_cols=178  Identities=13%  Similarity=0.128  Sum_probs=131.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhh-hhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-CCchHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDR-VNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVW  178 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~  178 (483)
                      ..|+....+.....+.-+.. +.....+.++.++++.+...+.-....+.-......+.++.++|-+ ||-+++.++.++
T Consensus        34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i  113 (571)
T KOG1237|consen   34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI  113 (571)
T ss_pred             chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34444444333333333333 3345667778889998888888888888888889999999999975 899999999888


Q ss_pred             HHHHHHHhhhhhc-------------c-------c---HHHHHHHHHHHhhhhhcchhHHHHHHhhhcC---C-c--chh
Q 011529          179 WSIATALTPVAAK-------------L-------G---LPFLLVVRVFMGIGEGVAMPAMNNILSKWVP---V-A--ERS  229 (483)
Q Consensus       179 ~~~~~~~~~~~~~-------------~-------~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~-~--~r~  229 (483)
                      ..++..+..+...             .       +   ...+....-+..+|.|+.-+...++-+|-++   + +  .+.
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~  193 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP  193 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence            8888655432210             0       0   1356666778888999999999999999997   2 2  224


Q ss_pred             HHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 011529          230 RSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL  278 (483)
Q Consensus       230 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  278 (483)
                      ..+.++....++|..++-.+.-+..+..+|...|.+..+..+++.++++
T Consensus       194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  194 SFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence            7888999999999999999888888889999999888877776665554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.57  E-value=9.2e-05  Score=70.26  Aligned_cols=178  Identities=10%  Similarity=-0.060  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCC-chHHHHHHHHHHHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGG-KAVLGFGVVWWSIATA  184 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~  184 (483)
                      +.++.+.+.+.....+.....+......-|.+....|++.....++..+++.+.|.+.||.+. |.++++......++..
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            344444444444444444555554555667777889999999999999999999999999865 5555555555555532


Q ss_pred             Hhhhhh-c-ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC----
Q 011529          185 LTPVAA-K-LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG----  258 (483)
Q Consensus       185 ~~~~~~-~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----  258 (483)
                      ...... . ...+.+.....+.|++.....|...-+-.|..-|..-+.-.|+.+..+++-.++-..+.+...+..+    
T Consensus       348 ~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~  427 (480)
T KOG2563|consen  348 MLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGN  427 (480)
T ss_pred             HHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCC
Confidence            222221 1 1335666777788888888899888888887666666778888888888888888888888877665    


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccC
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      +...-+......++..++..+++++
T Consensus       428 ~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  428 TFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             CccchhHhHHHHHHHHHHHhhhhhh
Confidence            4333333444444444444444444

>PRK03612 spermidine synthase; Provisional

Probab=97.57  E-value=0.009  Score=60.17  Aligned_cols=142  Identities=17%  Similarity=0.167  Sum_probs=86.2

Q ss_pred             hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHH-HHHH-HHHHHHHhhhhhcc--cH-HHHHHHHHHH
Q 011529          130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGF-GVVW-WSIATALTPVAAKL--GL-PFLLVVRVFM  204 (483)
Q Consensus       130 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~-~~~~~~~~~~~~~~--~~-~~l~~~~~l~  204 (483)
                      +..-+|-+....+.+.+++.++..+|..+.+++.++.-++...+- +..+ ..++..+.......  .. ..++...++.
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445578889999999999999999999999988744332222111 1111 11111111111100  11 2233445566


Q ss_pred             hhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh-ccCchHHHHHHHHHHHH
Q 011529          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTV  272 (483)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~~~~~~~~~~~~~~  272 (483)
                      ++..|...|....+..+.. .++-++..|.......+|+++|.++.+++.- .+|-....++.+.+.++
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~  188 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLL  188 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            7877888777777665533 3345778899999999999999998887654 67755444444444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.54  E-value=0.00031  Score=67.01  Aligned_cols=131  Identities=12%  Similarity=0.087  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 011529          325 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL  404 (483)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  404 (483)
                      .+.+...+...-.+.+-...+- .++.++.++...|++...+.+...+..++.|++.||+.|++++..+.         .
T Consensus        37 il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~---------~  106 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI---------F  106 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH---------H
Confidence            3444444444433444333333 23448999999999999999999999999999999999996554443         3


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccC-cceeeee-eeecCCCC
Q 011529          405 GPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSVSIIS-INILRAPG  465 (483)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g-~~~~~~~g  465 (483)
                      +.....+.......+|.++++=.+-+.+.....+...+.+.|..++ +|++.++ +++....|
T Consensus       107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG  169 (493)
T KOG1330|consen  107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG  169 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence            3333333333346677777777777777777788888999998875 5899888 33333333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.23  E-value=0.0034  Score=61.09  Aligned_cols=130  Identities=16%  Similarity=0.065  Sum_probs=97.9

Q ss_pred             hhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh---hhhhc-----cc
Q 011529          122 NMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT---PVAAK-----LG  193 (483)
Q Consensus       122 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~-----~~  193 (483)
                      .+...+..+....|+++..+|..-+...+....+.+...++.+|+|..|.-.++...-.++..+.   .+.+.     .+
T Consensus       276 sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s  355 (432)
T PF06963_consen  276 SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS  355 (432)
T ss_pred             cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence            34555555666669999999999999999999999999999999999888777766444333222   12221     13


Q ss_pred             HHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHH
Q 011529          194 LPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (483)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  251 (483)
                      ...++.+-++.=+|.=....+..-++.|..|+++||...|......++--++-..++-
T Consensus       356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555556666778888889999999999999999999999988888776653

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.22  E-value=0.0017  Score=57.35  Aligned_cols=101  Identities=14%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             cchhHHHHHHHHHHHhHHHHHHhh--HH-Hhhh--ccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhh
Q 011529          226 AERSRSLALVYSGMYLGSVTGLAF--SP-FLIH--RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV  300 (483)
Q Consensus       226 ~~r~~~~~~~~~~~~~g~~~g~~~--~~-~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (483)
                      ++|+....+...+.++|.++.-..  .. -..+  .-.|++.+.+.+++.++.+++..++-.+-....+. +++++.   
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k~---   77 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEKE---   77 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccccc---
Confidence            455666666677777777765332  22 0111  23599999988888877777766664332111111 011100   


Q ss_pred             hcccCCCCCcccchhhhhcChhHHHHHHHHHHHH
Q 011529          301 SSCASKEPVKTIPWGLILSKPPVWALIVSHFCHN  334 (483)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (483)
                          ..+..++....+.+|+|..|...+.+....
T Consensus        78 ----~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   78 ----NSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ----cccccccchHHHHHccchHHHHHHHHHHHh
Confidence                001112356778999999998777666544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.17  E-value=0.001  Score=64.84  Aligned_cols=182  Identities=14%  Similarity=0.157  Sum_probs=111.3

Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhHHhh-hhhhhhcCCChhhH----HHHHHHHHHHHHHHHhhHHHHH-hhcCCchHH
Q 011529           99 FPKRWFIVVLCFSAFLLCNMDRVNMSIAI-LPMSAEFNWNPATV----GLIQSSFFWGYLLTQIAGGIWA-DTVGGKAVL  172 (483)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~-dr~g~r~~~  172 (483)
                      .+..|.....+....+...+......... +.....++.+..+.    |...++..+......+..+... -++..|+.+
T Consensus       257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~  336 (488)
T KOG2325|consen  257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRII  336 (488)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceee
Confidence            34455566666666666555555433333 33455566655544    4444444444444444444433 233445555


Q ss_pred             HHHHHHHHHHHHHhhh----hh-----c--------------------ccHHHHHHH-HHHHhhhhhcchhHHHHHHhhh
Q 011529          173 GFGVVWWSIATALTPV----AA-----K--------------------LGLPFLLVV-RVFMGIGEGVAMPAMNNILSKW  222 (483)
Q Consensus       173 ~~~~~~~~~~~~~~~~----~~-----~--------------------~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~  222 (483)
                      ..+.++......+...    ..     .                    .+.+.+++. -++.|.+.-.......++-++.
T Consensus       337 ~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySki  416 (488)
T KOG2325|consen  337 LLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKI  416 (488)
T ss_pred             eehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHH
Confidence            5554443333332211    00     0                    012233333 4566777777778889999999


Q ss_pred             cCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHh
Q 011529          223 VPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK  280 (483)
Q Consensus       223 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  280 (483)
                      ..+++++...++++....++..+||++........|.++.+.+.....++...++...
T Consensus       417 Lgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~  474 (488)
T KOG2325|consen  417 LGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF  474 (488)
T ss_pred             hCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998998888777766666555444433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.13  E-value=0.013  Score=55.65  Aligned_cols=113  Identities=11%  Similarity=0.017  Sum_probs=53.4

Q ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHH----HHHhhHHHHHhhcCCchHHHHHHHHH-HHH--
Q 011529          110 FSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYL----LTQIAGGIWADTVGGKAVLGFGVVWW-SIA--  182 (483)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~----~~~~~~g~l~dr~g~r~~~~~~~~~~-~~~--  182 (483)
                      ++..+-....++.+....+++.+++-.+.. .-.....+.+...    +....-..+.-|. |+++ ..+.... .+.  
T Consensus        24 ~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~-~~~l~~~~il~i~  100 (406)
T KOG1479|consen   24 LLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRV-GYLLSLIAILFIV  100 (406)
T ss_pred             HHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH
Confidence            333333445566666667776666544333 3333333444444    4444444444442 1221 1111111 111  


Q ss_pred             HHHhhhh-----hcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCc
Q 011529          183 TALTPVA-----AKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA  226 (483)
Q Consensus       183 ~~~~~~~-----~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  226 (483)
                      .+.....     ....++..++..++.+.+.+..........++ +|+|
T Consensus       101 ~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~  148 (406)
T KOG1479|consen  101 TLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSE  148 (406)
T ss_pred             HHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHH
Confidence            1111221     11135566677778888888777777776665 4444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.05  E-value=0.0036  Score=56.10  Aligned_cols=117  Identities=11%  Similarity=0.069  Sum_probs=68.3

Q ss_pred             HHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh-
Q 011529          336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS-  414 (483)
Q Consensus       336 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  414 (483)
                      ..+.+..|.|. +++.+|+++++...+.....++..+| ++.|.+.|++|.+.       ...+.......+..+.... 
T Consensus        17 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-------~l~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   17 TTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-------VLLIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             cccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            33455555555 45569999999999999988888875 88999999999772       2222222222222222221 


Q ss_pred             -c-c--chhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeeeec
Q 011529          415 -H-V--DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINIL  461 (483)
Q Consensus       415 -~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  461 (483)
                       . .  ...+.+.+...++................+..|++||.+.|+.-+
T Consensus        88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~  138 (250)
T PF06813_consen   88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKG  138 (250)
T ss_pred             hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhH
Confidence             1 1  223333333334433333333434444446678999999986544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.068  Score=52.31  Aligned_cols=143  Identities=14%  Similarity=0.210  Sum_probs=95.9

Q ss_pred             HHHHHHHHhhhhhhhHHhhhh-h--hhhcCCCh-hhHHHHHHHHHHHHHHHHhhHHHHHhh---cCCchHHHHHHHHHHH
Q 011529          109 CFSAFLLCNMDRVNMSIAILP-M--SAEFNWNP-ATVGLIQSSFFWGYLLTQIAGGIWADT---VGGKAVLGFGVVWWSI  181 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g~r~~~~~~~~~~~~  181 (483)
                      +....+..+.....+....|. +  ....+.+. ...++......++..+++.+.+.+.+|   +|+++.+.++..+..+
T Consensus       245 L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~  324 (461)
T KOG3098|consen  245 LFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLI  324 (461)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHH
Confidence            333444444444444444444 2  21233333 334444455666666777777777754   7899999988888887


Q ss_pred             HHHHhhhhhc----------------ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHH
Q 011529          182 ATALTPVAAK----------------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT  245 (483)
Q Consensus       182 ~~~~~~~~~~----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  245 (483)
                      +.++..+...                .++...++..++.|++.+........++.+.+ +++|..+.++...-..++..+
T Consensus       325 ~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  325 GFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             HHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence            7776543321                03457788889999999999999999999999 788899999988888888777


Q ss_pred             HHhhHHH
Q 011529          246 GLAFSPF  252 (483)
Q Consensus       246 g~~~~~~  252 (483)
                      +-.....
T Consensus       404 ~~f~~~~  410 (461)
T KOG3098|consen  404 AFFFSPY  410 (461)
T ss_pred             Hhhhhhh
Confidence            6555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.90  E-value=0.013  Score=57.92  Aligned_cols=123  Identities=15%  Similarity=0.136  Sum_probs=97.4

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhh-hhhcc-------cHHHHHHHHHHHhhh
Q 011529          136 WNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTP-VAAKL-------GLPFLLVVRVFMGIG  207 (483)
Q Consensus       136 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~l~~~~~l~G~~  207 (483)
                      .++...|.+..+..++..++..+.....-+..-|+++.++.++.++..+.-. +....       +.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            8999999999999999999999999888888889998888877776655422 11110       123334445666666


Q ss_pred             hhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          208 EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ....+-....+++++.|+..-|..+++.....++|..++..++..+.+.++
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            667777778899999999999999999999999999999999999887665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.88  E-value=0.035  Score=54.60  Aligned_cols=112  Identities=13%  Similarity=0.038  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHhhcCCc-hHHHHHHHHHHHHHHHhhhhhc----------ccHHHHHHHHHHHhhhh
Q 011529          140 TVGLIQSSFFWGYLLTQIAGGIWADTVGGK-AVLGFGVVWWSIATALTPVAAK----------LGLPFLLVVRVFMGIGE  208 (483)
Q Consensus       140 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~G~~~  208 (483)
                      ..-++..++.++..+|..+..+.. .-++| +.+.+..+.-.+..-++.++..          .+-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            344566777888888777554321 11222 1344444444443333222110          15567778899999999


Q ss_pred             hcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHH
Q 011529          209 GVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (483)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (483)
                      |-.......+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999877533

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.74  E-value=0.1  Score=51.40  Aligned_cols=100  Identities=14%  Similarity=-0.011  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHH-hhh----hh-cccHHHHHHHHHHHhhhhhcchhHHHHH
Q 011529          145 QSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL-TPV----AA-KLGLPFLLVVRVFMGIGEGVAMPAMNNI  218 (483)
Q Consensus       145 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~----~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~  218 (483)
                      .....+...+..+..-.+..|+..|.=+..++++..+..++ ..+    .+ ...++..++..++.|++.+.......++
T Consensus        51 ~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gl  130 (437)
T TIGR00939        51 TLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGL  130 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhh
Confidence            33444555555555555666665433233343322222211 111    11 1135666777788899988888887777


Q ss_pred             HhhhcCCcchhHHHHHHHHHHHhHHHHHHhh
Q 011529          219 LSKWVPVAERSRSLALVYSGMYLGSVTGLAF  249 (483)
Q Consensus       219 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  249 (483)
                      .+ .+|++    .++.+..+.+++++++.++
T Consensus       131 a~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       131 AG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             cc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            76 45543    4555556666666555543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.61  E-value=0.084  Score=49.44  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011529          331 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG  388 (483)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~  388 (483)
                      .+...+...-..|.=..+++ +|++..+++.++....+...+...+.|.+.||+|||+
T Consensus        44 ~La~~aDWLQGpY~Y~LY~~-yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~  100 (354)
T PF05631_consen   44 LLAMAADWLQGPYLYALYES-YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK  100 (354)
T ss_pred             HHHHHHHHhhcchhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence            33334443333333334444 8999999999999999999999999999999999884

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.53  E-value=0.0022  Score=66.53  Aligned_cols=59  Identities=10%  Similarity=-0.099  Sum_probs=46.5

Q ss_pred             HHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011529          336 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTV  394 (483)
Q Consensus       336 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~  394 (483)
                      ...++....-.-++++++++..+.|++.+.+.++.+++.++.+++.||.+|++.+..+.
T Consensus        47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~  105 (633)
T TIGR00805        47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGC  105 (633)
T ss_pred             HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecH
Confidence            33444433334455569999999999999999999999999999999999997665553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=96.48  E-value=0.0098  Score=53.76  Aligned_cols=138  Identities=15%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHh
Q 011529          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILS  220 (483)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  220 (483)
                      .|.+...-.+...+..+.+....||+....-+.+..++.+.+..+.++++  +.++-+.+..+..++.|..-....++.+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            45555566677777788888889987655556667778888888889998  8898888888888888776655555444


Q ss_pred             hhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc--cCchHHHHHHHHHHHHHHHHHHHhccCCC
Q 011529          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTVWFTVWLSKAHSSP  285 (483)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (483)
                      + +++.    ..+.++.+.+.++++|..--..+.+.  +..+.+.++...+.++.+...++..++++
T Consensus       142 ~-Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe  203 (409)
T KOG3880|consen  142 R-YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE  203 (409)
T ss_pred             c-CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence            3 3322    34556666666677776655555553  45677777777776666666655555443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.35  E-value=0.00091  Score=67.53  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHH-HHHHHHhhHHHHHhhcC--CchHHHHHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFW-GYLLTQIAGGIWADTVG--GKAVLGFGVV  177 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~~  177 (483)
                      +...+....++..........+..+.|. +..+|+.++.+.+++..+..+ +.+++.+++|++..|+.  .|..+....+
T Consensus       303 ~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v  382 (539)
T PF03137_consen  303 TNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV  382 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence            3445666666777777777777888887 777899999999998876655 66688899999999874  3444443333


Q ss_pred             HHHHHHHH---hhh--h---------hcc--------------------------------------cHHHHHHHHHHHh
Q 011529          178 WWSIATAL---TPV--A---------AKL--------------------------------------GLPFLLVVRVFMG  205 (483)
Q Consensus       178 ~~~~~~~~---~~~--~---------~~~--------------------------------------~~~~l~~~~~l~G  205 (483)
                      ...++.++   ..+  .         ..+                                      .+..+++..++.-
T Consensus       383 ~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~  462 (539)
T PF03137_consen  383 VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILS  462 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHH
Confidence            33333222   000  0         000                                      1233444444444


Q ss_pred             hhhhcchhHHHHHHhhhcCCcchhHHHHHHHHH-HHhHHHHHHhhHHHhhhc
Q 011529          206 IGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-MYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~  256 (483)
                      +..+.........+-+.+++++|..++|+.... ..+|.+-||++.|.++|.
T Consensus       463 ~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  463 FFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            555555566666777889999999999996655 457788999999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.28  E-value=0.041  Score=39.83  Aligned_cols=52  Identities=15%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          335 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      .+-+.+...+|...++ .++|..+.+++.+...++..+|.+...++.++.+++
T Consensus         6 igRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~   57 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR   57 (85)
T ss_pred             hHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            3445666788888877 899999999999999999999999999988875544

Note that many members are hypothetical proteins.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.11  E-value=0.008  Score=48.47  Aligned_cols=87  Identities=13%  Similarity=0.059  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhh
Q 011529          363 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYS  442 (483)
Q Consensus       363 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (483)
                      .+...++..++.++.+++.||+++|+..       .  .+..............++.+.......+.+.......+....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVL-------L--VGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHH-------H--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3455678889999999999999988432       1  111111122222222233343333334433344444555666


Q ss_pred             hHhhhcc-Ccceeeeee
Q 011529          443 NHQDIAP-RYSVSIISI  458 (483)
Q Consensus       443 ~~~~~~~-~~~g~~~g~  458 (483)
                      ...+..| ++++.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~   91 (141)
T TIGR00880        75 LIADIYPPEERGVALGL   91 (141)
T ss_pred             HHHHHCChhhhhHHHHH
Confidence            6666654 557777764

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.90  E-value=0.043  Score=56.37  Aligned_cols=153  Identities=12%  Similarity=0.098  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHH-HHHHHhhHHHHHhhcC--CchHHHHHHHHH
Q 011529          104 FIVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWG-YLLTQIAGGIWADTVG--GKAVLGFGVVWW  179 (483)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g--~r~~~~~~~~~~  179 (483)
                      .+.....++..+.......+..++|. +.++||.+...+..+.+...+. .+++.+++|++..|+.  .|....+.++..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            35666667777777777777888888 7778999999999998665554 5577788999999874  344443333333


Q ss_pred             HHHHHH---hhhh-------------------------------------------------------------------
Q 011529          180 SIATAL---TPVA-------------------------------------------------------------------  189 (483)
Q Consensus       180 ~~~~~~---~~~~-------------------------------------------------------------------  189 (483)
                      .+..+.   ..+.                                                                   
T Consensus       472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~  551 (735)
T KOG3626|consen  472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS  551 (735)
T ss_pred             HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence            333222   0000                                                                   


Q ss_pred             ------------h----c--------------ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHH-
Q 011529          190 ------------A----K--------------LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSG-  238 (483)
Q Consensus       190 ------------~----~--------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-  238 (483)
                                  +    .              ..+..+++..++.-+..+...+....++-+.+++|+|..++|+..+. 
T Consensus       552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~i  631 (735)
T KOG3626|consen  552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLI  631 (735)
T ss_pred             CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHH
Confidence                        0    0              00223444444444444455566667778889999999999996555 


Q ss_pred             HHhHHHHHHhhHHHhhhc
Q 011529          239 MYLGSVTGLAFSPFLIHR  256 (483)
Q Consensus       239 ~~~g~~~g~~~~~~l~~~  256 (483)
                      ..+|.+-+|++-|+++|.
T Consensus       632 rllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  632 RLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHhcCCchHhhhhhHhh
Confidence            457888899999999873

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.85  E-value=0.0014  Score=57.45  Aligned_cols=215  Identities=11%  Similarity=0.111  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHH---------HhhcCCchHH-HHHHH
Q 011529          108 LCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW---------ADTVGGKAVL-GFGVV  177 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---------~dr~g~r~~~-~~~~~  177 (483)
                      ....+.+.+-....+....+-.+.++.|.++.....++.+..+..++..++.|..         .||+|||+.. .++.+
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~wh~~gt~  100 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSWHLIGTV  100 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeeeeecccE
Confidence            3456667776666666666667788889999998899999999999999988744         4689988753 22222


Q ss_pred             HHHHHH-HHhhh--------hh--cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHH
Q 011529          178 WWSIAT-ALTPV--------AA--KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTG  246 (483)
Q Consensus       178 ~~~~~~-~~~~~--------~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  246 (483)
                      +..++. ..+.+        ..  ..|..++.+..++.|++.+...-...+.                            
T Consensus       101 lVslSf~~ifg~a~iF~~~~~~s~vanlglyaialvVFgv~~A~~ke~tea~----------------------------  152 (412)
T KOG4830|consen  101 LVSLSFPMIFGFAKIFLCKSTTSEVANLGLYAIALVVFGVGWASVKESTEAL----------------------------  152 (412)
T ss_pred             EEEEechhhcCceeEEeeccHHHHHHHhHHHHHHhheeeeeeecccccHHHH----------------------------
Confidence            111110 00000        00  0012222222222333222111100000                            


Q ss_pred             HhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHH
Q 011529          247 LAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWAL  326 (483)
Q Consensus       247 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (483)
                                  .|+.-|....+.+...++++...+++. ..-..++.+.             ...+|..-+++-.+..+
T Consensus       153 ------------~R~~~~~~v~lG~~~~~vF~~~TrEP~-~~~~~~~s~~-------------~Rm~W~~WF~~v~~YQi  206 (412)
T KOG4830|consen  153 ------------IRLAGWLVVVLGITVAFVFYAFTREPT-NSFSSDASEL-------------VRMHWTSWFGHVQFYQI  206 (412)
T ss_pred             ------------HHHhhhheeeeceeEEEEEeecccCcc-cccCcchhhh-------------hcccchhhhhhhHHHHH
Confidence                        122222222222211112222222221 1111111111             13456666777788888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHH
Q 011529          327 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANL  376 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~  376 (483)
                      .+.+.+.-...+.-..+++.|..+.+.++....+++-.+..+.....+.+
T Consensus       207 AllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v  256 (412)
T KOG4830|consen  207 ALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV  256 (412)
T ss_pred             HHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence            88888888888888899999999888888877777666666555544443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.75  E-value=0.079  Score=50.98  Aligned_cols=103  Identities=5%  Similarity=-0.120  Sum_probs=76.3

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHH--HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhH
Q 011529          137 NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG--FGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPA  214 (483)
Q Consensus       137 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  214 (483)
                      ....-|.+-++..+...++.+..|++-.++.+-.-+.  ...++.+...+++...+  +.|...++.++.+.......+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~--~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG--NIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444588888888889999999999966666543333  33444455556666777  8999999999998888888888


Q ss_pred             HHHHHhhhcCCcchhHHHHHHHHHHHh
Q 011529          215 MNNILSKWVPVAERSRSLALVYSGMYL  241 (483)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~~~~~~~~  241 (483)
                      +..-++.....+.-+..+|+......+
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf~Al~  387 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTFVALV  387 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHHHHHH
Confidence            888888888777778777776655443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.65  E-value=0.0036  Score=58.74  Aligned_cols=109  Identities=12%  Similarity=0.037  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh---c--------ccHHHHHHHHHHHhhhhhcc
Q 011529          143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA---K--------LGLPFLLVVRVFMGIGEGVA  211 (483)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~l~~~~~l~G~~~~~~  211 (483)
                      .+..++.++..+|..+.++..-+..+++.+.+..+.-.+...++.++.   .        .+-+..++..++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            356678888888888877643221133334444444433332222221   0        14466778889999999999


Q ss_pred             hhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHH
Q 011529          212 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP  251 (483)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  251 (483)
                      .+....+.++..++++|..+-.+...+..+|..+|..++-
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             -HHHH-----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888888888888887653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=91.95  E-value=2.2  Score=40.26  Aligned_cols=167  Identities=13%  Similarity=0.101  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhhcCC-ChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHH---
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAEFNW-NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSI---  181 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~---  181 (483)
                      .+.+.+++++.....-+.......++.+++- |....+.-..+-.....+..++.|...|+..|+|++....++.-+   
T Consensus        29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~  108 (503)
T KOG2601|consen   29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI  108 (503)
T ss_pred             eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence            3446777888888877788777777777654 444455555556666778888999999999999988766554222   


Q ss_pred             ---HHHHhhhhhc----ccHHHHHHHHHHHhhhhhcc--hhHHHHH--Hhhhc----CCcchhHHH---HHHHHHHHhHH
Q 011529          182 ---ATALTPVAAK----LGLPFLLVVRVFMGIGEGVA--MPAMNNI--LSKWV----PVAERSRSL---ALVYSGMYLGS  243 (483)
Q Consensus       182 ---~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~--~~~~~~~--~~~~~----~~~~r~~~~---~~~~~~~~~g~  243 (483)
                         +.++..+.+.    .+.+.+..+.++.-.-.+..  ...+.++  -.||.    ..+.+....   +.....-..-.
T Consensus       109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn  188 (503)
T KOG2601|consen  109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN  188 (503)
T ss_pred             HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence               2222233332    13444444444333221211  1111111  12222    233444333   56666666778


Q ss_pred             HHHHhhHHHhhhccCchHHHHHHHHHHHH
Q 011529          244 VTGLAFSPFLIHRFGWPSVFYSFGSLGTV  272 (483)
Q Consensus       244 ~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  272 (483)
                      .+.|++.|.++...+-|..-.+.++-.++
T Consensus       189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  189 LLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             chhhhhhcccceeechhhhhhhhHHHHHH
Confidence            89999999999887777654444444444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=91.44  E-value=2.9  Score=34.54  Aligned_cols=86  Identities=13%  Similarity=-0.010  Sum_probs=44.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhh
Q 011529          362 FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLY  441 (483)
Q Consensus       362 ~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (483)
                      -.++......+..++.+.+.+++|.|         +.+.++.+...+........+ .+.++....+.+...+......-
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~~~~-~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFFYPN-SYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhHHhhHhhh
Confidence            34455566777888899999999977         344444444443333333333 33334333333333444444444


Q ss_pred             hhHhhhcc-Ccceeeee
Q 011529          442 SNHQDIAP-RYSVSIIS  457 (483)
Q Consensus       442 ~~~~~~~~-~~~g~~~g  457 (483)
                      .++.+... +.+++..+
T Consensus       112 ~ylt~~s~~~~~~~~~~  128 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTG  128 (156)
T ss_pred             HHHHHcCCHHHHhhHHH
Confidence            44444443 33454444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=90.97  E-value=18  Score=36.07  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             HHHHHHHhhhhhcchhHHHHHHhhhcC-CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 011529          198 LVVRVFMGIGEGVAMPAMNNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW  273 (483)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~  273 (483)
                      .+..++.|+.........-..+.+.+| +++|...+|-.+...++..++..++++.+.+.+||.....+.-++.++.
T Consensus       270 a~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       270 ALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            334556677777777777788888887 4678999999999888888777777799999999998877766665553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=90.22  E-value=0.33  Score=44.33  Aligned_cols=137  Identities=11%  Similarity=0.053  Sum_probs=81.7

Q ss_pred             HHHHHHHHhhhhhhhHHhhhh-hhhhcCCCh-hhHHHHHHHHHHHHHHHHhhHHHHHhhcCCch---HHH---HHHHHHH
Q 011529          109 CFSAFLLCNMDRVNMSIAILP-MSAEFNWNP-ATVGLIQSSFFWGYLLTQIAGGIWADTVGGKA---VLG---FGVVWWS  180 (483)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~---~~~---~~~~~~~  180 (483)
                      ++..++..++.+..+...+-. =.+.+..+. .|.-|....|.+|..+..     =+-|+=+-+   .+.   .-.+++.
T Consensus       256 L~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff  330 (409)
T KOG3880|consen  256 LALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFF  330 (409)
T ss_pred             HHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHH
Confidence            444455554444433332111 123344433 346677777777654322     111221111   111   1122223


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHH
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPF  252 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  252 (483)
                      +.-....+.+  ++|..++..+.-|+-.|..+....--+.+-.++++|..+++.....-++|..++..++-.
T Consensus       331 ~~~a~~~ftp--si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  331 LLQAWYWFTP--SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             HHHHHHHhcc--HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            3333445666  888888888888988788888777777777889999999999999999999888777643

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=89.99  E-value=0.093  Score=49.27  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHH
Q 011529          361 LFCVLPWLTMAFSANLGGWIA  381 (483)
Q Consensus       361 ~~~~~~~~~~~i~~~~~g~l~  381 (483)
                      ..+..++++-.+|+.+.++..
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~  206 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPR  206 (309)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHhcchhcceeE
Confidence            456678899999999888753

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.98  E-value=0.8  Score=44.39  Aligned_cols=127  Identities=14%  Similarity=-0.000  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhh
Q 011529          143 LIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW  222 (483)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  222 (483)
                      |-..++.+...+.+...-++.||+|-|+.+..+...+.++..+..+.+  +.+....-+-..|+-.+.....-...++..
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~--~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y  413 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVL--NTYVVLSHRSTAGILSSPLLTVPYGALALY  413 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhh--hHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence            455677788888999999999999977777766666667766666666  667777777777754444444433333322


Q ss_pred             cC-----------------------CcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc-hHHHHHHHHHHH
Q 011529          223 VP-----------------------VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW-PSVFYSFGSLGT  271 (483)
Q Consensus       223 ~~-----------------------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~-~~~~~~~~~~~~  271 (483)
                      .-                       ...+|...|+.+....+..++.....|.+.+.+|- +..-+..++..+
T Consensus       414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~  486 (498)
T KOG0637|consen  414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVAL  486 (498)
T ss_pred             HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHH
Confidence            11                       12236677778888888888888887888877663 333333333333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.82  E-value=6.5  Score=36.97  Aligned_cols=133  Identities=8%  Similarity=0.010  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhcCCch--HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHH
Q 011529          142 GLIQSSFFWGYLLTQIAGGIWADTVGGKA--VLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL  219 (483)
Q Consensus       142 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~  219 (483)
                      |..-++..+..+++.+..|.+--++.|..  .+.++.+..+...+.+...+  ++|..+++.++...-.....+.+..-+
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~--~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ--HIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc--ceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            55666777778888999999977776653  34445555555555555555  899999998888888888888888888


Q ss_pred             hhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-----------chHHHHHHHHHHHHHHHHHHH
Q 011529          220 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-----------WPSVFYSFGSLGTVWFTVWLS  279 (483)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----------~~~~~~~~~~~~~~~~~~~~~  279 (483)
                      ++....|.-|..+|+.....-+-..+   +.-...+.-|           +..-|.+.+.+.++.......
T Consensus       352 A~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGINTFVALILQSI---LTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             HHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence            88887888888888876654433322   2222333211           223456666666665544433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=89.68  E-value=3.4  Score=39.75  Aligned_cols=111  Identities=14%  Similarity=0.033  Sum_probs=75.2

Q ss_pred             hhhHHHHHHH-HHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhh-------cccHHHHHHHHHHHhhhhh
Q 011529          138 PATVGLIQSS-FFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAA-------KLGLPFLLVVRVFMGIGEG  209 (483)
Q Consensus       138 ~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~G~~~~  209 (483)
                      ....-.+..+ +.+...+|.+.+.++-++-.| . +.+..++-.+..-++.+++       ..+-+++++...+.|+..|
T Consensus       281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r-~-l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG  358 (406)
T KOG1479|consen  281 DWYALLLVFLSFNVFDLIGSILAALLTWPDPR-K-LTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG  358 (406)
T ss_pred             hhhHHHHHHHHhHHHHHhhhhhhhcccCCCCc-e-ehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence            4444555556 888888887777766654333 3 3333333333333332221       1155778888999999999


Q ss_pred             cchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhH
Q 011529          210 VAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS  250 (483)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  250 (483)
                      -.......+.++..+++++..+-.+.......|...|..++
T Consensus       359 Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  359 YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            88888899999999988888887778888888887777665

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.78  E-value=9.5  Score=34.52  Aligned_cols=137  Identities=12%  Similarity=0.031  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhcCCc--hHHHHHHHHHHHHHHHhhh----hhc-ccHHHHHHHHHHHhhhhhcchh
Q 011529          141 VGLIQSSFFWGYLLTQIAGGIWADTVGGK--AVLGFGVVWWSIATALTPV----AAK-LGLPFLLVVRVFMGIGEGVAMP  213 (483)
Q Consensus       141 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~~~l~G~~~~~~~~  213 (483)
                      -|++++.+++...+++-+..++..|-..|  ..+.+..++..+...+..+    ++. .+...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58899999999999999998888775543  3455555554444433222    121 1233345556666677789999


Q ss_pred             HHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 011529          214 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVW  277 (483)
Q Consensus       214 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  277 (483)
                      ....+=.+..|++.|...+.++..=.++-..++-..--.=....+-|..|-++.+...++.+..
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence            9999999999999999888886655444333221110000011345677777777666654433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=86.28  E-value=6.2  Score=39.06  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchH
Q 011529          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  261 (483)
                      +++.-++..+.....+.+..++-+++.+|.-=|+.|.+.+...++|+---..+.-++++.+.++.
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~  472 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT  472 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence            34446677777777888889999999999999999999999999998777666666777665543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=85.41  E-value=6.1  Score=41.29  Aligned_cols=51  Identities=18%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             HHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHH-hhc
Q 011529          337 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSK  387 (483)
Q Consensus       337 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~  387 (483)
                      ++++...+..|+.+.+|++...+..++..+....-+..+++|++.|++ |++
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~   54 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF   54 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            455666777888887999999888888888877888888999999986 444

>PRK03612 spermidine synthase; Provisional

Probab=84.94  E-value=11  Score=38.26  Aligned_cols=57  Identities=14%  Similarity=0.104  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 011529          327 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT  383 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr  383 (483)
                      .+..++..++.........-.+...+|.+....+.+.+++.++..+|+.+++++.++
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            333444445555555555556666678888888999999999999999888877643

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=84.17  E-value=19  Score=32.75  Aligned_cols=52  Identities=19%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhHHHHHHHhCCCc--chhhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011529          335 WGTFILLTWMPTYYNQVLHFNL--TESGLFCVLPWLTMAFSANLGGWIADTLVSK  387 (483)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~  387 (483)
                      ..........+.+..+ .+.+.  ...++..+...+...++.++.|++.||.|+|
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~   69 (338)
T COG0477          16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR   69 (338)
T ss_pred             HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch
Confidence            3334444556666666 44444  4678888888889999999999999999877

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=83.16  E-value=19  Score=32.39  Aligned_cols=49  Identities=4%  Similarity=-0.307  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHh----CCCcchhhHHhHHHHHHHHHHH
Q 011529          326 LIVSHFCHNWGTFILLTWMPTYYNQVL----HFNLTESGLFCVLPWLTMAFSA  374 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~i~~  374 (483)
                      +.+...+.....++....=..|++++.    +-+.....++++-+....+...
T Consensus       183 vG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt  235 (254)
T PF07857_consen  183 VGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTST  235 (254)
T ss_pred             HhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHH
Confidence            344444445555555544455666642    3344444445544433333333

The region concerned is approximately 280 residues long.

>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms []

Probab=81.33  E-value=43  Score=31.33  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=14.1

Q ss_pred             HHHHHHHHhhhhhcc-hhHHHHHHhhhcCCc
Q 011529          197 LLVVRVFMGIGEGVA-MPAMNNILSKWVPVA  226 (483)
Q Consensus       197 l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~  226 (483)
                      -.+...+.+++.|.. +....-++.+....+
T Consensus       263 ~~~~~~~~a~aaG~~lyv~~~ell~~~~~~~  293 (317)
T PF02535_consen  263 DIVSGILLAFAAGTFLYVAFVELLPEEFHNK  293 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344455556655544 333334555555433

; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	483
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-63
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	3e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  212 bits (541), Expect = 1e-63
 Identities = 58/364 (15%), Positives = 120/364 (32%), Gaps = 13/364 (3%)

Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
           RW I +  F  +    + R N ++A+ P   E  ++   +G   S     Y  ++   G 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 162 WADTVGGKAVLGFGVVWWSIATALTPVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNIL 219
            +D    +  L  G++  +               +  + V+    G  +G+  P     +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             W    ER   +++      +G  +  L F   +     W +  Y       +      
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204

Query: 279 SKAHSSPAEDPQLRPAEKKLI-----VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 333
           +    +P         E K             +   K I    +L    +W + +++   
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 264

Query: 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 393
               + +L W PTY  +V HF L +S     L          L GW++D +       T 
Sbjct: 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324

Query: 394 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSV 453
           V      +  +  A  +  ++   +P + ++CM             +  +  ++AP+ + 
Sbjct: 325 VFF----MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 380

Query: 454 SIIS 457
              +
Sbjct: 381 GTAA 384

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 42/333 (12%), Positives = 95/333 (28%), Gaps = 40/333 (12%)

Query: 126 AILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 185
           AI  M+ + N     V  +  ++   Y ++Q+  G  +D VG + V+  G+  + +AT +
Sbjct: 22  AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81

Query: 186 TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVT 245
               +   L  L+      G+G GV       +        +   + +L+  G+ +  + 
Sbjct: 82  AVTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139

Query: 246 GLAFSPFLIHRFGWPSVFYS---FGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSS 302
                  L   + W + +       +  T     W+          P+ RP +       
Sbjct: 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWM----------PETRPVDAPR---- 185

Query: 303 CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF 362
                 + +  +  +         ++       G              VL  +     + 
Sbjct: 186 ---TRLLTS--YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL 240

Query: 363 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL---GPAFFLTQLSHVDSP 419
                    F   +         +   +      + QS+      G   ++     V + 
Sbjct: 241 ---------FILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNV 291

Query: 420 AMAVLCMACSQGTDAF----SQSGLYSNHQDIA 448
              ++  A            + SG       +A
Sbjct: 292 WTLLVPAALFFFGAGMLFPLATSGAMEPFPFLA 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 75/536 (13%), Positives = 142/536 (26%), Gaps = 150/536 (27%)

Query: 9   SPILQSPPYISARNKLSRA--ELRPRGLPRLLLGVLSGDRVCSFRVSVRDVKSESYNV-- 64
            P + +  YI  R++L           + RL             R ++ +++     +  
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPAKNVLID 156

Query: 65  ----SEKSVKFEEALKDIALRSE-DLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNM- 118
               S K+    +      ++ + D  +           F   W  +  C S   +  M 
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKI-----------F---WLNLKNCNSPETVLEML 202

Query: 119 ------------DRVNMSIAILPMSAE---------FNWNPATVGLI-----QSSFFWGY 152
                        R + S  I  +                P    L+     Q++  W  
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 153 -------LLTQIAGGIWADTVGGKAVLGFGVV-----------------WWSIATALTPV 188
                  LLT     +  D +         +                  +        P 
Sbjct: 262 FNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 189 AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKW--VPVAERSRSLALVYSGMYLGSVTG 246
                 P  L +     I E  ++         W  V   + +  +          S+  
Sbjct: 321 EVLTTNPRRLSI-----IAE--SIRDGLATWDNWKHVNCDKLTTIIES--------SLNV 365

Query: 247 LAFSPFLI-HRFGWPSVF-----YSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIV 300
           L   P      F   SVF          L  +WF             D  +     KL  
Sbjct: 366 L--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWF--------DVIKSDVMV--VVNKLHK 413

Query: 301 SSCASKEPVK---TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT 357
            S   K+P +   +IP   +  K  +      H      + +       +YN    F+  
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIV------DHYNIPKTFDSD 462

Query: 358 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 417
           +     + P+L   F +++G  + +  +     +T  R +     FL       ++ H  
Sbjct: 463 D----LIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLE-----QKIRHDS 511

Query: 418 SPAMAVLCMACSQGTDAFSQSGLYSNH-QDIAPRYSVSIISI-NILRAPGSHCILC 471
           +        A     +   Q   Y  +  D  P+Y   + +I + L     + I  
Sbjct: 512 TA-----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 103 WFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIW 162
                L  S F L  +      I +      F       GLIQS+F++GY +  I  GI 
Sbjct: 25  IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84

Query: 163 ADTVGGKAVLGFGVVWWSIATALTPVAAKLG-LPFLLVVRVFMGIGEGVAMPAMNNILSK 221
              +  KA +  G+  +++  AL   AA++      LV    +  G G    A N  ++ 
Sbjct: 85  MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144

Query: 222 WVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI 254
             P +     L L  +    G++  + F   LI
Sbjct: 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	483
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.91
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.67
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.49
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.44
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.35
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.18
2xut_A	524	Proton/peptide symporter family protein; transport	98.85

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.8e-33  Score=277.67  Aligned_cols=336  Identities=14%  Similarity=0.147  Sum_probs=263.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHH
Q 011529          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (483)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  180 (483)
                      +++..+..+++..++.+++.....+.+|.+.+++|.+..++|++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            34556667777888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh---hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhh-hc
Q 011529          181 IATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HR  256 (483)
Q Consensus       181 ~~~~~~---~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~  256 (483)
                      ++.+++   .+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+. +.
T Consensus       103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999988   7778  99999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             cC-------------------------chHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCCChhhHHHhhhcccCCCCCc
Q 011529          257 FG-------------------------WPSVFYSFGSLGTVWFTVWLSKA-HSSPAEDPQLRPAEKKLIVSSCASKEPVK  310 (483)
Q Consensus       257 ~g-------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (483)
                      .+                         ||+.|++.+++.++..++.++.. |+.+++.++.+             +++..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------------~~~~~  247 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-------------KQGSF  247 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-------------STTSH
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-------------cccch
Confidence            54                         99999888777766655554432 22221111110             11112


Q ss_pred             ccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011529          311 TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY-YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL  389 (483)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~  389 (483)
                      ..++++++|+|.++...+..++..........++|.| +++.+|++..+.+.+.+...++.++++++.+++.||+++|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  327 (438)
T 3o7q_A          248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3457788999999999999999998899999999999 888779999999999999999999999999999999998842


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeeeec
Q 011529          390 SVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISINIL  461 (483)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  461 (483)
                               ...+.++....+......+.....+....++ .+.....+.......+..|++++.+.++...
T Consensus       328 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (438)
T 3o7q_A          328 ---------LAAYALIAMALCLISAFAGGHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM  389 (438)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGGHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhhHHHH
Confidence                     2222222222233333334444333333333 3334445666777666666667766664443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.6e-33  Score=279.10  Aligned_cols=349  Identities=15%  Similarity=0.199  Sum_probs=267.9

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      +.++..+..+++..+...++...+.+.+|.+.+++ .+..++|++.+++.++..++++++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            34567778888888999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh----hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh
Q 011529          180 SIATALTPV----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (483)
Q Consensus       180 ~~~~~~~~~----~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (483)
                      +++.+++++    ++  +++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus       103 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998    77  899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccC-chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHH-----HhhhcccCCCCCcccchhhhhcChhHHHHHHH
Q 011529          256 RFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK-----LIVSSCASKEPVKTIPWGLILSKPPVWALIVS  329 (483)
Q Consensus       256 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (483)
                      ..| ||+.|++.+++.++..++.++..++++++.+..+.++.+     ...+..+++...+....++++++|.++...+.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA  260 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence            898 999999999888877776666666654432211111000     00000000111111124677899999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHH--hhcCCchhHHHHHHHHHHHHHHH
Q 011529          330 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL--VSKGLSVTTVRKIMQSIGFLGPA  407 (483)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--g~~~~~~~~~~~~~~~~~~~~~~  407 (483)
                      .++.......+..++|.|+++.+|+++.+.+++.+...++.+++.++.+++.||+  ++|+        .......+...
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--------~~~~~~~~~~~  332 (451)
T 1pw4_A          261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--------ATGVFFMTLVT  332 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--------hHHHHHHHHHH
Confidence            9999999999999999999998899999999999999999999999999999998  7662        12222222221


Q ss_pred             HHHHHhhcc--chhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          408 FFLTQLSHV--DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       408 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      ..+......  .+.+.......+.+.......+.......+..| +.+|+++|+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  387 (451)
T 1pw4_A          333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT  387 (451)
T ss_dssp             HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence            222222222  233333333333333333444555666777665 4588888754

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=7e-32  Score=260.80  Aligned_cols=326  Identities=13%  Similarity=0.112  Sum_probs=258.8

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (483)
                      ..+++..++..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            44566777788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                      .+.+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++.+..+||+.|++.
T Consensus        83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            9988  99999999999999999999999999999999999999999999999999999999999999988999999988


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 011529          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (483)
                      +++.++..+......|++++++++.                ++...++++++|+|.++...+..++.......+..+.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV  224 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776654444444433221111                111334667889999999999999999999999999999


Q ss_pred             HHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH-HHHHHH--HHHhhccchhHHHH
Q 011529          347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFF--LTQLSHVDSPAMAV  423 (483)
Q Consensus       347 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~  423 (483)
                      |+++.+|.++.+.+.+.+...++.+++.++.+++.||++++         ....... ......  .......++.+...
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLL  295 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHH
Confidence            99998899999999999999999999999999999998863         1111111 111111  11111112333333


Q ss_pred             HHHHHhhhhhhhhhchhhhhHhhhccCcceeeeeee
Q 011529          424 LCMACSQGTDAFSQSGLYSNHQDIAPRYSVSIISIN  459 (483)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  459 (483)
                      ....+.+...+...+.......+..|+++|++.|+.
T Consensus       296 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~  331 (375)
T 2gfp_A          296 VPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALV  331 (375)
T ss_dssp             HHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHH
Confidence            333333344445566677777777778888888744

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=1.8e-27  Score=238.38  Aligned_cols=346  Identities=14%  Similarity=0.107  Sum_probs=232.2

Q ss_pred             HHHHHHHHHhhhhhhhHHhhhh-hhhh-----cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh-cCCchHHHHHHHHHH
Q 011529          108 LCFSAFLLCNMDRVNMSIAILP-MSAE-----FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWS  180 (483)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~  180 (483)
                      .+++..+...+........++. +.++     +|.+..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~   96 (491)
T 4aps_A           17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM   96 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            3334444444444444444444 5555     99999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcc--hhHHHHHHHHHHHhHHHHHHhhHHHhhhccC
Q 011529          181 IATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFG  258 (483)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  258 (483)
                      ++.+++++++  +++.+++.|++.|++.+...+...+++.|++|+++  |+.++++.+...++|..++|.+++.+.+..|
T Consensus        97 ~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A           97 LGHIVLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999988  99999999999999999999999999999999988  7788888999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCC----C-CCChhhHHHhhhc------------------ccCC---------
Q 011529          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAED----P-QLRPAEKKLIVSS------------------CASK---------  306 (483)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~------------------~~~~---------  306 (483)
                      |++.|++.++..++..+..+...++..++.    + +.++++.+...+.                  .+..         
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (491)
T 4aps_A          175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLT  254 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhh
Confidence            999999988777766655554433321111    1 1111111110000                  0000         


Q ss_pred             --------------CCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHH
Q 011529          307 --------------EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF  372 (483)
Q Consensus       307 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i  372 (483)
                                    .+.+........+....+...+..++..........+++.|.++..+.+....+.+.....++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (491)
T 4aps_A          255 IVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIML  334 (491)
T ss_dssp             HHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHH
Confidence                          000000011111223345555555666666666778888999987888878888999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhc---------cchhHHHHHHHHHhhhhhhhhhchhhhh
Q 011529          373 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH---------VDSPAMAVLCMACSQGTDAFSQSGLYSN  443 (483)
Q Consensus       373 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (483)
                      +.++.+++.||+++|+.....    .+..+.++....+.....         ....+..+....+.+.......+.....
T Consensus       335 ~~~~~~~l~~r~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  410 (491)
T 4aps_A          335 YTPFFAWLWTAWKKNQPSSPT----KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSV  410 (491)
T ss_dssp             HHHHHHHHHHHTTTC---CHH----HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCchH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999988643311    111222222222111111         1133333333333333344445556667


Q ss_pred             Hhhhcc-Ccceeeeeee
Q 011529          444 HQDIAP-RYSVSIISIN  459 (483)
Q Consensus       444 ~~~~~~-~~~g~~~g~~  459 (483)
                      ..+..| +.+|.+.|+.
T Consensus       411 ~~~~~p~~~~g~~~g~~  427 (491)
T 4aps_A          411 TTKLAPKAFNSQMMSMW  427 (491)
T ss_dssp             HHHHTTTTCSSSSTHHH
T ss_pred             HHHhCCHHHHHHHHHHH
Confidence            777665 5588888744

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=1.7e-26  Score=231.22  Aligned_cols=350  Identities=14%  Similarity=0.119  Sum_probs=225.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCC--------ChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHH
Q 011529          102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW--------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG  173 (483)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  173 (483)
                      .+.+..+..++.++.++|...++..+|.+.++++.        +..+.|++.+++.++..++++++|+++||+|||+++.
T Consensus        10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~   89 (491)
T 4gc0_A           10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34444555677788889999999888888877642        3456789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh------------------hhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHH
Q 011529          174 FGVVWWSIATALTPV------------------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALV  235 (483)
Q Consensus       174 ~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  235 (483)
                      ++.+++.++.+++++                  ++  +++.++++|+++|++.|...+....++.|+.|+++|++..++.
T Consensus        90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            999999999988774                  56  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHhhHHHhhhc--------cCchHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCChhhHHH-h------
Q 011529          236 YSGMYLGSVTGLAFSPFLIHR--------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQLRPAEKKL-I------  299 (483)
Q Consensus       236 ~~~~~~g~~~g~~~~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~------  299 (483)
                      +.+..+|.++++.++..+...        .+|+..+.+..+..++.. ......||.|+.. .+.+.++... .      
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            999999999999888776543        235655555554444433 3344455554310 0011110000 0      


Q ss_pred             -------hhcc-cCCCCCcccchhhhhcChhHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHH
Q 011529          300 -------VSSC-ASKEPVKTIPWGLILSKPPVWALIVS-HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTM  370 (483)
Q Consensus       300 -------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  370 (483)
                             .+.. ...+..+.......++.+........ .+......+.+..+.+.+.++ .+.+.........+.++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  325 (491)
T 4gc0_A          247 TLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVIN  325 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHH
Confidence                   0000 00000001112223334444333333 333334455556666666665 7888877777778888999


Q ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-
Q 011529          371 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-  449 (483)
Q Consensus       371 ~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  449 (483)
                      +++.++.+++.||+|||+......    ....+....+........+.....+.......+......+..+.+..|..| 
T Consensus       326 ~~~~~~~~~l~dr~Grr~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt  401 (491)
T 4gc0_A          326 LTFTVLAIMTVDKFGRKPLQIIGA----LGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN  401 (491)
T ss_dssp             HHHHHHHHHHHHHHCSHHHHHHHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred             HHHHHHHHHHHHhhcCcchhccch----HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence            999999999999999985332221    011111111111112222222222222222333333334556677888877 


Q ss_pred             Ccceeeeeee
Q 011529          450 RYSVSIISIN  459 (483)
Q Consensus       450 ~~~g~~~g~~  459 (483)
                      +.|+++.|+.
T Consensus       402 ~~R~~~~g~~  411 (491)
T 4gc0_A          402 AIRGKALAIA  411 (491)
T ss_dssp             TTHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            4577777644

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.91  E-value=3e-24  Score=210.10  Aligned_cols=327  Identities=12%  Similarity=0.037  Sum_probs=197.8

Q ss_pred             HHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHH---Hhh
Q 011529          112 AFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATA---LTP  187 (483)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~---~~~  187 (483)
                      ..++.........+.+|. +.+++|.++.+.|++.+++.++..++++++|+++||+|||+++.++.++.+++..   ...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T 2cfq_A           15 FFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555667777 5566999999999999999999999999999999999999999988877654321   112


Q ss_pred             hhhcccH-HHHHHHHHHHhhhhhcchhHHHHHHhhhcCC--cchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHH
Q 011529          188 VAAKLGL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY  264 (483)
Q Consensus       188 ~~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  264 (483)
                      +.+  .. ..++..+++.|++.+...+.....+.++.++  ++++..++..+....+|..++|.+++++.+ .+|++.|+
T Consensus        95 ~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~  171 (417)
T 2cfq_A           95 FGP--LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFW  171 (417)
T ss_dssp             HHH--HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHT
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHH
Confidence            222  11 1123445555555544444434444444432  456777888888899999999999999987 58999998


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHHHHHhh
Q 011529          265 SFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM  344 (483)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (483)
                      +.++..++..+..+...+++++..++ ++  ++     .++.++....++++++++|.++...+..+.....+..+..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (417)
T 2cfq_A          172 LGSGCALILAVLLFFAKTDAPSSATV-AN--AV-----GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF  243 (417)
T ss_dssp             TTTTTTTTHHHHSCSSCCCCSCSSCS-SS--SS-----SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCccccccccc-cc--cc-----ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            77666544433333333332111100 00  00     000011112245667889998877776666555666666778


Q ss_pred             HHHHHHHhCC---CcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 011529          345 PTYYNQVLHF---NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM  421 (483)
Q Consensus       345 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (483)
                      |.|+.+.++.   +....++..++..++.+++.++.+++.||+++|+.         +..+..+.+..+......++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~---------l~~~~~~~~~~~~~~~~~~~~~~  314 (417)
T 2cfq_A          244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA---------LLLAGTIMSVRIIGSSFATSALE  314 (417)
T ss_dssp             HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH---------HHHHHHHHHHHHHHHTTCCSHHH
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH---------HHHHHHHHHHHHHHHHHhccHHH
Confidence            9888775442   23445777777788889999999999999998842         22222222232333333333333


Q ss_pred             HHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeee
Q 011529          422 AVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISI  458 (483)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~  458 (483)
                      .++...+.........+.......+..| +.+|++.+.
T Consensus       315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  352 (417)
T 2cfq_A          315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV  352 (417)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3322222222222233334566667655 457777664

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=3.7e-22  Score=201.45  Aligned_cols=168  Identities=16%  Similarity=0.190  Sum_probs=142.6

Q ss_pred             HHHHHHhhhhhhhHHhhhh-hhhhcC------CChhhHHHHHHHHHHHHHHHHhhHHHHHhhc-CCchHHHHHHHHHHHH
Q 011529          111 SAFLLCNMDRVNMSIAILP-MSAEFN------WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIA  182 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~  182 (483)
                      +..++..+........++. +.+++|      .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~   98 (524)
T 2xut_A           19 ASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVG   98 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3344444444444445554 677889      9999999999999999999999999999999 9999999999999999


Q ss_pred             HHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHH---HHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      .+++.+++. +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   .+...++|..++|.+++.+.+..||
T Consensus        99 ~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (524)
T 2xut_A           99 HAFLAIFEH-SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA  177 (524)
T ss_dssp             HHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            888877641 688899999999999999999999999999999999776666   9999999999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLS  279 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~  279 (483)
                      ++.|++.+++.++..+..+.
T Consensus       178 ~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          178 AVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988887766555544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.67  E-value=9.7e-16  Score=151.17  Aligned_cols=175  Identities=13%  Similarity=0.059  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhhhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhc--CCchHHHHHHHHHH-HH
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGFGVVWWS-IA  182 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~~  182 (483)
                      ..+.+..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+..+.++.. ++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  334 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  334 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            334444445555555566677776655 899999999999999999999999999999999  99999888877766 66


Q ss_pred             HHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHh-HHHHHHhhHHHhhhccCchH
Q 011529          183 TALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~~  261 (483)
                      .+++.+.+..+.+.+.+..++.|++.+...+...+++.|.+|+++|++++|+.+....+ |..++|.+.|.+.+..||+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  414 (451)
T 1pw4_A          335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG  414 (451)
T ss_dssp             HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            66666664336777888888999998888888899999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 011529          262 VFYSFGSLGTVWFTVWLSKA  281 (483)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~  281 (483)
                      .|++.+++.++..++.+...
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          415 GFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99998888877766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=3e-13  Score=132.79  Aligned_cols=156  Identities=10%  Similarity=0.008  Sum_probs=126.3

Q ss_pred             HHHhhhhhhhHHhhhhh-hhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhc
Q 011529          114 LLCNMDRVNMSIAILPM-SAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK  191 (483)
Q Consensus       114 ~~~~~~~~~~~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  191 (483)
                      ++...........+|.+ .++ +|.+..+.+++.+...++..++.++.|++.||+|||+++..+.++..++.++..+.+ 
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-  346 (438)
T 3o7q_A          268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-  346 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-
Confidence            33334444455555555 544 599999999999999999999999999999999999999999999988888877776 


Q ss_pred             ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccC-chHHHHHHHHHH
Q 011529          192 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLG  270 (483)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~  270 (483)
                       +.+.+ +..++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.++..
T Consensus       347 -~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  422 (438)
T 3o7q_A          347 -GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_dssp             -HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred             -CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence             55444 3448888999999999999999999755 888888877 677999999999999999988 999888766555


Q ss_pred             HHHH
Q 011529          271 TVWF  274 (483)
Q Consensus       271 ~~~~  274 (483)
                      ++..
T Consensus       423 ~~~~  426 (438)
T 3o7q_A          423 AVIF  426 (438)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.49  E-value=3e-13  Score=131.92  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=122.4

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhhhhhcchhHHH
Q 011529          137 NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMN  216 (483)
Q Consensus       137 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~  216 (483)
                      +....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++..+.+  +.+.+++..++.+++.+...+...
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~  334 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888889999999999999999999999988888888777777766  777777788888888777777778


Q ss_pred             HHHhhhcCCcchhHHHHH-HHHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccC
Q 011529          217 NILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       217 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      .++.|.+|++.|+++.++ .+....+|..++|.++|++.+..|++..|.+.+++.++..++.+...++
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            999999999999999999 5888899999999999999998889889988888877776665554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.44  E-value=1.3e-12  Score=130.21  Aligned_cols=180  Identities=13%  Similarity=0.012  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 011529          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (483)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  186 (483)
                      .......+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          280 IGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence            33344444445555556666778888888888888888888889999999999999999999999998888887776655


Q ss_pred             hhhh--cccHHHHHHHHHHH-hhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhh------cc
Q 011529          187 PVAA--KLGLPFLLVVRVFM-GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RF  257 (483)
Q Consensus       187 ~~~~--~~~~~~l~~~~~l~-G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~  257 (483)
                      ....  ..+.+..++..++. +.......+....+.+|.+|.+.|++++|+......++..+++.+.+.+.+      ..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~  439 (491)
T 4gc0_A          360 GTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF  439 (491)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4322  11222222222222 222233456778899999999999999999999999999999888776643      34


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 011529          258 GWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (483)
Q Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (483)
                      ++...|++.++++++..+..+++.||++.
T Consensus       440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          440 HNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            56678888888888888888888887644

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.35  E-value=5.4e-12  Score=125.78  Aligned_cols=163  Identities=14%  Similarity=0.063  Sum_probs=125.4

Q ss_pred             hhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHH-----HHHHHHHHHHHHhhhhh---
Q 011529          120 RVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-----FGVVWWSIATALTPVAA---  190 (483)
Q Consensus       120 ~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~~---  190 (483)
                      .......++. ..+.++.+..+.+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..   
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (491)
T 4aps_A          299 EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY  378 (491)
T ss_dssp             HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred             HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444555 34446777677888888899999999999999999999986644     77777777776665532   


Q ss_pred             ----cccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchHHHHHH
Q 011529          191 ----KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (483)
Q Consensus       191 ----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  266 (483)
                          ..+.+.+++..++.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+ .++...|.+.
T Consensus       379 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~  457 (491)
T 4aps_A          379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYF  457 (491)
T ss_dssp             CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHT
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence                12567778888999999999899999999999999999999999999999999999999888776 4677788888


Q ss_pred             HHHHHHHHHHHHHhccC
Q 011529          267 GSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       267 ~~~~~~~~~~~~~~~~~  283 (483)
                      +++.++..+..+...++
T Consensus       458 ~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          458 GLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            87777776666655444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.18  E-value=2.1e-11  Score=116.96  Aligned_cols=159  Identities=11%  Similarity=-0.047  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhhhhhh-cCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH-HHHHH
Q 011529          106 VVLCFSAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIAT  183 (483)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~  183 (483)
                      +....+..++.......+....|.+.++ +|.++.+.+++.+...++..++.++.+++.||++++  +..+..+ ...+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~  278 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGL  278 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            3334444445555555666677775554 899999999999999999999999999999999873  2333332 22222


Q ss_pred             HH--hhhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCchH
Q 011529          184 AL--TPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPS  261 (483)
Q Consensus       184 ~~--~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  261 (483)
                      .+  .......+.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+.+....+|..++|.+.+.+.+..+++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  357 (375)
T 2gfp_A          279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL  357 (375)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred             HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence            21  122111156677788889999999999999999999997 899999999999999999999999999988777777


Q ss_pred             HHHHHH
Q 011529          262 VFYSFG  267 (483)
Q Consensus       262 ~~~~~~  267 (483)
                      .+.+.+
T Consensus       358 ~~~~~~  363 (375)
T 2gfp_A          358 GLLMTL  363 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.85  E-value=4.6e-09  Score=105.43  Aligned_cols=144  Identities=11%  Similarity=0.059  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHH----hhcCC----chHHHHHHHHHHHHHHHhhhhh-------cccHHHHHHHHHHH
Q 011529          140 TVGLIQSSFFWGYLLTQIAGGIWA----DTVGG----KAVLGFGVVWWSIATALTPVAA-------KLGLPFLLVVRVFM  204 (483)
Q Consensus       140 ~~g~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~  204 (483)
                      ..+++.....++..+..++.+++.    ||.|+    ++.+.++.++.+++.++..+..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666667777777777764    55543    3456777788888777766532       12567778888999


Q ss_pred             hhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhcc--Cc---------hHHHHHHHHHHHHH
Q 011529          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GW---------PSVFYSFGSLGTVW  273 (483)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~---------~~~~~~~~~~~~~~  273 (483)
                      |++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..  +|         +..|++.+.+.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988732  13         33366666666666


Q ss_pred             HHHHHHhccC
Q 011529          274 FTVWLSKAHS  283 (483)
Q Consensus       274 ~~~~~~~~~~  283 (483)
                      .++.+...++
T Consensus       496 ~~~~~~~~~~  505 (524)
T 2xut_A          496 AIVFALYARS  505 (524)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHHH
Confidence            5555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	483
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-26
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-08
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (270), Expect = 3e-26
 Identities = 58/364 (15%), Positives = 123/364 (33%), Gaps = 13/364 (3%)

Query: 102 RWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGI 161
           RW I +  F  +    + R N ++A +P   E  ++   +G   S     Y  ++   G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 162 WADTVGGKAVLGFGVVWWSIATALTPV--AAKLGLPFLLVVRVFMGIGEGVAMPAMNNIL 219
            +D    +  L  G++  +           A   +  + V+    G  +G+  P     +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 220 SKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             W    ER   +++      +G  +  L F   +     W +  Y       +      
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 279 SKAHSSPAEDPQLRPAEKKLIVSSCASKE-----PVKTIPWGLILSKPPVWALIVSHFCH 333
           +    +P         E K       +++       K I    +L    +W + +++   
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 334 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 393
               + +L W PTY  +V HF L +S     L          L GW++D +       T 
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT- 320

Query: 394 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSV 453
               +  +  +  A  +  ++   +P + ++CM             +  +  ++AP+ + 
Sbjct: 321 ---GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377

Query: 454 SIIS 457
              +
Sbjct: 378 GTAA 381

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 22/213 (10%), Positives = 59/213 (27%), Gaps = 4/213 (1%)

Query: 70  KFEEALKDIALRSEDLGVDSESLVPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILP 129
             E         +E    +  +   + +       +  +  +   +  +    +  +   
Sbjct: 216 IEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 275

Query: 130 MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS---IATALT 186
           +    ++           + +  +   +  G  +D V        GV + +   IAT + 
Sbjct: 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335

Query: 187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVT 245
            +         ++  + +G      +  +     +  P      +        YL GSV 
Sbjct: 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395

Query: 246 GLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL 278
             A   + +  FGW   F        +   + +
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 28/273 (10%), Positives = 69/273 (25%), Gaps = 2/273 (0%)

Query: 107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV 166
           +     F    +         + +    + + +  G+I ++     LL Q   G+ +D +
Sbjct: 11  MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 167 GGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVA 226
           G +  L + +    +  A   +     L    ++   +  G  +         +    + 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 227 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 286
           + SR     +    +    G A    ++      +  + F         + +    +   
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 287 EDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 346
                  A       S  S +    +     L    ++ + V   C             T
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGV--SCTYDVFDQQFANFFT 248

Query: 347 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGW 379
            +           G    +  L  A        
Sbjct: 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPL 281

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 16/187 (8%), Positives = 46/187 (24%), Gaps = 3/187 (1%)

Query: 93  VPWWEEFPKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGY 152
                  PK WF+ +         ++     +       A         G + +      
Sbjct: 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN 272

Query: 153 LLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM 212
                   +  + +GGK  L       S+    +  A         +++          +
Sbjct: 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV--ILKTLHMFEVPFLL 330

Query: 213 PAMNNILSKWVPVAERSRSLALVYS-GMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 271
                 ++    V   +    + +     L  +     +  +    G+   +   G +  
Sbjct: 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390

Query: 272 VWFTVWL 278
            +  + +
Sbjct: 391 GFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	483
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.88
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.62
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.57

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-32  Score=267.45  Aligned_cols=355  Identities=15%  Similarity=0.196  Sum_probs=266.7

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHH
Q 011529          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (483)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  179 (483)
                      +.+|.++..++++++..+++...++...|.+. ++|+|..++|++.+++.++..++++++|+++||+|||+++.++.++.
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   99 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA   99 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            45788888888888888888888888888775 58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhc--ccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHhhHHHhhhc-
Q 011529          180 SIATALTPVAAK--LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-  256 (483)
Q Consensus       180 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-  256 (483)
                      +++.+++++.+.  .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+... 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            999888776531  26789999999999999999999999999999999999999999999999999999998887765 


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhH-----HHhhhcccCCCCCcccchhhhhcChhHHHHHHHHH
Q 011529          257 FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEK-----KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF  331 (483)
Q Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (483)
                      .+|++.|++.+++.++..++.+...++++++......++.     +...+..+.+...+....+..++++.++......+
T Consensus       180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (447)
T d1pw4a_         180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV  259 (447)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence            4799999999888888777777777666554332211111     11111111222223344567788999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 011529          332 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT  411 (483)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (483)
                      +.....+....+.|.|+.+.++++..+.+.......++.+++.++.|++.||+++++.....    .....+........
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  335 (447)
T d1pw4a_         260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG----VFFMTLVTIATIVY  335 (447)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH----HHHHHHHHHHHHHT
T ss_pred             hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc----chhHHHHHHHHHHH
Confidence            99999999999999999998999999999999999999999999999999999887522111    11111112222222


Q ss_pred             HhhccchhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeeee
Q 011529          412 QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISIN  459 (483)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  459 (483)
                      ......+.+..++...+.+.......+.......+..| +.+|++.|+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  384 (447)
T d1pw4a_         336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT  384 (447)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            22223334444443333333334444555666667665 4578888753

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.9e-21  Score=183.15  Aligned_cols=336  Identities=11%  Similarity=-0.002  Sum_probs=212.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHH
Q 011529          105 IVVLCFSAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT  183 (483)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  183 (483)
                      .++.+.+.+++..+......+.+|. +.+++|.|+.++|++.+++.++..++++++|+++||+|||++++++..+..++.
T Consensus         8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   87 (417)
T d1pv7a_           8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF   87 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3444555666666777777888887 667799999999999999999999999999999999999999999998888888


Q ss_pred             HHhhhhhcc--cHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCC--cchhHHHHHHHHHHHhHHHHHHhhHHHhhhccCc
Q 011529          184 ALTPVAAKL--GLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW  259 (483)
Q Consensus       184 ~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  259 (483)
                      .+..+....  .....++.+.+.+.+.+...........+..++  +++....+........+..++|.+++.+.+. +|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  166 (417)
T d1pv7a_          88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NN  166 (417)
T ss_dssp             HHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cc
Confidence            777665511  122234555555555555555544444443332  3455677788888899999999999988875 55


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCChhhHHHhhhcccCCCCCcccchhhhhcChhHHHHHHHHHHHHHHHHH
Q 011529          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFI  339 (483)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (483)
                      +..+........+..+......++.+...++.+++++        ..++..........+++..+...............
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T d1pv7a_         167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS--------CCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh--------hcccccccccccccccccccchhhhhHHHHHHHHh
Confidence            5666666655555555555555554433332211111        11111122233445555555555444444444444


Q ss_pred             HHHhhHHHHHHH---hCCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011529          340 LLTWMPTYYNQV---LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV  416 (483)
Q Consensus       340 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (483)
                      .....+.+....   .+.+....+.......++..++..+.+++.||.++++         ....+.++...........
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~---------~~~~~~~~~~~~~~~~~~~  309 (417)
T d1pv7a_         239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN---------ALLLAGTIMSVRIIGSSFA  309 (417)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH---------HHHHHHHHHHHHHHHHHTC
T ss_pred             hhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc---------chhhhHHHHHHhhhccccc
Confidence            444444433321   2334455667777788888999999999999999773         2333333344444444445


Q ss_pred             chhHHHHHHHHHhhhhhhhhhchhhhhHhhhcc-Ccceeeeee
Q 011529          417 DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSVSIISI  458 (483)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~  458 (483)
                      ++.+..++...+.+...+...+.......+..| +.+|++.|.
T Consensus       310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (417)
T d1pv7a_         310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV  352 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence            555555555555555555556667777777655 568888774

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.2e-15  Score=145.47  Aligned_cols=157  Identities=8%  Similarity=-0.004  Sum_probs=138.2

Q ss_pred             HhhhhhhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q 011529          125 IAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFM  204 (483)
Q Consensus       125 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (483)
                      .......++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++..++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~  322 (417)
T d1pv7a_         245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLH  322 (417)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHHHH
Confidence            334445555666778888999999999999999999999999999999999999999999988888  899999999999


Q ss_pred             hhhhhcchhHHHHHHhhhcCCcchhHHHHHH-HHHHHhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHHhccC
Q 011529          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALV-YSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHS  283 (483)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (483)
                      |++.+...+...+++.|.+|+++|++..++. +....+|..++|.+.|++.++.|++..|++.+++.++..++..+..++
T Consensus       323 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999985 556779999999999999999999999999998888777766666554

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.7e-14  Score=139.49  Aligned_cols=171  Identities=13%  Similarity=0.052  Sum_probs=128.4

Q ss_pred             HHHHHHhhhhhhhHHhhhh-hhhhcCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHH---HHHHHHHh
Q 011529          111 SAFLLCNMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW---WSIATALT  186 (483)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~---~~~~~~~~  186 (483)
                      ...++............|. +.+.++.+..+.++......++..++.++.|++.||++|++........   ..++....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (447)
T d1pw4a_         256 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  335 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHH
Confidence            3333333333444444554 6677899999999999999999999999999999999987644333322   22223333


Q ss_pred             hhhhcccHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCCcchhHHHHHHHHHHHh-HHHHHHhhHHHhhhccCchHHHHH
Q 011529          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFYS  265 (483)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~~~~~~  265 (483)
                      ......+.+..+++.++.|++.+...+....+..|.+|++.|+++.|+.+....+ |.+++|.+.|++.+..||+..|++
T Consensus       336 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~  415 (447)
T d1pw4a_         336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  415 (447)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            3332236777888888899988888888999999999999999999999888777 567789999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhc
Q 011529          266 FGSLGTVWFTVWLSKA  281 (483)
Q Consensus       266 ~~~~~~~~~~~~~~~~  281 (483)
                      .+...++..++.....
T Consensus       416 ~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         416 MIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8777776665555443