Citrus Sinensis ID: 011540

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MDHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSASH
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccEEcccHHHHHHHHHccccEEEcccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHcccccccccEEEEcccccccccccHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEEHHHHHHcc
ccccEEEEEccccccccccccccHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccHHHHHcccccHcccHHHHHHccccccccccccccccEEEEEEEEEcccccHcHEEEEccccccccEEEccccccEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEccHHHHHcHHccccEEEccccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHccccccccccccHHHccHHHHHHHHHHHHHHHcccccEEEEEEcccHEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEHHHHHHcc
mdhsissrslsrspspsispfnskrmilnpvfhkfnfdsrnfeikplvsrqnrpVVVAVRSsnqkvhndgfvledvphltnflpdlpsypnplkksqaYAVVKQtfvspedavaqniviqkdsprgvhfrragprekvyfksDEVRACIVtcgglcpginTVIREIVCGLSYmygvdeilgieggyrgfyskntltlspkvVNDIHkrggtilrtsrgghdtnkivdniedrginqvyiiggdgtQKGAALIYKEVEKRGLQVavagipktidndiavIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAsrdvdcclipespfylegpgglFEFIERQLKENGHMVIVVAEgagqefvaqsmpavdekdasgnRLLLDIGLWLTQKIKDHFTKVQKMMINMkyidptymiraipsngsdniYCTLLAHSAVHgamagftgftvgpvnsrhayIPIAVSSASH
mdhsissrslsrspspsispfnskrMILNPVFHKFNFDSRNFEikplvsrqnrpVVVAVRssnqkvhndgFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAqniviqkdsprgvhfrragprekvyfksdeVRACIVtcgglcpginTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRggtilrtsrgghdtnkivDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAvagipktidndIAVIDKSFGFDTAVEEAQRAINaahvevesvengVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSASH
MDHsissrslsrspspsispFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSASH
*************************MILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQ**********SGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIA******
*****************************P***************************************GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQ**********SGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSA**
******************SPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSASH
****ISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSAS*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAxxxxxxxxxxxxxxxxxxxxxVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSASH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
Q9FKG3530 6-phosphofructokinase 4, yes no 0.977 0.890 0.775 0.0
Q94AA4489 6-phosphofructokinase 3 O no no 0.863 0.852 0.747 0.0
Q9C5J7485 6-phosphofructokinase 7 O no no 0.857 0.853 0.744 0.0
Q9M076462 6-phosphofructokinase 6 O no no 0.834 0.872 0.751 0.0
Q9M0F9473 6-phosphofructokinase 1 O no no 0.836 0.854 0.737 0.0
Q9FIK0444 6-phosphofructokinase 2 O no no 0.799 0.869 0.557 1e-129
Q8VYN6537 6-phosphofructokinase 5, no no 0.708 0.636 0.548 1e-107
Q59126341 Pyrophosphate--fructose 6 N/A no 0.540 0.765 0.363 1e-33
Q9AGC0341 Pyrophosphate--fructose 6 yes no 0.540 0.765 0.353 2e-32
B9LHK4356 6-phosphofructokinase OS= yes no 0.455 0.617 0.369 3e-30
>sp|Q9FKG3|K6PF4_ARATH 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1 Back     alignment and function desciption
 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/473 (77%), Positives = 409/473 (86%), Gaps = 1/473 (0%)

Query: 6   SSRSLSRSPSPSISPFN-SKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQ 64
           +S S   S  P+IS FN S  ++    F       +   + P +  Q R +        +
Sbjct: 3   ASISFLGSTKPNISLFNPSSNVLPRRDFPLPALKLKKVSVLPRILHQKRLIRAQCSDGFK 62

Query: 65  KVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP 124
              +DGFVLEDVPHLT FLPDLPSYPNPLK+SQAYA+VK+TFVS ED VAQNIV+QK S 
Sbjct: 63  PEEDDGFVLEDVPHLTKFLPDLPSYPNPLKESQAYAIVKRTFVSSEDVVAQNIVVQKGSK 122

Query: 125 RGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEG 184
           RGVHFRRAGPRE+VYF+SDEV+ACIVTCGGLCPGINTVIREIVCGL+ MYGV+ ILGI+G
Sbjct: 123 RGVHFRRAGPRERVYFRSDEVKACIVTCGGLCPGINTVIREIVCGLNNMYGVNNILGIQG 182

Query: 185 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG 244
           GYRGFYSKNT+ L+PKVVNDIHKRGGT L+TSRGGHDT KIVDNI+DRGINQVYIIGG G
Sbjct: 183 GYRGFYSKNTMNLTPKVVNDIHKRGGTFLQTSRGGHDTAKIVDNIQDRGINQVYIIGGGG 242

Query: 245 TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
           TQKGA  IY+EVE+RGLQVAV+GIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE
Sbjct: 243 TQKGAEKIYEEVERRGLQVAVSGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 302

Query: 305 SVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364
           SVENGVGIVKLMGRYSGFI+M ATLA+RDVDCCLIPESPF+LEG GGLFEFIE +LKEN 
Sbjct: 303 SVENGVGIVKLMGRYSGFIAMIATLANRDVDCCLIPESPFFLEGKGGLFEFIEERLKENR 362

Query: 365 HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKY 424
           HMVIV+AEGAGQ++VAQSM A + KDASGNRLLLD+GLWLTQ+IKDHFT V+KMMINMKY
Sbjct: 363 HMVIVIAEGAGQDYVAQSMRASETKDASGNRLLLDVGLWLTQQIKDHFTNVRKMMINMKY 422

Query: 425 IDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIA 477
           IDPTYMIRAIPSN SDN+YCTLLA SAVHGAMAG++GFTVGPVNSRHAYIPI+
Sbjct: 423 IDPTYMIRAIPSNASDNVYCTLLAQSAVHGAMAGYSGFTVGPVNSRHAYIPIS 475

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q94AA4|K6PF3_ARATH 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5J7|K6PF7_ARATH 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1 Back     alignment and function description
>sp|Q9M076|K6PF6_ARATH 6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0F9|K6PF1_ARATH 6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIK0|K6PF2_ARATH 6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYN6|K6PF5_ARATH 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1 Back     alignment and function description
>sp|Q59126|PFP_AMYME Pyrophosphate--fructose 6-phosphate 1-phosphotransferase OS=Amycolatopsis methanolica GN=pfp PE=1 SV=2 Back     alignment and function description
>sp|Q9AGC0|PFP_AMYMD Pyrophosphate--fructose 6-phosphate 1-phosphotransferase OS=Amycolatopsis mediterranei GN=pfp PE=3 SV=1 Back     alignment and function description
>sp|B9LHK4|K6PF_CHLSY 6-phosphofructokinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pfkA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
359490072533 PREDICTED: 6-phosphofructokinase 4, chlo 0.975 0.883 0.809 0.0
224112817443 predicted protein [Populus trichocarpa] 0.844 0.920 0.894 0.0
255539891522 phosphofructokinase, putative [Ricinus c 0.913 0.844 0.816 0.0
356535482522 PREDICTED: 6-phosphofructokinase 4, chlo 0.981 0.908 0.771 0.0
449458333529 PREDICTED: 6-phosphofructokinase 4, chlo 0.879 0.803 0.832 0.0
79331832529 6-phosphofructokinase 4 [Arabidopsis tha 0.989 0.903 0.768 0.0
357442761543 6-phosphofructokinase [Medicago truncatu 0.906 0.806 0.828 0.0
297793715530 phosphofructokinase family protein [Arab 0.925 0.843 0.798 0.0
22328001530 6-phosphofructokinase 4 [Arabidopsis tha 0.977 0.890 0.775 0.0
358346077551 6-phosphofructokinase [Medicago truncatu 0.906 0.794 0.813 0.0
>gi|359490072|ref|XP_002282309.2| PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Vitis vinifera] gi|297745021|emb|CBI38613.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/482 (80%), Positives = 427/482 (88%), Gaps = 11/482 (2%)

Query: 1   MDHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVR 60
           MD S+SS   +RS  P   P  S  +     F  ++F SRNF + PL+SRQNR +  A  
Sbjct: 1   MDLSLSS--FARSSIPP--PLKSCNLTSLSNFPNYSFKSRNFSLTPLISRQNRRIR-AQY 55

Query: 61  SSNQKVHNDG------FVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVA 114
           S N      G      FV+++VPHLTNFLPDLPSYPNPL+++ AY +VK+ FVSPED VA
Sbjct: 56  SCNSGSGGGGGGDDDGFVVDEVPHLTNFLPDLPSYPNPLQQNLAYTIVKKNFVSPEDVVA 115

Query: 115 QNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMY 174
           Q IV+QK SPRGVHFRRAGPREKVYFKS+EVRACIVTCGGLCPGINTVIREIVCGL+YMY
Sbjct: 116 QKIVVQKGSPRGVHFRRAGPREKVYFKSEEVRACIVTCGGLCPGINTVIREIVCGLNYMY 175

Query: 175 GVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGI 234
           GV +ILGIEGGYRGFYSKNT+ L+PKVVNDIHKRGGT LRTSRGGHDT+KIVDNI+DRGI
Sbjct: 176 GVHDILGIEGGYRGFYSKNTIQLTPKVVNDIHKRGGTFLRTSRGGHDTDKIVDNIQDRGI 235

Query: 235 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294
           NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR
Sbjct: 236 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 295

Query: 295 AINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFE 354
           AINAAHVEVESVENGVGIVKLMGRYSGFI+M+ATLASRDVDCCLIPESPFYLEG GGLFE
Sbjct: 296 AINAAHVEVESVENGVGIVKLMGRYSGFIAMFATLASRDVDCCLIPESPFYLEGQGGLFE 355

Query: 355 FIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTK 414
           FIE++LKENGH+VIV+AEGAGQE+VAQSM AV EKDASGNRLLLD+GLWL+QKIKDHFTK
Sbjct: 356 FIEQRLKENGHVVIVLAEGAGQEYVAQSMHAVSEKDASGNRLLLDVGLWLSQKIKDHFTK 415

Query: 415 VQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYI 474
           VQKM +NMKYIDPTYMIRAIPSN SDNIYCTLLAHSAVHGAMAG+TGFT+GPV+SRHAYI
Sbjct: 416 VQKMAVNMKYIDPTYMIRAIPSNASDNIYCTLLAHSAVHGAMAGYTGFTIGPVSSRHAYI 475

Query: 475 PI 476
           PI
Sbjct: 476 PI 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112817|ref|XP_002332698.1| predicted protein [Populus trichocarpa] gi|222832952|gb|EEE71429.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539891|ref|XP_002511010.1| phosphofructokinase, putative [Ricinus communis] gi|223550125|gb|EEF51612.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356535482|ref|XP_003536274.1| PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449458333|ref|XP_004146902.1| PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|79331832|ref|NP_001032120.1| 6-phosphofructokinase 4 [Arabidopsis thaliana] gi|332010110|gb|AED97493.1| 6-phosphofructokinase 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357442761|ref|XP_003591658.1| 6-phosphofructokinase [Medicago truncatula] gi|355480706|gb|AES61909.1| 6-phosphofructokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297793715|ref|XP_002864742.1| phosphofructokinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297310577|gb|EFH41001.1| phosphofructokinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22328001|ref|NP_200966.2| 6-phosphofructokinase 4 [Arabidopsis thaliana] gi|75171244|sp|Q9FKG3.1|K6PF4_ARATH RecName: Full=6-phosphofructokinase 4, chloroplastic; Short=Phosphofructokinase 4; AltName: Full=Phosphohexokinase 4; Flags: Precursor gi|9758473|dbj|BAB09002.1| pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein [Arabidopsis thaliana] gi|20466456|gb|AAM20545.1| pyrophosphate-dependent phosphofructo-1-kinase-like protein [Arabidopsis thaliana] gi|22136390|gb|AAM91273.1| pyrophosphate-dependent phosphofructo-1-kinase-like protein [Arabidopsis thaliana] gi|332010109|gb|AED97492.1| 6-phosphofructokinase 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358346077|ref|XP_003637099.1| 6-phosphofructokinase [Medicago truncatula] gi|355503034|gb|AES84237.1| 6-phosphofructokinase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
TAIR|locus:2151571530 PFK4 "phosphofructokinase 4" [ 0.906 0.826 0.815 6.3e-195
TAIR|locus:2136849489 PFK3 "phosphofructokinase 3" [ 0.861 0.850 0.749 2.5e-175
TAIR|locus:2165046485 PFK7 "phosphofructokinase 7" [ 0.857 0.853 0.744 8.9e-173
TAIR|locus:2134108462 PFK6 "phosphofructokinase 6" [ 0.834 0.872 0.751 4e-170
TAIR|locus:2118249473 PFK1 "phosphofructokinase 1" [ 0.861 0.879 0.719 2.9e-167
TAIR|locus:2160897444 PFK2 "phosphofructokinase 2" [ 0.799 0.869 0.557 2e-118
TAIR|locus:2041208537 PFK5 "phosphofructokinase 5" [ 0.703 0.633 0.551 6.6e-102
TIGR_CMR|CHY_1349361 CHY_1349 "phosphofructokinase" 0.643 0.861 0.312 6e-32
UNIPROTKB|P65690343 pfkA "6-phosphofructokinase" [ 0.637 0.897 0.321 6.9e-31
TIGR_CMR|CHY_1143321 CHY_1143 "6-phosphofructokinas 0.438 0.660 0.368 5.6e-29
TAIR|locus:2151571 PFK4 "phosphofructokinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1888 (669.7 bits), Expect = 6.3e-195, P = 6.3e-195
 Identities = 357/438 (81%), Positives = 395/438 (90%)

Query:    40 RNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAY 99
             +   + P +  Q R +        +   +DGFVLEDVPHLT FLPDLPSYPNPLK+SQAY
Sbjct:    38 KKVSVLPRILHQKRLIRAQCSDGFKPEEDDGFVLEDVPHLTKFLPDLPSYPNPLKESQAY 97

Query:   100 AVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGI 159
             A+VK+TFVS ED VAQNIV+QK S RGVHFRRAGPRE+VYF+SDEV+ACIVTCGGLCPGI
Sbjct:    98 AIVKRTFVSSEDVVAQNIVVQKGSKRGVHFRRAGPRERVYFRSDEVKACIVTCGGLCPGI 157

Query:   160 NTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219
             NTVIREIVCGL+ MYGV+ ILGI+GGYRGFYSKNT+ L+PKVVNDIHKRGGT L+TSRGG
Sbjct:   158 NTVIREIVCGLNNMYGVNNILGIQGGYRGFYSKNTMNLTPKVVNDIHKRGGTFLQTSRGG 217

Query:   220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 279
             HDT KIVDNI+DRGINQVYIIGG GTQKGA  IY+EVE+RGLQVAV+GIPKTIDNDIAVI
Sbjct:   218 HDTAKIVDNIQDRGINQVYIIGGGGTQKGAEKIYEEVERRGLQVAVSGIPKTIDNDIAVI 277

Query:   280 DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLI 339
             DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI+M ATLA+RDVDCCLI
Sbjct:   278 DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIAMIATLANRDVDCCLI 337

Query:   340 PESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLD 399
             PESPF+LEG GGLFEFIE +LKEN HMVIV+AEGAGQ++VAQSM A + KDASGNRLLLD
Sbjct:   338 PESPFFLEGKGGLFEFIEERLKENRHMVIVIAEGAGQDYVAQSMRASETKDASGNRLLLD 397

Query:   400 IGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGF 459
             +GLWLTQ+IKDHFT V+KMMINMKYIDPTYMIRAIPSN SDN+YCTLLA SAVHGAMAG+
Sbjct:   398 VGLWLTQQIKDHFTNVRKMMINMKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAMAGY 457

Query:   460 TGFTVGPVNSRHAYIPIA 477
             +GFTVGPVNSRHAYIPI+
Sbjct:   458 SGFTVGPVNSRHAYIPIS 475
GO:0003872 "6-phosphofructokinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005945 "6-phosphofructokinase complex" evidence=IEA;ISS
GO:0006096 "glycolysis" evidence=IEA;ISS;IDA
GO:0009507 "chloroplast" evidence=ISM;IDA
TAIR|locus:2136849 PFK3 "phosphofructokinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165046 PFK7 "phosphofructokinase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134108 PFK6 "phosphofructokinase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118249 PFK1 "phosphofructokinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160897 PFK2 "phosphofructokinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041208 PFK5 "phosphofructokinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1349 CHY_1349 "phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P65690 pfkA "6-phosphofructokinase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1143 CHY_1143 "6-phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AA4K6PF3_ARATH2, ., 7, ., 1, ., 1, 10.74760.86330.8527nono
Q9M0F9K6PF1_ARATH2, ., 7, ., 1, ., 1, 10.73710.83640.8541nono
Q9FKG3K6PF4_ARATH2, ., 7, ., 1, ., 1, 10.77580.97720.8905yesno
Q9M076K6PF6_ARATH2, ., 7, ., 1, ., 1, 10.75120.83430.8722nono
Q9C5J7K6PF7_ARATH2, ., 7, ., 1, ., 1, 10.74400.85710.8536nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.110.991
3rd Layer2.7.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
PLN02564484 PLN02564, PLN02564, 6-phosphofructokinase 0.0
PRK06830443 PRK06830, PRK06830, diphosphate--fructose-6-phosph 0.0
PTZ00286459 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Prov 1e-173
PLN02884411 PLN02884, PLN02884, 6-phosphofructokinase 1e-152
COG0205347 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate 1e-63
TIGR02483324 TIGR02483, PFK_mixed, phosphofructokinase 3e-50
PRK03202320 PRK03202, PRK03202, 6-phosphofructokinase; Provisi 5e-48
cd00363338 cd00363, PFK, Phosphofructokinase, a key regulator 3e-39
TIGR02482301 TIGR02482, PFKA_ATP, 6-phosphofructokinase 5e-33
PRK14071360 PRK14071, PRK14071, 6-phosphofructokinase; Provisi 4e-30
pfam00365279 pfam00365, PFK, Phosphofructokinase 1e-29
cd00763317 cd00763, Bacterial_PFK, Phosphofructokinase, a key 1e-29
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 2e-20
PRK06555403 PRK06555, PRK06555, pyrophosphate--fructose-6-phos 4e-19
PRK14072416 PRK14072, PRK14072, 6-phosphofructokinase; Provisi 7e-19
TIGR02478 746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 5e-16
PTZ00468 1328 PTZ00468, PTZ00468, phosphofructokinase family pro 2e-15
TIGR02477 539 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosp 3e-15
TIGR02478746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 9e-15
cd00765 550 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a 2e-14
cd00764 762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 3e-14
cd00764762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 9e-12
PRK07085 555 PRK07085, PRK07085, diphosphate--fructose-6-phosph 1e-11
PLN03028 610 PLN03028, PLN03028, pyrophosphate--fructose-6-phos 7e-10
PLN02251 568 PLN02251, PLN02251, pyrophosphate-dependent phosph 5e-08
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase Back     alignment and domain information 
 Score =  902 bits (2333), Expect = 0.0
 Identities = 343/420 (81%), Positives = 387/420 (92%), Gaps = 2/420 (0%)

Query: 60  RSSNQKVHN--DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
            SS  K+     G+VLEDVPHLT++LPDLP+YPNPL+ + AY+VVKQ FV+ +D VAQ I
Sbjct: 1   GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60

Query: 118 VIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVD 177
           V+ KDSPRG HFRRAGPR+KVYF+SDEVRACIVTCGGLCPG+NTVIREIVCGLSYMYGV 
Sbjct: 61  VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120

Query: 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQV 237
            ILGI+GGYRGFYS+NT+ L+PKVVNDIHKRGGTIL TSRGGHDT+KIVD+I+DRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180

Query: 238 YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
           YIIGGDGTQKGA++IY+E+ +RGL+VAVAGIPKTIDNDI VIDKSFGFDTAVEEAQRAIN
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240

Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE 357
           AAHVE ESVENG+G+VKLMGRYSGFI+MYATLASRDVDCCLIPESPFYLEG GGLFEFIE
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIE 300

Query: 358 RQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQK 417
           ++LKENGHMVIVVAEGAGQ+ +A+SM + D +DASGN+LLLD+GLWL+QKIKDHFTKV+K
Sbjct: 301 KRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKK 360

Query: 418 MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIA 477
           M IN+KYIDPTYMIRAIPSN SDN+YCTLLAHSAVHGAMAG+TGFTVGPVN RHAYIP  
Sbjct: 361 MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFY 420

Length = 484
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase Back     alignment and domain information
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase Back     alignment and domain information
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional Back     alignment and domain information
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
PLN02564484 6-phosphofructokinase 100.0
PRK06830443 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PTZ00286459 6-phospho-1-fructokinase; Provisional 100.0
PLN02884411 6-phosphofructokinase 100.0
PRK06555403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
TIGR02483324 PFK_mixed phosphofructokinase. Members of this fam 100.0
PRK14072416 6-phosphofructokinase; Provisional 100.0
PRK14071360 6-phosphofructokinase; Provisional 100.0
TIGR02478745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
TIGR02482301 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin 100.0
cd00363338 PFK Phosphofructokinase, a key regulatory enzyme i 100.0
cd00764762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
cd00763317 Bacterial_PFK Phosphofructokinase, a key regulator 100.0
PRK03202320 6-phosphofructokinase; Provisional 100.0
TIGR02477539 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp 100.0
PRK07085555 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
COG0205347 PfkA 6-phosphofructokinase [Carbohydrate transport 100.0
cd00765550 Pyrophosphate_PFK Phosphofructokinase, a key regul 100.0
PLN02251568 pyrophosphate-dependent phosphofructokinase 100.0
cd00764 762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
PLN03028 610 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
TIGR02478 745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
PF00365282 PFK: Phosphofructokinase; InterPro: IPR000023 The 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
KOG2440666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
PRK04761246 ppnK inorganic polyphosphate/ATP-NAD kinase; Revie 92.99
PRK04885265 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.57
PRK14077287 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 90.9
PRK00561259 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.35
PRK03501264 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.19
PF01513285 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me 88.54
PRK03372306 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 88.35
PRK01911292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 88.24
TIGR01918431 various_sel_PB selenoprotein B, glycine/betaine/sa 88.18
TIGR01917431 gly_red_sel_B glycine reductase, selenoprotein B. 88.08
PLN02929301 NADH kinase 88.06
PRK14075256 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 87.61
PRK02649305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 87.37
PRK04539296 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 87.2
PRK03378292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 86.85
COG3199355 Predicted inorganic polyphosphate/ATP-NAD kinase [ 86.1
cd06321271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 85.61
PLN02935508 Bifunctional NADH kinase/NAD(+) kinase 84.97
PRK01231295 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 83.96
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 82.89
PRK11914306 diacylglycerol kinase; Reviewed 82.08
COG1570440 XseA Exonuclease VII, large subunit [DNA replicati 81.98
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 81.69
PRK13054300 lipid kinase; Reviewed 81.23
PRK03708277 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 80.97
PRK13337304 putative lipid kinase; Reviewed 80.85
PRK02231272 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 80.82
PRK02645305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 80.61
PRK02155291 ppnK NAD(+)/NADH kinase family protein; Provisiona 80.2
>PLN02564 6-phosphofructokinase Back     alignment and domain information 
Probab=100.00  E-value=5.4e-114  Score=910.32  Aligned_cols=424  Identities=81%  Similarity=1.320  Sum_probs=402.4

Q ss_pred             cCCCcceeccccccccccCCCCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCCCccc
Q 011540           49 SRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH  128 (483)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~r~~~  128 (483)
                      .+++|+++|+          .+|++|+||||.+|+|+.|++++|+..|+.++.....||++++.|+..+..++...++..
T Consensus         2 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~   71 (484)
T PLN02564          2 SSKPKIVTGD----------AGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTH   71 (484)
T ss_pred             CCcCccccCC----------CceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCcc
Confidence            4678999999          999999999999999999999999999999999899999999999998866666678899


Q ss_pred             ccccCCccccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhcc
Q 011540          129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR  208 (483)
Q Consensus       129 f~~~g~r~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~  208 (483)
                      |++||||+++||+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++
T Consensus        72 ~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~  151 (484)
T PLN02564         72 FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKR  151 (484)
T ss_pred             ceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhC
Confidence            99999999999999999999999999999999999999999887788889999999999999999999999999999999


Q ss_pred             CcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH
Q 011540          209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA  288 (483)
Q Consensus       209 GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA  288 (483)
                      |||+|||||+++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||
T Consensus       152 GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTA  231 (484)
T PLN02564        152 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA  231 (484)
T ss_pred             CCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCCeEE
Q 011540          289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI  368 (483)
Q Consensus       289 ~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~~vI  368 (483)
                      +++++++|+++++||.|+++||||||+|||+|||||+++|||+++||+|||||.||+++++.+++++|++|+++++|+||
T Consensus       232 v~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VI  311 (484)
T PLN02564        232 VEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVI  311 (484)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEE
Confidence            99999999999999999988999999999999999999999996799999999999999888999999999999999999


Q ss_pred             EEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHH
Q 011540          369 VVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLA  448 (483)
Q Consensus       369 VvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG  448 (483)
                      |||||+++.++.+..+....+|++||++|.+++.||+++|+++++++.++.+++||++|||+|||++|+++|++||++||
T Consensus       312 VVAEGagq~~~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG  391 (484)
T PLN02564        312 VVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLA  391 (484)
T ss_pred             EEeCCCccchhhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHH
Confidence            99999988777655433456899999999999999999999998544455689999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCceEEEEECCEEEEeehhhhhhc
Q 011540          449 HSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSAS  482 (483)
Q Consensus       449 ~~AV~~~~~G~tg~mvgi~~~~~~~iPi~~v~~~  482 (483)
                      +.|||++|+|+||+||+++|++++++||+++++.
T Consensus       392 ~~AV~~~~aG~tg~mVg~~~~~~~~vPi~~~~~~  425 (484)
T PLN02564        392 HSAVHGAMAGYTGFTVGPVNGRHAYIPFYRITEK  425 (484)
T ss_pred             HHHHHHHHcCCCCEEEEEECCEEEEEEHHHHhcc
Confidence            9999999999999999999999999999999863

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PTZ00286 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>PLN02884 6-phosphofructokinase Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>TIGR02483 PFK_mixed phosphofructokinase Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>PRK14071 6-phosphofructokinase; Provisional Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>TIGR02482 PFKA_ATP 6-phosphofructokinase Back     alignment and domain information
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PLN02251 pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes [] Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed Back     alignment and domain information
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 Back     alignment and domain information
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family Back     alignment and domain information
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B Back     alignment and domain information
>PLN02929 NADH kinase Back     alignment and domain information
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase Back     alignment and domain information
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>PRK11914 diacylglycerol kinase; Reviewed Back     alignment and domain information
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>PRK13054 lipid kinase; Reviewed Back     alignment and domain information
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK13337 putative lipid kinase; Reviewed Back     alignment and domain information
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
2hig_A487 Crystal Structure Of Phosphofructokinase Apoenzyme 9e-74
1mto_A319 Crystal Structure Of A Phosphofructokinase Mutant F 1e-22
3pfk_A319 Phosphofructokinase. Structure And Control Length = 4e-22
6pfk_A319 Phosphofructokinase, Inhibited T-State Length = 319 5e-22
4a3s_A319 Crystal Structure Of Pfk From Bacillus Subtilis Len 7e-21
1pfk_A320 Crystal Structure Of The Complex Of Phosphofructoki 3e-19
1zxx_A319 The Crystal Structure Of Phosphofructokinase From L 5e-18
1kzh_A 555 Structure Of A Pyrophosphate-dependent Phosphofruct 4e-15
3opy_B 941 Crystal Structure Of Pichia Pastoris Phosphofructok 2e-11
3o8o_A 787 Structure Of Phosphofructokinase From Saccharomyces 1e-10
3k2q_A420 Crystal Structure Of Pyrophosphate-Dependent Phosph 1e-10
3o8l_A 762 Structure Of Phosphofructokinase From Rabbit Skelet 1e-09
3opy_A 989 Crystal Structure Of Pichia Pastoris Phosphofructok 3e-09
3o8o_B 766 Structure Of Phosphofructokinase From Saccharomyces 1e-08
3hno_A419 Crystal Structure Of Pyrophosphate-Dependent Phosph 3e-04
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. Length = 487 Back     alignment and structure 
Iteration: 1

 Score =  274 bits (700), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 165/407 (40%), Positives = 237/407 (58%), Gaps = 27/407 (6%)
Query: 89  YPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRG--------VHFRRAGPREKVYF 140
           YPNP KK  +    +  F    D +  N    +D P          +    A  R +++F
Sbjct: 39  YPNPSKKYSS----RTEFRDKTDYIMYNPR-PRDEPSSENPVSVSPLLCELAAARSRIHF 93
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLT---L 197
              E    IVTCGG+CPG+N VIR I      +Y V  ++G   GY G   K + T   L
Sbjct: 94  NPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIEL 153
Query: 198 SPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
               V +IH  GGTIL +SRG  D  ++VD +E  G+N ++ +GGDGTQ+GA +I +E +
Sbjct: 154 HRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAK 213
Query: 258 KRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMG 317
           +RG+ ++V G+PKTIDND++   ++FGF TAVE+A +AI AA+ E  S   GVG+VKLMG
Sbjct: 214 RRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMG 273
Query: 318 RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQE 377
           R SGFI+  A +AS   + CL+PE+P   +    +   +ER+   +   VI+VAEG GQ+
Sbjct: 274 RDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQD 330
Query: 378 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMI---NMKYIDPTYMIRAI 434
           +   S       DASGN+ L+DIG+ LT+K+K  F K  K       +KYIDP+YMIRA 
Sbjct: 331 WGRGS----GGYDASGNKKLIDIGVILTEKVK-AFLKANKSRYPDSTVKYIDPSYMIRAC 385
Query: 435 PSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSA 481
           P + +D ++C  LA  AVH AMAG TG  +   ++ +  +PI V+++
Sbjct: 386 PPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATS 432
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From Bacillus Stearothermophilus Bound With Fructose-6-Phosphate Length = 319 Back     alignment and structure
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control Length = 319 Back     alignment and structure
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State Length = 319 Back     alignment and structure
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis Length = 319 Back     alignment and structure
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase From Escherichia Coli With Its Reaction Products Length = 320 Back     alignment and structure
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From Lactobacillus Delbrueckii Length = 319 Back     alignment and structure
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase From The Lyme Disease Spirochete Borrelia Burgdorferi Length = 555 Back     alignment and structure
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 941 Back     alignment and structure
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 787 Back     alignment and structure
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target Mqr88 Length = 420 Back     alignment and structure
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal Muscle Length = 762 Back     alignment and structure
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 989 Back     alignment and structure
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 766 Back     alignment and structure
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent Phosphofructokinase From Nitrosospira Multiformis. Northeast Structural Genomics Consortium Target Id Nmr42 Length = 419 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 0.0
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 4e-92
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 8e-52
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 8e-52
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 2e-51
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 6e-51
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 3e-46
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 3e-38
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 4e-46
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 2e-41
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 7e-46
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 4e-40
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 8e-46
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 3e-39
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 4e-44
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 1e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487 Back     alignment and structure
 Score =  539 bits (1391), Expect = 0.0
 Identities = 165/432 (38%), Positives = 241/432 (55%), Gaps = 25/432 (5%)

Query: 60  RSSNQKVHNDGFVLEDVPHLTNFLPDLP--SYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
           R +++ V     +L  V      +  LP   YPNP KK  +       F    D +  N 
Sbjct: 8   RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTDYIMYNP 63

Query: 118 VIQKD-------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGL 170
             + +       S   +    A  R +++F   E    IVTCGG+CPG+N VIR I    
Sbjct: 64  RPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTG 123

Query: 171 SYMYGVDEILGIEGGYRGFY---SKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVD 227
             +Y V  ++G   GY G     S+  + L    V +IH  GGTIL +SRG  D  ++VD
Sbjct: 124 INVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVD 183

Query: 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287
            +E  G+N ++ +GGDGTQ+GA +I +E ++RG+ ++V G+PKTIDND++   ++FGF T
Sbjct: 184 TLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQT 243

Query: 288 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE 347
           AVE+A +AI AA+ E  S   GVG+VKLMGR SGFI+  A +AS   + CL+PE+P   +
Sbjct: 244 AVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ 303

Query: 348 GPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQK 407
               +   +ER+   +   VI+VAEG GQ++           DASGN+ L+DIG+ LT+K
Sbjct: 304 ---EVMSLLERRFCHSRSCVIIVAEGFGQDW----GRGSGGYDASGNKKLIDIGVILTEK 356

Query: 408 IKDHF--TKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVG 465
           +K      K +     +KYIDP+YMIRA P + +D ++C  LA  AVH AMAG TG  + 
Sbjct: 357 VKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIA 416

Query: 466 PVNSRHAYIPIA 477
             ++ +  +PI 
Sbjct: 417 MRHNNYILVPIK 428
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555 Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419 Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Length = 319 Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 100.0
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 100.0
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 100.0
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 100.0
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 100.0
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 100.0
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 100.0
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 100.0
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 100.0
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 100.0
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 100.0
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
2an1_A292 Putative kinase; structural genomics, PSI, protein 94.5
2i2c_A272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 92.45
1z0s_A278 Probable inorganic polyphosphate/ATP-NAD kinase; A 91.23
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 89.86
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 85.32
1yt5_A258 Inorganic polyphosphate/ATP-NAD kinase; domain 1: 83.3
3kjx_A344 Transcriptional regulator, LACI family; LACL famil 82.96
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 82.83
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-99  Score=803.42  Aligned_cols=403  Identities=40%  Similarity=0.666  Sum_probs=360.4

Q ss_pred             CCCcccccccchhhcCCCC--CCCCCCCCCCcccccccccccccChHHHHHHHhccCC-------CCcccccccCCcccc
Q 011540           68 NDGFVLEDVPHLTNFLPDL--PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-------PRGVHFRRAGPREKV  138 (483)
Q Consensus        68 ~~~~~~eav~~l~~~~p~~--p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-------~r~~~f~~~g~r~~~  138 (483)
                      .-.+.++.|+.+.-..|.+  |++++||..|..    ...||.+++.|...+....+.       .....|+++|||+++
T Consensus        16 ~~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i   91 (487)
T 2hig_A           16 AHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRI   91 (487)
T ss_dssp             CTTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEE
T ss_pred             cccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCccee
Confidence            3457788888886666655  778899976654    588999999998765332221       123479999999999


Q ss_pred             ccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccccc---CCeeccChhHHhchhccCcccccc
Q 011540          139 YFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRT  215 (483)
Q Consensus       139 ~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~L~~~~v~~i~~~GGs~LGT  215 (483)
                      ||+++.+||||+||||||||||++||++|+++.+.|+.++||||++||+||++   +++++|+|++|++|+++|||+|||
T Consensus        92 ~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGT  171 (487)
T 2hig_A           92 HFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGS  171 (487)
T ss_dssp             SSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCC
T ss_pred             eecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeecc
Confidence            99999999999999999999999999999999766777799999999999964   699999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHH
Q 011540          216 SRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA  295 (483)
Q Consensus       216 sR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~  295 (483)
                      +|++++.++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||+++++++
T Consensus       172 sR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~ea  251 (487)
T 2hig_A          172 SRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQA  251 (487)
T ss_dssp             CCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHH
Confidence            99998999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCCeEEEEeCCCC
Q 011540          296 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAG  375 (483)
Q Consensus       296 i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~~vIVvaEGa~  375 (483)
                      |++|++||.||++||||||+|||+|||||+++|||+++||+|||||+||+++   ++++.|++|++.++|++||||||++
T Consensus       252 Id~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag  328 (487)
T 2hig_A          252 IRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFG  328 (487)
T ss_dssp             HHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTT
T ss_pred             HHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCc
Confidence            9999999999988999999999999999999999993399999999999987   8999999999888999999999997


Q ss_pred             chhhhccCCccccccccCCccchhHHHHHHHHHHhhccCc-eeE-EEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHH
Q 011540          376 QEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV-QKM-MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVH  453 (483)
Q Consensus       376 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~-~~~-~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~  453 (483)
                      +.+...    ...+|++||+++++++.+|+++|+++++.. ... .+++|+++|||+|||++|+++||+||++||..||+
T Consensus       329 ~~~~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~  404 (487)
T 2hig_A          329 QDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVH  404 (487)
T ss_dssp             GGGCCC------CBCTTSCBCCCCHHHHHHHHHHHHHHTTTTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccc----ccccccccCcchhHHHHHHHHHHHHHHhhcCccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHH
Confidence            665432    235799999999999999999999987421 100 13789999999999999999999999999999999


Q ss_pred             HHHcCCCceEEEEECCEEEEeehhhhhh
Q 011540          454 GAMAGFTGFTVGPVNSRHAYIPIAVSSA  481 (483)
Q Consensus       454 ~~~~G~tg~mvgi~~~~~~~iPi~~v~~  481 (483)
                      ++++|.||+||++++++++++||++++.
T Consensus       405 ~l~~G~tg~mVgi~~~~i~~vPl~ev~~  432 (487)
T 2hig_A          405 EAMAGATGCIIAMRHNNYILVPIKVATS  432 (487)
T ss_dssp             HHHTTEESEEEEEETTEEEEEEHHHHTT
T ss_pred             HHHcCCCCEEEEEECCEEEEEEHHHHHc
Confidence            9999999999999999999999999875
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Back     alignment and structure
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d2f48a1550 c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho 3e-74
d1pfka_320 c.89.1.1 (A:) ATP-dependent phosphofructokinase {E 2e-54
d4pfka_319 c.89.1.1 (A:) ATP-dependent phosphofructokinase {B 6e-54
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  241 bits (617), Expect = 3e-74
 Identities = 88/458 (19%), Positives = 162/458 (35%), Gaps = 81/458 (17%)

Query: 87  PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPR-----GVHFRRAGPREKVYFK 141
           P  PN LKK   +  +   +    +A+     +++          + F            
Sbjct: 12  PKLPNILKK--DFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---F 66

Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201
           S  +   I+  GG  PG + VI  +   +       ++ G +GG  G    + + L+  +
Sbjct: 67  SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 126

Query: 202 VNDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
           +N     GG  + +S           NK +   ++  +N + IIGGD +   AA++ +  
Sbjct: 127 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 186

Query: 257 EKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVK 314
           +K G  + V G+PKTID D+    I+ SFGFD+A +     I     +  S +     VK
Sbjct: 187 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 246

Query: 315 LMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI-----ERQLKENGHMVIV 369
           LMGR +  +++   L +    C +  E     +    + + +     +R L  +   V++
Sbjct: 247 LMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVI 306

Query: 370 VAEGAG----------------------------------------------------QE 377
           V EG                                                        
Sbjct: 307 VPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLF 366

Query: 378 FVAQSMPAVDEKDASGNRLLLDI--GLWLTQKIKDHFTKVQKMMINMKYIDP-----TYM 430
              + + ++ E+D  GN  +  +       + I+     ++K         P      Y 
Sbjct: 367 IQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYE 426

Query: 431 IRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVN 468
            R+   +  D+ YC  L ++AV   + G TG+     N
Sbjct: 427 GRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKN 464
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Back     information, alignment and structure
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d4pfka_319 ATP-dependent phosphofructokinase {Bacillus stearo 100.0
d1pfka_320 ATP-dependent phosphofructokinase {Escherichia col 100.0
d2f48a1550 Pyrophosphate-dependent phosphofructokinase {Lyme 100.0
d1z0sa1249 Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa 83.36
d1s1ma1258 CTP synthase PyrG, C-terminal domain {Escherichia 82.79
d2qv7a1312 Diacylglycerol kinase DgkB {Staphylococcus aureus 82.08
d1ig3a2169 Thiamin pyrophosphokinase, catalytic domain {Mouse 81.49
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 80.95
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: ATP-dependent phosphofructokinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.3e-80  Score=628.13  Aligned_cols=295  Identities=31%  Similarity=0.462  Sum_probs=271.8

Q ss_pred             eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-----
Q 011540          145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----  219 (483)
Q Consensus       145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-----  219 (483)
                      +|||||||||||||||++|+++++++.+ ++ .+|||+++||+||+++++++|+|+++++|+++|||+|||||++     
T Consensus         2 krIaIl~sGG~~pgiNa~i~~~v~~~~~-~~-~~v~g~~~G~~Gl~~~~~~~l~~~~~~~~~~~gGt~lgs~r~~~~~~~   79 (319)
T d4pfka_           2 KRIGVLTSGGDSPGMNAAIRSVVRKAIY-HG-VEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTE   79 (319)
T ss_dssp             CEEEEEEESSCCTTHHHHHHHHHHHHHH-TT-CEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCTTSSSH
T ss_pred             CEEEEECcCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEccchHHhcCCCcccCCHHHHHHHHhcCccccccCCCCccccc
Confidence            4999999999999999999999998864 44 6999999999999999999999999999999999999999974     


Q ss_pred             ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540          220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA  299 (483)
Q Consensus       220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i  299 (483)
                      ++.++++++|++++||+||+|||||||++|++|+++      .++|||||||||||+++||+||||+||+++++++|+++
T Consensus        80 ~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~L~~~------~~~vvgIPkTIDNDl~~td~t~Gf~TA~~~~~~~i~~l  153 (319)
T d4pfka_          80 EGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI  153 (319)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCSSCCCTTCSSCBTHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHhccceEEEecCchHHHHHHHHHhc------cCceeeeeeeccCCcCCccccccHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999863      37799999999999999999999999999999999999


Q ss_pred             HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchh
Q 011540          300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF  378 (483)
Q Consensus       300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~  378 (483)
                      +.+|+|++ ||||||+|||+|||||++++||+ +||+|||||.||+++   ++++.|++++++ +++++||||||+... 
T Consensus       154 ~~~a~s~~-rv~ivEvMGR~aG~lA~~~~la~-~a~~iliPE~~~~~~---~~~~~i~~~~~~~k~~~ivvvsEG~~~~-  227 (319)
T d4pfka_         154 RDTATSHE-RTYVIEVMGRHAGDIALWSGLAG-GAETILIPEADYDMN---DVIARLKRGHERGKKHSIIIVAEGVGSG-  227 (319)
T ss_dssp             HHHHHHTT-CEEEEEECCSSCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEETTTCCH-
T ss_pred             HhhcccCc-ceEEEEecCCCCcHHHHHhhccC-CCcEEEecCCCCCHH---HHHHHHHHHHhhcCCeeEEEEecccchh-
Confidence            99999875 79999999999999999999999 899999999999887   799999998876 588999999998642 


Q ss_pred             hhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 011540          379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG  458 (483)
Q Consensus       379 ~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G  458 (483)
                                             ..+.+.+++..+      +.+|+..|||+|||++|+++|+.+|++||+.||+++++|
T Consensus       228 -----------------------~~~~~~i~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g  278 (319)
T d4pfka_         228 -----------------------VDFGRQIQEATG------FETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEG  278 (319)
T ss_dssp             -----------------------HHHHHHHHHHHC------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----------------------hhhhhhhhhhcC------ceeEEeecCchhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence                                   235666777665      347788999999999999999999999999999999999


Q ss_pred             CCceEEEEECCEEEEeehhhhhhc
Q 011540          459 FTGFTVGPVNSRHAYIPIAVSSAS  482 (483)
Q Consensus       459 ~tg~mvgi~~~~~~~iPi~~v~~~  482 (483)
                      +||+||+++|++++++||++++.+
T Consensus       279 ~sg~mv~i~~~~~~~vpl~~v~~~  302 (319)
T d4pfka_         279 KGGRCVGIQNNQLVDHDIAEALAN  302 (319)
T ss_dssp             CCSEEEEEETTEEEEEEHHHHTTS
T ss_pred             CCCeEEEEECCEEEEEcHHHHHhc
Confidence            999999999999999999998754
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure