Citrus Sinensis ID: 011548

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccEEcHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcEEccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
mamemqknsmyieqndpegdirkdfldddgrakrtgtwVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTllsdcyrspdpvtgkrnytYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVkrsncfhrhghhvkcytsnnplMIIFACIQIVLSqipnfhklSWLSILAAVMSFAYSSIGIGLSIAKvigdgphattltgttvgvdvsASEKVWRAFQAIGDVAFAYAFSTVLVEIQDtlkssppenksmkratAVGVTTTTLFYIMCGVMgylafgndapgnfltgfgfyepfwlvDFANACIAVHLIGAYQVFCQPIFGFVEKWcnkrwpenkfitsehginvpcygvyhvnsFRLVWRTAYVIVSAVLAMIFPFFNDFVGligaasfwpltvyfPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLktykpfqavqee
mamemqknsmyieqndpegdIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLkssppenksmkratavgVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAttltgttvgvDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
********************************KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD***************TAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKP*******
************************************TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ*****
********SMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
******************************RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ*****
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MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
P92934481 Amino acid permease 6 OS= yes no 0.979 0.983 0.787 0.0
Q42400485 Amino acid permease 1 OS= no no 0.958 0.954 0.700 0.0
O80592475 Amino acid permease 8 OS= no no 0.960 0.976 0.668 0.0
Q38967493 Amino acid permease 2 OS= no no 0.937 0.918 0.591 1e-166
Q9FN04466 Amino acid permease 4 OS= no no 0.935 0.969 0.590 1e-164
Q39134476 Amino acid permease 3 OS= no no 0.981 0.995 0.570 1e-162
Q8GUM3480 Amino acid permease 5 OS= no no 0.968 0.975 0.540 1e-154
Q9FF99467 Probable amino acid perme no no 0.942 0.974 0.484 1e-118
Q9FKS8446 Lysine histidine transpor no no 0.867 0.939 0.290 2e-43
Q9LRB5441 Lysine histidine transpor no no 0.842 0.922 0.303 2e-42
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function desciption
 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/479 (78%), Positives = 426/479 (88%), Gaps = 6/479 (1%)

Query: 6   QKNSMYIEQNDPE---GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIA 62
           +K SM++EQ+ PE   GD  K+F D+DGR KRTGTW+T SAHIITAVIGSGVLSLAWAIA
Sbjct: 3   KKKSMFVEQSFPEHEIGDTNKNF-DEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAWAIA 61

Query: 63  QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCG 122
           QLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQLCG
Sbjct: 62  QLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQLCG 121

Query: 123 LAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182
           LAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+LSQ
Sbjct: 122 LAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQ 181

Query: 183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVW 241
           IPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H  TTLTG TVG+DVS +EK+W
Sbjct: 182 IPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIW 241

Query: 242 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGVMGY 300
           R FQAIGD+AFAYA+STVL+EIQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG +GY
Sbjct: 242 RTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGY 301

Query: 301 LAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPE 360
            AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQVFCQPIF FVE    KRWP+
Sbjct: 302 AAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPD 361

Query: 361 NKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPL 420
           NKFIT E+ I+VPC G + +N  RLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASFWPL
Sbjct: 362 NKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPL 421

Query: 421 TVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 479
           TVYFP+EM+IA+ KI +FSFTW WLKIL W+CFIVSLVA  GSVQGLIQSLK +KPFQA
Sbjct: 422 TVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPFQA 480
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.
Arabidopsis thaliana (taxid: 3702)
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
31455393481 amino acid permease 6 [Brassica napus] 0.985 0.989 0.784 0.0
255537896484 amino acid transporter, putative [Ricinu 0.993 0.991 0.758 0.0
284519840483 amino acid permease 6 [Populus tremula x 0.991 0.991 0.764 0.0
225458966483 PREDICTED: amino acid permease 6 [Vitis 0.991 0.991 0.754 0.0
363814354479 uncharacterized protein LOC100777963 [Gl 0.981 0.989 0.764 0.0
356515653479 PREDICTED: amino acid permease 6-like [G 0.981 0.989 0.759 0.0
224063403488 amino acid permease [Populus trichocarpa 0.995 0.985 0.752 0.0
15240523481 amino acid permease 6 [Arabidopsis thali 0.979 0.983 0.787 0.0
449436914477 PREDICTED: amino acid permease 6-like [C 0.983 0.995 0.746 0.0
297795723507 hypothetical protein ARALYDRAFT_495022 [ 0.979 0.932 0.742 0.0
>gi|31455393|emb|CAD92450.1| amino acid permease 6 [Brassica napus] Back     alignment and taxonomy information
 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/482 (78%), Positives = 431/482 (89%), Gaps = 6/482 (1%)

Query: 5   MQKNSMYIEQ---NDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAI 61
           M+K SM+IEQ   +   GD+ K+F DDDGR KRTGTW+T SAHIITAVIGSGVLSLAWAI
Sbjct: 1   MEKKSMFIEQSFTDHKSGDMNKNF-DDDGRQKRTGTWMTGSAHIITAVIGSGVLSLAWAI 59

Query: 62  AQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121
           AQLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR V LC
Sbjct: 60  AQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVMLC 119

Query: 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181
           GLAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFACIQIVLS
Sbjct: 120 GLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCSTSNTPFMIIFACIQIVLS 179

Query: 182 QIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKV 240
           QIPNFH LSWLSILAAVMSF+Y+SIGIGLSIAKV G G HA T LTG TVGVDV+ SEKV
Sbjct: 180 QIPNFHNLSWLSILAAVMSFSYASIGIGLSIAKVAGGGVHARTALTGVTVGVDVTGSEKV 239

Query: 241 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGVMG 299
           WR FQA+GD+AFAYA+STVL+EIQDTLK+SPP ENK+MKRA+ VGV+TTT FY++CG +G
Sbjct: 240 WRTFQAVGDIAFAYAYSTVLIEIQDTLKASPPSENKAMKRASLVGVSTTTFFYMLCGCVG 299

Query: 300 YLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWP 359
           Y AFGN+APGNFLTGFGFYEPFWL+DFAN CIAVHL+GAYQVFCQPIF FVE    KRWP
Sbjct: 300 YAAFGNNAPGNFLTGFGFYEPFWLIDFANVCIAVHLVGAYQVFCQPIFQFVESQSAKRWP 359

Query: 360 ENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWP 419
           +NKFIT E+ +NVPC G + ++ FRLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASFWP
Sbjct: 360 DNKFITGEYKMNVPCGGDFGISLFRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWP 419

Query: 420 LTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 479
           LTVYFP+EM+IA+  +++FSFTW WLKIL W+CF+VSLVA  GSVQGLIQSLK +KPFQA
Sbjct: 420 LTVYFPIEMHIAQKNMKKFSFTWTWLKILSWACFLVSLVAAAGSVQGLIQSLKDFKPFQA 479

Query: 480 VQ 481
            +
Sbjct: 480 PE 481

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537896|ref|XP_002510013.1| amino acid transporter, putative [Ricinus communis] gi|223550714|gb|EEF52200.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|284519840|gb|ADB92670.1| amino acid permease 6 [Populus tremula x Populus alba] Back     alignment and taxonomy information
>gi|225458966|ref|XP_002285557.1| PREDICTED: amino acid permease 6 [Vitis vinifera] gi|302142129|emb|CBI19332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363814354|ref|NP_001242816.1| uncharacterized protein LOC100777963 [Glycine max] gi|255642183|gb|ACU21356.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356515653|ref|XP_003526513.1| PREDICTED: amino acid permease 6-like [Glycine max] Back     alignment and taxonomy information
>gi|224063403|ref|XP_002301129.1| amino acid permease [Populus trichocarpa] gi|222842855|gb|EEE80402.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15240523|ref|NP_199774.1| amino acid permease 6 [Arabidopsis thaliana] gi|75220393|sp|P92934.1|AAP6_ARATH RecName: Full=Amino acid permease 6; AltName: Full=Amino acid transporter AAP6 gi|1769887|emb|CAA65051.1| amino acid permease 6 [Arabidopsis thaliana] gi|8809686|dbj|BAA97227.1| amino acid permease 6 [Arabidopsis thaliana] gi|110738094|dbj|BAF00980.1| amino acid permease 6 [Arabidopsis thaliana] gi|332008455|gb|AED95838.1| amino acid permease 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449436914|ref|XP_004136237.1| PREDICTED: amino acid permease 6-like [Cucumis sativus] gi|449522221|ref|XP_004168126.1| PREDICTED: amino acid permease 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297795723|ref|XP_002865746.1| hypothetical protein ARALYDRAFT_495022 [Arabidopsis lyrata subsp. lyrata] gi|297311581|gb|EFH42005.1| hypothetical protein ARALYDRAFT_495022 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.983 0.987 0.769 1.1e-204
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.946 0.942 0.698 1.1e-181
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.952 0.968 0.660 3.6e-169
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.939 0.953 0.580 1.2e-150
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.935 0.916 0.583 3.3e-150
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.933 0.967 0.582 4.8e-149
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.944 0.95 0.542 1.9e-140
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.944 0.976 0.486 3.8e-117
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.629 0.689 0.346 2.6e-55
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.623 0.682 0.324 1.3e-51
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1980 (702.1 bits), Expect = 1.1e-204, P = 1.1e-204
 Identities = 371/482 (76%), Positives = 419/482 (86%)

Query:     3 MEMQKNSMYIEQNDPE---GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAW 59
             ME +K SM++EQ+ PE   GD  K+F D+DGR KRTGTW+T SAHIITAVIGSGVLSLAW
Sbjct:     1 ME-KKKSMFVEQSFPEHEIGDTNKNF-DEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAW 58

Query:    60 AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQ 119
             AIAQLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQ
Sbjct:    59 AIAQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQ 118

Query:   120 LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIV 179
             LCGLAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+
Sbjct:   119 LCGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQII 178

Query:   180 LSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXX-DVSASE 238
             LSQIPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H            DVS +E
Sbjct:   179 LSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAE 238

Query:   239 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGV 297
             K+WR FQAIGD+AFAYA+STVL+EIQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG 
Sbjct:   239 KIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGC 298

Query:   298 MGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKR 357
             +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQVFCQPIF FVE    KR
Sbjct:   299 VGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKR 358

Query:   358 WPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASF 417
             WP+NKFIT E+ I+VPC G + +N  RLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASF
Sbjct:   359 WPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASF 418

Query:   418 WPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPF 477
             WPLTVYFP+EM+IA+ KI +FSFTW WLKIL W+CFIVSLVA  GSVQGLIQSLK +KPF
Sbjct:   419 WPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPF 478

Query:   478 QA 479
             QA
Sbjct:   479 QA 480
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA
GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA
GO:0015810 "aspartate transport" evidence=IDA
GO:0015827 "tryptophan transport" evidence=IDA
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P92934AAP6_ARATHNo assigned EC number0.78700.97920.9833yesno
Q42400AAP1_ARATHNo assigned EC number0.70080.95850.9546nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-122
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 5e-07
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  363 bits (935), Expect = e-122
 Identities = 139/437 (31%), Positives = 205/437 (46%), Gaps = 32/437 (7%)

Query: 34  RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRS 93
            T +   A  ++I A+IG+GVLSL +A  QLGW+ G  +L+    I+ YT  LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 94  PDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCF 153
            D V GKR  +Y D+     G +   L   A   NL GV I Y I A  ++ A+  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 154 HRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIA 213
             H        S    +IIF  I I LS IPN   LS LS++AAV S  Y  I +     
Sbjct: 121 TCH-------ISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAE 172

Query: 214 KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273
             +               +    + K+ R F AIG + FA+    VL+ IQ+T+K SP +
Sbjct: 173 LGVLTAQ-------GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMK-SPSK 224

Query: 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAV 333
            K+M +     +   T+ YI+ G++GYLAFGN+  GN L         WL+D AN  + +
Sbjct: 225 FKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVL 282

Query: 334 HLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVI 393
           HL+ +Y +   PI   VE    ++    K                     R+V R+  V+
Sbjct: 283 HLLLSYPLQAFPIRQIVENLLFRKGASGKHNPK-------------SKLLRVVIRSGLVV 329

Query: 394 VSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLK-ILIWSC 452
           ++ ++A+  PF  DF+ L+GA S  PLT   P   ++   K ++ S   +W   IL   C
Sbjct: 330 ITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVIC 389

Query: 453 FIVSLVALVGSVQGLIQ 469
            ++ L+ +   V GLI 
Sbjct: 390 IVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.97
PRK09664415 tryptophan permease TnaB; Provisional 99.97
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.94
PRK13629443 threonine/serine transporter TdcC; Provisional 99.91
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PRK10655438 potE putrescine transporter; Provisional 99.79
PRK15049499 L-asparagine permease; Provisional 99.79
PRK10249458 phenylalanine transporter; Provisional 99.78
PRK10644445 arginine:agmatin antiporter; Provisional 99.77
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.76
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.76
PRK10238456 aromatic amino acid transporter; Provisional 99.75
PRK11387471 S-methylmethionine transporter; Provisional 99.75
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.74
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.74
PRK11021410 putative transporter; Provisional 99.74
PRK10746461 putative transport protein YifK; Provisional 99.73
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.73
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.73
PRK10580457 proY putative proline-specific permease; Provision 99.72
PRK10836489 lysine transporter; Provisional 99.71
TIGR00909429 2A0306 amino acid transporter. 99.71
TIGR00913478 2A0310 amino acid permease (yeast). 99.71
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.7
TIGR00906557 2A0303 cationic amino acid transport permease. 99.7
TIGR00930 953 2a30 K-Cl cotransporter. 99.67
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.66
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.66
TIGR00911501 2A0308 L-type amino acid transporter. 99.65
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.63
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.56
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.54
COG0833541 LysP Amino acid transporters [Amino acid transport 99.53
COG0531466 PotE Amino acid transporters [Amino acid transport 99.51
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.5
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.5
PRK15238496 inner membrane transporter YjeM; Provisional 99.41
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.37
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.37
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.3
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.29
KOG3832319 consensus Predicted amino acid transporter [Genera 99.2
PF03845320 Spore_permease: Spore germination protein; InterPr 99.1
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.79
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.68
PRK11375484 allantoin permease; Provisional 98.66
COG3949349 Uncharacterized membrane protein [Function unknown 98.55
PRK12488549 acetate permease; Provisional 98.49
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.42
TIGR00813407 sss transporter, SSS family. have different number 98.4
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.4
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.34
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.32
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.32
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.32
PRK09395551 actP acetate permease; Provisional 98.27
PRK11017404 codB cytosine permease; Provisional 98.1
COG1457442 CodB Purine-cytosine permease and related proteins 98.07
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.0
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.98
PRK15419502 proline:sodium symporter PutP; Provisional 97.97
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 97.97
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.9
COG4147529 DhlC Predicted symporter [General function predict 97.82
PRK10484523 putative transporter; Provisional 97.7
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.6
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.53
PRK00701439 manganese transport protein MntH; Reviewed 97.31
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.16
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.11
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.04
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.97
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.9
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 95.63
PRK15015 701 carbon starvation protein A; Provisional 95.57
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.53
COG1966575 CstA Carbon starvation protein, predicted membrane 95.42
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 94.16
PRK15433439 branched-chain amino acid transport system 2 carri 93.66
KOG2466572 consensus Uridine permease/thiamine transporter/al 92.78
COG0814415 SdaC Amino acid permeases [Amino acid transport an 92.38
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 91.32
COG0733439 Na+-dependent transporters of the SNF family [Gene 90.64
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 89.66
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 89.57
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 87.94
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 84.27
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 82.85
PRK15433439 branched-chain amino acid transport system 2 carri 80.42
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-54  Score=427.53  Aligned_cols=407  Identities=39%  Similarity=0.673  Sum_probs=359.1

Q ss_pred             CCCCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548           28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD  107 (483)
Q Consensus        28 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~  107 (483)
                      ++..++|++|++++.++.++.++|.|+|+|||+++++||..|+++++..++++.||..+|.+|.+..+++.++|.++|.|
T Consensus        30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d  109 (437)
T KOG1303|consen   30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD  109 (437)
T ss_pred             CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence            34455788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548          108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH  187 (483)
Q Consensus       108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~  187 (483)
                      +++++||+++++++.+.+.+..++.++.|++..+|++..+.+..+.+..      ..+...|.++++++.+|++++++++
T Consensus       110 l~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~  183 (437)
T KOG1303|consen  110 LGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFH  183 (437)
T ss_pred             HHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcc
Confidence            9999999999999999999999999999999999999999987664331      2335688999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhc
Q 011548          188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTL  267 (483)
Q Consensus       188 ~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em  267 (483)
                      .++++|..+.++.+.+..+.+..++.+..............      .+..   ..+++++++.|+|++|..+|+|+++|
T Consensus       184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~~---~~f~a~g~iaFaf~gH~v~peIq~tM  254 (437)
T KOG1303|consen  184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTIP---TVFTALGIIAFAYGGHAVLPEIQHTM  254 (437)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCCc---chhhhhhheeeeecCCeeeeehHhhc
Confidence            99999999999999988888888877765432211111111      0000   01899999999999999999999999


Q ss_pred             ccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccchH
Q 011548          268 KSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF  347 (483)
Q Consensus       268 ~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~  347 (483)
                      |+|    ++|+|++..++.+++.+|+.+++.||++|||+++|+++.|++  +|.|....+++++.++++.++.++..|+.
T Consensus       255 k~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~  328 (437)
T KOG1303|consen  255 KSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLF  328 (437)
T ss_pred             CCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchH
Confidence            999    779999999999999999999999999999999999999996  58899999999999999999999999999


Q ss_pred             HHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhhHH
Q 011548          348 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVE  427 (483)
Q Consensus       348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP~l  427 (483)
                      +.+|+......++  +.+             +....|.+.|..+++.+.++|+.+|.|+++++++|+.....+++++|++
T Consensus       329 ~~~E~~~~~~~~~--~~~-------------~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~  393 (437)
T KOG1303|consen  329 DVVEKLIGVKHPD--FKK-------------RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCL  393 (437)
T ss_pred             HHHHHHhccCCcc--ccc-------------cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHH
Confidence            9999998764332  111             1226899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011548          428 MYIARTKIRRFSFTWVWLKIL-IWSCFIVSLVALVGSVQGLIQS  470 (483)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~g~~~~i~~l~~~  470 (483)
                      +|++.+|.++.+.+|.+.+.. .++++++++....++++.++.+
T Consensus       394 ~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  394 MYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            999999988888899888888 7899999999999999988753

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.83
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.7
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.62
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.75
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.35
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.02
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 92.8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.83  E-value=1.2e-18  Score=177.26  Aligned_cols=367  Identities=11%  Similarity=-0.007  Sum_probs=223.7

Q ss_pred             CccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548           31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (483)
Q Consensus        31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~  110 (483)
                      +++|+.+.++.+...+++++|+|++.+|....+.|. .+++.+++.++........+.|...+. |+.|    +..+..+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~   78 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLD-PSPG----GSYAYAR   78 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT----THHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccC-CCCC----CchhhHH
Confidence            356789999999999999999999999998888886 478889999999999999998877653 3322    5666778


Q ss_pred             HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchh
Q 011548          111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS  190 (483)
Q Consensus       111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~  190 (483)
                      +.+||+.+++..+..++.......++....++++..+.+..      . .  .+....+.++ .+++.-..-.+..+...
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~-~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------K-D--PWVLTITCVV-VLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG------G-S--HHHHHHHHHH-HHHHHHHHHHHCHHHHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc------c-c--cHHHHHHHHH-HHHHHHHHHHhchHHHH
Confidence            99999999999999988877777777777777665443210      0 0  0101111111 11122222234566666


Q ss_pred             HHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccC
Q 011548          191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS  270 (483)
Q Consensus       191 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~  270 (483)
                      .++.+.....+...+++++..+..... .....   .+    +.....+..+++.++...+|+|.|.+.+....+|+|||
T Consensus       149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~~~~---~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p  220 (445)
T 3l1l_A          149 RVQAVATVLALIPIVGIAVFGWFWFRG-ETYMA---AW----NVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCC-CCCCC---C---------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhccc---cc----CccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence            666555555444444333333322211 10000   11    11111234577889999999999999999999999998


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCc----ccccccCcCCchHHHHHHHHHHHHHHHHhhhccccch
Q 011548          271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG----NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI  346 (483)
Q Consensus       271 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~  346 (483)
                      +   |+.+|++..+..++.++|++..+......+.+...    +...-+.....++...+..+...+..+.+.....+..
T Consensus       221 ~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (445)
T 3l1l_A          221 K---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLA  297 (445)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             c---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   88999999999999999999888877777644221    1111111011234555666667777776666555555


Q ss_pred             HHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHc----CchHHHHHHhhhhhhhhhh
Q 011548          347 FGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIF----PFFNDFVGLIGAASFWPLT  421 (483)
Q Consensus       347 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----p~~~~v~~~~Gs~~~~~~~  421 (483)
                      .+.+..+-. +..|  +...+.++.+.|        .........+... +.+....    ..++.+.++.+.  +..+.
T Consensus       298 sR~~~~~a~dg~lP--~~~~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~  364 (445)
T 3l1l_A          298 GQTAKAAADDGLFP--PIFARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSVI--FTLVP  364 (445)
T ss_dssp             HHHHHHHHHTTSSC--GGGGCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHhCCCCc--HHHHhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHH--HHHHH
Confidence            555555442 2334  223333333444        3333332222221 1111112    336777776553  34788


Q ss_pred             hhhhHHHHHHHhCCCc
Q 011548          422 VYFPVEMYIARTKIRR  437 (483)
Q Consensus       422 ~ilP~l~~~~~~~~~~  437 (483)
                      |.++.+.+++.+++++
T Consensus       365 y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          365 YLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHhhcCc
Confidence            9999999998876554
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 80.77
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.77  E-value=23  Score=33.10  Aligned_cols=108  Identities=12%  Similarity=0.032  Sum_probs=61.8

Q ss_pred             CcHHHHHHHHHHhhhhHhh-hHHHHHHHh-hCh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548           36 GTWVTASAHIITAVIGSGV-LSLAWAIAQ-LGW---VAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (483)
Q Consensus        36 ~s~~~~~~~li~~~iG~Gi-L~LP~~f~~-~G~---~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~  110 (483)
                      .+..+-++..++..+|-|= .-.||-..+ .|.   ++=.++++++++=..+-=..+.|..++. |     ...+..+..
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g-~-----i~~~~~i~~   78 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ-G-----HGTTPAIFY   78 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-T-----CCSHHHHHH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-c-----ccHHHHHHH
Confidence            3456778888999999875 568997554 452   2223333333443333334444543432 2     236777766


Q ss_pred             HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHh
Q 011548          111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR  149 (483)
Q Consensus       111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~  149 (483)
                      ...+++....+.+...+..+..++-|.++.+-.+..+..
T Consensus        79 ~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~  117 (509)
T d2a65a1          79 LLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK  117 (509)
T ss_dssp             HHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655544334556666666666666777776666655543