Citrus Sinensis ID: 011571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
Protein Sequence
MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEEKG
Secondary Structure (PSIPRED)
cccccccHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKkwfgkqkssgavlsseenlavsvpvphpcsadedAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAvarfpgksqEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQMlrnssksanptfmdpnnphwgwSWLERWMaarpwesgstvdnydlsslksATSRAMSIREISRAYsrrdlnhdnkdsptahklsrppsrrqspstppskapstssitgkvrppspkgsqwggdgdsrsvfsvrsehyrrhsiagssmgdneslasspsvpsymaptqstkarsrgtsplglngtpdkrslgsakkrlsfpsspagprrhsgpprvdispledsevhveekg
Flexible Loop (DISEMBL)
mgkkgswfsavkkvlsseqkdkkdqktiklkkkwfgkqkssgavlsseenlaVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVarfpgksqeeiAVIKIQTAFRGYLARRALRALRGLVRlksliqghsvkrqatttlrcmQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRaysrrdlnhdnkdsptahklsrppsrrqspstppskapstssitgkvrppspkgsqwggdgdsRSVFSVRSEHYRRhsiagssmgdneSLASSPSVPSYMAPtqstkarsrgtsplglngtpdkrslgsakkrlsfpsspagprrhsgpprvdispledsevhveekg
Low Complexity Region (SEG)
MGKKGSWFSAVKKVLSSEqkdkkdqktiklkkkWFGKQKSSGAVLSSEENLAVSVPVPHPCSADEDAKLIESENKQNKHaytvalatavaaeaavaaaqaaaevvrltaVARFPGKSQEEIAVIKIQTAFRGYlarralralrglvrlKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLsrppsrrqspstppskapstssITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEEKG
Disordered region (IsUnstruct)
******************************************************************************HAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQS*********************************************************************Y***********************PHWGWSWLERWMAARPWESG**************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MGKKGSWFS***************************************************************************************************************IAVIKIQTAFRGYLARRALRALRGLV*****************TLRCMQTL******************************************************************************************************WSWLERWMAARP******************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGKKGSWFSAVK**************TIKLKKK*****************LAVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAE*********AEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSE**********QKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHD***************************************************DSRSVFSVRSEHYRRHSIA********************************TSPLGLNGTPDKRSLGSA********************RVDISPL***********
Disordered Region (DISPRO)
***********************************************************************************************************TAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIE*LR******EWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQMLRNS**************HWGWSWLERWMAARPWE****************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEEKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	483	2.2.26 [Sep-21-2011]
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.884	0.940	0.408	7e-72
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.559	0.404	0.339	2e-34
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.300	0.247	0.360	1e-19
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.293	0.178	0.259	3e-13

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score =  271 bits (693), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 198/485 (40%), Positives = 269/485 (55%), Gaps = 58/485 (11%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           M KK  W   VKK  S + K        KLK +    Q S   V+S      V +     
Sbjct: 1   MVKKAKWLKNVKKAFSPDSK--------KLKHESVECQDS---VIS----YPVLIATSRS 45

Query: 61  CSADEDAKLIESENKQNKHAY--TVALATAVAAEAAVAAAQAAAEVV-RLTAVARFPGKS 117
            S   + ++ E   +Q K+ Y  +    TA  A   V +  ++ E V +   V RF GKS
Sbjct: 46  SSPQFEVRVDEVNYEQKKNLYPPSSDSVTATVAHVLVDSPPSSPESVHQAIVVNRFAGKS 105

Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
           +EE A I IQ+ FRG+LARR  + +RG  RLK L++G  V+RQA  TL+CMQTL+RVQSQ
Sbjct: 106 KEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQ 165

Query: 178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
           IR+RRIRMSEENQA  +QL QK  KE   L  L+ G  W+++ +SKEQ+EA + HK EA 
Sbjct: 166 IRSRRIRMSEENQARHKQLLQKHAKE---LGGLKNGGNWNYSNQSKEQVEAGMLHKYEAT 222

Query: 238 IRRERALAYAFSNQM-LRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS---TVD 293
           +RRERALAYAF++Q  L++ SK+ANP FMDP+NP WGWSWLERWMA RPWES        
Sbjct: 223 MRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWESSEKEQNTT 282

Query: 294 NYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAP 353
           N D SS+K++T+R     E +++ +R  LN   K                 P+TP     
Sbjct: 283 NNDNSSVKNSTNRNSQGGETAKSSNRNKLNSSTK-----------------PNTP----- 320

Query: 354 STSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPS-VP 412
            ++S T    P   +         S    +  SE  RR SIA  S+ D+E+L+SS +   
Sbjct: 321 -SASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRRPSIARPSVSDDETLSSSTARRS 379

Query: 413 SYMAPTQST---KARSRGTSPLGL-NGTPDKRSL----GSAKKRLSFPSSPA-GPRRHSG 463
           S + PT  +   K +S+ +S + +   T ++ S+      AKKRLS  +SPA  PRR S 
Sbjct: 380 SNLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILPEKAPAKKRLSTSASPAPKPRRSSA 439

Query: 464 PPRVD 468
           PP+V+
Sbjct: 440 PPKVE 444

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 178/351 (50%), Gaps = 81/351 (23%)

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           +  +  KIQ AFRGY+AR++ RAL+GLVRL+ +++G+SVKRQ    ++ MQ + RVQSQI
Sbjct: 321 QHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQI 380

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVG-EEWDHTAKSKEQIEAKLQHKQEAA 237
           ++RRI+M  ENQA       + EK+  K  A + G + WD +  +KE+ +++ Q K +A 
Sbjct: 381 QSRRIKM-LENQA-------QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAI 432

Query: 238 IRRERALAYAFSNQMLRNSSKSA--NPTFMDPNNPHWGWSWLERWMA-ARPWESGSTVD- 293
           I+RER++AYA+S ++ +NS KS   N +F     P W W+W++R    A P  S S    
Sbjct: 433 IKRERSMAYAYSRKLWKNSPKSTQDNRSF-----PQW-WNWVDRQNPLASPAPSYSQPQR 486

Query: 294 NYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSP-----TAHKLSRPPSRRQSPSTP 348
           ++ L+  +   S    + + S+ +  R  NH +  +P     T H  SRP          
Sbjct: 487 DFRLTPSRLCPS---PLSQSSKQHHIRLDNHFDTSTPRSSRSTFHTPSRP---------- 533

Query: 349 PSKAPSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAG--SSMGDNESLA 406
                                      G SR         Y R  + G  S   D++SL 
Sbjct: 534 ------------------------IHTGTSR---------YSRGRLRGQDSPFKDDDSLT 560

Query: 407 SSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLG---SAKKRLSFPSS 454
           S P  PSYMAPT S KA+ R       N  P +R +G   S K+R+S+P +
Sbjct: 561 SCPPFPSYMAPTVSAKAKVRP------NSNPKERVMGTPVSEKRRMSYPPT 605

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 24/169 (14%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
           Q EIA   +Q AFRGYLARRA  AL+G++RL++LI+GH V+RQA  TL  +  + R+Q+ 
Sbjct: 111 QREIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAF 170

Query: 178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
            R R IR S+       Q+ +KC     +L+ LQ                 KL +  +A 
Sbjct: 171 ARGREIRKSD----IGVQVYRKC-----RLQLLQGN---------------KLANPTDAY 206

Query: 238 IRRERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPW 286
           +  ++  A AF+ ++L +S K       D +NP+    WLE W A+  W
Sbjct: 207 LGIKKLTANAFAQKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFW 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 39/181 (21%)

Query: 104 VVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATT 163
           +VR  +  +   K  E + V+ IQ A RG+LARR L   + +++L++ ++GH V+ QA  
Sbjct: 200 IVRKESDEKVDEKLDESVIVV-IQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMG 258

Query: 164 TLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSK 223
           +LRC+Q + ++Q+ +RAR                                    H+ K  
Sbjct: 259 SLRCVQAIVKMQAMVRAR------------------------------------HSTKDG 282

Query: 224 EQIEAKLQHKQEAAIRRERALAYAFSNQMLRNSSKSANPTF-MDPNNPHWGWSWLERWMA 282
            ++ A    K E     ++ L   F+  ++ ++ K+       DP  P   W+WLERWM+
Sbjct: 283 SRVSA-TSDKSEPNAAAQKLLENKFAKHLMESTPKTKPINIKCDPTKPSSAWNWLERWMS 341

Query: 283 A 283
            
Sbjct: 342 V 342

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
147809623	482	hypothetical protein VITISV_018782 [Viti	0.968	0.970	0.743	1e-170
225449126	482	PREDICTED: protein IQ-DOMAIN 1-like [Vit	0.968	0.970	0.741	1e-170
449467523	482	PREDICTED: protein IQ-DOMAIN 1-like [Cuc	0.954	0.956	0.654	1e-145
224109704	443	predicted protein [Populus trichocarpa]	0.902	0.984	0.674	1e-143
255577665	461	conserved hypothetical protein [Ricinus	0.807	0.845	0.723	1e-142
225439898	479	PREDICTED: protein IQ-DOMAIN 1-like [Vit	0.958	0.966	0.620	1e-140
224069348	479	predicted protein [Populus trichocarpa]	0.948	0.956	0.558	1e-132
449486538	470	PREDICTED: protein IQ-DOMAIN 1-like [Cuc	0.927	0.953	0.624	1e-132
224140165	472	predicted protein [Populus trichocarpa]	0.933	0.955	0.564	1e-129
356565733	444	PREDICTED: protein IQ-DOMAIN 1-like [Gly	0.902	0.981	0.618	1e-128

>gi|147809623|emb|CAN66644.1| hypothetical protein VITISV_018782 [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 356/479 (74%), Positives = 396/479 (82%), Gaps = 11/479 (2%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGKKG+WFSAVKK LS E K+KKD+ T K KKKWFGK K+   V SS EN         P
Sbjct: 1   MGKKGNWFSAVKKALSPEPKEKKDKTTPKSKKKWFGKHKNLDPVSSSTENAMPLPAPAPP 60

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               ED KL E+EN+Q+KHAY+VALATAVAAEAAVAAA AAAEVVRLT V RF GKS+EE
Sbjct: 61  I---EDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAHAAAEVVRLTTVTRFSGKSKEE 117

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           +A IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQIRA
Sbjct: 118 VAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRA 177

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEEN A QRQLQ K +KE+EKLRA  +G++WD + +SKEQIEA LQ KQEAA+RR
Sbjct: 178 RRIRMSEENLALQRQLQLKRDKELEKLRA-SIGDDWDDSVQSKEQIEANLQSKQEAAVRR 236

Query: 241 ERALAYAFSNQML-RNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 296
           ERALAYAFS+Q   +NSSK ANPTFMDPNNPHWGWSWLERWMAARPWES S ++   N D
Sbjct: 237 ERALAYAFSHQQTWKNSSKPANPTFMDPNNPHWGWSWLERWMAARPWESRSAMEKELNTD 296

Query: 297 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 356
            +SLKS TSRA SI EIS+AY+RRDLN D K SPTA K SRPPS RQSPSTPPSKA S+S
Sbjct: 297 HASLKSTTSRAFSIGEISKAYARRDLNLDKKPSPTAQKPSRPPS-RQSPSTPPSKAQSSS 355

Query: 357 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 416
           S+TGK RP SPKGS WG D DSRS+ S++SE YRRHSIAGS + D+ESLASSP+VPSYMA
Sbjct: 356 SVTGKTRPASPKGSGWGADDDSRSMLSIQSEWYRRHSIAGSLVRDDESLASSPAVPSYMA 415

Query: 417 PTQSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLE 473
            T+ST+ARSR  SPLGL  NGTP+K S  SAKKRLSFP+SPAGPRRHSGPPRV+ S ++
Sbjct: 416 STESTRARSRLPSPLGLEKNGTPEKASGSSAKKRLSFPASPAGPRRHSGPPRVETSSIK 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449126|ref|XP_002277282.1| PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 355/479 (74%), Positives = 396/479 (82%), Gaps = 11/479 (2%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGKKG+WFSAVKK LS E K+KKD+ T K KKKWFGK K+   V SS EN         P
Sbjct: 1   MGKKGNWFSAVKKALSPEPKEKKDKTTPKSKKKWFGKHKNLDPVSSSTENAMPLPAPAPP 60

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               ED KL E+EN+Q+KHAY+VALATAVAAEAAVAAA AAAEVVRLT V RF GKS+EE
Sbjct: 61  I---EDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAHAAAEVVRLTTVTRFSGKSKEE 117

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           +A IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQIRA
Sbjct: 118 VAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRA 177

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEEN A QRQLQ K +KE+EKLRA  +G++WD + +SKEQIEA LQ KQEAA+RR
Sbjct: 178 RRIRMSEENLALQRQLQLKRDKELEKLRA-SMGDDWDDSVQSKEQIEANLQSKQEAAVRR 236

Query: 241 ERALAYAFSNQML-RNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 296
           ERALAYAFS+Q   +NSSK ANPTFMDPNNPHWGWSWLERWMAARPWES S ++   N D
Sbjct: 237 ERALAYAFSHQQTWKNSSKPANPTFMDPNNPHWGWSWLERWMAARPWESRSAMEKELNTD 296

Query: 297 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 356
            +SLKS TSRA SI EIS+AY+RRDLN D K SPTA K SRPPS RQSPSTPPSKA S+S
Sbjct: 297 HASLKSTTSRAFSIGEISKAYARRDLNLDKKPSPTAQKPSRPPS-RQSPSTPPSKAQSSS 355

Query: 357 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 416
           S+TGK +P SPKGS WG D DSRS+ S++SE YRRHSIAGS + D+ESLASSP+VPSYMA
Sbjct: 356 SVTGKTKPASPKGSGWGADDDSRSMLSIQSERYRRHSIAGSLVRDDESLASSPAVPSYMA 415

Query: 417 PTQSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLE 473
            T+ST+ARSR  SPLGL  NGTP+K S  SAKKRLSFP+SPAGPRRHSGPPRV+ S ++
Sbjct: 416 STESTRARSRLPSPLGLEKNGTPEKASGSSAKKRLSFPASPAGPRRHSGPPRVETSSIK 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467523|ref|XP_004151472.1| PREDICTED: protein IQ-DOMAIN 1-like [Cucumis sativus]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 317/484 (65%), Positives = 378/484 (78%), Gaps = 23/484 (4%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSE-ENLAVSV-PVP 58
           MGKKG WFSAVKK  + E K+KKDQKT K KK+WFGK K    V S+E  +  VS+ P+ 
Sbjct: 1   MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSILPI- 59

Query: 59  HPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQ 118
                 E+ KL ++EN+Q+KHAY+VA+ATAVAAEAAVAAAQAAAEVVRLT + R+ GKS+
Sbjct: 60  ------EEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSK 113

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           EEIA IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQI
Sbjct: 114 EEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQI 173

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
           RARRIRMSEENQA QRQLQQK E+E+E+L       EW+ + KSKEQIEA+L ++QEAA 
Sbjct: 174 RARRIRMSEENQALQRQLQQKHERELERL-TTSANYEWNDSTKSKEQIEARLANRQEAAT 232

Query: 239 RRERALAYAFSNQ-MLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDL 297
           RRERALAYA+S+Q   ++SSKSAN TFMDPNNP WGWSWLERWMAARPWE+ ST+D +D 
Sbjct: 233 RRERALAYAYSHQNSWKSSSKSANSTFMDPNNPRWGWSWLERWMAARPWETKSTMDYHDR 292

Query: 298 SSLKSATSRAMSIREISRAYSRRDLNHD----NKDSPTAHKLSRPPSRRQSPSTPPSKAP 353
            S+KS  S   SI +I++AY+RRDLN D       +PT+ K SR PS  QSP+T P+KA 
Sbjct: 293 GSVKSVISHTTSIGDIAKAYARRDLNLDIIKQFPRTPTSQKTSRAPS-HQSPAT-PTKAY 350

Query: 354 STSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPS 413
           S+ S   K++P SP+G  W GD DSRS  S++SE YRRHSIAGSS+ D+ES  SSPSVPS
Sbjct: 351 SSLSAGRKLKPDSPRGIGWSGDADSRSALSIKSERYRRHSIAGSSVRDDESFTSSPSVPS 410

Query: 414 YMAPTQSTKARSRGTSPLGLN---GTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDIS 470
           YMA T++ +ARSR +SP+G     GTP   S+G AKKRLSFP SPA  RRHSGPP+++ S
Sbjct: 411 YMASTEAARARSRLSSPMGTEKTAGTPG--SVG-AKKRLSFPGSPANSRRHSGPPKLEAS 467

Query: 471 PLED 474
           P+++
Sbjct: 468 PIKN 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109704|ref|XP_002315283.1| predicted protein [Populus trichocarpa] gi|222864323|gb|EEF01454.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 323/479 (67%), Positives = 367/479 (76%), Gaps = 43/479 (8%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGK+GSWFSA+KK L S +K   +++  +              V S EE +A S+  P  
Sbjct: 1   MGKRGSWFSALKKALGSSKKKWSEKEKNR-----------DLGVSSHEETVAPSLSPPRT 49

Query: 61  CSAD--EDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQ 118
                 ED KL E+EN+Q+KHAY+VALATAVAAEAAVAAAQAAAEVVRLT VA + GKS+
Sbjct: 50  PPPPTAEDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAQAAAEVVRLTTVAHYSGKSK 109

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           EEIA I+IQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQAT TLR MQTLARVQSQI
Sbjct: 110 EEIAAIRIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATATLRAMQTLARVQSQI 169

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
           RARRIRMSEEN+A QRQLQQK +KE+EKLR     ++WD + +SKE++EA L  KQEAA+
Sbjct: 170 RARRIRMSEENEALQRQLQQKHDKELEKLRT--SVKQWDDSPQSKEEVEASLLQKQEAAM 227

Query: 239 RRERALAYAFSN-QMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDL 297
           RRERALAYA+S+ QM + SSKSAN TFMDPNNP WGWSWLERWMAARPWES ST+DN D 
Sbjct: 228 RRERALAYAYSHQQMWKQSSKSANATFMDPNNPRWGWSWLERWMAARPWESRSTIDNNDR 287

Query: 298 SSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSS 357
           +S+KS TS                       SP A K SRPPS RQSPSTPPSKAPSTSS
Sbjct: 288 ASVKSTTS----------------------PSPGAQKSSRPPS-RQSPSTPPSKAPSTSS 324

Query: 358 ITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAP 417
           +TGK +PPSP+GS WGGD DSRS FSV+SE YRRHSIAGSS+ D+ESLASSPSVPSYMAP
Sbjct: 325 VTGKAKPPSPRGSAWGGDEDSRSTFSVQSERYRRHSIAGSSIRDDESLASSPSVPSYMAP 384

Query: 418 T--QSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPL 472
           T  QS KA+SR +SPLG+  NGTPDK S+G  KKRLSF +SPAG RRHSGPPRVD S +
Sbjct: 385 TRSQSAKAKSRLSSPLGIDNNGTPDKASVGYVKKRLSFSASPAGARRHSGPPRVDASAV 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577665|ref|XP_002529709.1| conserved hypothetical protein [Ricinus communis] gi|223530811|gb|EEF32675.1| conserved hypothetical protein [Ricinus communis]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 304/420 (72%), Positives = 344/420 (81%), Gaps = 30/420 (7%)

Query: 65  EDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVI 124
           ED KL E+E++Q+KHAY+VALATAVAAEAAVAAAQAAAEVVRLT+ A + GKS+EE+A I
Sbjct: 62  EDVKLTEAESEQSKHAYSVALATAVAAEAAVAAAQAAAEVVRLTSTACYCGKSREEVAAI 121

Query: 125 KIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIR 184
           KIQTAFRGYLARRALRALRGLVRLK+LIQG SVKRQA  TLR MQTLARVQSQIRARR R
Sbjct: 122 KIQTAFRGYLARRALRALRGLVRLKTLIQGQSVKRQAANTLRAMQTLARVQSQIRARRAR 181

Query: 185 MSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERAL 244
           MSEENQA QRQLQQK EKE+EKLR+  +GE+WD +A+SKEQ                   
Sbjct: 182 MSEENQALQRQLQQKREKELEKLRSA-IGEQWDDSAQSKEQ------------------- 221

Query: 245 AYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSAT 304
                 Q  +NSSKSAN TFMDPNNPHWGWSWLERWMAARPWES STVDN D +S+KS  
Sbjct: 222 ------QAWKNSSKSANATFMDPNNPHWGWSWLERWMAARPWESRSTVDNNDRASVKSTM 275

Query: 305 SRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSITGKVRP 364
           SRA+SI EISRAYSRRDL+HD K SP A K +R PS RQSPSTPPSKAPSTSS+TGK++P
Sbjct: 276 SRALSIGEISRAYSRRDLDHD-KPSPGAQKSTRLPS-RQSPSTPPSKAPSTSSVTGKIKP 333

Query: 365 PSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKAR 424
           PSP+GS WGGD DSRS+FSV+SE YRRHSIAGSS+ D+ESLASSPSVPSYMAPTQS KA+
Sbjct: 334 PSPRGSAWGGDDDSRSLFSVQSERYRRHSIAGSSVRDDESLASSPSVPSYMAPTQSAKAK 393

Query: 425 SRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEEK 482
           SR  SPLG+  +GT DK S+ SAKKRLSF  SPAG RRHSGPPRV+ S + + E+H+EE+
Sbjct: 394 SRLPSPLGVDKDGTRDKASVASAKKRLSFSGSPAGLRRHSGPPRVNSSIMNNIEMHIEEQ 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439898|ref|XP_002279479.1| PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 301/485 (62%), Positives = 361/485 (74%), Gaps = 22/485 (4%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MG+KG+W S+VKK LS E K+KKDQ+  K KKKWFGK K      SS E       VP P
Sbjct: 1   MGRKGNWLSSVKKALSPEPKEKKDQRADKSKKKWFGKHKYPDPNPSSLET------VPGP 54

Query: 61  CSAD-EDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQE 119
             A  E+ K IE +N+ +KH Y+VA  T +A+   +   +   EVV +T + +  GK++E
Sbjct: 55  SLAPPEEVKTIEPDNEHHKHVYSVAATTTMAS---LDVPETDVEVVEITTLTQSTGKAKE 111

Query: 120 EIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIR 179
           E A IKIQTAFRGYLARRALRALRGLVRL+SLIQG +VKRQA  TLRCMQTLARVQSQI 
Sbjct: 112 EAAAIKIQTAFRGYLARRALRALRGLVRLQSLIQGTAVKRQAANTLRCMQTLARVQSQIC 171

Query: 180 ARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIR 239
            RRIRMSEENQA QRQL QK  KE E+L+   +GEEWD + +SKEQIEA L +KQ AA+R
Sbjct: 172 YRRIRMSEENQALQRQLLQKQAKEFEQLK---MGEEWDDSLQSKEQIEAGLLNKQGAAMR 228

Query: 240 RERALAYAFSNQM-LRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NY 295
           RERALAYAFS+Q   +NSSKS N  FMDP+NPHWGWSWLERWMAARPWES ST D   N 
Sbjct: 229 RERALAYAFSHQQAWKNSSKSTNLLFMDPSNPHWGWSWLERWMAARPWESRSTTDKELNN 288

Query: 296 DLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPST 355
           D  S+KS  SR+++  EI++AY+R  L+  +K SPTA +    P  RQSPSTPPSKA S+
Sbjct: 289 DQLSIKSG-SRSITGGEITKAYARHLLD-SSKPSPTASQKPYHPPARQSPSTPPSKAVSS 346

Query: 356 SSITGKVRP-PSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSY 414
           SS  GK +P  SP+G+ WG D D++S+ S++SE +RRHSIAGSS+GD+ESLASSP+VPSY
Sbjct: 347 SSAAGKFKPAASPRGNLWGQDDDTKSMVSIQSERFRRHSIAGSSVGDDESLASSPAVPSY 406

Query: 415 MAPTQSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPL 472
           MAPT+S KA+SR  SPLGL  NGTP+K S G AKKRLSFP+SPA PRRHSGPPRV+ S L
Sbjct: 407 MAPTKSAKAKSRLQSPLGLENNGTPEKGSSGIAKKRLSFPASPARPRRHSGPPRVESSSL 466

Query: 473 EDSEV 477
            +  V
Sbjct: 467 TEGIV 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069348|ref|XP_002326336.1| predicted protein [Populus trichocarpa] gi|222833529|gb|EEE72006.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/478 (55%), Positives = 338/478 (70%), Gaps = 20/478 (4%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MG+KG WFS+VKK LS + K+KKDQK+ K KKKWFGKQ+      S E     S P P P
Sbjct: 1   MGRKGKWFSSVKKALSPDSKEKKDQKSNKSKKKWFGKQQLDSDSTSLENVTMRSPPPPQP 60

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               ++ KLIE+ N++N+H Y+V + TA  AE A    Q   EV + T V ++ GKS+EE
Sbjct: 61  ----DEVKLIETTNEENQHTYSVPVVTAAVAEHAPITVQTTTEVFQPTKVNKYAGKSKEE 116

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           +A IKIQTAFRGY+ARRALRALRGL RLKSL++G ++KRQAT TL CMQTLARVQSQI  
Sbjct: 117 VAAIKIQTAFRGYMARRALRALRGLFRLKSLMEGPTIKRQATHTLHCMQTLARVQSQIHT 176

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEENQA QRQL  +  KE E   +LQ+GEEWD + +SKEQIEA L +K EAA+RR
Sbjct: 177 RRIRMSEENQALQRQLLHEHAKEFE---SLQIGEEWDDSLQSKEQIEANLLNKFEAAVRR 233

Query: 241 ERALAYAFSNQML-RNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 296
           ERALAY+FS+Q   + SS++ NP FM   NP WGWSWLERWMAA PWES S  +   N D
Sbjct: 234 ERALAYSFSHQQAWKISSRAVNPMFMS-GNPSWGWSWLERWMAAHPWESRSMTEKELNND 292

Query: 297 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 356
            SSLKSA SR+++  +IS++Y+R  LN D K +P   +     +  Q  STP    P+ S
Sbjct: 293 HSSLKSA-SRSITGGDISKSYARYQLNSD-KLTPRESERPTKTANLQFQSTP--NKPAAS 348

Query: 357 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 416
           ++  K++  SP+    G D +S+SV SV+S+H RRHSIAGS + D+ESL SSP +PSYM 
Sbjct: 349 TVARKLKSASPRSGIGGLDDESKSVVSVQSDHSRRHSIAGSFVRDDESLGSSPPLPSYMV 408

Query: 417 PTQSTKARSRGTSPLG--LNGTPDKR--SLGSAKKRLSFPSSPAGPRRHSGPPRVDIS 470
           PT+S +A+SR  +PLG  +NG P+K   SLGSAKKRLS+P SPA  RR+SGPP+++ S
Sbjct: 409 PTESARAKSRLQNPLGAEMNGAPEKEKGSLGSAKKRLSYPPSPAKARRYSGPPKLESS 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486538|ref|XP_004157326.1| PREDICTED: protein IQ-DOMAIN 1-like [Cucumis sativus]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 303/485 (62%), Positives = 364/485 (75%), Gaps = 37/485 (7%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSE-ENLAVSV-PVP 58
           MGKKG WFSAVKK  + E K+KKDQKT K KK+WFGK K    V S+E  +  VS+ P+ 
Sbjct: 1   MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSILPI- 59

Query: 59  HPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQ 118
                 E+ KL ++EN+Q+KHAY+VA+ATAVAAEAAVAAAQAAAEVVRLT + R+ GKS+
Sbjct: 60  ------EEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSK 113

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           EEIA IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQI
Sbjct: 114 EEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQI 173

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
           RARRIRMSEENQA QRQLQQK E+E+E+L       EW+ + KSKEQIEA+L ++QEAA 
Sbjct: 174 RARRIRMSEENQALQRQLQQKHERELERL-TTSANYEWNDSTKSKEQIEARLANRQEAAT 232

Query: 239 RRERALAYAFSNQ-MLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS-----TV 292
           RRERALAYA+S+Q   ++SSKSAN TFMDPNNP WGWSWLERWMAARPWE+        +
Sbjct: 233 RRERALAYAYSHQNSWKSSSKSANSTFMDPNNPRWGWSWLERWMAARPWETKKRDQPHNL 292

Query: 293 DNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKA 352
           D     SL+ + S++   + +S+          + D P   K SR PS  QSP+T P+KA
Sbjct: 293 DRRHRQSLRPSRSQSRHHQAVSK----------DSDEP---KTSRAPS-HQSPAT-PTKA 337

Query: 353 PSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVP 412
            S+ S   K++P SP+G  W GD DSRS  S++SE YRRHSIAGSS+ D+ES  SSPSVP
Sbjct: 338 YSSLSAGRKLKPDSPRGIGWSGDADSRSALSIKSERYRRHSIAGSSVRDDESFTSSPSVP 397

Query: 413 SYMAPTQSTKARSRGTSPLGLN---GTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDI 469
           SYMA T++ +ARSR +SP+G     GTP   S+G AKKRLSFP SPA  RRHSGPP+++ 
Sbjct: 398 SYMASTEAARARSRLSSPMGTEKTAGTPG--SVG-AKKRLSFPGSPANSRRHSGPPKLEA 454

Query: 470 SPLED 474
           SP+++
Sbjct: 455 SPIKN 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140165|ref|XP_002323455.1| predicted protein [Populus trichocarpa] gi|222868085|gb|EEF05216.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 270/478 (56%), Positives = 338/478 (70%), Gaps = 27/478 (5%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MG+KG WFS+VKK LS + K+K DQK      KWFGKQ+      +S EN+ +  P P P
Sbjct: 1   MGRKGKWFSSVKKALSPDPKEKTDQK------KWFGKQQLDSDS-TSLENVTMLSPPPQP 53

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               E+ KLIE+ ++ N+H + V +ATA   E A    Q   EVV+LT V ++ GKS+EE
Sbjct: 54  ----EEVKLIETTDEVNQHTFPVPVATAAVPEPAPTTVQTNIEVVQLTKVNKYAGKSKEE 109

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
            A IKIQT FRGY+ARRALRALRGL RLK L++G  +KRQAT TLRCMQTLARVQSQI  
Sbjct: 110 EAAIKIQTTFRGYMARRALRALRGLARLKFLMEGPRIKRQATHTLRCMQTLARVQSQIHT 169

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEENQA QRQL QK  KE+E LR   +GEEWD + +SKEQIEA L +K EAA RR
Sbjct: 170 RRIRMSEENQALQRQLLQKHAKELENLR---IGEEWDDSLQSKEQIEASLLNKFEAATRR 226

Query: 241 ERALAYAFSN-QMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 296
           ERALAYAFS+ Q L+NSS+SANP FM+  NP WGWSWLERWMAA PWES S ++   N D
Sbjct: 227 ERALAYAFSHQQTLKNSSRSANPMFMN-GNPSWGWSWLERWMAAHPWESRSLMEKEHNND 285

Query: 297 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 356
            SS+KSA SR+++  EIS++Y+R  LN D K +P   +     +  QSPSTP  K P+ S
Sbjct: 286 HSSVKSA-SRSITGGEISKSYARYQLNSD-KLTPRESERPTKTTNLQSPSTP--KKPAAS 341

Query: 357 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 416
           ++  K++  SP+ +  G + DSRS+ SV+S+  RRHSIAGS + D+ESL SSP++PSYM 
Sbjct: 342 TVARKLKSASPRSNIGGIEDDSRSMVSVQSDRSRRHSIAGSFVRDDESLGSSPALPSYMV 401

Query: 417 PTQSTKARSRGTSPLGL--NGTPDKR--SLGSAKKRLSFPSSPAGPRRHSGPPRVDIS 470
           PTQS +A+SR  S LG   +GTP+K   S G  KKRLS+P SPA  RR+SGPP+++ S
Sbjct: 402 PTQSARAKSRIHSLLGAEKDGTPEKEKGSSGHTKKRLSYPPSPAKGRRYSGPPKLESS 459

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565733|ref|XP_003551092.1| PREDICTED: protein IQ-DOMAIN 1-like [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 295/477 (61%), Positives = 357/477 (74%), Gaps = 41/477 (8%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGKKGSWFSAVKKV SS+ K  K ++     KK    + +  AV        V  P+   
Sbjct: 1   MGKKGSWFSAVKKVFSSDSKKDKKKQKSDKSKKASSDKDAEAAV--------VLPPI--- 49

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               EDAKLIE+E +Q+KHA ++A ATAVAAEAAVAAAQAAAEVVRLT++  + G+++EE
Sbjct: 50  ----EDAKLIEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGRTKEE 105

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           IA IK+QTAFRGY+ARRALRALRGLVRLK+L+QG SVKRQA +TLR MQTLAR+QSQIR 
Sbjct: 106 IAAIKVQTAFRGYMARRALRALRGLVRLKTLVQGQSVKRQAASTLRSMQTLARLQSQIRE 165

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEENQA QRQL QK EKE+EKLRA  VGEEWD +++SKEQIEAKL H+QEAA+RR
Sbjct: 166 RRIRMSEENQALQRQLHQKHEKELEKLRAA-VGEEWDDSSQSKEQIEAKLLHRQEAALRR 224

Query: 241 ERALAYAFSNQML-RNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGST-VDNYDLS 298
           ERALAY+FS+Q   + SSKS NPTFMDPNNP WGWSWLERWMA RPW+  ST VD+ D +
Sbjct: 225 ERALAYSFSHQQTWKGSSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSTVVDHNDHA 284

Query: 299 SLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSI 358
           S+KSA SRA+S+ +I++ YS +    D K SP   K  RP     +P +  SKAPST+  
Sbjct: 285 SVKSAASRAVSVGQITKLYSLQ----DKKPSPFGSKARRP-----APQSSHSKAPSTN-- 333

Query: 359 TGKVRP-PSPKGSQ-WGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 416
            GK RP  S KGS  WGGD DSRS+FSV+SE YRRHSIAGSS+ D++SLAS+P++PSYMA
Sbjct: 334 -GKARPSSSTKGSSVWGGDEDSRSMFSVQSERYRRHSIAGSSVRDDDSLASTPAIPSYMA 392

Query: 417 PTQSTKARSRGTSPLGLNGTPDKRSLG---SAKKRLSF-PSSPAGPRRHSGPPRVDI 469
            T S KARS+      +  +P+K+  G   SA+KRLSF PSS A  RRHS PP+V++
Sbjct: 393 ATSSAKARSK-----IIRHSPEKKGGGGSVSARKRLSFSPSSAANSRRHSDPPKVEM 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.604	0.679	0.477	5.2e-79
TAIR|locus:2143503	461	iqd2 "AT5G03040" [Arabidopsis	0.629	0.659	0.414	1.9e-53
TAIR|locus:2066226	527	Iqd4 "AT2G26410" [Arabidopsis	0.436	0.400	0.431	6.7e-45
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.370	0.430	0.425	7.3e-38
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.349	0.400	0.437	1.9e-37
TAIR|locus:2134628	534	iqd17 "AT4G00820" [Arabidopsis	0.691	0.625	0.286	1.3e-36
TAIR|locus:2097478	517	IQD13 "AT3G59690" [Arabidopsis	0.302	0.282	0.378	2.1e-31
TAIR|locus:2200945	527	IQD18 "AT1G01110" [Arabidopsis	0.679	0.622	0.272	1.4e-30
TAIR|locus:2086385	259	IQD10 "AT3G15050" [Arabidopsis	0.341	0.637	0.410	1.4e-30
TAIR|locus:2043959	669	IQD14 "AT2G43680" [Arabidopsis	0.308	0.222	0.364	2e-30

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
 Identities = 149/312 (47%), Positives = 180/312 (57%)

Query:     1 MGKKGSWFSAVKKVLSSEXXXXXXXXXXXXXXXWFGKQKSSGAVLSSEENLAVSVPVPHP 60
             MGK  SWFSAVKK LS E               WFGK K      S     A S   P  
Sbjct:     1 MGK--SWFSAVKKALSPEPKQKKEQKPHKSKK-WFGKSKKLDVTNSGA---AYS---PRT 51

Query:    61 CSADEDAKLIESENKQNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARFPGKSQEE 120
                 +DAKL E E +Q++H                              ++RFPGKS EE
Sbjct:    52 V---KDAKLKEIEEQQSRHAYSVAIATAAAAEAAVAAAQAAAEVVRLSALSRFPGKSMEE 108

Query:   121 IAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
             IA IKIQTAFRGY               KSL+QG  V+RQAT+TL+ MQTLARVQ QIR 
Sbjct:   109 IAAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARVQYQIRE 168

Query:   181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
             RR+R+SE+ QA  RQLQQK  K+ +K      GE W+ +  S+E++EA + +KQ A +RR
Sbjct:   169 RRLRLSEDKQALTRQLQQKHNKDFDK-----TGENWNDSTLSREKVEANMLNKQVATMRR 223

Query:   241 ERALAYAFSNQML-RNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS-TVDNYDL- 297
             E+ALAYAFS+Q   +NS+K  + TFMDPNNPHWGWSWLERWMAARP E+ S T DN +  
Sbjct:   224 EKALAYAFSHQNTWKNSTKMGSQTFMDPNNPHWGWSWLERWMAARPNENHSLTPDNAEKD 283

Query:   298 SSLKSATSRAMS 309
             SS +S  SRAMS
Sbjct:   284 SSARSVASRAMS 295

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 134/323 (41%), Positives = 172/323 (53%)

Query:     1 MGKKGSWFSAVKKVLSSEXXXXXXXXXXXXXXXWFGKQKSSGAVLSSEENLAVSVPVPHP 60
             MGKK  WFS+VKK  S +                 G   +   V    +N+  S   P P
Sbjct:     1 MGKKAKWFSSVKKAFSPDSKKSKQKLAEGQN----GVISNPPVV----DNVRQSSSSPPP 52

Query:    61 CSADED---AKLIESENKQNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARFPGKS 117
               A  +   A++I   N+                                    RF GKS
Sbjct:    53 ALAPREVRVAEVIVERNRDLSPPSTADAVNVTATDVPVVPSSSAPGVVRRATPTRFAGKS 112

Query:   118 QEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
              EE A I IQT FRGY               K L++G  VKRQA  TL+CMQTL+RVQSQ
Sbjct:   113 NEEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQSQ 172

Query:   178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
             IRARRIRMSEENQA Q+QL QK  KE   L  L+ G+ W+ + +SKE++EA L  K EA 
Sbjct:   173 IRARRIRMSEENQARQKQLLQKHAKE---LAGLKNGDNWNDSIQSKEKVEANLLSKYEAT 229

Query:   238 IRRERALAYAFSNQM-LRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESG----STV 292
             +RRERALAY++S+Q   +N+SKS NP FMDP+NP WGWSWLERWMA RP ES     S  
Sbjct:   230 MRRERALAYSYSHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERWMAGRPLESSEKEQSNS 289

Query:   293 DNYDLSSLKSATSRAMSIREISR 315
             +N + +S+K + +R  + + ++R
Sbjct:   290 NNDNAASVKGSINRNEAAKSLTR 312

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2066226 Iqd4 "AT2G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 95/220 (43%), Positives = 135/220 (61%)

Query:   116 KSQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQ 175
             +S+EE A IKIQ A+R Y               KSL+QG  VKRQ    L  MQTL R+Q
Sbjct:   144 ESKEETAAIKIQNAYRCYTARRTLRALRGMARLKSLLQGKYVKRQMNAMLSSMQTLTRLQ 203

Query:   176 SQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQE 235
             +QI+ RR R+S EN+   R +QQK  ++ E  + L     +D + KSKEQI A+  +++E
Sbjct:   204 TQIQERRNRLSAENKTRHRLIQQKGHQK-ENHQNLVTAGNFDSSNKSKEQIVARSVNRKE 262

Query:   236 AAIRRERALAYAFSNQML-RNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDN 294
             A++RRERALAYA+S+Q   RNSSK  + T MD N   WGWSWLERWMA+RPW++ S  D 
Sbjct:   263 ASVRRERALAYAYSHQQTWRNSSKLPHQTLMDTNTTDWGWSWLERWMASRPWDAESIDDQ 322

Query:   295 YDL-------SSLKSATSRAMSIREISRAYSRRDLNHDNK 327
               +       +S+KS+ +R+ + +  S++  +  +N+D K
Sbjct:   323 VSVKSSLKRENSIKSSPARSKTQKSASQSSIQWPVNNDTK 362

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 85/200 (42%), Positives = 118/200 (59%)

Query:   110 VARFPGKS----QEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTL 165
             V R P K     +EE A I+IQTAFRG+               ++L++G  V++QA  TL
Sbjct:    70 VLRAPPKDFKAVREEWAAIRIQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVTL 129

Query:   166 RCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQ 225
             RCMQ L RVQ+++RARR+RM+ E QA Q+ L +   K  + L+  +V E W     + + 
Sbjct:   130 RCMQALVRVQARVRARRVRMTVEGQAVQKLLDEHRTKS-DLLK--EVEEGWCDRKGTVDD 186

Query:   226 IEAKLQHKQEAAIRRERALAYAFSNQMLRNSSKS---ANPTF-------MDPNNPHWGWS 275
             I++KLQ +QE A +RERALAYA + +  R+++ S    N +         D N+  WGWS
Sbjct:   187 IKSKLQQRQEGAFKRERALAYALAQKQWRSTTSSNLKTNSSISYLKSQEFDKNS--WGWS 244

Query:   276 WLERWMAARPWESG--STVD 293
             WLERWMAARPWE+    TVD
Sbjct:   245 WLERWMAARPWETRLMDTVD 264

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 77/176 (43%), Positives = 114/176 (64%)

Query:   116 KSQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQ 175
             +S+E  A  +IQTA+RG+               ++L++GH+V++QA  TLRCMQ L RVQ
Sbjct:    84 QSRENRAATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQ 143

Query:   176 SQIRARRIRMS-E-ENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHK 233
             +++RARR+R++ E E++  Q+ LQQ+   E    R  ++ E W  +  S EQI+AKL  +
Sbjct:   144 ARVRARRVRLALELESETSQQTLQQQLADEA---RVREIEEGWCDSIGSVEQIQAKLLKR 200

Query:   234 QEAAIRRERALAYAFSNQMLRNSSK-SANPTFMDPNNPHWGWSWLERWMAARPWES 288
             QEAA +RERA+AYA ++Q    +   SA+  F  P+  +WGW+WLERWMA RPWE+
Sbjct:   201 QEAAAKRERAMAYALTHQWQAGTRLLSAHSGFQ-PDKNNWGWNWLERWMAVRPWEN 255

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 105/367 (28%), Positives = 178/367 (48%)

Query:   117 SQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQS 176
             ++E+ A + IQT FRGY               ++L++GH+V++QA  TLRCMQ L RVQS
Sbjct:   129 AREDYAAVVIQTGFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQS 188

Query:   177 QIRARRIRMSEENQ---AF---QRQLQQKCEKEIEKLRALQ-----VGEEWDHTAKSKEQ 225
             ++  +R R+S +     AF   Q  L+ +  +EI   R++      + E+WD    + E+
Sbjct:   189 RVLDQRKRLSHDGSRKSAFSDTQSVLESRYLQEISDRRSMSREGSSIAEDWDDRPHTIEE 248

Query:   226 IEAKLQHKQEAAIRRE--RALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAA 283
             ++A LQ +++ A+RRE   +++ AFS+Q+ R     +     +   P     WL+RWMA+
Sbjct:   249 VKAMLQQRRDNALRRESNNSISQAFSHQVRRTRGSYSTGDEYEEERP----KWLDRWMAS 304

Query:   284 RPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLXXXXXXXX 343
             +PW+  ++ D   +  +        S   ++R  SR   +      P++           
Sbjct:   305 KPWDKRASTDQR-VPPVYKTVEIDTSQPYLTRGNSRTGASPSRSQRPSSPSRTSHHYQQH 363

Query:   344 XXXXXXXXXXXXXXITGKVRPPSPKGSQWGGDGDSRSVFSVRSE------HYRRHSIAGS 397
                           I  ++R  SP+  +     D RS ++  S       +Y   + +G 
Sbjct:   364 NFSSATPSPAKSRPI--QIRSASPRIQR-----DDRSAYNYTSNTPSLRSNYSFTARSGY 416

Query:   398 SMGDNESLASSPSVPSYMAPTQSTKARSRGTS-PLGLNGTPDKRSLGSAKKRLSFPSSPA 456
             S+    + A++ ++P+YMA T+S KAR R  S P     TP+K  + SA+KRLSFP  P 
Sbjct:   417 SVCTTTTTATNAALPNYMAITESAKARIRSQSAPRQRPSTPEKERISSARKRLSFPVPPL 476

Query:   457 GPRRHSG 463
              P++  G
Sbjct:   477 -PQQMDG 482

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097478 IQD13 "AT3G59690" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.1e-31, Sum P(3) = 2.1e-31
 Identities = 59/156 (37%), Positives = 95/156 (60%)

Query:   124 IKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRI 183
             IKIQ AFRGY               + +++GHSVKRQ    ++ MQ L RVQ+Q+++RRI
Sbjct:   173 IKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQVQSRRI 232

Query:   184 RMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERA 243
             +M E N+A       + +K+  KL + ++ ++WD +  +KE+ + +L  K +A I+RER+
Sbjct:   233 QMLE-NRA-------RNDKDDTKLVSSRMSDDWDDSVLTKEEKDVRLHRKIDAMIKRERS 284

Query:   244 LAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLER 279
             +AYA+S+Q+ +NS KSA         P W W+W++R
Sbjct:   285 MAYAYSHQLWKNSPKSAQD-IRTSGFPLW-WNWVDR 318

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
 Identities = 99/363 (27%), Positives = 167/363 (46%)

Query:   117 SQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQS 176
             ++E  A + IQT+FRGY               ++L++GH+V++QA  TLRCMQ L RVQS
Sbjct:   118 ARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQS 177

Query:   177 QIRARRIRMSEENQ---AFQ--------RQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQ 225
             ++  +R R+S +     AF         R LQ   +++          E+WD    + + 
Sbjct:   178 RVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDA 237

Query:   226 IEAKLQHKQEAAIRRERA-LAYAFSNQMLRN----SSKSANPTFMDPNNPHWGWSWLERW 280
             ++  LQ +++ A+R ++  L+ AFS +M R     S++  +   ++   P     WL+RW
Sbjct:   238 VKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELEEERP----KWLDRW 293

Query:   281 MAARPWESGSTVDNYDLSSLKSATS-RAMSIREISRAYSRRDLNHDNKDS-PTAHKLXXX 338
             MA RPW+  ++      +S+    S + + I + S+ YSR      ++   P++      
Sbjct:   294 MATRPWDKRAS----SRASVDQRVSVKTVEI-DTSQPYSRTGAGSPSRGQRPSSPSRTSH 348

Query:   339 XXXXXXXXXXXXXXXXXXXITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHS----I 394
                                I   +R  SP+  +   +   R+ +S  S      S     
Sbjct:   349 HYQSRNNFSATPSPAKSRPIL--IRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFT 406

Query:   395 AGSSMGDNESLASSPSV-PSYMAPTQSTKARSRGTS-PLGLNGTPDKRSLGSAKKRLSFP 452
             A S    + ++ ++ S+ P+YMA T+S KAR R  S P     TP++   G  KKRLS+P
Sbjct:   407 ARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYP 466

Query:   453 SSP 455
               P
Sbjct:   467 VPP 469

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2086385 IQD10 "AT3G15050" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 69/168 (41%), Positives = 102/168 (60%)

Query:   120 EIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQIR 179
             E+AVI+IQ AFR +                SLIQGH+V  Q +T L  + +   +Q+QIR
Sbjct:    50 EVAVIRIQKAFRAFKARKRLCSLKSARRFNSLIQGHTVMNQTSTALNVIHSWYDIQNQIR 109

Query:   180 ARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIR 239
             ARR+ M  + +   ++L+ + + EI KL  L+V  EW   +++ E+I AK+Q K+EA ++
Sbjct:   110 ARRLYMVTQGRLQHKRLENRLKLEI-KLHELEV--EWCGGSETMEEILAKIQQKEEATVK 166

Query:   240 RERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWE 287
             RERA+AYAFS+Q   N+++       +     WGWSW ERW+AARPWE
Sbjct:   167 RERAMAYAFSHQWRANATQYLGQASFNLGKESWGWSWKERWIAARPWE 214

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2043959 IQD14 "AT2G43680" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
 Identities = 59/162 (36%), Positives = 95/162 (58%)

Query:   119 EEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
             +  +  KIQ AFRGY               + +++G+SVKRQ    ++ MQ + RVQSQI
Sbjct:   322 QHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQI 381

Query:   179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEE-WDHTAKSKEQIEAKLQHKQEAA 237
             ++RRI+M E NQA       + EK+  K  A + G + WD +  +KE+ +++ Q K +A 
Sbjct:   382 QSRRIKMLE-NQA-------QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAI 433

Query:   238 IRRERALAYAFSNQMLRNSSKSANPTFMDPNNPHWGWSWLER 279
             I+RER++AYA+S ++ +NS KS      + + P W W+W++R
Sbjct:   434 IKRERSMAYAYSRKLWKNSPKSTQD---NRSFPQW-WNWVDR 471

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	483
pfam13178	105	pfam13178, DUF4005, Protein of unknown function (D	2e-09
COG1322	448	COG1322, COG1322, Predicted nuclease of restrictio	0.001
smart00015	23	smart00015, IQ, Calmodulin-binding motif	0.001
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	0.003

>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005)

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 383 SVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTS-PLGLNGTPDKRS 441
           S         S    S  D+ S  SSPS+P+YMA T+S KA+ R  S P     T ++ S
Sbjct: 9   SSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQRPETEERES 68

Query: 442 LGSAKKRLSFPSSPAGPRRHSG 463
             SA KRLS P S +     S 
Sbjct: 69  GSSATKRLSLPVSSSSGGSSSS 90

This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 16/158 (10%)

Query: 95  VAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLA-----RRALRALRGL---- 145
           V  A     ++RL  + +  G+     AV++       + A     R   R+L+ L    
Sbjct: 15  VNLAFIRQLLLRLGRLEQMLGELA---AVLEQLLLLLAFRAEAEQLRTFARSLQALNLEL 71

Query: 146 -VRLKSLIQGHSVKRQAT-TTLRCM-QTLARVQSQIRARRIRMSEENQAFQRQLQQKCEK 202
              L  L      +   +   L+ + ++LA++ S+ +     + EE      +L Q+  K
Sbjct: 72  IQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLK 131

Query: 203 EIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           ++ K    +V E++    + +    A+ +      I R
Sbjct: 132 QLLKPLR-EVLEKFREQLEQRIHESAEERSTLLEEIDR 168

Length = 448

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 35.8 bits (84), Expect = 0.001
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 118 QEEIAVIKIQTAFRGYLARRALR 140
           +   A I IQ A+RGYLAR+  +
Sbjct: 1   RLTRAAIIIQAAWRGYLARKRYK 23

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 35.0 bits (82), Expect = 0.003
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 122 AVIKIQTAFRGYLARRALR 140
           A IKIQ A+RGYLAR+  +
Sbjct: 3   AAIKIQAAWRGYLARKRYK 21

Calmodulin-binding motif. Length = 21

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	483
PF13178	102	DUF4005: Protein of unknown function (DUF4005)	99.52
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.91
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.39
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.17
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.55
PTZ00014	821	myosin-A; Provisional	95.6
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	95.25
COG5022	1463	Myosin heavy chain [Cytoskeleton]	92.96
KOG2128	1401	consensus Ras GTPase-activating protein family - I	90.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	89.92
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	89.91
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	88.61
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	83.81
smart00015	26	IQ Short calmodulin-binding motif containing conse	81.79
PTZ00014	821	myosin-A; Provisional	81.11

>PF13178 DUF4005: Protein of unknown function (DUF4005)

Probab=99.52  E-value=1.4e-14  Score=125.91  Aligned_cols=57  Identities=44%  Similarity=0.633  Sum_probs=49.5

Q ss_pred             CCCCCCCCccccccccCCCCCCC-CCCCCCCCcCCccCcccCCCCCCCCCCCCCCCCc
Q 011571          411 VPSYMAPTQSTKARSRGTSPLGL-NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRV  467 (483)
Q Consensus       411 ~PsYMa~TeSAKAK~R~qs~p~~-~~t~e~~~~~~~kkRlS~p~s~~~~rr~s~~pk~  467 (483)
                      +|||||+|||||||+|+||+|++ ++++|.+....++||||||.+.......+..++.
T Consensus        34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~   91 (102)
T PF13178_consen   34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT   91 (102)
T ss_pred             CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence            89999999999999999999999 8887776667889999999887777777777664

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.91  E-value=9.8e-06  Score=51.62  Aligned_cols=21  Identities=48%  Similarity=0.751  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHH
Q 011571          120 EIAVIKIQTAFRGYLARRALR  140 (483)
Q Consensus       120 e~AAI~IQsafRGylARRalr  140 (483)
                      +.|||.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999985

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.39  E-value=0.00013  Score=48.64  Aligned_cols=22  Identities=50%  Similarity=0.718  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHH
Q 011571          119 EEIAVIKIQTAFRGYLARRALR  140 (483)
Q Consensus       119 ee~AAI~IQsafRGylARRalr  140 (483)
                      ++.+|++||+.||||++|+.|+
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999999984

Calmodulin-binding motif.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.17  E-value=0.00063  Score=77.93  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571          118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       118 ree~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      ....+++.||..||||+.|+.|.. .++++-+|+++||.++|+.   ++ ...|++.+|..+|+...|+
T Consensus       671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~  735 (862)
T KOG0160|consen  671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRR  735 (862)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHH
Confidence            445678889999999999999998 5558899999999999981   11 3444444555544444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.55  E-value=0.0017  Score=74.90  Aligned_cols=73  Identities=23%  Similarity=0.375  Sum_probs=60.2

Q ss_pred             chhHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHhhhhcccchhhhHHHh------HH-hhhhHHHHHHHHHHHHHhhhhh
Q 011571          117 SQEEIAVIKIQTAFRGYLARRALRALRG-LVRLKSLIQGHSVKRQATTT------LR-CMQTLARVQSQIRARRIRMSEE  188 (483)
Q Consensus       117 ~ree~AAI~IQsafRGylARRalraLkg-iVrLQAlvRG~~VRrqa~~t------lr-~~qA~vriQs~vR~rr~R~~~~  188 (483)
                      ...-.||..||.-||||+.|+.|..++. +|++|+-|||+.+|+++...      ++ -+-++-++|+.+|+++.|...|
T Consensus       807 r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e  886 (975)
T KOG0520|consen  807 RSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE  886 (975)
T ss_pred             ccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence            3556789999999999999999999666 99999999999999999632      22 3456677999999998887654


Q ss_pred             h
Q 011571          189 N  189 (483)
Q Consensus       189 ~  189 (483)
                      .
T Consensus       887 ~  887 (975)
T KOG0520|consen  887 E  887 (975)
T ss_pred             c
Confidence            4

>PTZ00014 myosin-A; Provisional

Probab=95.60  E-value=0.0097  Score=68.59  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhH
Q 011571          121 IAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       121 ~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa  161 (483)
                      ..++.||++||||++|+.|.. +.++++||+.+||+++++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            368899999999999999998 66789999999999988764

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=95.25  E-value=0.031  Score=64.59  Aligned_cols=65  Identities=28%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571          118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       118 ree~AAI~IQsafRGylARRalraLkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      ....+++.||+.+||+++|+........+.+|..+|+++.|+++.   ....+++.+|+.+|+..+|.
T Consensus       694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~---~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYR---ALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence            567899999999999999983223445788999999999999994   46678999999999999998

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=92.96  E-value=0.18  Score=60.76  Aligned_cols=66  Identities=18%  Similarity=0.261  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHh
Q 011571          118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIR  184 (483)
Q Consensus       118 ree~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R  184 (483)
                      .-...+++||++|||++.||+|.. ++.+..+|.+.+|..+++.... ---....+.+|..++...-|
T Consensus       743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~r  809 (1463)
T COG5022         743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDY-ELKWRLFIKLQPLLSLLGSR  809 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccc-chHHHhHHHhhHHhHHHhhH
Confidence            456789999999999999999888 8888889999999988876643 22345566667666554433

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=90.22  E-value=0.41  Score=57.69  Aligned_cols=67  Identities=25%  Similarity=0.358  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHhhhhhh---HHHHH-H-HHHHHHHhhhhcccchhhhHHH----hHHhhhhHHHHHHHHHHHHHhh
Q 011571          119 EEIAVIKIQTAFRGYLA---RRALR-A-LRGLVRLKSLIQGHSVKRQATT----TLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       119 ee~AAI~IQsafRGylA---RRalr-a-LkgiVrLQAlvRG~~VRrqa~~----tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      ..-..+.||.++|||+.   +..+. . .+-+|.+|++.||+++|+.+..    -..||...+.+|+.+|++..|.
T Consensus       564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~  639 (1401)
T KOG2128|consen  564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK  639 (1401)
T ss_pred             cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence            55678899999999993   22222 2 6779999999999999999863    3458999999999999998876

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=89.92  E-value=0.86  Score=53.56  Aligned_cols=64  Identities=28%  Similarity=0.408  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHH-------HH-H---HHHhhhhcccchhhhHH----------------------HhHHh
Q 011571          121 IAVIKIQTAFRGYLARRALRAL-------RG-L---VRLKSLIQGHSVKRQAT----------------------TTLRC  167 (483)
Q Consensus       121 ~AAI~IQsafRGylARRalraL-------kg-i---VrLQAlvRG~~VRrqa~----------------------~tlr~  167 (483)
                      .=+|+||+++|||-.|+.|+.|       +- +   -++|+-+||+..|+-..                      .+.+-
T Consensus       834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~  913 (975)
T KOG0520|consen  834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL  913 (975)
T ss_pred             CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            3489999999999999999862       11 1   22367778877665432                      12233


Q ss_pred             hhhHHHHHHHHHHHHHh
Q 011571          168 MQTLARVQSQIRARRIR  184 (483)
Q Consensus       168 ~qA~vriQs~vR~rr~R  184 (483)
                      -+|+++||+.+|....+
T Consensus       914 ~~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  914 TRAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHHhcCHHHH
Confidence            47899999999887766

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=89.91  E-value=0.16  Score=32.22  Aligned_cols=19  Identities=11%  Similarity=0.282  Sum_probs=14.3

Q ss_pred             HHHHHHhhhhcccchhhhH
Q 011571          143 RGLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       143 kgiVrLQAlvRG~~VRrqa  161 (483)
                      +.+|.||+.+||+++|+++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            4567788888888888775

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=88.61  E-value=0.7  Score=52.82  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHH-HHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571          120 EIAVIKIQTAFRGYLARRALRALRGL-VRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       120 e~AAI~IQsafRGylARRalraLkgi-VrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      -.-++.||.+|||+++|..|+.++.. +.++ ..|.+-+          -..+..||..+|+.+.++
T Consensus       696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r  751 (1001)
T KOG0164|consen  696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMR  751 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhcc
Confidence            45688999999999999999997764 4444 4442222          234566888888887665

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=83.81  E-value=12  Score=43.57  Aligned_cols=34  Identities=35%  Similarity=0.642  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhh
Q 011571          119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI  152 (483)
Q Consensus       119 ee~AAI~IQsafRGylARRalra-LkgiVrLQAlv  152 (483)
                      ...+.+++|...||||+|++++- +-|++++-+|.
T Consensus       812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~  846 (1259)
T KOG0163|consen  812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINALL  846 (1259)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence            45678999999999999999988 77787776665

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=81.79  E-value=0.73  Score=30.52  Aligned_cols=19  Identities=11%  Similarity=0.277  Sum_probs=15.7

Q ss_pred             HHHHHHhhhhcccchhhhH
Q 011571          143 RGLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       143 kgiVrLQAlvRG~~VRrqa  161 (483)
                      +.++.||+.+||+++|+++
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4578889999999888886

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=81.11  E-value=2.2  Score=49.69  Aligned_cols=38  Identities=24%  Similarity=0.392  Sum_probs=33.0

Q ss_pred             HHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571          145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       145 iVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      ++.||+.+||++.|+.+.   +..++++.||+.+|++..++
T Consensus       780 ~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~~  817 (821)
T PTZ00014        780 VSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVIA  817 (821)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999984   35789999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	483
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-09
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 10/133 (7%), Positives = 39/133 (29%), Gaps = 7/133 (5%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQATTTLRCMQTLARV 174
               ++  +Q+    +   +          +  L+++      K +       +      
Sbjct: 785 DFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLT 844

Query: 175 QSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQ 234
            ++I +    + +  Q     L+ + +++ +    LQ  +        K +  A  +   
Sbjct: 845 PNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ--KYNR--ILKKLENWATTKSVY 900

Query: 235 EAAIRRERALAYA 247
             +     ++   
Sbjct: 901 LGSNETGDSITAV 913

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 13/124 (10%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 123 VIKIQTAFRGYLARRA----LRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           + +     +    ++A          +  ++S +  H  + + T      Q ++ +++  
Sbjct: 764 LKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH-KEYKKTEKPPKGQEVSELEAIY 822

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
            + + ++    +            EI+   +    E+ +       +IE K Q K    +
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSAL--EKAEQEHAEALRIELKRQKKIAVLL 880

Query: 239 RRER 242
           ++  
Sbjct: 881 QKYN 884

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 13/124 (10%), Positives = 38/124 (30%), Gaps = 1/124 (0%)

Query: 120 EIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIR 179
              V +++  +     +  L      V    L         +       +    ++ +++
Sbjct: 812 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELK 871

Query: 180 ARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIR 239
            R+ +++   Q + R L++       K   L   E  D     + +++       E    
Sbjct: 872 -RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL 930

Query: 240 RERA 243
             ++
Sbjct: 931 EGQS 934

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 10/135 (7%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQS 176
           +   A I IQ   R Y+ R+  + +R   + L++L++G+ + R     +        +Q 
Sbjct: 814 RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGY-LVRNKYQMMLREHKSIIIQK 872

Query: 177 QIRARRIRMSEENQAFQRQLQQKC------EKEIEKLRALQVGEEWDHTAKSKEQIEAKL 230
            +R    R+            Q C      ++E++KL+        +   K    +E K+
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA--RSVERYKKLHIGLENKI 930

Query: 231 QHKQEAAIRRERALA 245
              Q     + +   
Sbjct: 931 MQLQRKIDEQNKEYK 945

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 103 EVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQA 161
            ++R   V         E   I IQ   RG+LAR      L+ +V L+   +    KR+ 
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE- 905

Query: 162 TTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAK 221
              L+ ++  AR   + +   I +  EN+    QLQ+K +++ ++ ++L   E+ ++   
Sbjct: 906 ---LKKLKIEARSVERYKKLHIGL--ENK--IMQLQRKIDEQNKEYKSLL--EKMNNLEI 956

Query: 222 SKEQIEAKLQHKQEAAIRRERALAYAFSNQM 252
           +      KL+      +R     A   +N++
Sbjct: 957 TYSTETEKLR-SDVERLRMSEEEAKNATNRV 986

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 122 AVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           A I+IQ   RG+L R+    +R   + ++  ++GH  +  A T LR  +    +Q   R 
Sbjct: 770 ACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRM 828

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
             +R   +         Q   +        Q+      +   ++ +   L         +
Sbjct: 829 YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888

Query: 241 E 241
            
Sbjct: 889 A 889

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 5/137 (3%)

Query: 112 RFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTL 171
            F  + Q+  ++  IQ   R ++       +     +  L++    + +       +Q  
Sbjct: 810 AFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRT 869

Query: 172 ARVQSQIRARRIRMSEENQAFQRQ---LQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEA 228
              Q +  A    + +++     +   LQ+K + E E     +  E     A  K+++E 
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE--EMRVRLAAKKQELEE 927

Query: 229 KLQHKQEAAIRRERALA 245
            L   +      E    
Sbjct: 928 ILHEMEARIEEEEERSQ 944

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 3/125 (2%)

Query: 122 AVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQS-QIRA 180
            +I  Q   RGYLAR+A    +  +     IQ +            M     +       
Sbjct: 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVT 853

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           R+    +      ++ +++ +K   +L+ L+  ++     + K  ++ KLQ + E     
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELE--QKHTQLCEEKNLLQEKLQAETELYAEA 911

Query: 241 ERALA 245
           E    
Sbjct: 912 EEMRV 916

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 11/124 (8%), Positives = 39/124 (31%), Gaps = 9/124 (7%)

Query: 122 AVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           ++  +Q+    +   +          +  L+++      K +       +       ++I
Sbjct: 797 SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEI 856

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
            +    + +  Q     L+ + +++ +    LQ  +      +  +++E     K     
Sbjct: 857 DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ--KYN----RILKKLENWATTKSVYLG 910

Query: 239 RRER 242
             E 
Sbjct: 911 SNET 914

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 14/149 (9%), Positives = 41/149 (27%), Gaps = 11/149 (7%)

Query: 122 AVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSV---------KRQATTTLRCMQTLA 172
              K     R     + +   +  +  +                 + + T      Q ++
Sbjct: 765 EQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVS 824

Query: 173 RVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQH 232
            +++   + + ++    +            EI+   +    E+ +       +IE K Q 
Sbjct: 825 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSAL--EKAEQEHAEALRIELKRQK 882

Query: 233 KQEAAIRRERALAYAFSNQMLRNSSKSAN 261
           K    +++   +     N     S    +
Sbjct: 883 KIAVLLQKYNRILKKLENWATTKSVYLGS 911

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 50/348 (14%), Positives = 92/348 (26%), Gaps = 86/348 (24%)

Query: 1   MGKKGSWFSAVKKVLSSEQ-KDKKDQKTIKLKKKW--FGKQKSSGAVLSSEENLAV---- 53
           +   G      K  ++ +     K Q  +  K  W       S   VL   + L      
Sbjct: 158 VLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 54  --------SVPVPHPCSADEDAKLIESENKQNKHAYTVAL-----ATAVAA--------- 91
                   S  +     + +       ++K  ++   V L     A A  A         
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILL 270

Query: 92  ---EAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRA--LR--ALRG 144
                 V    +AA    ++        + +E+  +        YL  R   L    L  
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCRPQDLPREVLTT 325

Query: 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQ--AFQRQLQQKC-- 200
             R  S+I   S++    T          V        I  S      A  R++  +   
Sbjct: 326 NPRRLSII-AESIRDGLATW----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 201 --------EKEIEKLRALQVGEEW-DHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQ 251
                      +  +        W D        +  KL HK     ++ +    +  + 
Sbjct: 381 FPPSAHIPTILLSLI--------WFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSI 431

Query: 252 MLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS----TVDNY 295
            L    K  N   +     H   S ++ +   + ++S       +D Y
Sbjct: 432 YLELKVKLENEYAL-----H--RSIVDHYNIPKTFDSDDLIPPYLDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	483
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.9
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.61
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.46
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.44
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.97
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.86
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	97.55
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	96.6
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.6
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	96.52
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.2
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.19
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	96.13
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.38
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	92.0
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	91.22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.74
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	86.25

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.90  E-value=1.1e-09  Score=84.09  Aligned_cols=53  Identities=23%  Similarity=0.403  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHhhhhcccchhhhHHHhHHhhhhH
Q 011571          118 QEEIAVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTL  171 (483)
Q Consensus       118 ree~AAI~IQsafRGylARRalraLk-giVrLQAlvRG~~VRrqa~~tlr~~qA~  171 (483)
                      +.+.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++...|+
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence            57889999999999999999999955 69999999999999999943 4444443

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.61  E-value=2.6e-08  Score=73.57  Aligned_cols=42  Identities=19%  Similarity=0.376  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHH---HHHHHhhhhcccchhhhH
Q 011571          120 EIAVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       120 e~AAI~IQsafRGylARRalraLk---giVrLQAlvRG~~VRrqa  161 (483)
                      ..|||.||+.||||++|+.|..++   ..+.||+.+||+++|+.+
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            458999999999999999998843   678888888888888865

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.46  E-value=1.8e-07  Score=107.44  Aligned_cols=66  Identities=27%  Similarity=0.404  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571          120 EIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (483)
Q Consensus       120 e~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~  186 (483)
                      ..||++||+.||||++|+.|+. ..+++.||+.+||+++|+.+. .++...|++.||+.+|++..|+.
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~  834 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKR  834 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHH
Confidence            5799999999999999999999 456899999999999999984 57788999999999999999875

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.44  E-value=1.4e-07  Score=108.51  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             chhHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571          117 SQEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (483)
Q Consensus       117 ~ree~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~  186 (483)
                      .+++.||++||+.||||++|+.|.. +.+++.||+.+||+++|+++.. ++...+++.||+.+|++..|+.
T Consensus       813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~  882 (1080)
T 2dfs_A          813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVH  882 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHH
T ss_pred             cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999998 5558999999999999998843 4555667777777776666654

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.97  E-value=3.2e-06  Score=58.44  Aligned_cols=25  Identities=40%  Similarity=0.620  Sum_probs=22.2

Q ss_pred             CchhHHHHHHHHHHhhhhhhHHHHH
Q 011571          116 KSQEEIAVIKIQTAFRGYLARRALR  140 (483)
Q Consensus       116 ~~ree~AAI~IQsafRGylARRalr  140 (483)
                      ..+||.||+.||.|||+||.|+.+.
T Consensus         2 rk~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            2 PGSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3579999999999999999998764

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.86  E-value=4.4e-06  Score=56.09  Aligned_cols=23  Identities=43%  Similarity=0.732  Sum_probs=20.6

Q ss_pred             chhHHHHHHHHHHhhhhhhHHHH
Q 011571          117 SQEEIAVIKIQTAFRGYLARRAL  139 (483)
Q Consensus       117 ~ree~AAI~IQsafRGylARRal  139 (483)
                      .+||.||+.||.|||+||.|+.+
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~~   25 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQKV   25 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            57999999999999999998753

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=97.55  E-value=8e-05  Score=54.66  Aligned_cols=42  Identities=17%  Similarity=0.274  Sum_probs=37.1

Q ss_pred             HHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571          143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       143 kgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      +.++.||+.+||+++|+++. .++...|++.||+.+||..+|.
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~-~~~~~~aai~IQ~~~Rg~~~Rk   45 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVN-DEMKVNCATLLQAAYRGHSIRA   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHH
Confidence            56899999999999999994 4666789999999999998875

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=96.60  E-value=0.0019  Score=49.13  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=35.4

Q ss_pred             HHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571          143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (483)
Q Consensus       143 kgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~  186 (483)
                      ...+.||+.+||+++|+.+..   ...+++.||+.+||+.+|..
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~   46 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCY   46 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999943   34699999999999988874

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.60  E-value=0.0017  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHH
Q 011571          120 EIAVIKIQTAFRGYLARRALRA  141 (483)
Q Consensus       120 e~AAI~IQsafRGylARRalra  141 (483)
                      ...++.||+..|||++|+.|..
T Consensus         6 ~~i~t~~Qa~~RG~l~R~~~~k   27 (64)
T 1wdc_A            6 SKIISMFQAHIRGYLIRKAYKK   27 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666666666654

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.52  E-value=0.0017  Score=50.49  Aligned_cols=43  Identities=26%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571          121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       121 ~AAI~IQsafRGylARRalraLkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      ..++.||+..|||++|+.|..                      .+....|+..||..+|++..++
T Consensus         5 ~i~t~~Qa~~RG~l~R~~~~k----------------------~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            5 EIVKVVQAAARGWVERKHFRQ----------------------AREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhc
Confidence            345566666666666666554                      3334445556666666665544

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.20  E-value=0.0026  Score=71.72  Aligned_cols=43  Identities=30%  Similarity=0.375  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHHH----HHHHHHhhhhcccchhhhH
Q 011571          119 EEIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       119 ee~AAI~IQsafRGylARRalraL----kgiVrLQAlvRG~~VRrqa  161 (483)
                      -..+|+.||++|||||+|+.|+.+    ..++.||..+||+++||..
T Consensus       778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            345788999999999999999875    3467777777777777665

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.19  E-value=0.0047  Score=48.03  Aligned_cols=42  Identities=14%  Similarity=0.166  Sum_probs=38.0

Q ss_pred             HHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571          145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (483)
Q Consensus       145 iVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~  186 (483)
                      ++.+||.+||+++|+.+...+....|+..||..+|++..++.
T Consensus         9 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            9 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            789999999999999999888888999999999999887653

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.13  E-value=0.0041  Score=48.31  Aligned_cols=15  Identities=7%  Similarity=0.217  Sum_probs=7.6

Q ss_pred             HHHhhhhcccchhhh
Q 011571          146 VRLKSLIQGHSVKRQ  160 (483)
Q Consensus       146 VrLQAlvRG~~VRrq  160 (483)
                      +.+||.+||+++|+.
T Consensus         8 t~~Qa~~RG~l~R~~   22 (63)
T 2bl0_A            8 KVVQAAARGWVERKH   22 (63)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445555555555543

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.13  E-value=0.0043  Score=56.69  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhh
Q 011571          119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI  152 (483)
Q Consensus       119 ee~AAI~IQsafRGylARRalra-LkgiVrLQAlv  152 (483)
                      ...|+|+||++.||||+|+.++- +.|++++.+|.
T Consensus        44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            57789999999999999999998 89999998874

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.38  E-value=0.075  Score=61.66  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHH----HHHHHHhhhhcccchhhhH
Q 011571          120 EIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       120 e~AAI~IQsafRGylARRalraL----kgiVrLQAlvRG~~VRrqa  161 (483)
                      ..+|+.||+.||||++|+.|..+    .+++.||..+||++.++..
T Consensus       792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            36799999999999999999884    4689999999999999874

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=92.00  E-value=0.085  Score=49.02  Aligned_cols=25  Identities=40%  Similarity=0.627  Sum_probs=22.4

Q ss_pred             chhHHHHHHHHHHhhhhhhHHHHHH
Q 011571          117 SQEEIAVIKIQTAFRGYLARRALRA  141 (483)
Q Consensus       117 ~ree~AAI~IQsafRGylARRalra  141 (483)
                      .+|+.||+.||.+||.|+.|+.+..
T Consensus       127 ~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          127 KHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc
Confidence            4789999999999999999988765

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=91.22  E-value=0.22  Score=56.25  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=37.4

Q ss_pred             HHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571          144 GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (483)
Q Consensus       144 giVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~  186 (483)
                      -++.||+.+||+++|+.+...+....|++.||..+|++..|+.
T Consensus       781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~  823 (837)
T 1kk8_A          781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN  823 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3688999999999999997766667899999999999988763

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.74  E-value=0.62  Score=54.07  Aligned_cols=44  Identities=7%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             HHH-HHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571          142 LRG-LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (483)
Q Consensus       142 Lkg-iVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~  185 (483)
                      +.. ++.||+.+||+++|+.+...+....|++.||+.+|++..++
T Consensus       791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k  835 (1184)
T 1i84_S          791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVX  835 (1184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444 68899999999999999876667789999999999998775

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=86.25  E-value=0.38  Score=54.03  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHH
Q 011571          119 EEIAVIKIQTAFRGYLARRALRALRG  144 (483)
Q Consensus       119 ee~AAI~IQsafRGylARRalraLkg  144 (483)
                      ...+|+.||++||||++|+.|+.++.
T Consensus       767 l~~~~~~iQ~~~Rg~l~R~~~~~~r~  792 (795)
T 1w7j_A          767 LRAACIRIQKTIRGWLMRKKYMRMRR  792 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	483
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	7e-04
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.002

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 5/42 (11%), Positives = 18/42 (42%)

Query: 112 RFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQ 153
            +    +   ++  IQ   R ++  +    ++   ++K L++
Sbjct: 753 EYRAMVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLI 152
            + I +  IQ   R +L  R  +  +   ++K L+
Sbjct: 755 DQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 789

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	483
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	96.74
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.66
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.11
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	90.33
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.57

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.74  E-value=0.00031  Score=75.83  Aligned_cols=43  Identities=30%  Similarity=0.405  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHH----HHHHHhhhhcccchhhhH
Q 011571          119 EEIAVIKIQTAFRGYLARRALRALR----GLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       119 ee~AAI~IQsafRGylARRalraLk----giVrLQAlvRG~~VRrqa  161 (483)
                      ...+|+.||+.||||++|+.|+.+|    .++.+|..+||+++||.+
T Consensus       730 l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         730 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3568999999999999999999865    467778888888888776

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.66  E-value=0.0005  Score=74.22  Aligned_cols=43  Identities=16%  Similarity=0.236  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHHH----HHHHHHhhhhcccchhhhH
Q 011571          119 EEIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA  161 (483)
Q Consensus       119 ee~AAI~IQsafRGylARRalraL----kgiVrLQAlvRG~~VRrqa  161 (483)
                      ...+|+.||+.||||++|+.|+.+    ..++.||+.+||+++||.+
T Consensus       734 l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         734 LAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            356899999999999999999763    3578888888888888776

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.11  E-value=0.043  Score=58.73  Aligned_cols=44  Identities=7%  Similarity=0.045  Sum_probs=38.4

Q ss_pred             HHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571          143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (483)
Q Consensus       143 kgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~  186 (483)
                      +.++.||+.+||+++|+++...+....|++.||+.+|++..|+-
T Consensus       736 ~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~  779 (794)
T d2mysa2         736 EIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH  779 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34789999999999999998777777899999999999988763

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=90.33  E-value=0.14  Score=54.65  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=35.9

Q ss_pred             HHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571          144 GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (483)
Q Consensus       144 giVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~  186 (483)
                      .++.||+.+||+++|+++........+++.||+.+|++..|+.
T Consensus       733 ~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~  775 (789)
T d1kk8a2         733 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN  775 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3678899999999999997544455689999999999988764

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.57  E-value=0.084  Score=55.73  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=22.0

Q ss_pred             hhHHHHHHHHHHhhhhhhHHHHHHHH
Q 011571          118 QEEIAVIKIQTAFRGYLARRALRALR  143 (483)
Q Consensus       118 ree~AAI~IQsafRGylARRalraLk  143 (483)
                      ....+||+||+.||||++||.|..+|
T Consensus       704 ~l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         704 KLRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34568999999999999999998764