Citrus Sinensis ID: 011578
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | 2.2.26 [Sep-21-2011] | |||||||
| O22025 | 293 | Protein cfxQ homolog OS=C | N/A | no | 0.410 | 0.675 | 0.403 | 5e-37 | |
| O22034 | 286 | Protein cfxQ homolog OS=C | N/A | no | 0.410 | 0.692 | 0.408 | 5e-37 | |
| P51228 | 301 | Protein cfxQ homolog OS=P | N/A | no | 0.410 | 0.657 | 0.412 | 2e-35 | |
| P49826 | 291 | Protein cfxQ homolog OS=O | N/A | no | 0.402 | 0.666 | 0.409 | 2e-35 | |
| Q9TLY2 | 301 | Protein cfxQ homolog OS=C | N/A | no | 0.410 | 0.657 | 0.393 | 2e-34 | |
| P95648 | 309 | Protein CbbX OS=Rhodobact | yes | no | 0.564 | 0.880 | 0.350 | 3e-34 | |
| Q9MS99 | 305 | Protein cfxQ homolog OS=G | N/A | no | 0.396 | 0.626 | 0.406 | 3e-34 | |
| Q1XDQ9 | 300 | Protein cfxQ homolog OS=P | N/A | no | 0.410 | 0.66 | 0.398 | 6e-34 | |
| P27643 | 322 | Stage V sporulation prote | yes | no | 0.387 | 0.580 | 0.388 | 9e-34 | |
| Q04540 | 317 | Protein CbxX, plasmid OS= | yes | no | 0.398 | 0.605 | 0.405 | 1e-33 |
| >sp|O22025|CFXQ_CYAME Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 129/208 (62%), Gaps = 10/208 (4%)
Query: 192 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLG 250
++ + +D+L+ EL +GL +K ++R+ A +L+D R+ LGL + P HM+F G
Sbjct: 19 TQIQEVLDDLDREL---IGLQTVKTRIREIAALLLVDRLRQKLGL--SSSNPGLHMSFTG 73
Query: 251 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGIL 310
+PGTGKT VAR + +LY +G + + V R DLVG+++GHT PKT++ +K A GG+L
Sbjct: 74 SPGTGKTTVARKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKQVLKNAMGGVL 133
Query: 311 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 368
F+DEAY L + +++DYG EA+E ++ VM+ + +V+IFAGY + M R SN G
Sbjct: 134 FIDEAYYL--YRPDNERDYGAEAIEILLQVMENQRDDLVIIFAGYKDKMDRFYTSNPGLA 191
Query: 369 RRVTKFFHFNDFNSEELAKILHIKMNNQ 396
RV +F D+ EEL I I + Q
Sbjct: 192 SRVANHVNFPDYTPEELLMIGKIMLQEQ 219
|
Necessary for the expression of RuBisCO. Cyanidioschyzon merolae (taxid: 45157) |
| >sp|O22034|CFXQ2_CYACA Protein cfxQ homolog OS=Cyanidium caldarium GN=cfxQ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 129/208 (62%), Gaps = 10/208 (4%)
Query: 192 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLG 250
++ + +D+L+ EL +GL +K ++R+ A +L+D R+ LGL + P HM+F G
Sbjct: 12 TQIQQVLDDLDREL---IGLQAVKTRIREIAALLLVDRLRQKLGL--SSSNPGLHMSFTG 66
Query: 251 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGIL 310
+PGTGKT VA + +LY +G + + V R DLVG+++GHT PKT++ +K A GG+L
Sbjct: 67 SPGTGKTTVATKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKQVLKNAMGGVL 126
Query: 311 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 368
F+DEAY L + +++DYG EA+E ++ VM+ + +V+IFAGY E M R ASN G
Sbjct: 127 FIDEAYYL--YRPDNERDYGAEAIEILLQVMENQRDDLVIIFAGYKEKMDRFYASNPGLS 184
Query: 369 RRVTKFFHFNDFNSEELAKILHIKMNNQ 396
RV +F D+ EEL I I + Q
Sbjct: 185 SRVANHVNFPDYTPEELLMIGKIMLQEQ 212
|
Necessary for the expression of RuBisCO. Cyanidium caldarium (taxid: 2771) |
| >sp|P51228|CFXQ_PORPU Protein cfxQ homolog OS=Porphyra purpurea GN=cfxQ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 8/206 (3%)
Query: 195 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 253
K ++ E+ NEL+ ++GL +K ++R+ A +L+D R+ L L V HM+F G+PG
Sbjct: 22 KTQIQEVLNELNQELIGLVPVKTRIREIAALLLIDRLRRKLEL-VSGNPGLHMSFTGSPG 80
Query: 254 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 313
TGKT VA + +L+ +G + + V R DLVG+++GHT PKT+ +K+A GG+LF+D
Sbjct: 81 TGKTTVAMKMADILHRLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFID 140
Query: 314 EAYRLIPMQKAD-DKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 370
EAY L KAD ++DYG EA+E ++ VM+ + +VVIFAGY + M++ SN G R
Sbjct: 141 EAYYLY---KADNERDYGSEAIEILLQVMENQRNDLVVIFAGYKDRMEKFYESNPGLSSR 197
Query: 371 VTKFFHFNDFNSEELAKILHIKMNNQ 396
V F D+ SEEL +I + + Q
Sbjct: 198 VANHVDFPDYTSEELLQIAKMMIEEQ 223
|
Necessary for the expression of RuBisCO. Porphyra purpurea (taxid: 2787) |
| >sp|P49826|CFXQ_ODOSI Protein cfxQ homolog OS=Odontella sinensis GN=cfxQ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 11/205 (5%)
Query: 196 AKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP--HMAFLGNPG 253
AK+ L NE +VGL +K ++R+ A +L+D+ RK LG+ G+ P HM+F G+PG
Sbjct: 20 AKILNLLNE--ELVGLVPVKSRIREIAALLLIDKLRKNLGITAGS---PGLHMSFTGSPG 74
Query: 254 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 313
TGKT V + +L+ +G + + V R DLVG+++GHT PKT+ +K+A GG+LF+D
Sbjct: 75 TGKTTVGLKMSDILFQLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFID 134
Query: 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRV 371
EAY L + +++DYG EA+E ++ VM+ + +VVI AGY EPM + SN G R+
Sbjct: 135 EAYYL--YKPDNERDYGSEAIEILLQVMENQRDDLVVILAGYKEPMDKFYESNPGLSSRI 192
Query: 372 TKFFHFNDFNSEELAKILHIKMNNQ 396
F D+ EEL KI + + Q
Sbjct: 193 ANHIDFPDYTVEELLKISKMMLEEQ 217
|
Necessary for the expression of RuBisCO. Odontella sinensis (taxid: 2839) |
| >sp|Q9TLY2|CFXQ1_CYACA Protein cfxQ homolog OS=Cyanidium caldarium GN=cfxQ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 127/206 (61%), Gaps = 8/206 (3%)
Query: 195 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNP 252
K K+ E+ ++L+ ++GL +K ++R+ A +L+D R+ +GL + P HM+F G P
Sbjct: 25 KTKIQEVLDDLNQELIGLKPVKNRIREIAALLLVDRLRQKVGL--SSSNPGLHMSFTGPP 82
Query: 253 GTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFV 312
GTGKT VA + +LY + + + V R DLVG+++GHT PKT+ +K+A GG+LF+
Sbjct: 83 GTGKTTVATKMADILYKLNYIKKGHLVTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFI 142
Query: 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 370
DEAY L + +++DYG EA+E ++ VM+ + +V+IFAGY E M + ASN G R
Sbjct: 143 DEAYYL--YKPDNERDYGSEAIEILLQVMENQREDLVIIFAGYKEKMDKFYASNPGLASR 200
Query: 371 VTKFFHFNDFNSEELAKILHIKMNNQ 396
V F ++ EEL KI + + Q
Sbjct: 201 VANHVDFPEYRPEELLKIAEMMLQEQ 226
|
Necessary for the expression of RuBisCO. Cyanidium caldarium (taxid: 2771) |
| >sp|P95648|CBBX_RHOSH Protein CbbX OS=Rhodobacter sphaeroides GN=cbbX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 154/291 (52%), Gaps = 19/291 (6%)
Query: 186 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 244
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 14 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 245 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 303
HM+F GNPGTGKT VA + LL+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 304 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 361
A GG+LF+DEAY L + +++DYG EA+E ++ VM+ + +VVI AGY++ M+
Sbjct: 128 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185
Query: 362 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421
SN GF R+ F D++ EEL +I +++Q Y + ++ A L
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----YQMTPEAETALRAYIGLRR 240
Query: 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472
+ R + L L A N S LD L T+ ED+ A
Sbjct: 241 NQPHFANARSIRNALDRARLRQA--NRLFTASSGPLDARALSTMAEEDIRA 289
|
Seems to be necessary for the expression of RuBisCO. Rhodobacter sphaeroides (taxid: 1063) |
| >sp|Q9MS99|CFXQ_GALSU Protein cfxQ homolog OS=Galdieria sulphuraria GN=cfxQ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 124/197 (62%), Gaps = 6/197 (3%)
Query: 195 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 253
K K+ E+ N+L ++GL +K ++++ A +L+D+ R L L A HM+F G+PG
Sbjct: 28 KTKIQEVLNQLDKELIGLTPVKNRIKEIAALLLIDKLRIKLNLP-QANPGLHMSFTGSPG 86
Query: 254 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 313
TGKT VA + +LY++G + + V R DLVG+++GHT PKT+ +K A GG+LF+D
Sbjct: 87 TGKTTVATKMADILYLLGYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFID 146
Query: 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRV 371
EAY L + +++DYG EA+E ++ VM+ + +VVI AGY + M+R SN G R+
Sbjct: 147 EAYYL--YKPDNERDYGSEAIEILLQVMENQRNDLVVILAGYKDKMERFYQSNPGLSSRI 204
Query: 372 TKFFHFNDFNSEELAKI 388
T F D+ +EEL +I
Sbjct: 205 TNHVDFPDYTAEELLEI 221
|
Necessary for the expression of RuBisCO. Galdieria sulphuraria (taxid: 130081) |
| >sp|Q1XDQ9|CFXQ_PORYE Protein cfxQ homolog OS=Porphyra yezoensis GN=cfxQ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 128/206 (62%), Gaps = 8/206 (3%)
Query: 195 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 253
+ ++ E+ NEL+ ++GL +K ++R+ A +L+D R+ L L V HM+F G+PG
Sbjct: 21 RTQIQEVLNELNQELIGLVPVKTRIREIAALLLIDRLRRKLEL-VSGNPGLHMSFTGSPG 79
Query: 254 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 313
TGKT VA + +L+ +G + + V R DLVG+++GHT PKT+ +K+A GG+LF+D
Sbjct: 80 TGKTTVAMKMADILHRLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFID 139
Query: 314 EAYRLIPMQKAD-DKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 370
EAY L KAD ++DY EA+E ++ VM+ + +VVIFAGY + M++ SN G R
Sbjct: 140 EAYYLY---KADNERDYDSEAIEILLQVMENQRNDLVVIFAGYKDRMEKFYESNPGLSSR 196
Query: 371 VTKFFHFNDFNSEELAKILHIKMNNQ 396
V F D+ S+EL +I + + Q
Sbjct: 197 VANHVDFPDYTSDELLQIAKMMIEEQ 222
|
Necessary for the expression of RuBisCO. Porphyra yezoensis (taxid: 2788) |
| >sp|P27643|SP5K_BACSU Stage V sporulation protein K OS=Bacillus subtilis (strain 168) GN=spoVK PE=2 SV=3 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 121/193 (62%), Gaps = 6/193 (3%)
Query: 198 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKT 257
+ E+E E+S +VG+ E+K +++ + ++++R GLKVG ++ HM F GNPGTGKT
Sbjct: 48 LKEIEKEMSALVGMEEMKRNIKEIYAWIFVNQKRAEQGLKVG-KQALHMMFKGNPGTGKT 106
Query: 258 MVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYR 317
VAR++G+L + + +L + E +R DLVGE++GHT KTR IK++ GGILF+DEAY
Sbjct: 107 TVARLIGKLFFEMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLIKKSLGGILFIDEAYS 166
Query: 318 LIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRVTKFF 375
L + +KD+G EA++ ++ M+ + ++I AGYS M ++ N G R
Sbjct: 167 L---ARGGEKDFGKEAIDTLVKHMEDKQHEFILILAGYSREMDHFLSLNPGLQSRFPISI 223
Query: 376 HFNDFNSEELAKI 388
F D++ +L +I
Sbjct: 224 DFPDYSVTQLMEI 236
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q04540|CBXXP_CUPNH Protein CbxX, plasmid OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbxXP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 10/202 (4%)
Query: 190 ACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAF 248
A S + +L+ EL +GL +K ++R A +L+D+ R A G GA P HM F
Sbjct: 29 ASSGITELLAQLDREL---IGLKPVKARIRDIAALLLVDKLRAARGFSAGA--PSLHMCF 83
Query: 249 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 308
GNPGTGKT VA + ++L+ +G + + V R DLVG+++GHT PKT+ +K+A GG
Sbjct: 84 TGNPGTGKTTVAMRMAQILHQLGYVRRGHLVAVTRDDLVGQYIGHTAPKTKEILKKALGG 143
Query: 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 366
+LF+DEAY L + +++DYG EA+E ++ VM+ + +VVI AGY + M R SN G
Sbjct: 144 VLFIDEAYYL--YRPENERDYGQEAIEILLQVMENNRDDLVVILAGYKDRMDRFFESNPG 201
Query: 367 FCRRVTKFFHFNDFNSEELAKI 388
RV F D+ +EL +I
Sbjct: 202 MSSRVAHHVDFPDYQLDELRQI 223
|
Seems to be necessary for the expression of RuBisCO. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| 255546479 | 481 | Protein cbxX, chromosomal, putative [Ric | 0.979 | 0.981 | 0.864 | 0.0 | |
| 225445236 | 484 | PREDICTED: caseinolytic peptidase B prot | 0.989 | 0.985 | 0.846 | 0.0 | |
| 356520543 | 480 | PREDICTED: protein CbxX, chromosomal-lik | 0.985 | 0.989 | 0.837 | 0.0 | |
| 356531267 | 484 | PREDICTED: protein CbxX, chromosomal-lik | 0.985 | 0.981 | 0.831 | 0.0 | |
| 357500765 | 479 | Ankyrin repeat domain-containing protein | 0.989 | 0.995 | 0.823 | 0.0 | |
| 224119764 | 478 | predicted protein [Populus trichocarpa] | 0.989 | 0.997 | 0.834 | 0.0 | |
| 224143544 | 477 | predicted protein [Populus trichocarpa] | 0.987 | 0.997 | 0.826 | 0.0 | |
| 449459838 | 479 | PREDICTED: ESX-1 secretion system protei | 0.989 | 0.995 | 0.821 | 0.0 | |
| 18404228 | 481 | AAA-type ATPase family protein / ankyrin | 0.987 | 0.989 | 0.789 | 0.0 | |
| 21553510 | 481 | rubisco expression protein, putative [Ar | 0.987 | 0.989 | 0.789 | 0.0 |
| >gi|255546479|ref|XP_002514299.1| Protein cbxX, chromosomal, putative [Ricinus communis] gi|223546755|gb|EEF48253.1| Protein cbxX, chromosomal, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/473 (86%), Positives = 444/473 (93%), Gaps = 1/473 (0%)
Query: 6 DRRSRSAKPAT-IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
D+RSRS+K T IHG AQSGDLLAFQ+LLR NPSLLNERNPVMAQTPLHVSAG N+AEIV
Sbjct: 7 DQRSRSSKQVTTIHGFAQSGDLLAFQKLLRVNPSLLNERNPVMAQTPLHVSAGNNRAEIV 66
Query: 65 KSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 124
K+LLEW G +KVELEA+NMYGETPLHMAAKNGCNEAA+LLLAHGAF+E+KANNGMTPLHL
Sbjct: 67 KTLLEWQGPEKVELEAKNMYGETPLHMAAKNGCNEAARLLLAHGAFVESKANNGMTPLHL 126
Query: 125 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 184
+VWYSIRS+D++TVKTLLEYNADCSAKDNEG TP++HLS GPGS KLR+LL WH +EQRK
Sbjct: 127 AVWYSIRSDDFSTVKTLLEYNADCSAKDNEGMTPMNHLSRGPGSEKLRQLLQWHIDEQRK 186
Query: 185 RRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP 244
RRALEACSETKAKM+ELEN LSNIVGLHELKIQLRKWAKGMLLDERR ALGLKVG RRPP
Sbjct: 187 RRALEACSETKAKMEELENALSNIVGLHELKIQLRKWAKGMLLDERRMALGLKVGVRRPP 246
Query: 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE 304
HMAFLGNPGTGKTMVARILGRLL++VGILPTDRVTEVQRTDLVGEFVGHTGPKTR++IKE
Sbjct: 247 HMAFLGNPGTGKTMVARILGRLLHLVGILPTDRVTEVQRTDLVGEFVGHTGPKTRKKIKE 306
Query: 305 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASN 364
AEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GKVVVIFAGYS+PMKRVIASN
Sbjct: 307 AEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKVVVIFAGYSKPMKRVIASN 366
Query: 365 EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424
EGFCRRVTKFF F+DF E+LAKI+HIKMNNQ ED LLYGF LHS CSM+AIA LIE++T
Sbjct: 367 EGFCRRVTKFFQFDDFTPEDLAKIIHIKMNNQEEDGLLYGFNLHSKCSMEAIAKLIERKT 426
Query: 425 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
TEKQR+EMNGGL D MLVNARENLD RL FDC+DT+ELRTITLEDLEAGL+LL
Sbjct: 427 TEKQRKEMNGGLADTMLVNARENLDSRLDFDCIDTEELRTITLEDLEAGLRLL 479
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445236|ref|XP_002280965.1| PREDICTED: caseinolytic peptidase B protein homolog [Vitis vinifera] gi|297738825|emb|CBI28070.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/477 (84%), Positives = 449/477 (94%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
MQ+ D+RSRS+KP TIHGCAQSGDLLA Q+LLR NPSLLN+RNPVMAQTPLHVS+GYN
Sbjct: 1 MQRPLDQRSRSSKPTTIHGCAQSGDLLALQKLLRGNPSLLNDRNPVMAQTPLHVSSGYNN 60
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120
EIVK LL W G +KVELEA+NMYGETPLHMAAKNGCN AA+LLLAHGA +EAKANNGMT
Sbjct: 61 VEIVKFLLNWQGPEKVELEAKNMYGETPLHMAAKNGCNAAAQLLLAHGAIVEAKANNGMT 120
Query: 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180
PLHL+VWYS+R+ED +TVKTLL+YNADCS+KDNEG TPL+HLS GPGS KLRELL + +
Sbjct: 121 PLHLAVWYSLRAEDCSTVKTLLDYNADCSSKDNEGMTPLNHLSQGPGSEKLRELLHRYLD 180
Query: 181 EQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA 240
EQ KRRALEACSETKAKMDELE+ LSNIVGL++LK QLR+WAKGMLLDERRKALGLKVG+
Sbjct: 181 EQIKRRALEACSETKAKMDELEDALSNIVGLNDLKSQLRRWAKGMLLDERRKALGLKVGS 240
Query: 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR 300
R+PPHMAFLGNPGTGKTMVAR+LGRLL+MVG+LPTD+VTEVQRTDLVGEFVGHTGPKTRR
Sbjct: 241 RKPPHMAFLGNPGTGKTMVARVLGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTRR 300
Query: 301 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360
+IKEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GKVVVIFAGYSEPMKRV
Sbjct: 301 KIKEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKVVVIFAGYSEPMKRV 360
Query: 361 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 420
I+SNEGFCRRVTKFFHF DFNS+ELAKIL++KMNNQTEDSLLYGF+LH SCS+D++AALI
Sbjct: 361 ISSNEGFCRRVTKFFHFGDFNSQELAKILNLKMNNQTEDSLLYGFRLHPSCSVDSVAALI 420
Query: 421 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
E+ETTEKQR+EMNGGLVDPMLVNARENLDLRLSF+C+DTDEL TIT+EDLEAGL LL
Sbjct: 421 ERETTEKQRKEMNGGLVDPMLVNARENLDLRLSFECIDTDELLTITIEDLEAGLSLL 477
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520543|ref|XP_003528921.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/475 (83%), Positives = 442/475 (93%)
Query: 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE 62
++QD+RSR AKPATIHGCA SGDL+ QRLLR+NPSLLNERNPVMAQTPLHVSAG+N+ E
Sbjct: 4 RSQDQRSRPAKPATIHGCALSGDLVGLQRLLRDNPSLLNERNPVMAQTPLHVSAGHNRTE 63
Query: 63 IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122
IVK LL+W G DKVE+EA+NMYGETPLHMAAKNGCNEAA+LLLA GA +EA+ANNGMTPL
Sbjct: 64 IVKFLLDWQGTDKVEMEAKNMYGETPLHMAAKNGCNEAAQLLLACGATVEARANNGMTPL 123
Query: 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182
HL+VWYS+R+E++ TVKTLLEYNADCSAKD+EG TPL+HLS GPG+ KLRELLLWH EEQ
Sbjct: 124 HLAVWYSLRAEEFLTVKTLLEYNADCSAKDDEGMTPLNHLSQGPGTEKLRELLLWHLEEQ 183
Query: 183 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 242
RK+RA+EACSETKAKMDELE ELSNIVGL++LK+QLRKWAKGMLLDE+R++LGL VG RR
Sbjct: 184 RKQRAIEACSETKAKMDELEKELSNIVGLNDLKVQLRKWAKGMLLDEKRRSLGLHVGRRR 243
Query: 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 302
PPHMAFLGNPGTGKTMVARILG+LL+MVGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+I
Sbjct: 244 PPHMAFLGNPGTGKTMVARILGKLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRKI 303
Query: 303 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 362
KEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+VVIFAGY EPMKRVIA
Sbjct: 304 KEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYCEPMKRVIA 363
Query: 363 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422
SNEGFCRRVTKFF FNDFNSEELA+ILHIKMNN EDSLLYGF LH C + A+AALIE+
Sbjct: 364 SNEGFCRRVTKFFQFNDFNSEELAQILHIKMNNLAEDSLLYGFMLHPDCCIKALAALIER 423
Query: 423 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
ETTEKQR+E NGGLVD MLVNARENLDLRLSFDC+DT+EL TITL DLEAGL+ L
Sbjct: 424 ETTEKQRKETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTITLVDLEAGLQQL 478
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531267|ref|XP_003534199.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/475 (83%), Positives = 444/475 (93%)
Query: 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE 62
++QD+RSR AK ATIHGCA SGDL+ QRLLR+NPSLLNERNPVMAQTPLHVSAG+N+ E
Sbjct: 8 RSQDQRSRPAKAATIHGCALSGDLVGLQRLLRDNPSLLNERNPVMAQTPLHVSAGHNRTE 67
Query: 63 IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122
IVK LL+W G DKVE+EA+NMYGETPLHMAAKNGCN+AA+LLLA GA +EA+ANNGMTPL
Sbjct: 68 IVKFLLDWQGADKVEMEAKNMYGETPLHMAAKNGCNKAAQLLLARGAIVEARANNGMTPL 127
Query: 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182
HL+VWYS+R+E++ TVKTLLEYNADCSAKD+EG TPL+HLS GPG+ KLRELLLWH EEQ
Sbjct: 128 HLAVWYSLRAEEFLTVKTLLEYNADCSAKDDEGMTPLNHLSQGPGTEKLRELLLWHLEEQ 187
Query: 183 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 242
RK+RA+EACSETKAKMDELE +LSNIVGL++LK+QLRKWAKGMLLDE+R++LGL VG RR
Sbjct: 188 RKQRAIEACSETKAKMDELEKQLSNIVGLNDLKVQLRKWAKGMLLDEKRRSLGLHVGRRR 247
Query: 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 302
PPHMAFLGNPGTGKTMVARILG+LL+ VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+I
Sbjct: 248 PPHMAFLGNPGTGKTMVARILGKLLHTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRKI 307
Query: 303 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 362
KEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+VVIFAGYS+PMKRVI
Sbjct: 308 KEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYSKPMKRVIT 367
Query: 363 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422
SNEGFCRRVTKFF FNDFNSEELA+ILHIKMNN EDSLLYGFKLH+ CS+ ++AALIE+
Sbjct: 368 SNEGFCRRVTKFFQFNDFNSEELAQILHIKMNNLAEDSLLYGFKLHTDCSIKSLAALIER 427
Query: 423 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
ETTEKQR+E NGGLVD MLVNARENLDLRLSFDC+DT+EL TITL DLEAGL+LL
Sbjct: 428 ETTEKQRQETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTITLVDLEAGLQLL 482
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500765|ref|XP_003620671.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355495686|gb|AES76889.1| Ankyrin repeat domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/477 (82%), Positives = 443/477 (92%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
M ++QD+RSR AKPATIH CA SGDL+ Q+LLR+NPSLLN++NPVMA TPLHVSAG N+
Sbjct: 1 MNRSQDQRSRPAKPATIHSCALSGDLIGLQKLLRDNPSLLNDKNPVMAHTPLHVSAGNNR 60
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120
A+IVK LLEW G+++VE+EA+NMYGETPLHMAAKNGC+EAA+LLLAHGA IEA+ANNGMT
Sbjct: 61 ADIVKFLLEWQGSERVEIEAKNMYGETPLHMAAKNGCSEAAQLLLAHGASIEARANNGMT 120
Query: 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180
PLHL+VW+S+R+E++ TVKTLLE+NADCSAKDNEG TPL+HLS GPG+ KLRELL WH E
Sbjct: 121 PLHLAVWHSLRAEEFLTVKTLLEHNADCSAKDNEGMTPLNHLSQGPGNDKLRELLNWHLE 180
Query: 181 EQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA 240
EQRKRRA++ACSETKAKMDELE ELSNIVGL++LKIQLRKWAKGMLLDERR+ALGL VG
Sbjct: 181 EQRKRRAIKACSETKAKMDELEKELSNIVGLNDLKIQLRKWAKGMLLDERRRALGLHVGT 240
Query: 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR 300
RRPPHMAFLGNPGTGKTMVARILGRLL+MVGILPTD+VTEVQRTDLVGEFVGHTGPKTR+
Sbjct: 241 RRPPHMAFLGNPGTGKTMVARILGRLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRK 300
Query: 301 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360
+I+EAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+VVIFAGYSEPMKRV
Sbjct: 301 KIQEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYSEPMKRV 360
Query: 361 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 420
IASNEGFCRRVTKFFHF DF+S ELA ILHIKMNN E SLLYGFKLHS+CS+ AI ALI
Sbjct: 361 IASNEGFCRRVTKFFHFIDFSSAELATILHIKMNNLAEGSLLYGFKLHSNCSIKAIEALI 420
Query: 421 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
++ETTEKQR+E NGGLVD M++NARENLDLRLSFDC+DT+EL TITLEDLEAGL L
Sbjct: 421 QRETTEKQRKETNGGLVDTMMINARENLDLRLSFDCIDTEELLTITLEDLEAGLGFL 477
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119764|ref|XP_002331155.1| predicted protein [Populus trichocarpa] gi|222873238|gb|EEF10369.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/478 (83%), Positives = 439/478 (91%), Gaps = 1/478 (0%)
Query: 1 MQKN-QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN 59
MQ+N Q + SR +KPATIH CAQSGDLL FQRLL NP LLNERNPVMAQTPLHVSAGYN
Sbjct: 1 MQRNRQGQGSRISKPATIHSCAQSGDLLGFQRLLSGNPYLLNERNPVMAQTPLHVSAGYN 60
Query: 60 KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM 119
+AEI+K LL+W G +KVELE +NMYGETPLHMAAKNGC+EAA+LLLAHGA IEAKANNGM
Sbjct: 61 RAEIIKFLLDWQGAEKVELEPRNMYGETPLHMAAKNGCSEAARLLLAHGAIIEAKANNGM 120
Query: 120 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179
TPLHL+VWYSIR ED++TVKTLLEYNADCSA+DNEG TPL+HLS GP S +L +LL WH
Sbjct: 121 TPLHLAVWYSIRVEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGPRSEELCKLLQWHL 180
Query: 180 EEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVG 239
EEQRKR+ALEACS+TKAKMDELE+ LSN+VGLH+LKIQLRKWAKGMLLDERR+ALG+KVG
Sbjct: 181 EEQRKRKALEACSKTKAKMDELEDALSNVVGLHDLKIQLRKWAKGMLLDERRRALGMKVG 240
Query: 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR 299
RRPPHMAFLG+PGTGKTMVARILGRLL+MVG+LPTD+VTEVQRTDLVGEFVGHTGPKTR
Sbjct: 241 LRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTR 300
Query: 300 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR 359
R+I EAEGGILFVDEAYRLIP QK D+KDYGIEALEEIMSVMD GKVVVIFAGYSEPMKR
Sbjct: 301 RKIAEAEGGILFVDEAYRLIPSQKQDEKDYGIEALEEIMSVMDSGKVVVIFAGYSEPMKR 360
Query: 360 VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419
VI+SNEGFCRRVTKFFHFNDF+SE+LA I HIKMNNQ E S LYGFKLHSSCS DAIAAL
Sbjct: 361 VISSNEGFCRRVTKFFHFNDFSSEDLANICHIKMNNQDEGSSLYGFKLHSSCSGDAIAAL 420
Query: 420 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
I++ETTEKQRREMNGGLV+ ML NARE LDLRL F+C+DTDEL+TITLEDLEAG +LL
Sbjct: 421 IKRETTEKQRREMNGGLVNVMLTNARETLDLRLDFNCIDTDELQTITLEDLEAGCQLL 478
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143544|ref|XP_002324992.1| predicted protein [Populus trichocarpa] gi|222866426|gb|EEF03557.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/478 (82%), Positives = 441/478 (92%), Gaps = 2/478 (0%)
Query: 1 MQKN-QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN 59
MQ++ QD SRS+KPATIH AQSGDLL FQRLLR +PSLLNERNPVMAQTPLHVSAGYN
Sbjct: 1 MQRDRQDHGSRSSKPATIHSYAQSGDLLGFQRLLRGDPSLLNERNPVMAQTPLHVSAGYN 60
Query: 60 KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM 119
+A+I+K LL+W G +KVELE +NM +TPLHMAAKNGC EAA+LLLAHGAF+EAKANNGM
Sbjct: 61 RADIIKFLLDWQGAEKVELEPRNM-AKTPLHMAAKNGCTEAARLLLAHGAFVEAKANNGM 119
Query: 120 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179
TPLHL+VWYSIR+ED++TVKTLLEYNADCSA+DNEG TPL+HLS GPGS ++R+LL WH
Sbjct: 120 TPLHLAVWYSIRAEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGPGSEEVRKLLHWHL 179
Query: 180 EEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVG 239
EEQRKR+ALEACS+TKAKMDELE+ L+N+VGLHELK+QLRKWAKGMLLDERR+ALG+KVG
Sbjct: 180 EEQRKRKALEACSKTKAKMDELEDALTNVVGLHELKVQLRKWAKGMLLDERRRALGMKVG 239
Query: 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR 299
RRPPHMAFLG+PGTGKTMVARILGRLL+MVG+LPTD+VTEVQRTDLVGEFVGHTGPKTR
Sbjct: 240 MRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTR 299
Query: 300 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR 359
R+I EAEGGILFVDEAYRLIP QK DDKDYGIEALEEIMSVMD GKVVVIFAGYSEPMKR
Sbjct: 300 RKIAEAEGGILFVDEAYRLIPSQKEDDKDYGIEALEEIMSVMDSGKVVVIFAGYSEPMKR 359
Query: 360 VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419
VI+SNEGFCRRVTKFFHFNDF+S++LA I HI MN Q E S LYGFKLH SC +DAIAAL
Sbjct: 360 VISSNEGFCRRVTKFFHFNDFSSKDLANICHINMNTQDEGSPLYGFKLHPSCCVDAIAAL 419
Query: 420 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
IE+ETTEKQRREMNGGLV+ ML NARENLDLRL F+CLDTDEL+TIT+EDLEAGL+LL
Sbjct: 420 IERETTEKQRREMNGGLVNTMLANARENLDLRLDFNCLDTDELQTITIEDLEAGLQLL 477
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459838|ref|XP_004147653.1| PREDICTED: ESX-1 secretion system protein EccA1-like [Cucumis sativus] gi|449498823|ref|XP_004160644.1| PREDICTED: ESX-1 secretion system protein EccA1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/477 (82%), Positives = 437/477 (91%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
MQK QD+R RS KP TIHG AQSGD+L+ Q+LLRENP LLNERNP M QTPLHVSAGYN+
Sbjct: 1 MQKPQDQRLRSTKPTTIHGYAQSGDILSLQKLLRENPGLLNERNPFMGQTPLHVSAGYNR 60
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120
AEIV LL W G + VELEA+NMYGETPLHMAAKNGCN+AA++LLAHGAF+EAKANNGMT
Sbjct: 61 AEIVTFLLAWKGPENVELEAKNMYGETPLHMAAKNGCNDAARVLLAHGAFVEAKANNGMT 120
Query: 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180
PLHL+VWYS++SED TVKTLL+YNADCSA D EG TPL+HLS S KLRELL H E
Sbjct: 121 PLHLAVWYSLQSEDCETVKTLLDYNADCSATDEEGMTPLNHLSQSSCSKKLRELLNRHLE 180
Query: 181 EQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA 240
EQRK++A+EACSETKAKM ELENELS+IVGLHELKIQL+KWAKGMLLDERR+ALGLKVG
Sbjct: 181 EQRKQKAIEACSETKAKMKELENELSHIVGLHELKIQLQKWAKGMLLDERRRALGLKVGT 240
Query: 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR 300
RR PHMAFLGNPGTGKTMVARILG+LL+MVGILPTD+VTEVQRTDLVGEFVGHTGPKTRR
Sbjct: 241 RRSPHMAFLGNPGTGKTMVARILGKLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRR 300
Query: 301 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360
+IKEAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+VVIFAGY EPMKRV
Sbjct: 301 KIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKIVVIFAGYCEPMKRV 360
Query: 361 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 420
I SNEGF RRVTKFF+FNDF+S+ELA ILHIKM+NQTEDSLLYGFKLH +C+++AI+ LI
Sbjct: 361 IDSNEGFHRRVTKFFYFNDFSSKELANILHIKMDNQTEDSLLYGFKLHPTCTIEAISDLI 420
Query: 421 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
E+ET EK+R+EMNGGLVDPMLVNARENLD RLSF+C+DT+ELRTIT+EDLEAGL+LL
Sbjct: 421 ERETEEKRRKEMNGGLVDPMLVNARENLDGRLSFECIDTEELRTITMEDLEAGLRLL 477
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18404228|ref|NP_566752.1| AAA-type ATPase family protein / ankyrin repeat family protein [Arabidopsis thaliana] gi|13507553|gb|AAK28639.1|AF360342_1 putative rubisco expression protein [Arabidopsis thaliana] gi|15293291|gb|AAK93756.1| putative rubisco expression protein [Arabidopsis thaliana] gi|332643395|gb|AEE76916.1| AAA-type ATPase family protein / ankyrin repeat family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 423/476 (88%)
Query: 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
Q +R RSA+P TIH CA SGDL+A QRLL++NPSLLNERNPVM TPLHVSAG
Sbjct: 4 QNGGGQRLRSARPTTIHDCALSGDLIALQRLLKDNPSLLNERNPVMYHTPLHVSAGNGNV 63
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
+IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL GAFIEAKA+NGMTP
Sbjct: 64 DIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLESGAFIEAKASNGMTP 123
Query: 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181
LHL+VWYSI +++ +TVKTLL++NADCSAKDNEG TPLDHL G GS KLRELL W +E
Sbjct: 124 LHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQGSEKLRELLRWFLQE 183
Query: 182 QRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGAR 241
QRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGMLLDERR+ALGL +G R
Sbjct: 184 QRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTR 243
Query: 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR 301
RPPHMAFLGNPGTGKTMVAR+LG+LL VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+
Sbjct: 244 RPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRK 303
Query: 302 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVI 361
I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+VVIFAGYSEPMKRVI
Sbjct: 304 IQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGKIVVIFAGYSEPMKRVI 363
Query: 362 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421
ASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+LH SC++ IA+LIE
Sbjct: 364 ASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFRLHESCTLQEIASLIE 423
Query: 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI LEDLEAGL++
Sbjct: 424 AETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTIKLEDLEAGLRVF 479
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21553510|gb|AAM62603.1| rubisco expression protein, putative [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 423/476 (88%)
Query: 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
Q +R RSA+P TIH CA SGDL+A QRLLR+NPSLLNERNPVM TPLHVSAG
Sbjct: 4 QNGGGQRLRSARPTTIHDCALSGDLIALQRLLRDNPSLLNERNPVMYHTPLHVSAGNGNV 63
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
+IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL GAFIEAKA+NGMTP
Sbjct: 64 DIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLESGAFIEAKASNGMTP 123
Query: 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181
LHL+VWYSI +++ +TVKTLL++NADCSAKDNEG TPLDHL G GS KLRELL W +E
Sbjct: 124 LHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQGSEKLRELLRWFLQE 183
Query: 182 QRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGAR 241
QRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGMLLDERR+ALGL +G R
Sbjct: 184 QRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTR 243
Query: 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR 301
RPPHMAFLGNPGTGKTMVAR+LG+LL VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+
Sbjct: 244 RPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRK 303
Query: 302 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVI 361
I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSV+D GK+VVIFAGYSEPMKRVI
Sbjct: 304 IQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVIDTGKIVVIFAGYSEPMKRVI 363
Query: 362 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421
ASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+LH SC++ IA+LIE
Sbjct: 364 ASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFRLHESCTLQEIASLIE 423
Query: 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477
ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI LEDLEAGL++
Sbjct: 424 AETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTIKLEDLEAGLRVF 479
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| TAIR|locus:2091702 | 481 | AT3G24530 [Arabidopsis thalian | 0.962 | 0.964 | 0.793 | 2.9e-199 | |
| UNIPROTKB|Q81WX4 | 318 | spoVK "Stage V sporulation pro | 0.400 | 0.606 | 0.386 | 3.2e-33 | |
| TIGR_CMR|BA_3839 | 318 | BA_3839 "stage V sporulation p | 0.400 | 0.606 | 0.386 | 3.2e-33 | |
| UNIPROTKB|O53687 | 631 | eccA3 "ESX-3 secretion system | 0.535 | 0.408 | 0.343 | 2.9e-32 | |
| UNIPROTKB|O69733 | 573 | eccA1 "ESX-1 secretion system | 0.541 | 0.455 | 0.332 | 1.8e-31 | |
| TIGR_CMR|CHY_1391 | 296 | CHY_1391 "stage V sporulation | 0.383 | 0.625 | 0.397 | 1.6e-29 | |
| ASPGD|ASPL0000069352 | 2310 | AN7246 [Emericella nidulans (t | 0.433 | 0.090 | 0.292 | 1.1e-17 | |
| UNIPROTKB|P63744 | 610 | eccA5 "ESX-5 secretion system | 0.458 | 0.362 | 0.276 | 2e-15 | |
| UNIPROTKB|G4NES4 | 703 | MGG_11680 "AAA family ATPase" | 0.454 | 0.311 | 0.293 | 1e-13 | |
| TAIR|locus:2134786 | 243 | AT4G19150 [Arabidopsis thalian | 0.365 | 0.724 | 0.287 | 1.2e-13 |
| TAIR|locus:2091702 AT3G24530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
Identities = 368/464 (79%), Positives = 413/464 (89%)
Query: 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
Q +R RSA+P TIH CA SGDL+A QRLL++NPSLLNERNPVM TPLHVSAG
Sbjct: 4 QNGGGQRLRSARPTTIHDCALSGDLIALQRLLKDNPSLLNERNPVMYHTPLHVSAGNGNV 63
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
+IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL GAFIEAKA+NGMTP
Sbjct: 64 DIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLESGAFIEAKASNGMTP 123
Query: 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181
LHL+VWYSI +++ +TVKTLL++NADCSAKDNEG TPLDHL G GS KLRELL W +E
Sbjct: 124 LHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQGSEKLRELLRWFLQE 183
Query: 182 QRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGAR 241
QRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGMLLDERR+ALGL +G R
Sbjct: 184 QRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTR 243
Query: 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR 301
RPPHMAFLGNPGTGKTMVAR+LG+LL VGILPTD+VTEVQRTDLVGEFVGHTGPKTRR+
Sbjct: 244 RPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRK 303
Query: 302 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVI 361
I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+VVIFAGYSEPMKRVI
Sbjct: 304 IQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGKIVVIFAGYSEPMKRVI 363
Query: 362 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421
ASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+LH SC++ IA+LIE
Sbjct: 364 ASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFRLHESCTLQEIASLIE 423
Query: 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 465
ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI
Sbjct: 424 AETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTI 467
|
|
| UNIPROTKB|Q81WX4 spoVK "Stage V sporulation protein K" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 78/202 (38%), Positives = 124/202 (61%)
Query: 192 SETKAK---MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 248
SET K + +E E+ +VG+ ++K +++ + ++++R+ +GLK ++ HM F
Sbjct: 36 SETTTKHEMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLK-SEKQVLHMLF 94
Query: 249 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 308
GNPGTGKT VAR++G+LL+ + IL + E +R DLVGE++GHT KTR IK+A GG
Sbjct: 95 KGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGG 154
Query: 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 366
ILF+DEAY L + +KD+G EA++ ++ M+ + V+I AGYS M ++ N G
Sbjct: 155 ILFIDEAYSLA---RGGEKDFGKEAIDTLVKHMEDKQHGFVLILAGYSREMNHFLSLNPG 211
Query: 367 FCRRVTKFFHFNDFNSEELAKI 388
R F D++ +L +I
Sbjct: 212 LQSRFPFIIEFADYSVNQLLEI 233
|
|
| TIGR_CMR|BA_3839 BA_3839 "stage V sporulation protein K" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 78/202 (38%), Positives = 124/202 (61%)
Query: 192 SETKAK---MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 248
SET K + +E E+ +VG+ ++K +++ + ++++R+ +GLK ++ HM F
Sbjct: 36 SETTTKHEMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLK-SEKQVLHMLF 94
Query: 249 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 308
GNPGTGKT VAR++G+LL+ + IL + E +R DLVGE++GHT KTR IK+A GG
Sbjct: 95 KGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGG 154
Query: 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 366
ILF+DEAY L + +KD+G EA++ ++ M+ + V+I AGYS M ++ N G
Sbjct: 155 ILFIDEAYSLA---RGGEKDFGKEAIDTLVKHMEDKQHGFVLILAGYSREMNHFLSLNPG 211
Query: 367 FCRRVTKFFHFNDFNSEELAKI 388
R F D++ +L +I
Sbjct: 212 LQSRFPFIIEFADYSVNQLLEI 233
|
|
| UNIPROTKB|O53687 eccA3 "ESX-3 secretion system protein EccA3" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 93/271 (34%), Positives = 147/271 (54%)
Query: 190 ACSETKAKM-DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 248
A E KA + E E +L+ +GL E+K Q+ + + ++ RK GL V A+R H+ F
Sbjct: 325 AAHERKAALLHEAELQLAEFIGLDEVKRQVSRLKSSVAMELVRKQRGLTV-AQRTHHLVF 383
Query: 249 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 308
G PGTGKT +AR++ ++ +G+L + + EV R DL+G+ +G T KT I A G
Sbjct: 384 AGPPGTGKTTIARVVAKIYCGLGLLKRENIREVHRADLIGQHIGETEAKTNAIIDSALDG 443
Query: 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--DGGKVVVIFAGYSEPMKRVIASNEG 366
+LF+DEAY L+ +D +G+ A++ +++ M D ++VVI AGY + + + +NEG
Sbjct: 444 VLFLDEAYALVATGAKND--FGLVAIDTLLARMENDRDRLVVIIAGYRADLDKFLDTNEG 501
Query: 367 FCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA-IAALIEKETT 425
R T+ F + S EL +I H KM Q DS+ LH ++ A +AA +T
Sbjct: 502 LRSRFTRNIDFPSYTSHELVEIAH-KMAEQ-RDSVFEQSALHDLEALFAKLAAESTPDTN 559
Query: 426 EKQRREM----NGGLVDPMLVNARENLDLRL 452
RR + NG V ++ + E + RL
Sbjct: 560 GISRRSLDIAGNGRFVRNIVERSEEEREFRL 590
|
|
| UNIPROTKB|O69733 eccA1 "ESX-1 secretion system protein EccA1" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 1.8e-31, P = 1.8e-31
Identities = 91/274 (33%), Positives = 145/274 (52%)
Query: 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMV 259
E + EL +GL +K Q+ ++ L+ R A G+KV A+ HM F G PGTGKT +
Sbjct: 285 EAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV-AQPSKHMIFTGPPGTGKTTI 343
Query: 260 ARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLI 319
AR++ +L +G++ ++ E R D V E+ G + KT + I +A GG+LF+DEAY L+
Sbjct: 344 ARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGGVLFIDEAYALV 403
Query: 320 PMQKADDKDYGIEALEEIMSVM--DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 377
+ +G EAL+ +++ M D ++VVI AGYS + R++ +NEG R F
Sbjct: 404 QERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDIDRLLETNEGLRSRFATRIEF 463
Query: 378 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG-GL 436
+ ++ EEL +I ++ +DS L + + A L ++ ++ ++ G G
Sbjct: 464 DTYSPEELLEIANVIA--AADDSALTAEAAENF--LQAAKQLEQRMLRGRRALDVAGNGR 519
Query: 437 VDPMLVNARENL-DLRLS----FDCLDTDELRTI 465
LV A E D+RL+ D LD D LR I
Sbjct: 520 YARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553
|
|
| TIGR_CMR|CHY_1391 CHY_1391 "stage V sporulation protein K" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 76/191 (39%), Positives = 111/191 (58%)
Query: 197 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 256
++ L EL +VGL E+K + + + ++R LK HM F GNPGTGK
Sbjct: 24 QVSSLLKELDRMVGLIEVKEMVFEIYALAQIHKKRVQEKLKTN-NVSWHMVFKGNPGTGK 82
Query: 257 TMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAY 316
T VARI+G+L +GIL + EV+R DLVGE++GHT KTR ++K+A GG+LF+DEAY
Sbjct: 83 TTVARIIGKLFKEIGILTKGHLIEVERADLVGEYIGHTALKTREQLKKALGGVLFIDEAY 142
Query: 317 RLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRVTKF 374
L + DKD+G EA++ ++ + + +V+I AGY + M ++ N G R
Sbjct: 143 SLA---RGGDKDFGREAIDVVVKGAEDYRDNLVIILAGYYDEMNYLLEQNPGLKSRFPIE 199
Query: 375 FHFNDFNSEEL 385
F D+ EEL
Sbjct: 200 ITFPDYTDEEL 210
|
|
| ASPGD|ASPL0000069352 AN7246 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 64/219 (29%), Positives = 116/219 (52%)
Query: 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 266
+IVG + +L ++ + + + + L + P + F G PG+GKT AR +G++
Sbjct: 1844 DIVGCESIISKLEEYRQSV---KNMRELDMDPKEHVPFNFLFRGPPGSGKTSTARKMGKV 1900
Query: 267 LYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADD 326
Y +G+L + V E TDL+G+++GHTGPKT+ ++++ G +L +DEAYRL Q A
Sbjct: 1901 YYDMGLLSSAEVIESSATDLIGQYIGHTGPKTQELLEKSLGKVLLIDEAYRLAEGQFA-- 1958
Query: 327 KDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386
K+ E ++ I K+++I AGY + R++ N G R + FN +
Sbjct: 1959 KEAMDEMVDCITKPKFFQKLIIILAGYDNDINRLMTINPGLTSRFPEELEFNGLAPADCL 2018
Query: 387 KILHIKMNNQTEDSL--LYGFKLHSSCSMDAIAALIEKE 423
++L + + D L + F L + +D+ ++L +K+
Sbjct: 2019 QLLTKLLQRRKADFLPKVNSFDLDA---LDSPSSLFQKK 2054
|
|
| UNIPROTKB|P63744 eccA5 "ESX-5 secretion system protein EccA5" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 63/228 (27%), Positives = 108/228 (47%)
Query: 177 WHSEEQRKRRALEAC--SETKAK-MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKA 233
W + R EA +E AK + E + EL+ ++G+ + K +++ ++ R
Sbjct: 282 WDPDSAPTRAQTEAARHAEMAAKYLAEGDAELNAMLGMEQAKKEIKLIKSTTKVNLARAK 341
Query: 234 LGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 293
+GL V H LG PGTGKT VAR + L + +L V E RT L+G ++
Sbjct: 342 MGLPVPVTSR-HTLLLGPPGTGKTSVARAFTKQLCGLTVLRKPLVVETSRTKLLGRYMAD 400
Query: 294 TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFA 351
T ++ A GG +F DE + L + YG + ++ M+ + +VV A
Sbjct: 401 AEKNTEEMLEGALGGAVFFDEMHTLHEKGYSQGDPYGNAIINTLLLYMENHRDELVVFGA 460
Query: 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 399
GY++ M++++ N+G RR + F + +EL + + M + ED
Sbjct: 461 GYAKAMEKMLEVNQGLRRRFSTVIEFFSYTPQELIALTQL-MGRENED 507
|
|
| UNIPROTKB|G4NES4 MGG_11680 "AAA family ATPase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 68/232 (29%), Positives = 111/232 (47%)
Query: 183 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 242
+ R+ E + ++L + GL E+K + + M+ + R+ + L+ G R
Sbjct: 357 KARQEWEHLKRAEGAQSAALDDLMEMTGLEEVK-EAFLTMQNMVDAKMRQNVSLQ-GERW 414
Query: 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR-RR 301
+ LGNPGTGKT VAR+ G+ L VG + R E L +G +G ++
Sbjct: 415 GASL--LGNPGTGKTTVARLYGKFLTSVGAIAGTRFEETTGAKLA--HLGVSGCESLIAD 470
Query: 302 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKR 359
I E+ GG+LFVDEAY+L + + G L+ +++ ++ GK+V + AGY M+
Sbjct: 471 ILESGGGVLFVDEAYQLT----SGNNQGGGAVLDFLLAEIENLVGKIVFVIAGYDSDMEA 526
Query: 360 VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411
A N G R F+D+ EE+ IL K++ + + L SC
Sbjct: 527 FFAHNTGLRSRFPHQLRFSDYTDEEIHYILQHKIDKRYNGKMRCEGGLSGSC 578
|
|
| TAIR|locus:2134786 AT4G19150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 55/191 (28%), Positives = 91/191 (47%)
Query: 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
A +H A+SGDL A Q ++ NP +N R+ ++TPLH++A E+V L + +
Sbjct: 18 ADLHSAARSGDLAAVQSIISSNPLAVNSRDK-HSRTPLHLAAWAGHNEVVSYLCK----N 72
Query: 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED 134
K ++ A +H A++ G E + LL+ G +++ G+TPLH Y+ +
Sbjct: 73 KADVGAAAGDDMGAIHFASQKGHLEVVRTLLSAGGSVKSITRKGLTPLH----YAAQGSH 128
Query: 135 YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSET 194
+ VK L++ A A GK+P D N L E EEQ ++ + +T
Sbjct: 129 FEIVKYLVKKGASVRATTKAGKSPADVAGNAETQNFLEEC-----EEQARKAKVNNEKKT 183
Query: 195 K-AKMDELENE 204
+ K + NE
Sbjct: 184 EIVKPESCSNE 194
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 482 | |||
| TIGR02881 | 261 | TIGR02881, spore_V_K, stage V sporulation protein | 1e-48 | |
| CHL00181 | 287 | CHL00181, cbbX, CbbX; Provisional | 2e-46 | |
| TIGR02880 | 284 | TIGR02880, cbbX_cfxQ, probable Rubsico expression | 7e-46 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 6e-40 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 1e-26 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 7e-20 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 9e-19 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 2e-17 | |
| PHA02874 | 434 | PHA02874, PHA02874, ankyrin repeat protein; Provis | 3e-17 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 1e-15 | |
| PHA03095 | 471 | PHA03095, PHA03095, ankyrin-like protein; Provisio | 2e-13 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 2e-13 | |
| PHA02874 | 434 | PHA02874, PHA02874, ankyrin repeat protein; Provis | 7e-13 | |
| PHA02878 | 477 | PHA02878, PHA02878, ankyrin repeat protein; Provis | 3e-12 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 7e-12 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 6e-11 | |
| COG0666 | 235 | COG0666, Arp, FOG: Ankyrin repeat [General functio | 2e-10 | |
| PHA03100 | 422 | PHA03100, PHA03100, ankyrin repeat protein; Provis | 3e-10 | |
| PHA03095 | 471 | PHA03095, PHA03095, ankyrin-like protein; Provisio | 1e-09 | |
| PHA02874 | 434 | PHA02874, PHA02874, ankyrin repeat protein; Provis | 7e-09 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 8e-09 | |
| PHA02878 | 477 | PHA02878, PHA02878, ankyrin repeat protein; Provis | 1e-08 | |
| PHA02876 | 682 | PHA02876, PHA02876, ankyrin repeat protein; Provis | 1e-08 | |
| PHA03095 | 471 | PHA03095, PHA03095, ankyrin-like protein; Provisio | 2e-08 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 2e-08 | |
| PHA03100 | 422 | PHA03100, PHA03100, ankyrin repeat protein; Provis | 4e-08 | |
| pfam13857 | 56 | pfam13857, Ank_5, Ankyrin repeats (many copies) | 6e-08 | |
| PHA02876 | 682 | PHA02876, PHA02876, ankyrin repeat protein; Provis | 3e-07 | |
| pfam13637 | 54 | pfam13637, Ank_4, Ankyrin repeats (many copies) | 3e-07 | |
| PHA03095 | 471 | PHA03095, PHA03095, ankyrin-like protein; Provisio | 2e-06 | |
| pfam00023 | 33 | pfam00023, Ank, Ankyrin repeat | 3e-06 | |
| PHA02878 | 477 | PHA02878, PHA02878, ankyrin repeat protein; Provis | 5e-06 | |
| PTZ00322 | 664 | PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct | 6e-06 | |
| pfam13637 | 54 | pfam13637, Ank_4, Ankyrin repeats (many copies) | 1e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-05 | |
| PHA02875 | 413 | PHA02875, PHA02875, ankyrin repeat protein; Provis | 6e-05 | |
| PHA03095 | 471 | PHA03095, PHA03095, ankyrin-like protein; Provisio | 8e-05 | |
| PHA02876 | 682 | PHA02876, PHA02876, ankyrin repeat protein; Provis | 8e-05 | |
| pfam13857 | 56 | pfam13857, Ank_5, Ankyrin repeats (many copies) | 9e-05 | |
| pfam13857 | 56 | pfam13857, Ank_5, Ankyrin repeats (many copies) | 9e-05 | |
| PHA02875 | 413 | PHA02875, PHA02875, ankyrin repeat protein; Provis | 1e-04 | |
| PHA02874 | 434 | PHA02874, PHA02874, ankyrin repeat protein; Provis | 2e-04 | |
| pfam13606 | 30 | pfam13606, Ank_3, Ankyrin repeat | 2e-04 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 6e-04 | |
| smart00248 | 30 | smart00248, ANK, ankyrin repeats | 6e-04 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 8e-04 | |
| PHA02878 | 477 | PHA02878, PHA02878, ankyrin repeat protein; Provis | 0.001 | |
| PHA02876 | 682 | PHA02876, PHA02876, ankyrin repeat protein; Provis | 0.001 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 0.001 | |
| TIGR02928 | 365 | TIGR02928, TIGR02928, orc1/cdc6 family replication | 0.001 | |
| pfam00023 | 33 | pfam00023, Ank, Ankyrin repeat | 0.002 | |
| PHA02884 | 300 | PHA02884, PHA02884, ankyrin repeat protein; Provis | 0.002 | |
| PHA02875 | 413 | PHA02875, PHA02875, ankyrin repeat protein; Provis | 0.003 | |
| PHA02884 | 300 | PHA02884, PHA02884, ankyrin repeat protein; Provis | 0.003 | |
| pfam13401 | 124 | pfam13401, AAA_22, AAA domain | 0.003 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 0.004 |
| >gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-48
Identities = 100/276 (36%), Positives = 147/276 (53%), Gaps = 21/276 (7%)
Query: 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVA 260
+E ELS +VGL E+K +++ + ++E+RK GLK ++ HM F GNPGTGKT VA
Sbjct: 1 VERELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVA 59
Query: 261 RILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320
RILG+L + +L + EV+R DLVGE++GHT KTR IK+A GG+LF+DEAY L
Sbjct: 60 RILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSL-- 117
Query: 321 MQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 378
+ +KD+G EA++ ++ M+ + V+I AGYS+ M ++ N G R F
Sbjct: 118 -ARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP 176
Query: 379 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ--RREM-NGG 435
D+ EEL +I +M + E L + +A L E Q RE N
Sbjct: 177 DYTVEELMEIA-ERMVKEREYKL----------TEEAKWKLREHLYKVDQLSSREFSNAR 225
Query: 436 LVDPMLVNARENLDLR-LSFDCLDTDELRTITLEDL 470
V ++ A +R L ++L + EDL
Sbjct: 226 YVRNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group [Cellular processes, Sporulation and germination]. Length = 261 |
| >gnl|CDD|177083 CHL00181, cbbX, CbbX; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-46
Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 10/208 (4%)
Query: 192 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGN 251
++ + +D L+ EL VGL +K ++R+ A +L+D RK LGL + HM+F G+
Sbjct: 12 TQIQEVLDILDEEL---VGLAPVKTRIREIAALLLIDRLRKNLGL-TSSNPGLHMSFTGS 67
Query: 252 PGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILF 311
PGTGKT VA + +LY +G + + V R DLVG+++GHT PKT+ +K+A GG+LF
Sbjct: 68 PGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLF 127
Query: 312 VDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 368
+DEAY L K D ++DYG EA+E ++ VM+ + +VVIFAGY + M + SN G
Sbjct: 128 IDEAYYLY---KPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLS 184
Query: 369 RRVTKFFHFNDFNSEELAKILHIKMNNQ 396
R+ F D+ EEL +I I + Q
Sbjct: 185 SRIANHVDFPDYTPEELLQIAKIMLEEQ 212
|
Length = 287 |
| >gnl|CDD|200217 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 7e-46
Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 19/291 (6%)
Query: 186 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 244
RA S +D+L+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 5 RAEYEGSGITEVLDQLDREL---IGLKPVKTRIREIAALLLVERARQKLGL---ASAAPT 58
Query: 245 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 303
HM+F GNPGTGKT VA + ++L+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 118
Query: 304 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 361
A GG+LF+DEAY L + +++DYG EA+E ++ VM+ + +VVI AGY + M
Sbjct: 119 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYKDRMDSFF 176
Query: 362 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421
SN GF RV F D++ EEL +I + ++ Q Y F + + AL
Sbjct: 177 ESNPGFSSRVAHHIDFPDYSDEELLEIAGLMLDEQQ-----YRFTAEAETAFADYIALRR 231
Query: 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472
+ R + L D + L LD +L TI ED+ A
Sbjct: 232 TQPHFANARSIRNAL-DRARLRQANRLFTASD-GVLDKSDLSTIAPEDILA 280
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. Length = 284 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 6e-40
Identities = 103/322 (31%), Positives = 156/322 (48%), Gaps = 33/322 (10%)
Query: 179 SEEQRKRRALEACSETKAK-MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLK 237
S R A +E KAK + E E EL+ +GL +K Q+ + R GL
Sbjct: 248 SAPSRAEFVDPAAAERKAKLLAEAEAELAEQIGLERVKRQVAALKSSTAMALARAERGLP 307
Query: 238 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK 297
V A+ HM F G PGTGKT +AR++ ++ +G+L V EV R DL+G+++G + K
Sbjct: 308 V-AQTSNHMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAK 366
Query: 298 TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--DGGKVVVIFAGYSE 355
T I A GG+LF+DEAY L+ +G+EA++ +++ M D ++VVI AGY +
Sbjct: 367 TNEIIDSALGGVLFLDEAYTLVETGYGQKDPFGLEAIDTLLARMENDRDRLVVIGAGYRK 426
Query: 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415
+ + + NEG R T+ F ++ +EL +I +M + + L A
Sbjct: 427 DLDKFLEVNEGLRSRFTRVIEFPSYSPDELVEIAR-RMATERDSVL----------DDAA 475
Query: 416 IAALIEKETTEKQ----------RREM----NGGLVDPMLVNARENLDLRL----SFDCL 457
AL+E TT Q RR + NG V ++ A E D RL D +
Sbjct: 476 ADALLEAATTLAQDTTPDANGDLRRGLDIAGNGRFVRNVVERAEEERDFRLDHSDRLDAV 535
Query: 458 DTDELRTITLEDLEAGLKLLLR 479
D+L IT +D+ + LLR
Sbjct: 536 TVDDLMEITADDVARAVASLLR 557
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-26
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 9/128 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE + ++ A++ G TPLH+AAKNG E KLLL G
Sbjct: 8 RTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + A+ +G TPLH + R+ + VK LL++ AD +A+D +G+TPL HL+ G
Sbjct: 64 ADVNARDKDGNTPLH----LAARNGNLDVVKLLLKHGADVNARDKDGRTPL-HLAAKNGH 118
Query: 169 AKLRELLL 176
++ +LLL
Sbjct: 119 LEVVKLLL 126
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-20
Identities = 46/99 (46%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139
A++ G TPLH+AA NG E KLLL +GA + AK N+G TPLHL+ VK
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG----HLEIVK 57
Query: 140 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
LLE AD +A+D +G TPL HL+ G+ + +LLL H
Sbjct: 58 LLLEKGADVNARDKDGNTPL-HLAARNGNLDVVKLLLKH 95
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 9e-19
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 17 IHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
+H A +G L + LL + + + +TPLH++A EIVK LLE +
Sbjct: 11 LHLAASNGHLEVVKLLLENGADVNAKDNDG----RTPLHLAAKNGHLEIVKLLLEKGAD- 65
Query: 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
+ A++ G TPLH+AA+NG + KLLL HGA + A+ +G TPLHL+
Sbjct: 66 ---VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-17
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111
LH++A E+VK LLE G D + +T LH+AA+NG E KLLL HGA +
Sbjct: 1 LHLAAKNGNLELVKLLLE-KGADVNLGDT-----DTALHLAARNGNLEIVKLLLEHGADV 54
Query: 112 EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152
AK +G T LH + R+ + VK LLE+ AD + KD
Sbjct: 55 NAKDKDGNTALH----LAARNGNLEIVKLLLEHGADINLKD 91
|
Length = 91 |
| >gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 3e-17
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 110
P+H++ +N +I+K LLE ++ GE+PLH AA+ G KLL+ HG
Sbjct: 160 PIHIAIKHNFFDIIKLLLE----KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215
Query: 111 IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170
I K NG TPLH ++ ++ RS LL NA + +D +G TPL H N P
Sbjct: 216 IMNKCKNGFTPLHNAIIHN-RS-----AIELLINNASINDQDIDGSTPLHHAINPPCDID 269
Query: 171 LRELLLWHS-----EEQRKRRALEACSETKAKMDELENELSNIVGLHE 213
+ ++LL+H ++ + ++ + K +++ ++N V + E
Sbjct: 270 IIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKE 317
|
Length = 434 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-15
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A++G+L + LL + + T LH++A EIVK LLE
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEH----GA 52
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK 114
++ A++ G T LH+AA+NG E KLLL HGA I K
Sbjct: 53 DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
|
Length = 91 |
| >gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 50 TPLHV---SAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLL 105
TPLH+ + +IV+ LLE G D + A G TPLH+ N KLL+
Sbjct: 49 TPLHLYLHYSSEKVKDIVRLLLE-AGAD---VNAPERCGFTPLHLYLYNATTLDVIKLLI 104
Query: 106 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD-HLSN 164
GA + AK G TPLH V+ S + + ++ LL AD +A D G TPL L +
Sbjct: 105 KAGADVNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162
Query: 165 GPGSAKLRELLL 176
+ +L LL+
Sbjct: 163 RNANVELLRLLI 174
|
Length = 471 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-13
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 248 FLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE- 306
G PGTGKT +A+ + + L E+ ++LV ++VG + + R + A+
Sbjct: 3 LYGPPGTGKTTLAKAVAKELGA-------PFIEISGSELVSKYVGESEKRLRELFEAAKK 55
Query: 307 --GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVI 349
++F+DE L + + + ++++ +DG KV+VI
Sbjct: 56 LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVI 105
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 7e-13
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH + E +K L E+ + V +E N G P+H+A K+ + KLLL G
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGAD--VNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKG 180
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
A+ K NNG +PLH + Y DYA +K L+++ K G TPL
Sbjct: 181 AYANVKDNNGESPLHNAAEYG----DYACIKLLIDHGNHIMNKCKNGFTPL 227
|
Length = 434 |
| >gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 3e-12
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 25 DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84
L N ++ ++ N +PLH + + IV LLE + +A++
Sbjct: 182 RLTELLLSYGANVNIPDKTN----NSPLHHAVKHYNKPIVHILLENGAS----TDARDKC 233
Query: 85 GETPLHMAAKNGCN-EAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLL 142
G TPLH++ + + KLLL HG + AK+ G+T LH S I+SE +K LL
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS----IKSER--KLKLLL 287
Query: 143 EYNADCSAKDNEGKTPL 159
EY AD ++ ++ TPL
Sbjct: 288 EYGADINSLNSYKLTPL 304
|
Length = 477 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-12
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148
LH+AAKNG E KLLL GA + + T LH + R+ + VK LLE+ AD
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALH----LAARNGNLEIVKLLLEHGADV 54
Query: 149 SAKDNEGKTPLDH 161
+AKD +G T L
Sbjct: 55 NAKDKDGNTALHL 67
|
Length = 91 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-11
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A++G L + LL + + N R+ TPLH++A ++VK LL+ +
Sbjct: 44 LHLAAKNGHLEIVKLLLEKGADV-NARDK-DGNTPLHLAARNGNLDVVKLLLKHGAD--- 98
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLL 105
+ A++ G TPLH+AAKNG E KLLL
Sbjct: 99 -VNARDKDGRTPLHLAAKNGHLEVVKLLL 126
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (147), Expect = 2e-10
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 29/184 (15%)
Query: 1 MQKNQDRRSRSAKPATIHGC---AQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAG 57
+ K R +A+ A S +LL + + +N ++ TPLH++A
Sbjct: 57 LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADG-DTPLHLAAL 115
Query: 58 YNK-----AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 112
E+ K LLE G D ++ G TPLH AA NG + +LLL GA
Sbjct: 116 NGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN 174
Query: 113 AKANNGMTPLHLSVWYSIRSEDYATVKTLLEY---------------NADCSAKDNEGKT 157
++ + G+T L + ++ VK LL+ NA+ S ++ T
Sbjct: 175 SRNSYGVTALD----PAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLT 230
Query: 158 PLDH 161
L
Sbjct: 231 SLII 234
|
Length = 235 |
| >gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-----EAAKLL 104
PL+++ ++VK LL ++ ++ + TPLH + N E KLL
Sbjct: 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92
Query: 105 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH--L 162
L +GA + A NNG+TPL ++ S +S Y+ V+ LL+ A+ + K+++G+ L H L
Sbjct: 93 LEYGANVNAPDNNGITPLLYAI--SKKSNSYSIVEYLLDNGANVNIKNSDGENLL-HLYL 149
Query: 163 SNGPGSAKLRELLLWH 178
+ K+ +LL+
Sbjct: 150 ESNKIDLKILKLLIDK 165
|
Length = 422 |
| >gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 50 TPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA--AKLLLA 106
TPLH+ +++K L++ + + A++ G TPLH+ +LLL
Sbjct: 85 TPLHLYLYNATTLDVIKLLIKAGAD----VNAKDKVGRTPLHVYLSGFNINPKVIRLLLR 140
Query: 107 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG- 165
GA + A GMTPL V R+ + ++ L++ AD A D+ ++ L H
Sbjct: 141 KGADVNALDLYGMTPLA--VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF 198
Query: 166 -PGSAKLRELL 175
P + +REL+
Sbjct: 199 KPRARIVRELI 209
|
Length = 471 |
| >gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 7e-09
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
+++K++L+ +++ ++ +T LH A K G E+ K+L +GA + + +NG P
Sbjct: 105 DMIKTILD----CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYP 160
Query: 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179
+H+ +I+ + +K LLE A + KDN G++PL H + G +LL+ H
Sbjct: 161 IHI----AIKHNFFDIIKLLLEKGAYANVKDNNGESPL-HNAAEYGDYACIKLLIDHG 213
|
Length = 434 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 264
L +I GL E K +L K A L +R L K+G R P + G PGTGKT++A+ +
Sbjct: 241 LDDIGGLEEAKEEL-KEAIETPL--KRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297
Query: 265 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM 321
R V+ ++L+ ++VG + R ++A I+F+DE L
Sbjct: 298 LESR-------SRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASG 350
Query: 322 QKADDKDYGIEALEEIMSVMDGGK----VVVI 349
+ + G + ++++ +DG + V+VI
Sbjct: 351 RGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382
|
Length = 494 |
| >gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90
+LL + +N ++ T LH + + + LL + N + + N +PLH
Sbjct: 151 KLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN----SPLH 206
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 150
A K+ +LL +GA +A+ G TPLH+SV Y DY +K LLE+ D +A
Sbjct: 207 HAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK---DYDILKLLLEHGVDVNA 263
Query: 151 KDN-EGKTPLDHLS 163
K G T L H S
Sbjct: 264 KSYILGLTAL-HSS 276
|
Length = 477 |
| >gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-08
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 46 VMAQTPLH-VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-EAAKL 103
TPLH S + + +V LLE ++ A+N+ GETPL++ AKNG + E +
Sbjct: 271 DCKNTPLHHASQAPSLSRLVPKLLE----RGADVNAKNIKGETPLYLMAKNGYDTENIRT 326
Query: 104 LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
L+ GA + A +TPLH + S + V TLLE A+ +A+D KTP+ +
Sbjct: 327 LIMLGADVNAADRLYITPLHQA---STLDRNKDIVITLLELGANVNARDYCDKTPIHY 381
|
Length = 682 |
| >gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 55 SAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK---LLLAHGAFI 111
+A E V+ LL + E YG+TPLH+ + LLL GA +
Sbjct: 21 NASNVTVEEVRRLLAAGADVNFRGE----YGKTPLHLYLHYSSEKVKDIVRLLLEAGADV 76
Query: 112 EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD-HLSNGPGSAK 170
A G TPLHL ++ + + +K L++ AD +AKD G+TPL +LS + K
Sbjct: 77 NAPERCGFTPLHLYLYNATTLD---VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK 133
Query: 171 LRELLL 176
+ LLL
Sbjct: 134 VIRLLL 139
|
Length = 471 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Query: 228 DERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRTD 285
+E +AL + P ++ G PGTGKT +AR + L+ G L + ++
Sbjct: 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV 63
Query: 286 LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGG 344
+ F ++A+ G+LF+DE L + LE + + D
Sbjct: 64 VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALL----RVLETLNDLRIDRE 119
Query: 345 KVVVIFA 351
V VI A
Sbjct: 120 NVRVIGA 126
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 23/178 (12%)
Query: 50 TPLH--VSAGYNKAEIVKSLLEWPGN----DKVEL--------EAQNMYGETPLHMAAKN 95
LH + + +I+K L++ + ++V +++YG TPLH A N
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202
Query: 96 GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--- 152
E K LL GA G TPLH +I + + K LL
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLH----IAILNNNKEIFKLLLNNGPSIKTIIETL 258
Query: 153 --NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNI 208
+ K + + L + R+ +E K ++E E E+ +
Sbjct: 259 LYFKDKDLNTITKIKMLKKSIMYMFLLDPGFYKNRKLIENSKSLKDVINECEKEIERM 316
|
Length = 422 |
| >gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-08
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 67 LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 124
LLE + ++L A + G TPLH+AAK G E + LL G + + ++G+T L L
Sbjct: 1 LLE---HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
|
Length = 56 |
| >gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 3e-07
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 47 MAQTPLHVSAGYNK-AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105
+ TPLH ++ ++ +IV +LLE N + A++ +TP+H AA LL
Sbjct: 340 LYITPLHQASTLDRNKDIVITLLELGAN----VNARDYCDKTPIHYAAVRNNVVIINTLL 395
Query: 106 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165
+GA IEA + T LH ++ + Y +VKTL++ A+ ++K+ + TPL +
Sbjct: 396 DYGADIEALSQKIGTALHFALC---GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKK 452
Query: 166 PGSAKLRELLL 176
+ E+LL
Sbjct: 453 NCKLDVIEMLL 463
|
Length = 682 |
| >gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-07
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142
T LH AA +G E K LL G I +G T LH++ + +K LL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN----GNLEVLKLLL 54
|
Length = 54 |
| >gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 50 TPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
TPLH A + K +V LL + + A+N YG+TPLH AA A + L+A
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLI----AGISINARNRYGQTPLHYAAVFNNPRACRRLIAL 279
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164
GA I A +++G TPL L +R+ + V+ L N L+ S
Sbjct: 280 GADINAVSSDGNTPLSL----MVRNNNGRAVRAALAKNPSAETVAAT----LNTASV 328
|
Length = 471 |
| >gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-06
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN 116
G TPLH+AA+NG E KLLL GA + A+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
|
Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33 |
| >gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120
AEI K LL + + ++ + G T LH A +N +LLL++GA + +
Sbjct: 147 AEITKLLLSYGADINMKDRHK---GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNS 203
Query: 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165
PLH ++++ + V LLE A A+D G TPL H+S G
Sbjct: 204 PLH----HAVKHYNKPIVHILLENGASTDARDKCGNTPL-HISVG 243
|
Length = 477 |
| >gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAA-------KLLLAHGAFIEAKANNGMTPLHLSVWYS 129
L + + HM C AA ++LL GA + +G TPLH++
Sbjct: 67 NLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANG 126
Query: 130 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 189
V+ LLE+ AD + D +GKTPL+ L+ G ++ +LL HS+ + L
Sbjct: 127 ----HVQVVRVLLEFGADPTLLDKDGKTPLE-LAEENGFREVVQLLSRHSQCHFE---LG 178
Query: 190 ACSETKAKMDELEN-----ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP 244
A AK D E S I H + + G L+
Sbjct: 179 AN----AKPDSFTGKPPSLEDSPISSHHPDFSAVPQPMMGSLI----------------- 217
Query: 245 HMAFLGNPGTGKTMVARILGR 265
+ +G PG GKT VAR + R
Sbjct: 218 -VIMVGLPGRGKTYVARQIQR 237
|
Length = 664 |
| >gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-05
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105
T LH +A + E+VK LLE V++ + G T LH+AA+NG E KLLL
Sbjct: 3 TALHKAAISGRLELVKYLLE----KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
|
Length = 54 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 13/121 (10%)
Query: 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG----ILPTDRVTEVQRTDLVGEFVGHTGPK 297
+ +G PG+GKT +AR L R L G + + + E L+ VG
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 298 T---------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 348
++ + +L +DE L+ ++ E ++ + V+
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Query: 349 I 349
+
Sbjct: 121 L 121
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
G TPLH+A + KLL+A GA + + +PLHL+V D ++ L+++
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV----MMGDIKGIELLIDH 157
Query: 145 NADCSAKDNEGKTPL 159
A +D G TPL
Sbjct: 158 KACLDIEDCCGCTPL 172
|
Length = 413 |
| >gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 49 QTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL--L 104
++ LH K A IV+ L+ G D A +M G TPLH A + + + L
Sbjct: 188 RSLLHHHLQSFKPRARIVRELIR-AGCDPA---ATDMLGNTPLHSMATGSSCKRSLVLPL 243
Query: 105 LAHGAFIEAKANNGMTPLHL-SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162
L G I A+ G TPLH +V+ + R+ L+ AD +A ++G TPL +
Sbjct: 244 LIAGISINARNRYGQTPLHYAAVFNNPRACRR-----LIALGADINAVSSDGNTPLSLM 297
|
Length = 471 |
| >gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 8e-05
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH------------ 123
++ A+++Y TP+H AA+ G + LLL++GA + A + ++ L
Sbjct: 169 ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIK 228
Query: 124 -------------LSVWYSIRSEDYATVKTLLEYNADCSAK--DNEGKTPLDHLSNGPGS 168
LS+ +IR+ED T +LL Y+A S D+ TPL H S P
Sbjct: 229 AIIDNRSNINKNDLSLLKAIRNEDLET--SLLLYDAGFSVNSIDDCKNTPLHHASQAPSL 286
Query: 169 AKLRELLL 176
++L LL
Sbjct: 287 SRLVPKLL 294
|
Length = 682 |
| >gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 9e-05
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 104 LLAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
LL HG + A NG TPLHL+ Y V+ LL+ D + +D++G T LD
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYG----ALELVQWLLKPGVDLNLRDSDGLTALD 54
|
Length = 56 |
| >gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 9e-05
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 33 LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92
L E+ + TPLH++A Y E+V+ LL+ + + ++ G T L +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL----RDSDGLTALDLA 56
|
Length = 56 |
| >gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H + GD+ A + LL ++ TPLH++ K +I+K L+
Sbjct: 72 LHDAVEEGDVKAVEELLDLG-KFADDVFYKDGMTPLHLATILKKLDIMKLLIAR----GA 126
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 136
+ + N +PLH+A G + +LL+ H A ++ + G TPL +++ D A
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG----DIA 182
Query: 137 TVKTLLEYNAD 147
K LL+ A+
Sbjct: 183 ICKMLLDSGAN 193
|
Length = 413 |
| >gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 25/176 (14%)
Query: 20 CAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
C SGD+ A +++++ + +N + TPL + A+IV+ + ++
Sbjct: 8 CIYSGDIEAIEKIIKNKGNCIN-ISVDETTTPLIDAIRSGDAKIVELFI----KHGADIN 62
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHG-----------------AFIEA--KANNGMT 120
N PL A K G ++ KLL+ +G ++ N
Sbjct: 63 HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA 122
Query: 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
L + Y+I+ D ++K L EY AD + +D+ G P+ H++ + +LLL
Sbjct: 123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI-HIAIKHNFFDIIKLLL 177
|
Length = 434 |
| >gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 2e-04
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 84 YGETPLHMAAKNGCNEAAKLLLAHGA 109
G TPLH+AA+NG E KLLL HGA
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGA 26
|
Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR-- 300
P ++ F G PGTGKTM+A+ L V +L V+ T+L+GE VG +
Sbjct: 151 PKNVLFYGPPGTGKTMMAKALANEA-KVPLLL------VKATELIGEHVGDGARRIHELY 203
Query: 301 -RIKEAEGGILFVDE 314
R ++A I+F+DE
Sbjct: 204 ERARKAAPCIVFIDE 218
|
Length = 368 |
| >gnl|CDD|197603 smart00248, ANK, ankyrin repeats | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 6e-04
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEA 113
G TPLH+AA+NG E KLLL GA I A
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 266
+I GL E K ++R+ + L + L +G P + G PGTGKT++A+ +
Sbjct: 179 DIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235
Query: 267 L--YMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPM 321
Y + I +++ ++ G + + R KEAE I+F+DE + P
Sbjct: 236 AGAYFISI---------NGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPK 286
Query: 322 QKADDKDYGIEALEEIMSVMDG----GKVVVIFA 351
++ + + +++++MDG G+V+VI A
Sbjct: 287 REEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 31 RLLRENPSLLNERNPVMAQTPLHVSAGYNKA-EIVKSLLEWPGNDKVELEAQN-MYGETP 88
+L EN + + R+ TPLH+S GY K +I+K LLE V++ A++ + G T
Sbjct: 218 HILLENGASTDARD-KCGNTPLHISVGYCKDYDILKLLLE----HGVDVNAKSYILGLTA 272
Query: 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126
LH + K+ KLLL +GA I + + +TPL +V
Sbjct: 273 LHSSIKS--ERKLKLLLEYGADINSLNSYKLTPLSSAV 308
|
Length = 477 |
| >gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 50 TPLHVS-AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-EAAKLLLAH 107
T LH + G N VK+L++ N + ++N TPLH A K C + ++LL +
Sbjct: 410 TALHFALCGTNPYMSVKTLIDRGAN----VNSKNKDLSTPLHYACKKNCKLDVIEMLLDN 465
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147
GA + A PL +++ Y + V LL Y A+
Sbjct: 466 GADVNAINIQNQYPLLIALEY------HGIVNILLHYGAE 499
|
Length = 682 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 265
S+I GL E+K +LR+ + L + + K+G R P + G PGTGKT++A+
Sbjct: 453 SDIGGLEEVKQELREAVEWPL---KHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAK---- 505
Query: 266 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLIPMQ 322
V V+ +++ ++VG + R R+ ++A I+F DE + P +
Sbjct: 506 ---AVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPAR 562
Query: 323 KAD-DKDYGIEALEEIMSVMDG----GKVVVIFA 351
A D + ++++ MDG VVVI A
Sbjct: 563 GARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 62/280 (22%), Positives = 98/280 (35%), Gaps = 70/280 (25%)
Query: 227 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT------E 280
++E KAL + RP ++ G GTGKT V + + + L RV +
Sbjct: 24 IEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83
Query: 281 VQRT------DLV------GEFVGHTGPKTRR-------RIKEAEGGILFV-DEAYRLIP 320
+ T +L GE V TG T + E ++ V DE L+
Sbjct: 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV- 142
Query: 321 MQKADDKDYGIEALEEIMSVMDGGKVVVIF----AGYSEPM-KRVIASNEGFCRRVTKFF 375
DD Y + +D KV VI + E + RV +S C
Sbjct: 143 -GDDDDLLYQLSRARS-NGDLDNAKVGVIGISNDLKFRENLDPRVKSS---LCEEE---I 194
Query: 376 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI---AALIEKETTEKQRREM 432
F +++EEL IL E+ F I AAL +E
Sbjct: 195 IFPPYDAEELRDIL--------ENRAEKAFY-DGVLDDGVIPLCAALAAQEHG------- 238
Query: 433 NGGLVDPMLVNARENLDL-RLSFDCLDTDELRTITLEDLE 471
+AR+ +DL R++ + + + +T + +E
Sbjct: 239 ----------DARKAIDLLRVAGEIAEREGAERVTEDHVE 268
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other [DNA metabolism, DNA replication, recombination, and repair]. Length = 365 |
| >gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 117 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153
+G TPLHL+ R+ VK LLE AD +A+D
Sbjct: 1 DGNTPLHLAA----RNGHLEVVKLLLEAGADVNARDK 33
|
Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33 |
| >gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 40 LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
+ ++N + L+ S ++ +I+ ++L+ + + PL A ++
Sbjct: 25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDD 84
Query: 100 AAKLLLAHGAFIEAKANNG-MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 158
AAKLL+ +GA + A +TPL++SV + ++ LL Y AD + + N+ TP
Sbjct: 85 AAKLLIRYGADVNRYAEEAKITPLYISVLHG----CLKCLEILLSYGADINIQTNDMVTP 140
Query: 159 LD 160
++
Sbjct: 141 IE 142
|
Length = 300 |
| >gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 39/128 (30%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKA----------------------------- 115
G +P+ +A K +EA KLL+ HGA + K
Sbjct: 35 GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94
Query: 116 -----NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170
+GMTPLHL+ + +K L+ AD + + +PL HL+ G K
Sbjct: 95 DDVFYKDGMTPLHLAT----ILKKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIK 149
Query: 171 LRELLLWH 178
ELL+ H
Sbjct: 150 GIELLIDH 157
|
Length = 413 |
| >gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 36 NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE----TPLHM 91
+P + PL + + + K L+ + + N Y E TPL++
Sbjct: 58 DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-------VNRYAEEAKITPLYI 110
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 125
+ +GC + ++LL++GA I + N+ +TP+ L+
Sbjct: 111 SVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144
|
Length = 300 |
| >gnl|CDD|222104 pfam13401, AAA_22, AAA domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 27/128 (21%)
Query: 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------PTDRVTEVQRTDLVGEF 290
R G G+GKT + R L R L ++ P D + ++ R L
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPKDLLRKILR-ALGLPL 59
Query: 291 VGHTGPKTRRRI----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 345
G T + I K +L +DEA L +EALEE+ + D +
Sbjct: 60 SGGTTAELLEAILDALKRRGRPLLIIDEAQHL-----------SLEALEELRDLYDLSEK 108
Query: 346 -VVVIFAG 352
+ VI G
Sbjct: 109 GIQVILVG 116
|
Length = 124 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 245 HMAFLGNPGTGKTMVARILGRLLYMV--------GILPTD---RVTEVQRTDLVGEFVGH 293
H+ G PG GKT++AR L R L + +LP+D GEF
Sbjct: 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFV 104
Query: 294 TGPKTRRRIKEAEGGILFVDE 314
GP A IL +DE
Sbjct: 105 PGPLFA-----AVRVILLLDE 120
|
Length = 329 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 100.0 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 99.98 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 99.97 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 99.97 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.97 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 99.97 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 99.97 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.97 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.97 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.97 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.97 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 99.97 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.97 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.96 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.96 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.96 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.95 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.95 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.95 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 99.95 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.95 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.95 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.95 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.94 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.94 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.94 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.94 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.94 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.94 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.94 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.94 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.93 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.93 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.93 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.93 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.93 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.93 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.93 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.93 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.93 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.92 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.92 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.92 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.92 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.92 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.92 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.91 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.91 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 99.9 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.9 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.9 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.9 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.9 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.9 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.9 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.9 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.9 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.9 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.9 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.9 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.9 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.9 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.89 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.89 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.89 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.89 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.89 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.88 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.87 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 99.87 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.87 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.86 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.86 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.86 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.86 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.86 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.86 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.86 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.85 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.85 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.84 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.84 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.83 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.83 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.83 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.83 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.83 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.83 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.83 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.82 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.82 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.82 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.82 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.82 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.82 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.81 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.81 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.81 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.81 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.81 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.81 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.8 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.8 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.8 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.8 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.79 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.78 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.78 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.78 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.77 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.77 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.77 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.77 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.77 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.76 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.76 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.76 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.76 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.76 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.76 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.76 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.75 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.75 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.75 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.75 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.75 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.74 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.74 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.74 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.74 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.73 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.73 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.73 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.73 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.73 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.73 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.72 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.72 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.72 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.72 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.72 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.71 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.71 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.71 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.71 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.71 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.7 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.7 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.7 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.7 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.7 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.7 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.7 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.69 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.69 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.69 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.69 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.68 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.68 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.68 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.68 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.68 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.67 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.67 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.67 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.66 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.66 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.66 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.66 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.66 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.65 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.65 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 99.65 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.65 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.65 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.65 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.64 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.64 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.64 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.64 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.64 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.63 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.62 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.62 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.62 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 99.62 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.62 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.62 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.61 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.61 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.61 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.61 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.6 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.6 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.58 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.58 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.58 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.58 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.58 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.57 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 99.57 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.57 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.57 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.56 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.56 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.56 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.56 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.56 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.55 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.55 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.55 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.55 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.54 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 99.54 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.53 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.53 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.53 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.52 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.5 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.5 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.49 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.49 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.49 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.48 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.48 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.48 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.48 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 99.48 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.47 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.47 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.47 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.46 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.46 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.45 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 99.45 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 99.44 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.44 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.44 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.44 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 99.43 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.43 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.43 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.43 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.42 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.42 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.41 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.41 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.4 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.39 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.39 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.38 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.38 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 99.38 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.35 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.34 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 99.34 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.33 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.33 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.33 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.32 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.32 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 99.31 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.31 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 99.3 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 99.3 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 99.3 | |
| PHA02244 | 383 | ATPase-like protein | 99.28 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 99.28 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.27 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.26 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.26 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.26 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.25 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.24 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.22 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.21 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.21 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 99.21 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 99.2 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.19 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.19 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.18 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.18 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 99.17 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 99.15 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 99.13 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.13 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 99.1 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 99.07 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 99.04 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 99.02 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 99.02 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.0 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.99 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.98 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.96 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.96 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 98.96 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.94 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.89 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 98.89 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.88 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.88 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 98.86 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.85 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.82 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.8 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.8 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.8 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.75 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.75 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.73 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.71 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.7 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.69 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.69 | |
| PRK08181 | 269 | transposase; Validated | 98.69 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 98.68 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.65 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.65 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.64 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.64 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.63 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.62 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.62 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.58 | |
| PRK06526 | 254 | transposase; Provisional | 98.58 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 98.55 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.53 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.52 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.52 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 98.46 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 98.46 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.45 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 98.45 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.45 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.44 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 98.42 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.41 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.4 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 98.38 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 98.38 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.37 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 98.35 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.34 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 98.34 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.29 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.28 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 98.25 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 98.25 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 98.22 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 98.22 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.21 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 98.19 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 98.19 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.19 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.19 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 98.18 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.18 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 98.17 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 98.16 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 98.05 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 98.02 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 98.01 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 98.0 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.0 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 97.97 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.94 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.89 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.86 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.86 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.84 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 97.83 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 97.83 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 97.82 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.82 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.82 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 97.79 | |
| PHA02774 | 613 | E1; Provisional | 97.78 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.77 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.77 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.77 | |
| PHA02624 | 647 | large T antigen; Provisional | 97.76 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 97.75 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 97.74 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 97.74 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.74 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 97.72 | |
| COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttransla | 97.72 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.72 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.68 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 97.67 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.67 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.66 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 97.62 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.61 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.6 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 97.58 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.58 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.55 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 97.55 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.52 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.52 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 97.49 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.49 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 97.49 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 97.47 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.47 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 97.45 | |
| PLN02200 | 234 | adenylate kinase family protein | 97.44 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.43 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.41 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 97.41 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.4 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 97.4 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.39 | |
| PLN02674 | 244 | adenylate kinase | 97.39 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 97.37 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 97.35 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.34 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 97.33 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.32 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.29 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.27 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.26 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 97.26 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.26 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.25 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.23 | |
| PLN02459 | 261 | probable adenylate kinase | 97.23 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.22 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 97.22 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 97.21 | |
| PLN02840 | 421 | tRNA dimethylallyltransferase | 97.21 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.2 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 97.2 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 97.19 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.19 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.18 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.16 | |
| PRK14529 | 223 | adenylate kinase; Provisional | 97.16 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 97.16 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.15 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.15 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.15 | |
| PRK13764 | 602 | ATPase; Provisional | 97.14 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.13 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 97.13 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 97.13 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 97.12 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 97.12 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 97.11 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 97.1 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 97.1 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.1 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.09 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.09 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 97.09 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.08 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.06 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.06 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.05 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.05 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.05 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.04 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.03 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.02 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 97.02 | |
| smart00072 | 184 | GuKc Guanylate kinase homologues. Active enzymes c | 97.01 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.01 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 97.0 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 97.0 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.99 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 96.99 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 96.99 | |
| TIGR00174 | 287 | miaA tRNA isopentenyltransferase (miaA). Catalyzes | 96.97 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 96.96 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 96.96 | |
| cd02022 | 179 | DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2 | 96.96 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 96.95 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 96.95 |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=315.04 Aligned_cols=236 Identities=22% Similarity=0.323 Sum_probs=207.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+++++|++.+++.|++. +..|..+++++..++..+|++||||||||||||++|||+|+.... .|+.+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~---VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIrv 216 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREV---VELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIRV 216 (406)
T ss_pred CCChhhccCHHHHHHHHHHH---hcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEEe
Confidence 46788999999999888876 888999999999999999999999999999999999999998876 99999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCCh---hHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~---~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.+|+++.+|+|++.+.++++|+.|+ +|||||||||++..+|.++++. ..++.+-+||.+||+ +++-||+|
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 9999999999999999999999885 4999999999999998755433 445667777777886 78999999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.-.+. ||||+| |||+.|+||.||.+.|.+||+.|.+++ .+..+++.+.|+.++.
T Consensus 297 TNR~D~L-----DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---------~l~~dvd~e~la~~~~-------- 354 (406)
T COG1222 297 TNRPDIL-----DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---------NLADDVDLELLARLTE-------- 354 (406)
T ss_pred cCCcccc-----ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---------cCccCcCHHHHHHhcC--------
Confidence 7766554 999988 999999999999999999999999876 4678899998888887
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|+++++++.+|-..+. ++....+|++||.+|..++..
T Consensus 355 -g~sGAdlkaictEAGm~Ai---------R~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 355 -GFSGADLKAICTEAGMFAI---------RERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred -CCchHHHHHHHHHHhHHHH---------HhccCeecHHHHHHHHHHHHh
Confidence 4568999999999988762 345578999999999999865
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=319.22 Aligned_cols=241 Identities=22% Similarity=0.262 Sum_probs=214.3
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
.....|++|+|++++|+.+.+. +.++..+++.+..++..+|++||||||||||||++||++|++... +|+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~---V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-------nFl 497 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQA---VEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-------NFL 497 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHH---HhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------Cee
Confidence 3446799999999999999987 778889999999999999999999999999999999999999988 999
Q ss_pred EeecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+.+.++.++|+|++++.++++|++|+. +||||||||++..+|+++++....+++++||++||+ +.|+||+||
T Consensus 498 svkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 498 SVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred eccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 9999999999999999999999998754 999999999999999877778899999999999997 578899987
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+..... ||++.| |||+.|++|.||.+.|.+||+.++++++ +.++++.+.|++.+++++
T Consensus 578 NRpd~I-----D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp---------~~~~vdl~~La~~T~g~S------ 637 (693)
T KOG0730|consen 578 NRPDMI-----DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP---------FSEDVDLEELAQATEGYS------ 637 (693)
T ss_pred CChhhc-----CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC---------CCccccHHHHHHHhccCC------
Confidence 665554 899988 9999999999999999999999999774 567788888888888655
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
|++|.+++++|...+..+.. +...|+.+||++|++.++|.
T Consensus 638 ---GAel~~lCq~A~~~a~~e~i-------~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 638 ---GAEIVAVCQEAALLALRESI-------EATEITWQHFEEALKAVRPS 677 (693)
T ss_pred ---hHHHHHHHHHHHHHHHHHhc-------ccccccHHHHHHHHHhhccc
Confidence 89999999999988755432 25689999999999998874
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=288.86 Aligned_cols=246 Identities=22% Similarity=0.267 Sum_probs=210.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|++|.|++++|+.|++. +..|...++++..+. .+.++||++||||||||+|||++|.+++. .||.++
T Consensus 209 ikW~DIagl~~AK~lL~EA---VvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNVS 277 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEA---VVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNVS 277 (491)
T ss_pred cChHhhcchHHHHHHHHHH---HhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEec
Confidence 5799999999999999986 677777777776654 48899999999999999999999999986 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC-CChhHHHHHHHHHhhhcC-------CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG-------GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~-~~~~~~~~~~~ll~~l~~-------~~~~vi~~ 351 (482)
.+.+.++|-|++++.++=+|+.|+ +++|||||||+|..+|++. +|+..+++-++||.+||+ .++|+|+|
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999999999999885 4999999999999998855 588899999999999997 36788888
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.|+-+++ .|.+|++||..+|.+|.|+.++|..+++..|... ...+.+..+.|++.+++|+
T Consensus 358 ATN~PWd----iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~---------~~~~~~~~~~lae~~eGyS------- 417 (491)
T KOG0738|consen 358 ATNFPWD----IDEALRRRLEKRIYIPLPDAEARSALIKILLRSV---------ELDDPVNLEDLAERSEGYS------- 417 (491)
T ss_pred ccCCCcc----hHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc---------cCCCCccHHHHHHHhcCCC-------
Confidence 8877775 4899999999999999999999999999999865 4567888888888888665
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC-------CChhh-hhcccHHHHHHHHHHHHhcC
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC-------LDTDE-LRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~-------~~~~~-~~~i~~~d~~~al~~~~~~~ 481 (482)
|.+|.+++..|......|..... ...++ -.+++.+||++|+++++|++
T Consensus 418 --GaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 418 --GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 78889999999888877643211 11222 24799999999999999985
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=302.31 Aligned_cols=251 Identities=22% Similarity=0.303 Sum_probs=212.2
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 201 ~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
....|++|+++++++.++... +.+|.++++.+..++...|.++|||||||||||.+|||+|++.+. +|+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~a---I~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~-------NFis 575 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMA---ILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA-------NFIS 575 (802)
T ss_pred CCCChhhcccHHHHHHHHHHH---HhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC-------ceEe
Confidence 346799999999999999976 778889999999999999999999999999999999999999988 9999
Q ss_pred eecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+.+.+|..+|||+++..++++|..|+. |||||||+|.|.++|+.+..+.+.+++|+||+.||+ ..|+||+||+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATN 655 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATN 655 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecC
Confidence 999999999999999999999998864 999999999999999988888999999999999997 4588888877
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..++. ||+++| |||..++++.|+.+||..||+...+.. +-.+..+++.+.|+....-. .
T Consensus 656 RPDiI-----DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~-------k~pl~~dVdl~eia~~~~c~-------g 716 (802)
T KOG0733|consen 656 RPDII-----DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT-------KPPLSSDVDLDEIARNTKCE-------G 716 (802)
T ss_pred CCccc-----chhhcCCCccCceeeecCCCHHHHHHHHHHHhccC-------CCCCCcccCHHHHhhccccc-------C
Confidence 66664 899988 999999999999999999999998863 23677888988888877611 3
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC-CChh------hhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC-LDTD------ELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~-~~~~------~~~~i~~~d~~~al~~~~~~ 480 (482)
+.|++|-.+|.+|...+..+...+. ...+ ....+|..||.+|+++++|.
T Consensus 717 ftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 717 FTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 4477777888877766654432211 0111 12357899999999999985
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=273.24 Aligned_cols=264 Identities=37% Similarity=0.603 Sum_probs=218.6
Q ss_pred hhHHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 196 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 196 ~~~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
..++.+...++ +++|++.+|++|+++...+.++..+...+.... .++.+++|+||||||||++|+++|+.+...+...
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 45566777776 799999999999999888888877777776542 3566799999999999999999999998888888
Q ss_pred CCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec
Q 011578 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 352 (482)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~ 352 (482)
.++++.++.+++.+.|+|+++.+++++|+++.++||||||+|.+.+++. +++++.++++.|++.|+. +.++||+++
T Consensus 91 ~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~~~~~vI~ag 168 (287)
T CHL00181 91 KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQRDDLVVIFAG 168 (287)
T ss_pred CCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 8899999999999999999998899999999999999999999976432 345678899999999976 568999999
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH-hhccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 431 (482)
+++.++.++..+|+|++||+..|.|++|+.+++.+|++.++++.. +.+ +++++..+....... ....+
T Consensus 169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~-------~~l----~~~~~~~L~~~i~~~~~~~~~ 237 (287)
T CHL00181 169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ-------YQL----TPEAEKALLDYIKKRMEQPLF 237 (287)
T ss_pred CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc-------CCC----ChhHHHHHHHHHHHhCCCCCC
Confidence 998888888889999999999999999999999999999998753 233 344444444432211 12347
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 473 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a 473 (482)
+|+|.++++++++...++.|+... ..+.+++..|+.+|+.+.
T Consensus 238 GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 238 ANARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKS 282 (287)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHH
Confidence 999999999999999999999653 455788999999999753
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=289.99 Aligned_cols=217 Identities=20% Similarity=0.265 Sum_probs=191.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|.+++|.+....++.+.+..+ .+++.+..++..+|.++||+||||||||+||++||++++. ||+.++
T Consensus 187 v~f~diGG~d~~~~el~~li~~i----~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~is 255 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHI----KHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSIS 255 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHh----cCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeec
Confidence 37899999999999999876554 5556666677789999999999999999999999999988 999999
Q ss_pred cccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--------CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--------GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--------~~~~vi~~ 351 (482)
+.++++.+.|+++++++++|++|.. ||+||||||.+.++|...+.+..++++.+|++.||+ ..|+||+|
T Consensus 256 ApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 256 APEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred chhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 9999999999999999999999864 999999999999999988889999999999999986 34788888
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..+.. +|+|+| |||..|.+..|+..+|.+||+.+++. +++...++...|++++.++.
T Consensus 336 TnRPDsl-----DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~---------lrl~g~~d~~qlA~lTPGfV----- 396 (802)
T KOG0733|consen 336 TNRPDSL-----DPALRRAGRFDREICLGVPSETAREEILRIICRG---------LRLSGDFDFKQLAKLTPGFV----- 396 (802)
T ss_pred CCCCccc-----CHHHhccccccceeeecCCchHHHHHHHHHHHhh---------CCCCCCcCHHHHHhcCCCcc-----
Confidence 7655443 899988 99999999999999999999999874 46778899999999998765
Q ss_pred cccCcchhHHHHHHHHHHhhhhhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLS 453 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~ 453 (482)
|++|.+++.+|..-+.+|+.
T Consensus 397 ----GADL~AL~~~Aa~vAikR~l 416 (802)
T KOG0733|consen 397 ----GADLMALCREAAFVAIKRIL 416 (802)
T ss_pred ----chhHHHHHHHHHHHHHHHHh
Confidence 77888888888888887764
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=272.58 Aligned_cols=264 Identities=36% Similarity=0.580 Sum_probs=221.1
Q ss_pred hhHHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 196 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 196 ~~~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
..+++....++ +++|++.+|+++.++...+.++..+...+.... .+..+++|+||||||||++|+++|+.+...+...
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 34555666666 699999999999999988888888887777643 3556899999999999999999999999888888
Q ss_pred CCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec
Q 011578 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 352 (482)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~ 352 (482)
.++|+.++++++.+.|+|+++.+++++|+++.++||||||++.+.+.++ +.+...++++.|++.|+. +.++||+++
T Consensus 90 ~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~~~~~vI~a~ 167 (284)
T TIGR02880 90 KGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQRDDLVVILAG 167 (284)
T ss_pred cceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 8899999999999999999999999999999999999999999975432 345667888999999986 578999999
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh-Hhhccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 431 (482)
+++.++.+...+|+|.+||+..|+||+|+.+++..|++.++++.. ..++.+++..+..+... .....+
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~-----------~~l~~~a~~~L~~~l~~~~~~~~~ 236 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ-----------YRFSAEAEEAFADYIALRRTQPHF 236 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc-----------cccCHHHHHHHHHHHHHhCCCCCC
Confidence 998888888889999999999999999999999999999998753 24556667666654211 111238
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 473 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a 473 (482)
||+|.++|+++++...++.|+..+ ..+.+++..|+.+|+.++
T Consensus 237 GN~R~lrn~ve~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 237 ANARSIRNAIDRARLRQANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 999999999999999999999753 456788999999999765
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=248.63 Aligned_cols=171 Identities=28% Similarity=0.395 Sum_probs=157.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
+.+.+|.|||||||..|+.++|..||......+|..|+. ||||||+||..|+.++|+.|+.. .++++|..++.|+|
T Consensus 33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDda-GWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T 108 (226)
T KOG4412|consen 33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDA-GWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQT 108 (226)
T ss_pred cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCcccc-CCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcc
Confidence 445589999999999999999999998778888888887 99999999999999999999995 59999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||||+..|..+++++|+++|+.++.+|+.|.||||.|+ ..|..+++++|+..|+.+|.+|+.|+|||||+-+. +
T Consensus 109 ~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA----avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e-~ 183 (226)
T KOG4412|consen 109 CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA----AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAE-G 183 (226)
T ss_pred eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH----hccchhhHHHHHhcCCCCCcccccCccHHHHHHhc-c
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999888554 4
Q ss_pred ChHHHHHHHhhhHHHHHHhh
Q 011578 168 SAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~~ 187 (482)
+.++..+|.++|++......
T Consensus 184 ~~d~a~lLV~~gAd~~~edk 203 (226)
T KOG4412|consen 184 HPDVAVLLVRAGADTDREDK 203 (226)
T ss_pred CchHHHHHHHhccceeeccc
Confidence 78888899999988665543
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=264.96 Aligned_cols=253 Identities=37% Similarity=0.564 Sum_probs=212.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+|++++++..++.....+...+.... ....+++|+||||||||++|+++|+.+...+....+.+++++
T Consensus 3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~ 81 (261)
T TIGR02881 3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence 5678899999999999999988888777777777544 345789999999999999999999999877777778899999
Q ss_pred cccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHH
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~ 360 (482)
++++.++|+|+++..++++|+.+.++||||||+|.|.+. .+..+..++++.|++.|+. +.+++|+++++..+..+
T Consensus 82 ~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 82 RADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred HHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccC---CccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence 999999999999999999999999999999999999742 2345667889999999986 56788888888777777
Q ss_pred HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH---hhccccCcchh
Q 011578 361 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQRREMNGGLV 437 (482)
Q Consensus 361 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~l 437 (482)
...+|++++||+..|+||+|+.+++.+|++.++.+.. ..++++++..+....... .....+|+|.+
T Consensus 159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~-----------~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~ 227 (261)
T TIGR02881 159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE-----------YKLTEEAKWKLREHLYKVDQLSSREFSNARYV 227 (261)
T ss_pred HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC-----------CccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 7779999999999999999999999999999987532 245667776665543322 24457999999
Q ss_pred HHHHHHHHHHhhhhhcC-CCCChhhhhcccHHHH
Q 011578 438 DPMLVNARENLDLRLSF-DCLDTDELRTITLEDL 470 (482)
Q Consensus 438 ~~~~~~a~~~~~~r~~~-~~~~~~~~~~i~~~d~ 470 (482)
+|+++.|.++++.|+.. +..+.++...|+.+||
T Consensus 228 ~n~~e~a~~~~~~r~~~~~~~~~~~~~~l~~~d~ 261 (261)
T TIGR02881 228 RNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261 (261)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHhccChhhC
Confidence 99999999999999764 5667788889999886
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=288.89 Aligned_cols=245 Identities=22% Similarity=0.283 Sum_probs=205.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+|++|.+++|..|.+- +..|..+++++. .+..+..++|||||||||||.+|||+|-++.. .|+.+.
T Consensus 669 V~WdDVGGLeevK~eIldT---IqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVK 737 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDT---IQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVK 737 (953)
T ss_pred cchhcccCHHHHHHHHHHH---hcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeec
Confidence 5799999999999999987 667777777765 34456789999999999999999999999987 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCC--CCChhHHHHHHHHHhhhcC------CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA--DDKDYGIEALEEIMSVMDG------GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~--~~~~~~~~~~~~ll~~l~~------~~~~vi~~ 351 (482)
+.++...|+|+++.++|++|++|+ +||||+||+|+++|+|+. +++....+++++||..||+ ..++||+|
T Consensus 738 GPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 738 GPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred CHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 999999999999999999998775 599999999999999874 4566788999999999997 46899999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCC-HHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|++.+.. ||+|++ |||.-+++++++ .+.+..+|+...++ |+++++++...+++.+.-
T Consensus 818 TNRPDLL-----DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk---------FkLdedVdL~eiAk~cp~------ 877 (953)
T KOG0736|consen 818 TNRPDLL-----DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK---------FKLDEDVDLVEIAKKCPP------ 877 (953)
T ss_pred CCCcccc-----ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH---------ccCCCCcCHHHHHhhCCc------
Confidence 7766654 999988 999999997776 57778899887664 578899998888877763
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcC----CC----CChhhhhcccHHHHHHHHHHHHhc
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSF----DC----LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~----~~----~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|+++-.++..|+..+..|... +. ....+...|+++||..|+++++|.
T Consensus 878 --~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 878 --NMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 356899999999999999888532 21 112335589999999999999885
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=253.54 Aligned_cols=233 Identities=23% Similarity=0.306 Sum_probs=186.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.-.+++++|+++.|+.-+-+.+++..|.+.. ...|.++|||||||||||++||++|++... |++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg-------~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~v 182 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFG-------DWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLV 182 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhc-------ccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEe
Confidence 3568999999999998888878888777654 346899999999999999999999998877 99999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC-ChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~-~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
.+..++++++|+....++++++.|+ +||+||||+|.++-.|...+ .....+++|+||+.||+ .-++.|++|+
T Consensus 183 kat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 183 KATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 9999999999999999999998764 59999999999988765333 34456889999999997 3366666655
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
+..+. ||++++||.+.|+|..|+.+||.+|++.++++.+ +..+.....+++.+.+.+
T Consensus 263 ~p~~L-----D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P---------lpv~~~~~~~~~~t~g~S--------- 319 (368)
T COG1223 263 RPELL-----DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP---------LPVDADLRYLAAKTKGMS--------- 319 (368)
T ss_pred Chhhc-----CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC---------CccccCHHHHHHHhCCCC---------
Confidence 54443 9999999999999999999999999999999764 455667777887777654
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 434 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
||+|+.-+-.+....+. .++...|+.+||+.|+++.++
T Consensus 320 gRdikekvlK~aLh~Ai--------~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 320 GRDIKEKVLKTALHRAI--------AEDREKVEREDIEKALKKERK 357 (368)
T ss_pred chhHHHHHHHHHHHHHH--------HhchhhhhHHHHHHHHHhhcc
Confidence 67765543333222211 145568999999999998554
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=245.75 Aligned_cols=236 Identities=19% Similarity=0.282 Sum_probs=198.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.-.+.+++|++-.|+.+++. +..|..+.++...++..+|.++|+|||||||||++|+++|+.... .|+.+
T Consensus 151 dvsy~diggld~qkqeirea---velplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a-------~firv 220 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREA---VELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRV 220 (408)
T ss_pred CccccccccchhhHHHHHHH---HhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------heeee
Confidence 45677899999999999987 777888888888999999999999999999999999999997665 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.+++++.+|.|+....++++|+.|+ ++||||||+|.++.+|...+ +....+++-+||.+||+ ..+-||+|
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 9999999999999999999998875 49999999999999886443 44566888899999987 56899999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..... +|+|++ |+|+.|+||.||..+++-++..+..++. +.++++.+.+...-.
T Consensus 301 tnradtl-----dpallrpgrldrkiefplpdrrqkrlvf~titskm~---------ls~~vdle~~v~rpd-------- 358 (408)
T KOG0727|consen 301 TNRADTL-----DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN---------LSDEVDLEDLVARPD-------- 358 (408)
T ss_pred cCccccc-----CHhhcCCccccccccCCCCchhhhhhhHHhhhhccc---------CCcccCHHHHhcCcc--------
Confidence 7766654 899987 9999999999999999999999888763 556666655443333
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
...++++..++++|-..+ -++....+...||++|++...+
T Consensus 359 -kis~adi~aicqeagm~a---------vr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 359 -KISGADINAICQEAGMLA---------VRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred -ccchhhHHHHHHHHhHHH---------HHhcceeeeHHHHHHHHHhhcC
Confidence 346889999999998775 2245568999999999987653
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=267.24 Aligned_cols=232 Identities=20% Similarity=0.289 Sum_probs=191.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|+++.|+++.|+.+.+++..++.|.+...+| ..-|++|||.||||||||+|||++|.+.+. ||+..+
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLG----GKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------PFF~~s 369 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLG----GKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------PFFYAS 369 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhcc----CcCCCceEEeCCCCCchhHHHHHhhcccCC-------CeEecc
Confidence 459999999999999999999998887766554 456789999999999999999999999887 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++-.-|||...++++++|..|+ +|||||||+|.+..+|...+..+.+..+|+||..||+ .-++||+||+-.
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 999999999999999999999875 4999999999999998866666999999999999998 236777775433
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.. + |++|.| |||..|.+|.||...|.+||+.|+.+.. +..++|+..|++=+. +.+
T Consensus 450 e~--L---D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~---------~~~~VD~~iiARGT~---------GFs 506 (752)
T KOG0734|consen 450 EA--L---DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP---------LDEDVDPKIIARGTP---------GFS 506 (752)
T ss_pred hh--h---hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC---------cccCCCHhHhccCCC---------CCc
Confidence 32 2 777776 9999999999999999999999999764 556777766654444 456
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 434 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
|++|.|+|.+|...++. +....+|+.|++-|-++|
T Consensus 507 GAdLaNlVNqAAlkAa~---------dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 507 GADLANLVNQAALKAAV---------DGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred hHHHHHHHHHHHHHHHh---------cCcccccHHHHhhhhhhe
Confidence 88888888888777622 233567777777766654
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=255.43 Aligned_cols=258 Identities=24% Similarity=0.350 Sum_probs=203.5
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCC-CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
......|++|.|++.+++.+++. +.+|.++++++..... .++.++||+||||||||++|+++|++.+. .
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~---VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-------~ 154 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQEL---VILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-------N 154 (386)
T ss_pred hhceeehhhccchHHHHHHHHHH---HhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-------C
Confidence 34567899999999999999987 7788888888753332 47889999999999999999999999987 8
Q ss_pred eEEeecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----C-cEEE
Q 011578 278 VTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----G-KVVV 348 (482)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~-~~~v 348 (482)
|+.+..+.+.++|+|++++.++.+|..| .++||||||+|++...|++.+|+.....-++|+..+|+ + +|+|
T Consensus 155 fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV 234 (386)
T KOG0737|consen 155 FINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLV 234 (386)
T ss_pred cceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEE
Confidence 9999999999999999999999999877 46999999999999999888899999999999999997 3 3555
Q ss_pred EEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 349 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
++|| +.+.+ + |.++.||++.+++++.|+.++|.+|++.+++++ ++.++++...++.++.+++++++
T Consensus 235 lgAT-NRP~D-l---DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e---------~~e~~vD~~~iA~~t~GySGSDL 300 (386)
T KOG0737|consen 235 LGAT-NRPFD-L---DEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE---------KLEDDVDLDEIAQMTEGYSGSDL 300 (386)
T ss_pred EeCC-CCCcc-H---HHHHHHhCcceeeeCCCchhhHHHHHHHHhccc---------ccCcccCHHHHHHhcCCCcHHHH
Confidence 5553 33332 2 888999999999999999999999999999876 46689999999999999886666
Q ss_pred ccccCcchhHHHHHHHHHH-----hhhhhcCCCCC-----hhhhhcccHHHHHHHHHHHHhc
Q 011578 429 RREMNGGLVDPMLVNAREN-----LDLRLSFDCLD-----TDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~-----~~~r~~~~~~~-----~~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|..+.+.++-+..... ....+...... .-..++++.+||..|...|.++
T Consensus 301 kelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 301 KELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 6555444444443322221 00000000000 0126799999999999976653
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=236.22 Aligned_cols=235 Identities=21% Similarity=0.300 Sum_probs=193.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..++-++|.+..++.|++. +..|-.+++++..++...|.++|||||||||||.+|+++|+.... .|+.++
T Consensus 144 StYeMiGgLd~QIkeIkEV---IeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-------~firvs 213 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEV---IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVS 213 (404)
T ss_pred cHHHHhccHHHHHHHHHHH---HhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEec
Confidence 4566678888888877776 778889999999999999999999999999999999999998876 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
+++++.+|+|+....++++|-.|+ ++|||.||||++.++|..++ +...++..-+||.++|+ +.+-||+||
T Consensus 214 gselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimat 293 (404)
T KOG0728|consen 214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT 293 (404)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEec
Confidence 999999999999999999997664 59999999999999886432 34445666677777776 678999996
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.-++ + ||+|++ |+|+.|+||+|+.+.|.+|++.+-+++. +..+++...+++...
T Consensus 294 nridi--l---d~allrpgridrkiefp~p~e~ar~~ilkihsrkmn---------l~rgi~l~kiaekm~--------- 350 (404)
T KOG0728|consen 294 NRIDI--L---DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN---------LTRGINLRKIAEKMP--------- 350 (404)
T ss_pred ccccc--c---cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc---------hhcccCHHHHHHhCC---------
Confidence 55444 3 899887 9999999999999999999999988764 456677666555544
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
.+.|++++.++-+|-..+ -++....+|.+||+-|..++..
T Consensus 351 gasgaevk~vcteagm~a---------lrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 351 GASGAEVKGVCTEAGMYA---------LRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred CCccchhhhhhhhhhHHH---------HHHhhccccHHHHHHHHHHHHh
Confidence 566899999998887765 2244567999999999888754
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=245.25 Aligned_cols=205 Identities=19% Similarity=0.233 Sum_probs=167.9
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
..--.|+++.|++..|+.|++. +..|...+.++..- ..+..++||||||||||+.||+++|-+.+. .|+
T Consensus 127 KPNVkWsDVAGLE~AKeALKEA---VILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFF 195 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEA---VILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFF 195 (439)
T ss_pred CCCCchhhhccchhHHHHHHhh---eeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceE
Confidence 3446799999999999999986 66666666665533 246789999999999999999999998876 899
Q ss_pred EeecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEe
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFA 351 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~ 351 (482)
.++.++++++|.|++++.++++|+.|+ ++||||||||.++.+|..++++..+++-.+||.+|++ ..+.|.+|
T Consensus 196 SvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 196 SVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred EeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 999999999999999999999998775 5999999999999999999999999999999999986 33556666
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|+..... |.+++|||+.+|.+|.|....|..+++.++...+- .++ +-+...|...++++++++.
T Consensus 276 TNiPw~L-----DsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~-------~LT-~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 276 TNIPWVL-----DSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH-------VLT-EQDFKELARKTEGYSGSDI 339 (439)
T ss_pred CCCchhH-----HHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc-------ccc-hhhHHHHHhhcCCCCcCce
Confidence 5544433 88999999999999999999999999999987652 122 2255556666666654443
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=241.46 Aligned_cols=236 Identities=20% Similarity=0.267 Sum_probs=196.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+.+++|+.+.++.+++. +..|..+++.+..++..+|+++|+|||||||||..||++|+.... .|+.+
T Consensus 173 dvty~dvggckeqieklrev---ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirv 242 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREV---VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRV 242 (435)
T ss_pred CcccccccchHHHHHHHHHH---HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEee
Confidence 45678899999988888887 677778888888899999999999999999999999999997765 89999
Q ss_pred ecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
-+|+++.+|+|+....++++|+.|+. ||||+||||.+...|..++ +...++..-+|+.++|+ |.+-|++|
T Consensus 243 igselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlma 322 (435)
T KOG0729|consen 243 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 322 (435)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEee
Confidence 99999999999999999999998865 9999999999999887553 33445555666677775 78888888
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..... +|+|.+ |+|+.++|..||.+.|..|++.+.+.+ .+..++..+.++.++...+
T Consensus 323 tnrpdtl-----dpallrpgrldrkvef~lpdlegrt~i~kihaksm---------sverdir~ellarlcpnst----- 383 (435)
T KOG0729|consen 323 TNRPDTL-----DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM---------SVERDIRFELLARLCPNST----- 383 (435)
T ss_pred cCCCCCc-----CHhhcCCcccccceeccCCcccccceeEEEecccc---------ccccchhHHHHHhhCCCCc-----
Confidence 7765554 888887 999999999999999999999987765 3556777788888887554
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
|+++++++-+|-..+. .......|+.||.+|..++.+
T Consensus 384 ----gaeirsvcteagmfai---------rarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 384 ----GAEIRSVCTEAGMFAI---------RARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred ----chHHHHHHHHhhHHHH---------HHHhhhhhHHHHHHHHHHHHH
Confidence 7889999988877652 234457899999999998754
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=234.12 Aligned_cols=236 Identities=24% Similarity=0.312 Sum_probs=193.2
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+++|+|++..++.+.+ .+..+..+++.+..++..+|+++|+|||||||||++||+.|..... .|+.+
T Consensus 167 tE~YsDiGGldkQIqELvE---AiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLKL 236 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVE---AIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLKL 236 (424)
T ss_pred cccccccccHHHHHHHHHH---HhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHHh
Confidence 4567889999977766665 4788888999999999999999999999999999999999987776 88899
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCC---hhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~---~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.++.++..|+|+..+.+++.|..|+ ++||||||+|.+..+|..++. ...++..-+||.++|+ .++-||+|
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 9999999999999999999998775 499999999999999875432 3334555566666776 56899999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.-.+. +|+|++ |+|+.|+||.|+.+.|.+|++.+-+++. +.+++..+.++.-+.
T Consensus 317 TNRvDiL-----DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn---------v~~DvNfeELaRsTd-------- 374 (424)
T KOG0652|consen 317 TNRVDIL-----DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN---------VSDDVNFEELARSTD-------- 374 (424)
T ss_pred ccccccc-----CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC---------CCCCCCHHHHhhccc--------
Confidence 6655443 899877 9999999999999999999999988764 556667666655444
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..||++++.++-+|-..+..|- ...|+-+||.+++.+++.
T Consensus 375 -dFNGAQcKAVcVEAGMiALRr~---------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 375 -DFNGAQCKAVCVEAGMIALRRG---------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred -ccCchhheeeehhhhHHHHhcc---------cccccHHHHHHHHHHHHH
Confidence 6789999999888888775552 257999999999988864
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=271.63 Aligned_cols=240 Identities=24% Similarity=0.350 Sum_probs=199.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|.+..|+.+++. +.++..+.+.....+..++.++||+||||||||++|+++|++++. +|+.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~---v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~-------~fi~v 307 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEA---IETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS-------RFISV 307 (494)
T ss_pred CcceehhhcHHHHHHHHHHH---HHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC-------eEEEe
Confidence 46788899999999999987 555556666555455667889999999999999999999998876 99999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCc
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 354 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~ 354 (482)
..+++.++|+|+++++++++|..|+ +|||||||+|++.+.|+.+.+....+++++|+..|++ ..++||+||+.
T Consensus 308 ~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 308 KGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred eCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999886 5999999999999999877776778999999999975 55777887655
Q ss_pred hhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 355 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
.... +|++++ |||..|.||+||.++|.+|++.++.+... .+..+++...+++++++ .
T Consensus 388 p~~l-----d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~-------~~~~~~~~~~l~~~t~~---------~ 446 (494)
T COG0464 388 PDDL-----DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP-------PLAEDVDLEELAEITEG---------Y 446 (494)
T ss_pred cccc-----CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC-------cchhhhhHHHHHHHhcC---------C
Confidence 4443 899999 99999999999999999999999986531 13346677777776664 4
Q ss_pred CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 433 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.|+++.+++++|......+.. ...+|.+||.+|+++++|+
T Consensus 447 sgadi~~i~~ea~~~~~~~~~--------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 447 SGADIAALVREAALEALREAR--------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc--------cCCccHHHHHHHHHhcCCC
Confidence 588999999999888644322 4579999999999998885
|
|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-32 Score=222.47 Aligned_cols=174 Identities=29% Similarity=0.378 Sum_probs=158.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
+.++.+.+|.......|++++...+..+|.+++..|+|||||||..|+.+++.+|+.+ .+..+|.+|..||||||+|
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~ddkDdaGWtPlhia 79 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ---PNVKPDDKDDAGWTPLHIA 79 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc---CCCCCCCccccCCchhhhh
Confidence 4678899999999999999999888888999986799999999999999999999974 7899999999999999999
Q ss_pred HHcCCHHHHHHHHhC-CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHH
Q 011578 93 AKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~ 171 (482)
|..|+.++|+.|+.+ |+|+|..++.|.||||+|+ .+|..+++++|+++|+.++++|..|.||||.||+ -|...+
T Consensus 80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa----gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAa-vGklkv 154 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA----GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAA-VGKLKV 154 (226)
T ss_pred hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh----cCChhhHHHHHHhcCCCCcccccccCchhHHHHh-ccchhh
Confidence 999999999999998 9999999999999999999 9999999999999999999999999999977766 567788
Q ss_pred HHHHHhhhHHHHHHhhHhhhhhh
Q 011578 172 RELLLWHSEEQRKRRALEACSET 194 (482)
Q Consensus 172 ~~lL~~~~~~~~~~~~~~~~~~~ 194 (482)
+++|...++..+.+.....++-.
T Consensus 155 ie~Li~~~a~~n~qDk~G~TpL~ 177 (226)
T KOG4412|consen 155 IEYLISQGAPLNTQDKYGFTPLH 177 (226)
T ss_pred HHHHHhcCCCCCcccccCccHHH
Confidence 89999998887777655555443
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-32 Score=240.78 Aligned_cols=235 Identities=20% Similarity=0.321 Sum_probs=190.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+.+++|++..++.|++. +..|..+++++..++..+|.+|+|||+||||||.||+++|+.... .|+.+
T Consensus 181 ~Ety~diGGle~QiQEiKEs---vELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA-------TFlRv 250 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKES---VELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLRV 250 (440)
T ss_pred hhhhcccccHHHHHHHHHHh---hcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch-------hhhhh
Confidence 46788999999998888876 778888899999999999999999999999999999999996655 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHH---HHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEA---LEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~---~~~ll~~l~~----~~~~vi~~ 351 (482)
.+++++.+|.|+..+.++++|.-|. ++|+||||||.+..+|.+..+...+++ .-+||.++|+ +.+-||+|
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 330 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence 9999999999999999999998764 599999999999999875444433444 4455556665 78999999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+ .++.+ ||+|.+ |+|+.|+||.||...+..||..+..++ .+..++..+.+-.--
T Consensus 331 Tn--rie~L---DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---------tl~~dVnle~li~~k--------- 387 (440)
T KOG0726|consen 331 TN--RIETL---DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---------TLAEDVNLEELIMTK--------- 387 (440)
T ss_pred cc--ccccc---CHhhcCCCccccccccCCCchhhhceeEEEeeccc---------chhccccHHHHhhcc---------
Confidence 44 44444 999988 999999999999999999999887765 344555544332221
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
....|++|++++-+|-..+ -++....++.+||..|.+.+.
T Consensus 388 ddlSGAdIkAictEaGllA---------lRerRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 388 DDLSGADIKAICTEAGLLA---------LRERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred cccccccHHHHHHHHhHHH---------HHHHHhhccHHHHHHHHHHHH
Confidence 2467899999999987765 235567899999999988874
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=257.06 Aligned_cols=235 Identities=21% Similarity=0.323 Sum_probs=183.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+|+.+.+....+ ...... ++...+.++||+||||||||++|+++|++++. +++.++
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~----~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~-------~~~~l~ 291 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSF--SKQASN----YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL-------PLLRLD 291 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHh--hHHHHh----cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEE
Confidence 46889999999999998764332 112222 34457889999999999999999999999876 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCC-CCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~-~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
.+.+.++|+|+++.+++++|..+ .+|||||||||+++..++. +++....+++++|++.|++ ..++||+||+..
T Consensus 292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~- 370 (489)
T CHL00195 292 VGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI- 370 (489)
T ss_pred hHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh-
Confidence 99999999999999999999765 4599999999999876543 3455667899999999975 446666664432
Q ss_pred HHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 357 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 357 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
..+ +|++++ |||..|+++.|+.++|.+|++.++++... ....+++.+.++..+. ..+|
T Consensus 371 -~~L---d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-------~~~~~~dl~~La~~T~---------GfSG 430 (489)
T CHL00195 371 -DLL---PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-------KSWKKYDIKKLSKLSN---------KFSG 430 (489)
T ss_pred -hhC---CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-------CcccccCHHHHHhhcC---------CCCH
Confidence 333 888876 99999999999999999999999987531 1112445566666655 4568
Q ss_pred chhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 435 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
++|++++..|...+.. +...++.+||.+|++++.|+.
T Consensus 431 AdI~~lv~eA~~~A~~----------~~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 431 AEIEQSIIEAMYIAFY----------EKREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHHHHHHHHHH----------cCCCcCHHHHHHHHHhcCCCc
Confidence 8999999988776521 224699999999999999974
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=252.02 Aligned_cols=236 Identities=21% Similarity=0.287 Sum_probs=188.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+++++++. +..+..+++.+..++..++.++||+||||||||++|+++|+.+.. +|+.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~---v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi~i 210 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREA---VELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFIRV 210 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHH---HHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 35789999999999999987 444555555555566678899999999999999999999998765 88999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.++.+..+|+|+++..++++|..+ .++||||||+|.+..++.+. .+....+++.+|+..|++ ..++||++
T Consensus 211 ~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~a 290 (398)
T PTZ00454 211 VGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 290 (398)
T ss_pred ehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999999999999776 45999999999998876432 233456788899998875 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.. +.+ +|++++ ||+..|+|+.|+.++|.+|++.++.+. .+..+++.+.++..+.
T Consensus 291 TN~~--d~L---DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---------~l~~dvd~~~la~~t~-------- 348 (398)
T PTZ00454 291 TNRA--DTL---DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---------NLSEEVDLEDFVSRPE-------- 348 (398)
T ss_pred cCCc--hhC---CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC---------CCCcccCHHHHHHHcC--------
Confidence 5533 333 888876 999999999999999999999988764 2445667666666555
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..++++|++++.+|...+..+ ....|+.+||.+|++++..
T Consensus 349 -g~sgaDI~~l~~eA~~~A~r~---------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 349 -KISAADIAAICQEAGMQAVRK---------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHHh
Confidence 456899999999998876433 2357999999999999754
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=255.50 Aligned_cols=216 Identities=20% Similarity=0.282 Sum_probs=184.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+++.|+.++|+.+.+. +.+|.+.+..+...+...+.++|||||||||||.+|-++|..++. .|+.+.
T Consensus 664 i~w~digg~~~~k~~l~~~---i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvK 733 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEV---IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVK 733 (952)
T ss_pred CCceecccHHHHHHHHHHH---HhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEec
Confidence 5689999999999999987 677788888888888888899999999999999999999998876 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.++|+|.++.++|.+|+.| ++||||+||+|+++|+|+.+++....+++|+||++||+ .-|.|++||+..
T Consensus 734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 99999999999999999999876 56999999999999999999999999999999999998 346777776655
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
++. ||+|+| |+|..+.-|.|++.+|.+|++...... .++..++.+-++..+.+++
T Consensus 814 dli-----DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~---------~~~~~vdl~~~a~~T~g~t--------- 870 (952)
T KOG0735|consen 814 DLI-----DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL---------LKDTDVDLECLAQKTDGFT--------- 870 (952)
T ss_pred ccc-----CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc---------CCccccchHHHhhhcCCCc---------
Confidence 553 899988 999999999999999999999876543 3456778888888888766
Q ss_pred cchhHHHHHHHHHHhhhh
Q 011578 434 GGLVDPMLVNARENLDLR 451 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r 451 (482)
|+++..++-.|...+..+
T Consensus 871 gADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 871 GADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 566666666665554433
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=274.73 Aligned_cols=246 Identities=22% Similarity=0.306 Sum_probs=195.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+|+.|.+. +.++..+++....++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~---v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-------~fi~v 518 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREA---VEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-------NFIAV 518 (733)
T ss_pred ccchhhcccHHHHHHHHHHH---HHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 34789999999999999987 444445555555556667889999999999999999999998875 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC-CChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~-~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
.++++.++|+|++++.++++|..|+ ++||||||+|.+++.++.. ++....+++++|+..|++ ..++||+||+
T Consensus 519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn 598 (733)
T TIGR01243 519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN 598 (733)
T ss_pred ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence 9999999999999999999998764 5999999999999988744 344567899999999985 5688888865
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... + +|++++ ||+..|+||.|+.++|.+||+.++++. .+..+++.+.++..+.+
T Consensus 599 ~~~~--l---d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---------~~~~~~~l~~la~~t~g--------- 655 (733)
T TIGR01243 599 RPDI--L---DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---------PLAEDVDLEELAEMTEG--------- 655 (733)
T ss_pred Chhh--C---CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHcCC---------
Confidence 4433 2 899986 999999999999999999999887654 34556677777777664
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC----CC-----hhhhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC----LD-----TDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~----~~-----~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..|+++.+++.+|...+..+..... .. ..+...|+.+||.+|+++++|.
T Consensus 656 ~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 656 YTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 4578888888888887666532211 00 1123479999999999999885
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=257.18 Aligned_cols=233 Identities=22% Similarity=0.331 Sum_probs=191.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+|+.|++++|+.|.+++..++.|.+...+| +..|+++||+||||||||+||||+|.+.+. ||+.++
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lG----AKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svS 376 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELG----AKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVS 376 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcC----CcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeec
Confidence 578999999999999999999998888877755 567899999999999999999999999988 999999
Q ss_pred cccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCC----CCChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKA----DDKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~----~~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++..++|....+++++|..|+. ||+||||||.+...|+. .+++.....+|+||..||+ +.++++++
T Consensus 377 GSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731|consen 377 GSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred hHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEec
Confidence 9999999999999999999998864 99999999999998852 3455667889999999997 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..+.. ||+|++ |||+.|.++.|+..+|.+|++.++++... . ...++...++.++.
T Consensus 457 tnr~d~l-----d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~-------~-~e~~dl~~~a~~t~-------- 515 (774)
T KOG0731|consen 457 TNRPDIL-----DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL-------D-DEDVDLSKLASLTP-------- 515 (774)
T ss_pred cCCcccc-----CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC-------C-cchhhHHHHHhcCC--------
Confidence 6655554 889888 99999999999999999999999987531 1 23334333444444
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
...|++|.|++.+|...++. .....|+.+||..|++++
T Consensus 516 -gf~gadl~n~~neaa~~a~r---------~~~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 516 -GFSGADLANLCNEAALLAAR---------KGLREIGTKDLEYAIERV 553 (774)
T ss_pred -CCcHHHHHhhhhHHHHHHHH---------hccCccchhhHHHHHHHH
Confidence 44578888888888776533 344679999999999854
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=249.31 Aligned_cols=236 Identities=22% Similarity=0.306 Sum_probs=189.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+..++.+.+. +..+..+++.+..++..++.++||+||||||||++|+++|+.++. +|+.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~---i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREA---VELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC-------CEEEee
Confidence 4678999999999999987 445556666666677788999999999999999999999998865 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++..+|+|+++..++++|..+. ++||||||+|.+.+++..+. +....+.+.+|+..+++ +.++||+||
T Consensus 198 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aT 277 (389)
T PRK03992 198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAAT 277 (389)
T ss_pred hHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEec
Confidence 999999999999999999998764 49999999999998776432 23345667788887774 578888886
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+... .+ +|++++ ||+..|+||.|+.++|.+|++.++++. .+..+++...++..+.+
T Consensus 278 n~~~--~l---d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~---------~~~~~~~~~~la~~t~g-------- 335 (389)
T PRK03992 278 NRID--IL---DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM---------NLADDVDLEELAELTEG-------- 335 (389)
T ss_pred CChh--hC---CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC---------CCCCcCCHHHHHHHcCC--------
Confidence 5443 23 888876 999999999999999999999988754 23445676777766654
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.+++++++++.+|...+..+ ....|+.+||.+|++++++.
T Consensus 336 -~sgadl~~l~~eA~~~a~~~---------~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 336 -ASGADLKAICTEAGMFAIRD---------DRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred -CCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhcc
Confidence 45889999999998876333 23469999999999999875
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=245.39 Aligned_cols=235 Identities=20% Similarity=0.306 Sum_probs=186.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++|+|++..++.+.+.+ ..+..+++.+..++..++.++||+||||||||++|+++|+++.. +|+.+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v---~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-------~fi~V~ 249 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAV---ELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-------TFLRVV 249 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHH---HhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------CEEEEe
Confidence 57889999999999999874 44555666656666778899999999999999999999998765 789999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+++..+|+|++...++++|..+. ++||||||||.+..++.... .....+.+..|+..+++ ..++||+||
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~AT 329 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMAT 329 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEec
Confidence 999999999999999999998763 48999999999998775322 23345667778888864 567888885
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+. .+.+ +|++++ ||+..|+|+.||.++|.+||+.++.+.. +..+++.+.++..+.
T Consensus 330 Nr--~d~L---DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~---------l~~dvdl~~la~~t~--------- 386 (438)
T PTZ00361 330 NR--IESL---DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT---------LAEDVDLEEFIMAKD--------- 386 (438)
T ss_pred CC--hHHh---hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC---------CCcCcCHHHHHHhcC---------
Confidence 53 3333 888875 9999999999999999999999987653 345666666666555
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+++++++++..|...+..+ ....|+.+||..|+.++..
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~---------~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRE---------RRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHHHh
Confidence 456889999999988876332 2357999999999999853
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=243.69 Aligned_cols=261 Identities=19% Similarity=0.219 Sum_probs=193.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRV 278 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~ 278 (482)
...|++|+|++..++++++. +..+..+++.+..++..++.++|||||||||||++|+++|+.+...... ....|
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~---v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDA---VELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCHHHcCChHHHHHHHHHH---HHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 35789999999999999987 4455666666666777788999999999999999999999998653221 23456
Q ss_pred EEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCC-CChhHHHHHHHHHhhhcC----CcE
Q 011578 279 TEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKV 346 (482)
Q Consensus 279 ~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~-~~~~~~~~~~~ll~~l~~----~~~ 346 (482)
+.+..+++.++|+|+++..++.+|..+ .++||||||+|.++++|+.+ +++....++++|+..|++ +.+
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 778888999999999999999998765 35899999999999887654 355567888999999986 567
Q ss_pred EEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 347 VVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 347 ~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
+||+||+.. +.+ ||+++| |||.+|+|+.|+.+++.+|++.++.+.... ...+......+...+..+++...
T Consensus 335 iVI~ATN~~--d~L---DpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 335 IVIGASNRE--DMI---DPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--DADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred EEEeccCCh--hhC---CHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--hHHHHHhcCCCHHHHHHHHHHHH
Confidence 888886543 333 999988 999999999999999999999998752110 00111112334444455544432
Q ss_pred hHh-----------------------hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 425 TEK-----------------------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 425 ~~~-----------------------~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
... ......|+.+++++++|...+..+.... ...-|+.+|+..|+..-
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-----~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-----GQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-----CCcCcCHHHHHHHHHHh
Confidence 110 1223579999999999999987775421 12478899999888753
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=244.21 Aligned_cols=235 Identities=23% Similarity=0.320 Sum_probs=194.3
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 201 ~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
....|.++.|.++.|+.+.+.+..++.|.+...+|. .-|.+++|.||||||||++||++|.+.+. ||+.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa----kiPkGvlLvGpPGTGKTLLAkAvAgEA~V-------PFf~ 213 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA----KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFS 213 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc----ccccceeEecCCCCCcHHHHHHHhcccCC-------Ccee
Confidence 346799999999999999999998988887776555 56789999999999999999999998887 9999
Q ss_pred eecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCC---CCChhHHHHHHHHHhhhcCC----cEEEEE
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDGG----KVVVIF 350 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~---~~~~~~~~~~~~ll~~l~~~----~~~vi~ 350 (482)
++.|+++..++|-..+.+|++|++|+ +||+||||+|.+...|.. ++++.-.+.+|+||..||+. -+++++
T Consensus 214 iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 214 ISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred ccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 99999999999999999999999886 599999999999998863 35666778999999999983 356666
Q ss_pred ecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 351 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
+|+..+.. ||+|+| |||+.|.++.||...|++|++.++++. .+.+.++...+++.+.+.+
T Consensus 294 aTNRpdVl-----D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---------~l~~~Vdl~~iAr~tpGfs---- 355 (596)
T COG0465 294 ATNRPDVL-----DPALLRPGRFDRQILVELPDIKGREQILKVHAKNK---------PLAEDVDLKKIARGTPGFS---- 355 (596)
T ss_pred cCCCcccc-----hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---------CCCCcCCHHHHhhhCCCcc----
Confidence 65444443 888888 999999999999999999999988765 4567788888777777655
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
|+++.|++.+|.-.++.+ ....|+..||.+|.+++.
T Consensus 356 -----GAdL~nl~NEAal~aar~---------n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 356 -----GADLANLLNEAALLAARR---------NKKEITMRDIEEAIDRVI 391 (596)
T ss_pred -----cchHhhhHHHHHHHHHHh---------cCeeEeccchHHHHHHHh
Confidence 677777777766655332 235688888888887763
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-29 Score=238.74 Aligned_cols=220 Identities=21% Similarity=0.284 Sum_probs=185.5
Q ss_pred CCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCC--------
Q 011578 236 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG-------- 307 (482)
Q Consensus 236 ~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-------- 307 (482)
..++..+-+++|||||||||||.+||.|.+.|+..- | -.++++++.++|||+++.++|++|..|+.
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----P-KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~ 322 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----P-KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGAN 322 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----C-cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCcc
Confidence 345667888999999999999999999999987522 2 24788999999999999999999987732
Q ss_pred ---cEEEEecccccccCCCCC--CChhHHHHHHHHHhhhcC----CcEEEEEecCchhHHHHHhcCccccC--CCcceee
Q 011578 308 ---GILFVDEAYRLIPMQKAD--DKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFH 376 (482)
Q Consensus 308 ---~vl~iDE~d~l~~~~~~~--~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~ 376 (482)
-||++||+|.++..|++. ++..+..++|+||..||+ +.+.||+-|+..++. |++|+| ||...++
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI-----DEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI-----DEALLRPGRLEVQME 397 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH-----HHHhcCCCceEEEEE
Confidence 599999999999998854 356778999999999998 889999987776665 777777 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcC-C
Q 011578 377 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-D 455 (482)
Q Consensus 377 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~-~ 455 (482)
+..||.+.|.+|++.+.+++.. .-.+..+++.+.|+.++..++ |++|..+|..|...+.+|... +
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre-----~~~l~~dVdl~elA~lTKNfS---------GAEleglVksA~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRE-----NNKLSADVDLKELAALTKNFS---------GAELEGLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhh-----cCCCCCCcCHHHHHHHhcCCc---------hhHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999998863 337888999999999999765 889999999999999988642 1
Q ss_pred -----CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 456 -----CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 456 -----~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.+...+...|+.+||..||.+++|.
T Consensus 464 ~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 464 GKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred cceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 1223456689999999999999984
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-28 Score=245.78 Aligned_cols=234 Identities=22% Similarity=0.326 Sum_probs=183.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+++++.+++..+..+...... +...+.++||+||||||||++|+++|++++. +|+.+
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~----g~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~i 119 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKL----GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI 119 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhc----CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------Ceeec
Confidence 357899999999999999987776655555443 3456789999999999999999999998765 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++...++|.+...++++|+.+. ++||||||+|.+.++++.+ .++...+++++|+..|++ +.++||+|
T Consensus 120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 9999999999999999999998764 4999999999999887642 244566889999999975 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+... .+ +|++++ |||..|+|+.|+.++|.+|++.++.... +..+++...++..+.
T Consensus 200 Tn~~~--~l---d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~---------~~~~~~l~~la~~t~-------- 257 (495)
T TIGR01241 200 TNRPD--VL---DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK---------LAPDVDLKAVARRTP-------- 257 (495)
T ss_pred cCChh--hc---CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC---------CCcchhHHHHHHhCC--------
Confidence 64433 23 888876 9999999999999999999999987642 223344444444443
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..+++++++++++|...+..+ ....|+.+||++|++.+.
T Consensus 258 -G~sgadl~~l~~eA~~~a~~~---------~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 258 -GFSGADLANLLNEAALLAARK---------NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHh
Confidence 456789999999886654221 224699999999999875
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-29 Score=241.59 Aligned_cols=170 Identities=28% Similarity=0.352 Sum_probs=151.8
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.|+|||||.+++++++++|++ ++.++|......+.|||||||++|+..+|.+|++ .|++++.+|.+|.
T Consensus 72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq----hGAdpt~~D~~G~ 146 (600)
T KOG0509|consen 72 NNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ----HGADPTLKDKQGL 146 (600)
T ss_pred CCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH----cCCCCceecCCCC
Confidence 3455689999999999999999999994 5777999987779999999999999999999999 5889999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC-CCCCChhhhhhcC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNG 165 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl~~~a~~ 165 (482)
||||+||+.|+.-+|-||+.+|+|+|.+|.+|+||||+|+ .+|+...+..|++.|++++..| ..|.||||+++..
T Consensus 147 ~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa----ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~ 222 (600)
T KOG0509|consen 147 TPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA----YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVG 222 (600)
T ss_pred cHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH----HhcccHHHHHHHHhcccccccccccCCchHHHHHhc
Confidence 9999999999999999999999999999999999999999 7777777999999999999998 8999999777776
Q ss_pred CCChHHHHHHHhhhHHHHHHh
Q 011578 166 PGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++...+. +|++.|++..+++
T Consensus 223 gN~~~v~-Ll~~g~~~~d~~~ 242 (600)
T KOG0509|consen 223 GNLTAVK-LLLEGGADLDKTN 242 (600)
T ss_pred CCcceEe-hhhhcCCcccccc
Confidence 5555555 8888877766554
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=233.19 Aligned_cols=246 Identities=22% Similarity=0.284 Sum_probs=201.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+++.|.+.+|+.+.+. +.++..++..+..+.. +..++||+||||||||++++++|.+... .|+.++
T Consensus 150 v~~~di~gl~~~k~~l~e~---vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~a-------tff~iS 218 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEA---VILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGA-------TFFNIS 218 (428)
T ss_pred ccccCCcchhhHHHHhhhh---hhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcc-------eEeecc
Confidence 5688999999999999987 7778888888877764 6779999999999999999999999988 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecC
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY 353 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~ 353 (482)
++.+.++|+|++++.++.+|.-| .++|+||||+|+++.+|..+.++..++...+++-+++. .+|+||+||+
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 99999999999999999999766 45999999999999999877889999999998888875 4677777755
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
..... |.++++||..++.+|.|+.+.|..++...|++... .+ .+.+.+.++.+++++ +
T Consensus 299 ~P~e~-----Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~-------~l-~~~d~~~l~~~Tegy---------s 356 (428)
T KOG0740|consen 299 RPWEL-----DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPN-------GL-SDLDISLLAKVTEGY---------S 356 (428)
T ss_pred CchHH-----HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCC-------Cc-cHHHHHHHHHHhcCc---------c
Confidence 44332 88889999999999999999999999999998631 11 123455566666654 5
Q ss_pred cchhHHHHHHHHHHhhhhhc----CCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 434 GGLVDPMLVNARENLDLRLS----FDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~----~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
+.++.+++..|..--...+- .+....+..+.++..||+++++.++|..
T Consensus 357 gsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 357 GSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred cccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 77888888887664332221 2335567788999999999999999864
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-28 Score=227.07 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=86.1
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+|+..|+.+.++.|+.. +.+++..+ |+||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d---~~TpLh~Aa~~g~~eiV~lLL~----~Gadvn~~d~~G~Tp 97 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLE---NEFPLHQAATLEDTKIVKILLF----SGMDDSQFDDKGNTA 97 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCC---CCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCH
Confidence 344555555555555555555555532 33333322 4555555555555555555555 344555555555555
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCC---------------------------------CcceeeehhhccCCChH
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNG---------------------------------MTPLHLSVWYSIRSEDY 135 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g---------------------------------~tpLh~A~~~~~~~~~~ 135 (482)
||+|+..|+.+++++|+++|++++.++..| +||||+|+ ..|+.
T Consensus 98 Lh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa----~~g~~ 173 (284)
T PHA02791 98 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI----KNGHV 173 (284)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHH----HcCCH
Confidence 555555555555555555555555544444 45555555 44555
Q ss_pred HHHHHHhhCCCCccccCCCCCCh-hhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 136 ATVKTLLEYNADCSAKDNEGKTP-LDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 136 ~~v~~Ll~~gad~~~~d~~g~tp-l~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+++++|+++|++++.+|..|.|| | |.|+..++.+++++|+.+|++.+.+
T Consensus 174 eiv~lLL~~gAd~n~~d~~g~t~~L-~~Aa~~~~~e~v~lLl~~Ga~in~~ 223 (284)
T PHA02791 174 DMMILLLDYMTSTNTNNSLLFIPDI-KLAIDNKDLEMLQALFKYDINIYSV 223 (284)
T ss_pred HHHHHHHHCCCCCCcccCCCCChHH-HHHHHcCCHHHHHHHHHCCCCCccC
Confidence 55555555555555555555544 4 3333344555555555555554433
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=216.99 Aligned_cols=233 Identities=23% Similarity=0.304 Sum_probs=189.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|+.+.|.-.+...+++. +..+...++++..++..+|.++++|||||||||.+|+++|..++. .|+.+.+
T Consensus 130 s~~~~ggl~~qirelre~---ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-------nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREV---IELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-------NFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHhh---eEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-------ceEEeeH
Confidence 567788877776666654 788889999999999999999999999999999999999998877 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHH---HHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGI---EALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~---~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+.++++|+|++++.+++.|..|+ +||||+||||.....+.+..+...+ +.+-+|+.+|++ ++|-+|+||+
T Consensus 200 s~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN 279 (388)
T KOG0651|consen 200 SALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN 279 (388)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC
Confidence 99999999999999999998875 4999999999999887655444444 445555556665 7899999976
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
...+. +|+|++ |+|+.++.|.|+...|..|++.+-... .....++.+++.++.++
T Consensus 280 rpdtL-----dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i---------~~~Geid~eaivK~~d~--------- 336 (388)
T KOG0651|consen 280 RPDTL-----DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI---------DFHGEIDDEAILKLVDG--------- 336 (388)
T ss_pred Ccccc-----chhhcCCccccceeccCCcchhhceeeEeeccccc---------cccccccHHHHHHHHhc---------
Confidence 65554 889887 999999999999999999988776544 34567788999988884
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.||+++++.+.+|-..+ .+++...+..+||..+..++.
T Consensus 337 f~gad~rn~~tEag~Fa---------~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 337 FNGADLRNVCTEAGMFA---------IPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred cChHHHhhhcccccccc---------cchhhHHHhHHHHHHHHHHHH
Confidence 56788888877775332 346667788899988877654
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=215.73 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=145.4
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC--cHHHHHHHHcCCCCCCcccccCc-CCCC
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQN-MYGE 86 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~-~~g~ 86 (482)
.+...||||+|+..|+.+.|+.|+.. ++..+.. |.||||+|+..+ +.+++++|++ .|++++.++ ..|.
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~-g~TpLh~a~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~ 88 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDL-YETPIFSCLEKDKVNVEILKFLIE----NGADVNFKTRDNNL 88 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCcc-CCCHHHHHHHcCCCCHHHHHHHHH----CCCCCCccCCCCCC
Confidence 56789999999999999999999853 4556665 999999999854 8999999999 688999987 5899
Q ss_pred hHHHHHHHc---CCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 87 TPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 87 tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+.. ..++.+++++|+++|++++.+|..|.||||.++
T Consensus 89 TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~--~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a 166 (209)
T PHA02859 89 SALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCN--FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI 166 (209)
T ss_pred CHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh--ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Confidence 999998864 479999999999999999999999999998721 246899999999999999999999999997677
Q ss_pred cCCCChHHHHHHHhhhHHHHHHhh
Q 011578 164 NGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
...++.+++++|+.+|++.+.+..
T Consensus 167 ~~~~~~~iv~~Ll~~Gadi~~~d~ 190 (209)
T PHA02859 167 LFHSDKKIFDFLTSLGIDINETNK 190 (209)
T ss_pred HhcCCHHHHHHHHHcCCCCCCCCC
Confidence 777889999999999988765543
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-27 Score=220.69 Aligned_cols=143 Identities=20% Similarity=0.120 Sum_probs=122.0
Q ss_pred cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHH
Q 011578 23 SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102 (482)
Q Consensus 23 ~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~ 102 (482)
.++.++++.|+.+ +. +..+.. |+||||+|+..|+.+++++|++ .+++++..+ |+||||+|+..|+.++++
T Consensus 9 ~~~~~~~~~Lis~-~a--~~~D~~-G~TpLh~Aa~~g~~eiv~~Ll~----~ga~~n~~d--~~TpLh~Aa~~g~~eiV~ 78 (284)
T PHA02791 9 WKSKQLKSFLSSK-DA--FKADVH-GHSALYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQAATLEDTKIVK 78 (284)
T ss_pred cCHHHHHHHHHhC-CC--CCCCCC-CCcHHHHHHHcCCHHHHHHHHH----CcCCCcCCC--CCCHHHHHHHCCCHHHHH
Confidence 4566777776654 44 445555 9999999999999999999999 466677654 789999999999999999
Q ss_pred HHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC-ChhhhhhcCCCChHHHHHHHhhhH
Q 011578 103 LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 103 ~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~-tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
+|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.++..|+ ||||+|+ ..++.+++++|+.++.
T Consensus 79 lLL~~Gadvn~~d~~G~TpLh~Aa----~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa-~~g~~eivk~LL~~~~ 152 (284)
T PHA02791 79 ILLFSGMDDSQFDDKGNTALYYAV----DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-MLNDVSIVSYFLSEIP 152 (284)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHH-HcCCHHHHHHHHhcCC
Confidence 999999999999999999999999 88999999999999999999999986 8995554 5667788888887654
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-27 Score=228.98 Aligned_cols=233 Identities=23% Similarity=0.313 Sum_probs=181.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|.+..++.+++.+. .+..++..+..++..++.+++|+||||||||++|+++|+.+.. +|+.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~---~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVE---LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEecc
Confidence 457899999999999998743 4444555555566678899999999999999999999998765 788888
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+.+..+|+|++...++.+|+.+. ++||||||+|.+..++.... +....+.+..++..+++ +.++||+||
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~tt 268 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAAT 268 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 888889999999999999997764 48999999999987765332 22345667778777763 567788776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+... .+ +|++++ ||+..|+|+.|+.++|.+|++.++.+. .+..+++.+.++..+.+
T Consensus 269 n~~~--~l---d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~---------~l~~~~~~~~la~~t~g-------- 326 (364)
T TIGR01242 269 NRPD--IL---DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM---------KLAEDVDLEAIAKMTEG-------- 326 (364)
T ss_pred CChh--hC---ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC---------CCCccCCHHHHHHHcCC--------
Confidence 5433 22 888876 999999999999999999999987654 23345666777766653
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
.+++++++++..|...+..+ ....|+.+||.+|+.++
T Consensus 327 -~sg~dl~~l~~~A~~~a~~~---------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 327 -ASGADLKAICTEAGMFAIRE---------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred -CCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHh
Confidence 45889999999988876333 23579999999999886
|
Many proteins may score above the trusted cutoff because an internal |
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=235.68 Aligned_cols=232 Identities=23% Similarity=0.347 Sum_probs=181.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.+++.+.+.+..+..+..... ++...+.++||+||||||||++|+++|++++. +|+.++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~----~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is 248 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTA----VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSIS 248 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhh----ccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------Ceeecc
Confidence 4789999999999999998777665554433 44567889999999999999999999998865 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++...++|.+...++++|..+. ++||||||+|.+...|+.+ .++....++++|+..|++ ..++||++|
T Consensus 249 ~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT 328 (638)
T CHL00176 249 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT 328 (638)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec
Confidence 999988899988888999998764 4899999999998876532 345566889999999975 457777775
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... + +|++++ |||..+.|+.|+.++|.+|++.++++.. +.++ ..+..++....
T Consensus 329 N~~~~--L---D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---------~~~d---~~l~~lA~~t~------ 385 (638)
T CHL00176 329 NRVDI--L---DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---------LSPD---VSLELIARRTP------ 385 (638)
T ss_pred CchHh--h---hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---------cchh---HHHHHHHhcCC------
Confidence 54332 2 788876 9999999999999999999999988632 2222 33444444332
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
..++++|++++.+|...+..+ ....|+.+||.+|+.++
T Consensus 386 G~sgaDL~~lvneAal~a~r~---------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 386 GFSGADLANLLNEAAILTARR---------KKATITMKEIDTAIDRV 423 (638)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 468999999999987765322 22469999999999886
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=213.51 Aligned_cols=184 Identities=16% Similarity=0.233 Sum_probs=140.1
Q ss_pred CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC--------CcE
Q 011578 238 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE--------GGI 309 (482)
Q Consensus 238 ~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~--------~~v 309 (482)
.+..+|..++||||||||||++|+++|++++. +|+.++++++.++|+|+++++++++|+.|. +||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 34568899999999999999999999999987 899999999999999999999999998763 699
Q ss_pred EEEecccccccCCCCCCChhHHHHH-HHHHhhhcC----------------CcEEEEEecCchhHHHHHhcCccccC--C
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEAL-EEIMSVMDG----------------GKVVVIFAGYSEPMKRVIASNEGFCR--R 370 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~-~~ll~~l~~----------------~~~~vi~~~~~~~~~~~~~~~~~l~~--R 370 (482)
|||||||.+++.+.+.+.....+++ .+|+..||+ ..++||+||+.. +.+ +|+|+| |
T Consensus 216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp--d~L---DpALlRpGR 290 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF--STL---YAPLIRDGR 290 (413)
T ss_pred EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc--ccC---CHhHcCCCC
Confidence 9999999999988755555545554 799988752 346777775433 333 999999 9
Q ss_pred CcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 371 VTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 371 ~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
||..+ ..|+.++|.+|++.++++. +++...+..++..+.+.... .-|+.-..+.+.+++.+..
T Consensus 291 fDk~i--~lPd~e~R~eIL~~~~r~~-------------~l~~~dv~~Lv~~f~gq~~D--f~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 291 MEKFY--WAPTREDRIGVVHGIFRDD-------------GVSREDVVKLVDTFPGQPLD--FFGALRARVYDDEVRKWIA 353 (413)
T ss_pred CCcee--CCCCHHHHHHHHHHHhccC-------------CCCHHHHHHHHHcCCCCCch--hhhHHHHHHHHHHHHHHHH
Confidence 99865 5899999999999998863 34567788888776433221 1222223444444444443
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=215.01 Aligned_cols=213 Identities=23% Similarity=0.303 Sum_probs=167.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.+.+++++||+.+...-.-+...+ ......+++|||||||||||+|+.||+..+. .|..+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-------~f~~~ 79 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-------AFEAL 79 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-------ceEEe
Confidence 356889999998864322221222 2456789999999999999999999998877 78887
Q ss_pred ecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++... +-+.++++|++| +..|||||||++|...+| +.||..|++|.+++|+|||.
T Consensus 80 sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 80 SAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVENGTIILIGATTE 141 (436)
T ss_pred ccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhcCCeEEEEeccCC
Confidence 76442 335678888776 248999999999999988 99999999999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
||...+ +|+|++|. .+++|.+++.+++.+++++-+....+ ++ .....++++++..+.... .|+
T Consensus 142 NPsF~l---n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~r-----gl~~~~~~i~~~a~~~l~~~s-------~GD 205 (436)
T COG2256 142 NPSFEL---NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEER-----GLGGQIIVLDEEALDYLVRLS-------NGD 205 (436)
T ss_pred CCCeee---cHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhc-----CCCcccccCCHHHHHHHHHhc-------Cch
Confidence 998877 99999999 99999999999999999996555543 44 244557888888888865 578
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 434 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
+|..-|.+|.+.... .+. ..++.+++++.+++-.+
T Consensus 206 ~R~aLN~LE~~~~~~---------~~~--~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 206 ARRALNLLELAALSA---------EPD--EVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHHHHHHhc---------CCC--cccCHHHHHHHHhhhhh
Confidence 888899999887764 111 14457788877776554
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=237.39 Aligned_cols=252 Identities=23% Similarity=0.254 Sum_probs=204.0
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.++.++++. +..+..+++.+..+...+|.++||+||||||||++|+++|..+.. ......|+.-
T Consensus 261 ~v~fd~vggl~~~i~~LKEm---Vl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~--~~~kisffmr 335 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEM---VLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR--GNRKISFFMR 335 (1080)
T ss_pred ccCccccccHHHHHHHHHHH---HHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc--cccccchhhh
Confidence 35689999999999999987 777888888889899999999999999999999999999998843 2223467777
Q ss_pred ecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCc
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 354 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~ 354 (482)
.+++..++|+|+.+..++-+|++|+. +|+|+||||.|+|.|++-.......++.+||..|++ |.|+||+||+.
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 88899999999999999999998865 999999999999998755555566888999999987 88999999765
Q ss_pred hhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 355 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
.+.. +|++++ |||+.+.||.|+.++|.+|+..+-.+.. +.+....+..++.... .+
T Consensus 416 pda~-----dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-----------~~i~~~l~~~la~~t~------gy 473 (1080)
T KOG0732|consen 416 PDAI-----DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-----------PPISRELLLWLAEETS------GY 473 (1080)
T ss_pred cccc-----chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-----------CCCCHHHHHHHHHhcc------cc
Confidence 5443 899976 9999999999999999999999877653 4556666666666554 56
Q ss_pred CcchhHHHHHHHHHHhhhhhcC------CC-CChhhhhcccHHHHHHHHHHHHhc
Q 011578 433 NGGLVDPMLVNARENLDLRLSF------DC-LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~------~~-~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.|++|+.++.+|......|-.- +. ........+...||..|+.++.|.
T Consensus 474 ~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 474 GGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred chHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 6888999999998887666321 11 111123348999999999988763
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=230.27 Aligned_cols=171 Identities=22% Similarity=0.226 Sum_probs=128.6
Q ss_pred ccccccCC-CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccc-cc
Q 011578 3 KNQDRRSR-SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-EA 80 (482)
Q Consensus 3 ~~~~~~~~-~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~ 80 (482)
.|.+.... ..|.||||+|+..|+.+.++.|+.. +.+++..+.. +.||||+|+..|+.+++++|+++ +..+ +.
T Consensus 24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~ 97 (413)
T PHA02875 24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPD-IESELHDAVEEGDVKAVEELLDL----GKFADDV 97 (413)
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCC-cccHHHHHHHCCCHHHHHHHHHc----CCccccc
Confidence 45444443 3788889988888888888888754 5556666554 78888888888888888888874 3322 34
Q ss_pred CcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhh
Q 011578 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 81 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
.+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||
T Consensus 98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~----~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~ 173 (413)
T PHA02875 98 FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV----MMGDIKGIELLIDHKACLDIEDCCGCTPLI 173 (413)
T ss_pred ccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4566888888888888888888888888888888888888888888 777888888888888888888888888884
Q ss_pred hhhcCCCChHHHHHHHhhhHHHHH
Q 011578 161 HLSNGPGSAKLRELLLWHSEEQRK 184 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~~ 184 (482)
+|+ ..++.+++++|+++|++++.
T Consensus 174 ~A~-~~g~~eiv~~Ll~~ga~~n~ 196 (413)
T PHA02875 174 IAM-AKGDIAICKMLLDSGANIDY 196 (413)
T ss_pred HHH-HcCCHHHHHHHHhCCCCCCc
Confidence 444 45667777888887777654
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=234.53 Aligned_cols=171 Identities=23% Similarity=0.286 Sum_probs=148.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCC-----------------
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG----------------- 72 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~----------------- 72 (482)
+..+.||||+||..|+.+.|+.|+. .+.++|..+.. |+||||+||..|+.+++++|++.+.
T Consensus 34 ~~~~~tPLh~A~~~g~~e~vk~Ll~-~gadvn~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~ 111 (477)
T PHA02878 34 SLIPFIPLHQAVEARNLDVVKSLLT-RGHNVNQPDHR-DLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNN 111 (477)
T ss_pred cccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence 4467899999999999999999995 57789998886 9999999998876655444443210
Q ss_pred -------------------------------------------CCCcccccCcCC-CChHHHHHHHcCCHHHHHHHHhCC
Q 011578 73 -------------------------------------------NDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLLAHG 108 (482)
Q Consensus 73 -------------------------------------------~~~~~~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~g 108 (482)
..|++++.++.. |.||||+|+..|+.+++++|+++|
T Consensus 112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g 191 (477)
T PHA02878 112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG 191 (477)
T ss_pred CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC
Confidence 046778888888 999999999999999999999999
Q ss_pred CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 109 a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+...+..+++++|+++|++.+.+.
T Consensus 192 ad~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~ 265 (477)
T PHA02878 192 ANVNIPDKTNNSPLHHAV----KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265 (477)
T ss_pred CCCCCcCCCCCCHHHHHH----HhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence 999999999999999999 88999999999999999999999999999887776678899999999998876543
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=224.52 Aligned_cols=163 Identities=30% Similarity=0.359 Sum_probs=146.1
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMA 92 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpLh~A 92 (482)
..-++.|++.|+++.|+.+++..+..++..|.. |.|+|||||.+++.+++++|++ .++++|..+ ..+.||||||
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~-g~tlLHWAAiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWA 119 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDRE-GVTLLHWAAINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWA 119 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcC-CccceeHHHHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHH
Confidence 456889999999999999998768889999986 9999999999999999999999 588899888 7789999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
|++|++.+|.+|+++|||++.+|.+|.||||.|+ ..++.-+|-+||.+|+|++.+|.+|+||||+||.++.... +
T Consensus 120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~----~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~-v 194 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA----QFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF-V 194 (600)
T ss_pred HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH----HhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH-H
Confidence 9999999999999999999999999999999999 8889999999999999999999999999977777665555 6
Q ss_pred HHHHhhhHHHHHHh
Q 011578 173 ELLLWHSEEQRKRR 186 (482)
Q Consensus 173 ~lL~~~~~~~~~~~ 186 (482)
..|+..++....++
T Consensus 195 ~~LL~f~a~~~~~d 208 (600)
T KOG0509|consen 195 RRLLKFGASLLLTD 208 (600)
T ss_pred HHHHHhcccccccc
Confidence 66666666554443
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-26 Score=222.02 Aligned_cols=228 Identities=24% Similarity=0.320 Sum_probs=180.9
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
.++.|.......+++. +.++.+.+......+..+|.++|+|||||||||.+++++|++.+. .++.+++++
T Consensus 184 ~~~gg~~~~~~~i~e~---v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-------~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIREL---VELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-------FLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHH---HHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-------eeEecccHH
Confidence 3566666666666665 778888888888889999999999999999999999999999986 889999999
Q ss_pred ccccccccchhhHHHHHHhcC----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCchhH
Q 011578 286 LVGEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPM 357 (482)
Q Consensus 286 ~~~~~~g~~~~~~~~~~~~a~----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~~ 357 (482)
+.+++.|+++++++++|+++. +++|||||+|.+.++|..... ..+++..+|++.|++ ++++|+.++++...
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS 332 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence 999999999999999998873 589999999999998875444 678999999999986 56777777554333
Q ss_pred HHHHhcCccccC-CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 358 KRVIASNEGFCR-RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 358 ~~~~~~~~~l~~-R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. +|+++| |||..+.+..|+..+|.+|++.+.+++. ...+.+...++..+.++. |++
T Consensus 333 l-----d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~---------~~~~~~l~~iA~~thGyv---------GaD 389 (693)
T KOG0730|consen 333 L-----DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN---------LLSDVDLEDIAVSTHGYV---------GAD 389 (693)
T ss_pred c-----ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcC---------CcchhhHHHHHHHccchh---------HHH
Confidence 2 899996 9999999999999999999999998764 334456677777777666 566
Q ss_pred hHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 437 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 437 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
+..++..|...+..| +++||..|+..++|.+
T Consensus 390 L~~l~~ea~~~~~r~--------------~~~~~~~A~~~i~psa 420 (693)
T KOG0730|consen 390 LAALCREASLQATRR--------------TLEIFQEALMGIRPSA 420 (693)
T ss_pred HHHHHHHHHHHHhhh--------------hHHHHHHHHhcCCchh
Confidence 666666666655333 4555555555555544
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-26 Score=227.31 Aligned_cols=163 Identities=23% Similarity=0.293 Sum_probs=101.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.||||.|+..|+.+.|+.|+..+....+..+.. |+||||+|+..|+.+++++|++ .|++++.++..|.||||
T Consensus 66 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~----~gad~~~~~~~g~tpLh 140 (413)
T PHA02875 66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLDIMKLLIA----RGADPDIPNTDKFSPLH 140 (413)
T ss_pred CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCCHHH
Confidence 455666666666666666666665443333333333 6666666666666666666666 35566666666666666
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC-ChhhhhhcCCCCh
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSA 169 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~-tpl~~~a~~~~~~ 169 (482)
+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++..+..|. ||+ +.|...++.
T Consensus 141 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~----~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l-~~A~~~~~~ 215 (413)
T PHA02875 141 LAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAM----AKGDIAICKMLLDSGANIDYFGKNGCVAAL-CYAIENNKI 215 (413)
T ss_pred HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHhCCCCCCcCCCCCCchHH-HHHHHcCCH
Confidence 666666666666666666666666666666666666 55666666666666666666666654 344 434445566
Q ss_pred HHHHHHHhhhHHHH
Q 011578 170 KLRELLLWHSEEQR 183 (482)
Q Consensus 170 ~~~~lL~~~~~~~~ 183 (482)
+++++|+++|++.+
T Consensus 216 ~iv~~Ll~~gad~n 229 (413)
T PHA02875 216 DIVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHHHCCcCcc
Confidence 66666666666554
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=202.27 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=130.7
Q ss_pred cCCCCCchHhHHHHHcC--CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccccCc
Q 011578 8 RSRSAKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
..+..|.||||.|+..+ +.++++.|| +.+.++|..+...|+||||+|+.. ++.+++++|++ .|+++|.+|
T Consensus 46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll-~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~----~gadin~~d 120 (209)
T PHA02859 46 DCNDLYETPIFSCLEKDKVNVEILKFLI-ENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILID----SGSSITEED 120 (209)
T ss_pred ccCccCCCHHHHHHHcCCCCHHHHHHHH-HCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHH----CCCCCCCcC
Confidence 35678999999999854 899999888 557788888754499999998864 47999999999 688999999
Q ss_pred CCCChHHHHHHH--cCCHHHHHHHHhCCCCccccccCCCcceee-ehhhccCCChHHHHHHHhhCCCCccccCCCCCChh
Q 011578 83 MYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGMTPLHL-SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (482)
Q Consensus 83 ~~g~tpLh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~-A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 159 (482)
..|.||||+|+. .++.+++++|+++|++++.+|.+|+||||. |+ ..++.+++++|+++|++++.+|..|+|||
T Consensus 121 ~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~----~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl 196 (209)
T PHA02859 121 EDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYIL----FHSDKKIFDFLTSLGIDINETNKSGYNCY 196 (209)
T ss_pred CCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHH----hcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 999999999876 468999999999999999999999999996 45 56789999999999999999999999999
Q ss_pred hhhhcC
Q 011578 160 DHLSNG 165 (482)
Q Consensus 160 ~~~a~~ 165 (482)
|+|+.+
T Consensus 197 ~la~~~ 202 (209)
T PHA02859 197 DLIKFR 202 (209)
T ss_pred HHHhhh
Confidence 766543
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=227.25 Aligned_cols=171 Identities=24% Similarity=0.341 Sum_probs=153.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC--------------
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-------------- 73 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------- 73 (482)
.....+.||||.|+..|+.+.|+.|+ +.|.++|..+.. |.||||+|+..|+.+++++|+++|++
T Consensus 30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll-~~Ga~~n~~~~~-~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i 107 (434)
T PHA02874 30 ISVDETTTPLIDAIRSGDAKIVELFI-KHGADINHINTK-IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMI 107 (434)
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHH
Confidence 44567899999999999999999988 457778888876 99999999999999999999997653
Q ss_pred -----CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 74 -----DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 74 -----~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|+++
T Consensus 108 ~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~g~~~ 183 (434)
T PHA02874 108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI----KHNFFDIIKLLLEKGAYA 183 (434)
T ss_pred HHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH----HCCcHHHHHHHHHCCCCC
Confidence 35678889999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 149 SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 149 ~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+..|..|+||||+| +..++.+++++|+++|++...+
T Consensus 184 n~~~~~g~tpL~~A-~~~g~~~iv~~Ll~~g~~i~~~ 219 (434)
T PHA02874 184 NVKDNNGESPLHNA-AEYGDYACIKLLIDHGNHIMNK 219 (434)
T ss_pred CCCCCCCCCHHHHH-HHcCCHHHHHHHHhCCCCCcCC
Confidence 99999999999554 5567889999999998875544
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=209.15 Aligned_cols=163 Identities=26% Similarity=0.312 Sum_probs=135.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC-------CCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN-------PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-------~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
...|.|||..||++|+.++|++||++.+..+.... ...|-+||-.|+..||+++|+.|++ .++++|...
T Consensus 39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~----~ga~VN~tT 114 (615)
T KOG0508|consen 39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR----RGASVNDTT 114 (615)
T ss_pred ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH----hcCcccccc
Confidence 45677999999999999999999886655543221 1137788888888899999999998 467888887
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
.-..|||-.||.-|+.++|++|+++|+|++..|++|+|.||+|| .+||.+++++|++.|+|+|.++..|+|+| |-
T Consensus 115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~----ykGh~~I~qyLle~gADvn~ks~kGNTAL-H~ 189 (615)
T KOG0508|consen 115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC----YKGHVDIAQYLLEQGADVNAKSYKGNTAL-HD 189 (615)
T ss_pred ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee----ccCchHHHHHHHHhCCCcchhcccCchHH-Hh
Confidence 77789999999999999999999999999999999999999999 88899999999999999999999999999 66
Q ss_pred hcCCCChHHHHHHHhhhHH
Q 011578 163 SNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 163 a~~~~~~~~~~lL~~~~~~ 181 (482)
|+..|+.+++++|+.+|+.
T Consensus 190 caEsG~vdivq~Ll~~ga~ 208 (615)
T KOG0508|consen 190 CAESGSVDIVQLLLKHGAK 208 (615)
T ss_pred hhhcccHHHHHHHHhCCce
Confidence 6667888888888887654
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=226.73 Aligned_cols=156 Identities=28% Similarity=0.348 Sum_probs=140.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
|.||||+||..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 168 g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~----~ga~in~~d~~g~TpLh~A 241 (477)
T PHA02878 168 GNTALHYATENKDQRLTELLLS-YGANVNIPDKT-NNSPLHHAVKHYNKPIVHILLE----NGASTDARDKCGNTPLHIS 241 (477)
T ss_pred CCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999885 57788888876 9999999999999999999999 6889999999999999999
Q ss_pred HHc-CCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChH
Q 011578 93 AKN-GCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (482)
Q Consensus 93 ~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~ 170 (482)
+.. ++.+++++|+++|++++.++. .|+||||+|+ ++.+++++|+++|+|+|.+|..|+||||+|+......+
T Consensus 242 ~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~------~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~ 315 (477)
T PHA02878 242 VGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI------KSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCIN 315 (477)
T ss_pred HHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc------cCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccc
Confidence 975 789999999999999999886 7999999996 36789999999999999999999999988776655666
Q ss_pred HHHHHHhhhH
Q 011578 171 LRELLLWHSE 180 (482)
Q Consensus 171 ~~~lL~~~~~ 180 (482)
+.++|.....
T Consensus 316 ~~~~li~~~~ 325 (477)
T PHA02878 316 IGRILISNIC 325 (477)
T ss_pred hHHHHHHHHH
Confidence 7777776543
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=234.61 Aligned_cols=246 Identities=21% Similarity=0.318 Sum_probs=191.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+..++.+++++. .+..+++....++..++.++||+||||||||++|+++|++++. +++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-------~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-------YFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEEe
Confidence 468899999999999998854 4445555555566678889999999999999999999998865 789999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.+++.|+++..++.+|+.+. ++||||||+|.+.++++...++...+++++|++.|++ +.++||++|+..
T Consensus 245 ~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~ 324 (733)
T TIGR01243 245 GPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRP 324 (733)
T ss_pred cHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCCh
Confidence 999999999999999999998764 4899999999999988765566667888999999874 567777775543
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
..+ +|++++ ||+..+.|+.|+.++|.+|++.+.... .+..+.+.+.++..+.++ .
T Consensus 325 --~~l---d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~---------~l~~d~~l~~la~~t~G~---------~ 381 (733)
T TIGR01243 325 --DAL---DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM---------PLAEDVDLDKLAEVTHGF---------V 381 (733)
T ss_pred --hhc---CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC---------CCccccCHHHHHHhCCCC---------C
Confidence 223 888876 999999999999999999999876643 333455556666665544 4
Q ss_pred cchhHHHHHHHHHHhhhhhcC-CCC-------Ch--hhhhcccHHHHHHHHHHHHhcC
Q 011578 434 GGLVDPMLVNARENLDLRLSF-DCL-------DT--DELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~-~~~-------~~--~~~~~i~~~d~~~al~~~~~~~ 481 (482)
++++..++..|...+..|... ... .. .....++.+||..|++.++|..
T Consensus 382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 677888888888777666532 111 00 1234689999999999998864
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=232.51 Aligned_cols=174 Identities=21% Similarity=0.199 Sum_probs=148.1
Q ss_pred CCCCchHhHHHHH--cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc--HHHHHHHHcCCCCCCcccccCcCCC
Q 011578 10 RSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 10 ~~~~~t~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
+..|.||||.|+. .++.+.++.|+ +.|.++|..+.. |+||||+|+..|+ .++|++|++ .|+++|.+|..|
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~~-G~TPLH~Aa~~g~~~~eIVklLLe----~GADVN~kD~~G 247 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNNH-LITPLHTYLITGNVCASVIKKIIE----LGGDMDMKCVNG 247 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHcCCCCHHHHHHHHH----cCCCCCCCCCCC
Confidence 5679999999864 46789999888 557889999886 9999999999995 599999999 688999999999
Q ss_pred ChHHHHH-------------------------------------HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhh
Q 011578 86 ETPLHMA-------------------------------------AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128 (482)
Q Consensus 86 ~tpLh~A-------------------------------------~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~ 128 (482)
+||||+| +..|+.+++++|+++|++++.+|.+|+||||+|+..
T Consensus 248 ~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~ 327 (764)
T PHA02716 248 MSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR 327 (764)
T ss_pred CCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH
Confidence 9999975 445788999999999999999999999999997622
Q ss_pred ccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc-------------CCCChHHHHHHHhhhHHHHHHhhHhhh
Q 011578 129 SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN-------------GPGSAKLRELLLWHSEEQRKRRALEAC 191 (482)
Q Consensus 129 ~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~-------------~~~~~~~~~lL~~~~~~~~~~~~~~~~ 191 (482)
..++.+++++|+++|++++.+|..|+||||+++. ..++.+++++|+++|++++.+.....+
T Consensus 328 --~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~T 401 (764)
T PHA02716 328 --HNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYT 401 (764)
T ss_pred --hCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCC
Confidence 2457899999999999999999999999976643 236789999999999988766544333
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-25 Score=222.58 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=137.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc--HHHHHHHHcCCCCCCccccc-CcC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEA-QNM 83 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~-~~~ 83 (482)
...+..|.||||+||..|+.++|+.||. .+.++|.++.. |+||||+|+..++ .+++++|++ .|++++. .|.
T Consensus 66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~d~~-g~TpLh~A~~~~~~~~e~v~lLl~----~Gadin~~~d~ 139 (446)
T PHA02946 66 NETDDDGNYPLHIASKINNNRIVAMLLT-HGADPNACDKQ-HKTPLYYLSGTDDEVIERINLLVQ----YGAKINNSVDE 139 (446)
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCC-CCCHHHHHHHcCCchHHHHHHHHH----cCCCcccccCC
Confidence 3456779999999999999999998885 57888888876 9999999987664 789999998 5677774 688
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 84 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
.|.|||| ||..|+.+++++|++.|++++.+|..|+||||+|+.. ..++.+++++|+++|++++.+|.+|+||||+|+
T Consensus 140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~--~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa 216 (446)
T PHA02946 140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS--DNPKASTISWMMKLGISPSKPDHDGNTPLHIVC 216 (446)
T ss_pred CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHh--cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 8999997 6667889999999999999999999999999988732 345578899999999999999999999997777
Q ss_pred cCC-CChHHHHHHHhhhHHHHHHh
Q 011578 164 NGP-GSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 164 ~~~-~~~~~~~lL~~~~~~~~~~~ 186 (482)
..+ +..+++++|.. +++.+.+.
T Consensus 217 ~~~~~~~~iv~lLl~-gadin~~d 239 (446)
T PHA02946 217 SKTVKNVDIINLLLP-STDVNKQN 239 (446)
T ss_pred HcCCCcHHHHHHHHc-CCCCCCCC
Confidence 654 46677777775 66655444
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-25 Score=223.67 Aligned_cols=167 Identities=29% Similarity=0.449 Sum_probs=149.2
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+|+..|+.+.|+.|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .|++++..|..|.|
T Consensus 119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~----~g~~~n~~~~~g~t 192 (434)
T PHA02874 119 IKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDN-GCYPIHIAIKHNFFDIIKLLLE----KGAYANVKDNNGES 192 (434)
T ss_pred CCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 345679999999999999999999885 57778888876 9999999999999999999999 57888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.++..|+||||+|+ ..+. +.+.+|+ .|++++.+|..|+||||+|+..++
T Consensus 193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~----~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~ 266 (434)
T PHA02874 193 PLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI----IHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPC 266 (434)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH----HCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCC
Confidence 999999999999999999999999999999999999999 5443 5667766 689999999999999988887777
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
..+++++|+.+|++.+.+.
T Consensus 267 ~~~iv~~Ll~~gad~n~~d 285 (434)
T PHA02874 267 DIDIIDILLYHKADISIKD 285 (434)
T ss_pred cHHHHHHHHHCcCCCCCCC
Confidence 8899999999998876554
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=226.55 Aligned_cols=237 Identities=20% Similarity=0.296 Sum_probs=185.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
.....|+++.|.+..++++.+.......+...... +...+.+++|+||||||||++|++++++++. +|+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~----~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------~f~ 214 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL----GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFF 214 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhc----CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------CEE
Confidence 45567889999999999999987765544443332 3345678999999999999999999998876 899
Q ss_pred EeecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEE
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVI 349 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi 349 (482)
.++++++...++|.+...++++|..+. ++||||||+|.+...++.+ ++....+++++||..||+ ..+++|
T Consensus 215 ~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 215 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred EEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 999999999999999999999998764 5899999999999877642 344566889999999985 346777
Q ss_pred EecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHh
Q 011578 350 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 427 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 427 (482)
+||+... .+ +|++++ |||+.|.|+.|+.++|.+|++.++++.. +..+++...++..+.
T Consensus 295 aaTN~p~--~l---D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~---------l~~~~d~~~la~~t~------ 354 (644)
T PRK10733 295 AATNRPD--VL---DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---------LAPDIDAAIIARGTP------ 354 (644)
T ss_pred EecCChh--hc---CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC---------CCCcCCHHHHHhhCC------
Confidence 7755433 23 888886 9999999999999999999999998653 344555555444443
Q ss_pred hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 428 QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 428 ~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+++++.+++.+|...+..+ ....|+.+||++|+.++.+
T Consensus 355 ---G~sgadl~~l~~eAa~~a~r~---------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 355 ---GFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHc---------CCCcccHHHHHHHHHHHhc
Confidence 556899999999998876322 3357999999999987743
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-25 Score=205.45 Aligned_cols=156 Identities=31% Similarity=0.372 Sum_probs=143.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
.-.|.+||..|+..||+++|+.|+..+ .++|..... ..|||-.||..|++++|++|++ .++|++..|..|.|.|
T Consensus 81 ~IegappLWaAsaAGHl~vVk~L~~~g-a~VN~tT~T-NStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcL 154 (615)
T KOG0508|consen 81 TIEGAPPLWAASAAGHLEVVKLLLRRG-ASVNDTTRT-NSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCL 154 (615)
T ss_pred ccCCCchhhHHhccCcHHHHHHHHHhc-Ccccccccc-CCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeE
Confidence 456889999999999999999988664 888887764 6799999999999999999999 6889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+||..|+.+++++|++.|+|+|.++..|+|+||.++ ..|+.+++++|+++|+.+. +|..|.||| .+|+..++.
T Consensus 155 mIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca----EsG~vdivq~Ll~~ga~i~-~d~~GmtPL-~~Aa~tG~~ 228 (615)
T KOG0508|consen 155 MIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA----ESGSVDIVQLLLKHGAKID-VDGHGMTPL-LLAAVTGHT 228 (615)
T ss_pred EeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh----hcccHHHHHHHHhCCceee-ecCCCCchH-HHHhhhcch
Confidence 9999999999999999999999999999999999999 8999999999999999887 566799999 778778888
Q ss_pred HHHHHHHh
Q 011578 170 KLRELLLW 177 (482)
Q Consensus 170 ~~~~lL~~ 177 (482)
.++++|..
T Consensus 229 ~iVe~L~~ 236 (615)
T KOG0508|consen 229 DIVERLLQ 236 (615)
T ss_pred HHHHHHhc
Confidence 88888886
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=222.56 Aligned_cols=173 Identities=27% Similarity=0.329 Sum_probs=147.3
Q ss_pred cccc-ccCCCCCchHhHHHH--HcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC--cHHHHHHHHcCCCCCCcc
Q 011578 3 KNQD-RRSRSAKPATIHGCA--QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVE 77 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~ 77 (482)
.|.+ ...+..|.||||+|+ ..|+.+.++.|+. .+.+++..+.. |.||||+|+..| +.+++++|++ .|++
T Consensus 95 ~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~iv~~Ll~----~g~d 168 (480)
T PHA03100 95 YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NGANVNIKNSD-GENLLHLYLESNKIDLKILKLLID----KGVD 168 (480)
T ss_pred CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHH-cCCCCCccCCC-CCcHHHHHHHcCCChHHHHHHHHH----CCCC
Confidence 3444 344566899999999 9999999998884 56778888776 999999999999 9999999999 5788
Q ss_pred cccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCC------CcceeeehhhccCCCh--HHHHHHHhhCCCCcc
Q 011578 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG------MTPLHLSVWYSIRSED--YATVKTLLEYNADCS 149 (482)
Q Consensus 78 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g------~tpLh~A~~~~~~~~~--~~~v~~Ll~~gad~~ 149 (482)
++.+|..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+ ..++ .+++++|+++|++++
T Consensus 169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~----~~~~~~~~iv~~Ll~~g~din 244 (480)
T PHA03100 169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAA----CYNEITLEVVNYLLSYGVPIN 244 (480)
T ss_pred cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHH----HhCcCcHHHHHHHHHcCCCCC
Confidence 88899999999999999999999999999999999988888 89999999 7777 999999999999999
Q ss_pred ccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 150 ~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.+|..|.||||+|+ ..++.+++++|++.|++++.+.
T Consensus 245 ~~d~~g~TpL~~A~-~~~~~~iv~~Ll~~gad~n~~d 280 (480)
T PHA03100 245 IKDVYGFTPLHYAV-YNNNPEFVKYLLDLGANPNLVN 280 (480)
T ss_pred CCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCccC
Confidence 99999999995554 4567888889998888766554
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=224.07 Aligned_cols=174 Identities=19% Similarity=0.179 Sum_probs=144.8
Q ss_pred cccc-ccCCCCCchHhHHHHHcCC--HHHHHHHHhhCCCCccCCCCCCCChHHHHH------------------------
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVS------------------------ 55 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A------------------------ 55 (482)
.|.+ ..++..|.||||+|+..|+ .+.|+.|| +.|+++|..+.. |+||||+|
T Consensus 201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~~-G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~ 278 (764)
T PHA02716 201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCVN-GMSPIMTYIINIDNINPEITNIYIESLDGNKV 278 (764)
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHhhhccCHHHHHHHHHhcccccc
Confidence 3444 3456789999999999995 48899888 557889999886 99999975
Q ss_pred -------------HhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH--cCCHHHHHHHHhCCCCccccccCCCc
Q 011578 56 -------------AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGMT 120 (482)
Q Consensus 56 -------------~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~t 120 (482)
+..|+.+++++|++ .|++++.+|..|+||||+|+. .++.+++++|+++|++++.+|..|+|
T Consensus 279 ~~~~~~L~~~i~AA~~g~leiVklLLe----~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~T 354 (764)
T PHA02716 279 KNIPMILHSYITLARNIDISVVYSFLQ----PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNT 354 (764)
T ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHh----CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCC
Confidence 34577889999998 688899999999999999864 46889999999999999999999999
Q ss_pred ceeeehhhc----------cCCChHHHHHHHhhCCCCccccCCCCCChhhh---hhcCCCChHHHHHHHhhhHHH
Q 011578 121 PLHLSVWYS----------IRSEDYATVKTLLEYNADCSAKDNEGKTPLDH---LSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 121 pLh~A~~~~----------~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~---~a~~~~~~~~~~lL~~~~~~~ 182 (482)
|||+|+... ...++.+++++|+++|+|++.+|..|+||||. ++...+..+++++|+..++..
T Consensus 355 PLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~ 429 (764)
T PHA02716 355 VLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN 429 (764)
T ss_pred HHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh
Confidence 999986210 01368999999999999999999999999973 344567789999999877543
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=221.48 Aligned_cols=172 Identities=26% Similarity=0.292 Sum_probs=140.0
Q ss_pred cccccc-CCCCCchHhHH-----HHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHH--hCCcHHHHHHHHcCCCCC
Q 011578 3 KNQDRR-SRSAKPATIHG-----CAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSA--GYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 3 ~~~~~~-~~~~~~t~l~~-----a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~ 74 (482)
.|.+.. ....+.||||. |+..|+.+.++.|+. .+.+++..+.. |.||||+|+ ..|+.+++++|++ .
T Consensus 57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~-~ga~i~~~d~~-g~tpL~~A~~~~~~~~~iv~~Ll~----~ 130 (480)
T PHA03100 57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE-YGANVNAPDNN-GITPLLYAISKKSNSYSIVEYLLD----N 130 (480)
T ss_pred cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHH-CCCCCCCCCCC-CCchhhHHHhcccChHHHHHHHHH----c
Confidence 454443 34567889999 999999999888885 45566777776 889999999 8899999999998 5
Q ss_pred CcccccCcCCCChHHHHHHHcC--CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 75 KVELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 75 ~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
|++++..+..|.||||+|+..| +.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++..+
T Consensus 131 g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~----~~~~~~iv~~Ll~~ga~~~~~~ 206 (480)
T PHA03100 131 GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV----EKGNIDVIKFLLDNGADINAGD 206 (480)
T ss_pred CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH----HhCCHHHHHHHHHcCCCccCCC
Confidence 7778888888999999999988 889999999999999888888999999998 7788899999999999998888
Q ss_pred CCC------CChhhhhhcCCCC--hHHHHHHHhhhHHHHHH
Q 011578 153 NEG------KTPLDHLSNGPGS--AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 153 ~~g------~tpl~~~a~~~~~--~~~~~lL~~~~~~~~~~ 185 (482)
..| .||||.++. .+. .+++++|+.+|++.+.+
T Consensus 207 ~~~~~~~~~~t~l~~a~~-~~~~~~~iv~~Ll~~g~din~~ 246 (480)
T PHA03100 207 IETLLFTIFETPLHIAAC-YNEITLEVVNYLLSYGVPINIK 246 (480)
T ss_pred CCCCcHHHHHhHHHHHHH-hCcCcHHHHHHHHHcCCCCCCC
Confidence 888 888855554 455 77888888887765544
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=207.70 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=143.5
Q ss_pred CCCCCchHhHHHHH--cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcc--cccCcCC
Q 011578 9 SRSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE--LEAQNMY 84 (482)
Q Consensus 9 ~~~~~~t~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~~ 84 (482)
....++|+||.++. .|+.+.|+.|+ .+|++++..+ +.||||+|+..|+.+++++|+++|++.... .+..+..
T Consensus 112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~~---~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~ 187 (437)
T PHA02795 112 NCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKIE---CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII 187 (437)
T ss_pred ccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCCC---CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence 56679999999999 99999999998 5677788743 689999999999999999999975421111 1112245
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
+.||+|.|+..++.+++++|+++|+++|.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa----~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~ 263 (437)
T PHA02795 188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI----YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVD 263 (437)
T ss_pred ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 889999999999999999999999999999999999999999 8899999999999999999999999999977776
Q ss_pred CCC-------ChHHHHHHHhhhHHHHH
Q 011578 165 GPG-------SAKLRELLLWHSEEQRK 184 (482)
Q Consensus 165 ~~~-------~~~~~~lL~~~~~~~~~ 184 (482)
.+. +.+++++|+++|++...
T Consensus 264 ~g~~~~~~~~~~eIvelLL~~gadI~~ 290 (437)
T PHA02795 264 RGSVIARRETHLKILEILLREPLSIDC 290 (437)
T ss_pred cCCcccccccHHHHHHHHHhCCCCCCc
Confidence 653 46899999998876543
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-24 Score=212.47 Aligned_cols=166 Identities=28% Similarity=0.392 Sum_probs=145.1
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCC--------------ccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSL--------------LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~--------------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 74 (482)
.++.|.+|||.|+..|+++.++.+|..+... +|..|.. |.||||+||..|+.++|..|+. .
T Consensus 221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d-g~tpLH~a~r~G~~~svd~Ll~----~ 295 (929)
T KOG0510|consen 221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND-GCTPLHYAARQGGPESVDNLLG----F 295 (929)
T ss_pred ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc-CCchHHHHHHcCChhHHHHHHH----c
Confidence 3567899999999999999999999754332 3444554 9999999999999999999999 6
Q ss_pred CcccccCcCCCChHHHHHHHcCCHHHHHHHHh-CC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcc---
Q 011578 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS--- 149 (482)
Q Consensus 75 ~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~--- 149 (482)
|++++.++.++.||||.||..|++++|+-|++ .| ...|..|-.|+||||+|+ +.||..++++|+..||+..
T Consensus 296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa----~~gH~~v~qlLl~~GA~~~~~~ 371 (929)
T KOG0510|consen 296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA----KSGHDRVVQLLLNKGALFLNMS 371 (929)
T ss_pred CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh----hcCHHHHHHHHHhcChhhhccc
Confidence 89999999999999999999999999999999 55 568899999999999999 9999999999999999887
Q ss_pred ccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHH
Q 011578 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 184 (482)
Q Consensus 150 ~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~ 184 (482)
..|.+|.||| |.|+..++..++.+|+.+|++...
T Consensus 372 e~D~dg~TaL-H~Aa~~g~~~av~~Li~~Ga~I~~ 405 (929)
T KOG0510|consen 372 EADSDGNTAL-HLAAKYGNTSAVQKLISHGADIGV 405 (929)
T ss_pred ccccCCchhh-hHHHHhccHHHHHHHHHcCCceee
Confidence 4599999999 455557788889999999998743
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=217.42 Aligned_cols=180 Identities=21% Similarity=0.185 Sum_probs=147.7
Q ss_pred Ccccccc-CCCCCchHhHHHHHc-----CCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC---cHHHHHHHHcCCC
Q 011578 2 QKNQDRR-SRSAKPATIHGCAQS-----GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPG 72 (482)
Q Consensus 2 ~~~~~~~-~~~~~~t~l~~a~~~-----g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g---~~~~v~~Ll~~~~ 72 (482)
+.|.+.. .+..|.||||.|+.. +..++++.|+ +.|.++|..+.. |+||||+|+..+ +.+++++|++
T Consensus 59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll-~~GadiN~~d~~-G~TpLh~a~~~~~~~~~~iv~~Ll~--- 133 (489)
T PHA02798 59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILI-ENGADINKKNSD-GETPLYCLLSNGYINNLEILLFMIE--- 133 (489)
T ss_pred HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHH-HCCCCCCCCCCC-cCcHHHHHHHcCCcChHHHHHHHHH---
Confidence 3455543 567899999998864 6788888888 567889999986 999999999875 7899999999
Q ss_pred CCCcccccCcCCCChHHHHHHHcCC---HHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCC-
Q 011578 73 NDKVELEAQNMYGETPLHMAAKNGC---NEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD- 147 (482)
Q Consensus 73 ~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad- 147 (482)
.|++++.+|..|.||||+|+..++ .+++++|+++|++++..+ ..|.||||.++.++...++.+++++|+++|++
T Consensus 134 -~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i 212 (489)
T PHA02798 134 -NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII 212 (489)
T ss_pred -cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc
Confidence 688999999999999999999988 999999999999999875 57899999887554455678888888877764
Q ss_pred --------------------------------------ccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 148 --------------------------------------CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 148 --------------------------------------~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
+|.+|..|+||||+|+ ..++.+++++|++.|++++.....
T Consensus 213 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~-~~~~~~~v~~LL~~GAdin~~d~~ 290 (489)
T PHA02798 213 NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSV-SHNNRKIFEYLLQLGGDINIITEL 290 (489)
T ss_pred ccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHH-HcCcHHHHHHHHHcCCcccccCCC
Confidence 4456778999995554 567888999999999998766533
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=184.47 Aligned_cols=185 Identities=24% Similarity=0.327 Sum_probs=126.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++||+.++..+.-++...+ .......|++||||||+||||+|+.||++++. +|..++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~-----------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------~~~~~s 82 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAK-----------KRGEALDHMLFYGPPGLGKTTLARIIANELGV-------NFKITS 82 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHH-----------CTTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEE
T ss_pred CCHHHccCcHHHHhhhHHHHHHHH-----------hcCCCcceEEEECCCccchhHHHHHHHhccCC-------CeEecc
Confidence 568899999999999887765543 11235679999999999999999999999987 677666
Q ss_pred cccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc----------------
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------- 345 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------- 345 (482)
++.+.. ...+..++.. .++.|||||||+++.+..| +.|+..|+++.
T Consensus 83 g~~i~k------~~dl~~il~~l~~~~ILFIDEIHRlnk~~q-----------e~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 83 GPAIEK------AGDLAAILTNLKEGDILFIDEIHRLNKAQQ-----------EILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp CCC--S------CHHHHHHHHT--TT-EEEECTCCC--HHHH-----------HHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred chhhhh------HHHHHHHHHhcCCCcEEEEechhhccHHHH-----------HHHHHHhccCeEEEEeccccccceeec
Confidence 544321 1234444544 3568999999999998655 88999999754
Q ss_pred ----EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 346 ----VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 346 ----~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
+++|+|||...+. .++|++||....++..|+.+|+.+|+++..... ..+++.++..+++.
T Consensus 146 ~l~~FTligATTr~g~l-----s~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-----------~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLL-----SSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-----------NIEIDEDAAEEIAR 209 (233)
T ss_dssp E----EEEEEESSGCCT-----SHCCCTTSSEEEE----THHHHHHHHHHCCHCT-----------T-EE-HHHHHHHHH
T ss_pred cCCCceEeeeecccccc-----chhHHhhcceecchhcCCHHHHHHHHHHHHHHh-----------CCCcCHHHHHHHHH
Confidence 4677777766553 789999999999999999999999999865543 35678888888888
Q ss_pred HHhhHhhccccCcchhHHHHHHHH
Q 011578 422 KETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
++ -|..|-..++++++.
T Consensus 210 rs-------rGtPRiAnrll~rvr 226 (233)
T PF05496_consen 210 RS-------RGTPRIANRLLRRVR 226 (233)
T ss_dssp CT-------TTSHHHHHHHHHHHC
T ss_pred hc-------CCChHHHHHHHHHHH
Confidence 65 456677777776653
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=212.96 Aligned_cols=169 Identities=19% Similarity=0.169 Sum_probs=104.2
Q ss_pred CCCCchHhHHHHHcC-CHHHHHHHHhhCCCCccCCCCCCCChHHHHHH--hCCcHHHHHHHHcCCCC-------------
Q 011578 10 RSAKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSA--GYNKAEIVKSLLEWPGN------------- 73 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~------------- 73 (482)
+..|.||||+|+..| +.+.++.|+ +.+.++|..+.. |+||||+|+ ..++.+++++|+++|++
T Consensus 80 ~~~g~TpLh~A~~~~~~~~iv~lLl-~~ga~in~~~~~-g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~ 157 (471)
T PHA03095 80 ERCGFTPLHLYLYNATTLDVIKLLI-KAGADVNAKDKV-GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA 157 (471)
T ss_pred CCCCCCHHHHHHHcCCcHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 346777777777777 366666555 445666666665 777777777 44566677777663221
Q ss_pred ------------------CCcccccCcCCCChHHHHHHHc--CCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCC
Q 011578 74 ------------------DKVELEAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE 133 (482)
Q Consensus 74 ------------------~~~~~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~ 133 (482)
.|++++..|..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+ ..+
T Consensus 158 ~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa----~~~ 233 (471)
T PHA03095 158 VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA----TGS 233 (471)
T ss_pred HHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH----hcC
Confidence 1222333344444444444432 4456667777777777777777777777777 434
Q ss_pred h--HHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 134 D--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 134 ~--~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+ ..++..|++.|+++|.+|..|+||||+| +..++.+++++|++.|++++..
T Consensus 234 ~~~~~~v~~ll~~g~din~~d~~g~TpLh~A-~~~~~~~~v~~LL~~gad~n~~ 286 (471)
T PHA03095 234 SCKRSLVLPLLIAGISINARNRYGQTPLHYA-AVFNNPRACRRLIALGADINAV 286 (471)
T ss_pred CchHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCccc
Confidence 3 3566677777777777777777777443 3455666667777777766544
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=224.96 Aligned_cols=171 Identities=25% Similarity=0.305 Sum_probs=91.9
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC-cHHHHHHHHcCCCC----------------
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGN---------------- 73 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~---------------- 73 (482)
..|.||||+|+..|+...+..+|...+.+++..+.. |.||||+|+..| +.+++++|+..|++
T Consensus 271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~-g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~ 349 (682)
T PHA02876 271 DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIK-GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS 349 (682)
T ss_pred CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHH
Confidence 345556666665555533222333444555555543 555555555555 34555555542110
Q ss_pred --------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHH
Q 011578 74 --------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139 (482)
Q Consensus 74 --------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~ 139 (482)
.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. ..+...+++
T Consensus 350 ~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~---~~~~~~~vk 426 (682)
T PHA02876 350 TLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALC---GTNPYMSVK 426 (682)
T ss_pred HhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHH---cCCHHHHHH
Confidence 345555555555666666666666666666666666665555555666665551 122344556
Q ss_pred HHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 140 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 140 ~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+|+++|+++|.+|..|+||||+|+..+...+++++|+++|++++..
T Consensus 427 ~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~ 472 (682)
T PHA02876 427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI 472 (682)
T ss_pred HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence 6666666666666666666655554444556666666666654443
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=209.57 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=142.2
Q ss_pred cccc-ccCCCCCchHhHHHHHcCC--HHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccc
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (482)
.|.+ ...+..|.||||+|+..++ .+.++.|+ +.+.++|...+..|.|||| ||..|+.+++++|++ .|++++
T Consensus 94 ~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~----~gad~~ 167 (446)
T PHA02946 94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS----IGFEAR 167 (446)
T ss_pred CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh----cccccc
Confidence 4444 3456789999999998764 78888777 5577777543334999998 667799999999999 578899
Q ss_pred cCcCCCChHHHHHHHcCC--HHHHHHHHhCCCCccccccCCCcceeeehhhccCCC--hHHHHHHHhhCCCCccccCCCC
Q 011578 80 AQNMYGETPLHMAAKNGC--NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE--DYATVKTLLEYNADCSAKDNEG 155 (482)
Q Consensus 80 ~~~~~g~tpLh~A~~~g~--~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~--~~~~v~~Ll~~gad~~~~d~~g 155 (482)
.+|..|+||||+|+..++ .+++++|+++|++++.+|.+|+||||+|+ ..+ +.+++++|++ |+++|.+|..|
T Consensus 168 ~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa----~~~~~~~~iv~lLl~-gadin~~d~~G 242 (446)
T PHA02946 168 IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC----SKTVKNVDIINLLLP-STDVNKQNKFG 242 (446)
T ss_pred ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence 999999999999987554 68999999999999999999999999999 544 7899999995 99999999999
Q ss_pred CChhhhhhcCCCChHHHHHHHhhhHHHH
Q 011578 156 KTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 156 ~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (482)
+||||+|+..++..+++++|+.+|+...
T Consensus 243 ~TpLh~A~~~~~~~~~~~~Ll~~g~~~~ 270 (446)
T PHA02946 243 DSPLTLLIKTLSPAHLINKLLSTSNVIT 270 (446)
T ss_pred CCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence 9999877776666788889998887544
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=215.82 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=117.6
Q ss_pred CccccccCCCCCchHhHHHHHcC------CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhC---CcHHHHHHHHcCCC
Q 011578 2 QKNQDRRSRSAKPATIHGCAQSG------DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPG 72 (482)
Q Consensus 2 ~~~~~~~~~~~~~t~l~~a~~~g------~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~ 72 (482)
+.|.|.+....+.||||.|+..+ +.++|+.|| +.|.++|..+.. |+||||+|+.. |+.+++++|++
T Consensus 58 ~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~d~~-g~tpL~~a~~~~~~~~~eiv~~Ll~--- 132 (494)
T PHA02989 58 DNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLL-KFGADINLKTFN-GVSPIVCFIYNSNINNCDMLRFLLS--- 132 (494)
T ss_pred HcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHH-HCCCCCCCCCCC-CCcHHHHHHHhcccCcHHHHHHHHH---
Confidence 34555555555677777776544 345666555 456667777765 77777766544 56777777777
Q ss_pred CCCccc-ccCcCCCChHHHHHHHc--CCHHHHHHHHhCCCCccc-cccCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 73 NDKVEL-EAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEA-KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 73 ~~~~~~-~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~-~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
.|+++ +.+|..|+||||+|+.. ++.+++++|+++|++++. .+..|.||||+|+..+...++.+++++|+++|+++
T Consensus 133 -~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v 211 (494)
T PHA02989 133 -KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI 211 (494)
T ss_pred -CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc
Confidence 46677 66777777777776643 567777777777777776 56677777777764433445777777777777665
Q ss_pred cc--------------------------------------cCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 149 SA--------------------------------------KDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 149 ~~--------------------------------------~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+. +|..|+||||+|+ ..++.+++++|++.|++++.+.
T Consensus 212 n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa-~~~~~~~v~~LL~~Gadin~~d 286 (494)
T PHA02989 212 ETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISA-KVDNYEAFNYLLKLGDDIYNVS 286 (494)
T ss_pred cccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHH-HhcCHHHHHHHHHcCCCccccC
Confidence 43 3445777874444 4566777777777777766554
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=217.52 Aligned_cols=175 Identities=18% Similarity=0.157 Sum_probs=130.3
Q ss_pred ccccCCCCCchHhHHHHHc---CCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHH----HHHHHHcCCC-----
Q 011578 5 QDRRSRSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE----IVKSLLEWPG----- 72 (482)
Q Consensus 5 ~~~~~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~----~v~~Ll~~~~----- 72 (482)
.....+..|.||||+||.. |+.+.|+.||. .|.+++..+.. |+||||+|+..|+.+ +++.|++.++
T Consensus 24 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~~-g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~ 101 (661)
T PHA02917 24 PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNWR-QLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN 101 (661)
T ss_pred cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCCC-CCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC
Confidence 3344577899999997655 88999999985 57788888776 999999998877632 3344443211
Q ss_pred ----------------------CCCcccccCcCCCChHHHHH--HHcCCHHHHHHHHhCCCCcccccc---CC-------
Q 011578 73 ----------------------NDKVELEAQNMYGETPLHMA--AKNGCNEAAKLLLAHGAFIEAKAN---NG------- 118 (482)
Q Consensus 73 ----------------------~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~ga~~~~~d~---~g------- 118 (482)
..|+++|.+|..|+||||+| +..|+.+++++|+++||++|..|. .|
T Consensus 102 ~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~ 181 (661)
T PHA02917 102 DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ 181 (661)
T ss_pred CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence 05788899999999999854 357899999999999999986553 34
Q ss_pred ----Ccceeeehhhc-------cCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC-hHHHHHHHhhhHHH
Q 011578 119 ----MTPLHLSVWYS-------IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS-AKLRELLLWHSEEQ 182 (482)
Q Consensus 119 ----~tpLh~A~~~~-------~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~-~~~~~lL~~~~~~~ 182 (482)
.||||+|+... ...++.+++++|+++|+|+|.+|.+|.||||+|+..++. .+++++|.+ |++.
T Consensus 182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~ 256 (661)
T PHA02917 182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN 256 (661)
T ss_pred ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence 59999987311 014578999999999999999999999999777665543 368888875 5443
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=213.64 Aligned_cols=171 Identities=22% Similarity=0.201 Sum_probs=143.7
Q ss_pred Cccccc-cCCCCCchHhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc---HHHHHHHHcCCCCC
Q 011578 2 QKNQDR-RSRSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGND 74 (482)
Q Consensus 2 ~~~~~~-~~~~~~~t~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~ 74 (482)
+.|.|. ..+..|.||||+|+..| +.+.++.|+ +.|.+++..+.. |.||||+|+..|+ .+++++|++ .
T Consensus 97 ~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~-g~tpL~~a~~~~~~~~~~vv~~Ll~----~ 170 (489)
T PHA02798 97 ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI-ENGADTTLLDKD-GFTMLQVYLQSNHHIDIEIIKLLLE----K 170 (489)
T ss_pred HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH-HcCCCccccCCC-CCcHHHHHHHcCCcchHHHHHHHHH----h
Confidence 345553 45568999999999986 678999888 557889999887 9999999999998 999999999 5
Q ss_pred CcccccCc-CCCChHHHHHHHc----CCHHHHHHHHhCCCC---------------------------------------
Q 011578 75 KVELEAQN-MYGETPLHMAAKN----GCNEAAKLLLAHGAF--------------------------------------- 110 (482)
Q Consensus 75 ~~~~~~~~-~~g~tpLh~A~~~----g~~~~v~~Ll~~ga~--------------------------------------- 110 (482)
|++++.++ ..|.||||.++.. ++.+++++|+++|++
T Consensus 171 gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~d 250 (489)
T PHA02798 171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYID 250 (489)
T ss_pred CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 78888875 5789999998764 478899999888764
Q ss_pred ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHH
Q 011578 111 IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 111 ~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (482)
+|.+|..|+||||+|+ ..|+.+++++|+++|||++.+|..|+|||| .|...++..++..|++++++.+
T Consensus 251 vN~~d~~G~TPL~~A~----~~~~~~~v~~LL~~GAdin~~d~~G~TpL~-~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 251 INQVDELGFNPLYYSV----SHNNRKIFEYLLQLGGDINIITELGNTCLF-TAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred CCCcCcCCccHHHHHH----HcCcHHHHHHHHHcCCcccccCCCCCcHHH-HHHHcCcHHHHHHHHccCCCHH
Confidence 4456778999999999 888999999999999999999999999995 4555778888888888877654
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=186.07 Aligned_cols=257 Identities=17% Similarity=0.242 Sum_probs=173.7
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH--cCCCCC
Q 011578 198 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM--VGILPT 275 (482)
Q Consensus 198 ~~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~--~~~~~~ 275 (482)
..++.-.|+.++=-..+|+++..+......-.... ....+ ..-..-+|++||||||||+++|++|+.+-. ...-..
T Consensus 134 a~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~-vntnl-It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~ 211 (423)
T KOG0744|consen 134 AAEFDGLWESLIYDSNLKERLLSYAASALLFSEKK-VNTNL-ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYK 211 (423)
T ss_pred chhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcC-CCCce-eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcccc
Confidence 34566778888888899999998765443222221 11111 113345889999999999999999998842 222334
Q ss_pred CCeEEeecccccccccccchhhHHHHHHhc------CC--cEEEEecccccccCCC----CCCChhHHHHHHHHHhhhcC
Q 011578 276 DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA------EG--GILFVDEAYRLIPMQK----ADDKDYGIEALEEIMSVMDG 343 (482)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a------~~--~vl~iDE~d~l~~~~~----~~~~~~~~~~~~~ll~~l~~ 343 (482)
+.++++++..+.++|++++++.+.++|.+- ++ -.++|||+++|+..|. .++...+.+++|++|++||.
T Consensus 212 ~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 212 GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 678999999999999999999999999764 33 4667899999988763 23455677999999999997
Q ss_pred ----CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH----H
Q 011578 344 ----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD----A 415 (482)
Q Consensus 344 ----~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~----~ 415 (482)
..+++.+| +|-.+.+ |-+|-+|-|.+..+++|+.+.+.+|++.++.++... |+-.....+.. .
T Consensus 292 lK~~~NvliL~T--SNl~~si---D~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~----gIi~~~~~s~~~~~~i 362 (423)
T KOG0744|consen 292 LKRYPNVLILAT--SNLTDSI---DVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISS----GIILFHQRSTGVKEFI 362 (423)
T ss_pred hccCCCEEEEec--cchHHHH---HHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhc----CeeeeeccchhhhHHh
Confidence 34444444 4444444 888999999999999999999999999999887542 33111111110 0
Q ss_pred HHHHHHHHhh-HhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 416 IAALIEKETT-EKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 416 l~~~~~~~~~-~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
...-+...+. .-...+..||.+|.+=-.|.... -+..+++.++|..|+-.
T Consensus 363 ~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y-----------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 363 KYQKALRNILIELSTVGLSGRTLRKLPLLAHAEY-----------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred HhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhc-----------cCCCccChHHHHHHHHH
Confidence 0111111111 11234567888887766665543 11247899999877654
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=214.24 Aligned_cols=172 Identities=23% Similarity=0.247 Sum_probs=147.6
Q ss_pred cCCCCCchHhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC-cHHHHHHHHcCCCCCCcccccCcC
Q 011578 8 RSRSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKVELEAQNM 83 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (482)
..+..|.||||+|+..| +.+.++.|+ +.|.++|..+.. |+||||+|+..| +.+++++|++ .|++++.+|.
T Consensus 42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~~-g~TpLh~A~~~~~~~~iv~lLl~----~ga~in~~~~ 115 (471)
T PHA03095 42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPERC-GFTPLHLYLYNATTLDVIKLLIK----AGADVNAKDK 115 (471)
T ss_pred cCCCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcCCcHHHHHHHHH----cCCCCCCCCC
Confidence 34566899999999998 899999888 567889998885 999999999999 5999999999 5788999999
Q ss_pred CCChHHHHHH--HcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhh
Q 011578 84 YGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (482)
Q Consensus 84 ~g~tpLh~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~ 161 (482)
.|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+.. ..++.+++++|+++|++++..|..|+||||+
T Consensus 116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~--~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~ 193 (471)
T PHA03095 116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS--RNANVELLRLLIDAGADVYAVDDRFRSLLHH 193 (471)
T ss_pred CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 9999999999 56688999999999999999999999999998833 2347899999999999999999999999977
Q ss_pred hhcC-CCChHHHHHHHhhhHHHHHHhh
Q 011578 162 LSNG-PGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 162 ~a~~-~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
++.. .+...++++|+.+|++++.+..
T Consensus 194 ~~~~~~~~~~i~~~Ll~~g~~~~~~d~ 220 (471)
T PHA03095 194 HLQSFKPRARIVRELIRAGCDPAATDM 220 (471)
T ss_pred HHHHCCCcHHHHHHHHHcCCCCcccCC
Confidence 7653 5677888899989888766543
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=169.94 Aligned_cols=143 Identities=33% Similarity=0.346 Sum_probs=128.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
+-.-.+.+|+..+.+..|+.||+..+..+|.+|.+ |+||||-|+++||.+||+.|+. .|++++.+...|+||||-
T Consensus 62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D-~YTpLHRAaYn~h~div~~ll~----~gAn~~a~T~~GWTPLhS 136 (228)
T KOG0512|consen 62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDED-EYTPLHRAAYNGHLDIVHELLL----SGANKEAKTNEGWTPLHS 136 (228)
T ss_pred CHHHHHHHHHhhccHHHHHHHHHhccccccccccc-cccHHHHHHhcCchHHHHHHHH----ccCCcccccccCccchhh
Confidence 33455889999999999999999999999999997 9999999999999999999998 688899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh-hCCCCccccCCCCCChhhhh
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpl~~~ 162 (482)
||.-.+.+|+..|+++|+|||+..+..+||||+|+- ..+....+.+|+ ..+.++..++..+.||+++|
T Consensus 137 AckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~---~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iA 205 (228)
T KOG0512|consen 137 ACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG---NRNSRDTLELLLHDRYIHPGLKNNLEETAFDIA 205 (228)
T ss_pred hhcccchhHHHHHHhccCcccccccccchhhHHhhc---ccchHHHHHHHhhccccChhhhcCccchHHHHH
Confidence 999999999999999999999999999999999993 345566777776 56899999999999999444
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=226.17 Aligned_cols=199 Identities=11% Similarity=0.128 Sum_probs=147.3
Q ss_pred CCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----------cc--------------
Q 011578 237 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----------VG-------------- 292 (482)
Q Consensus 237 ~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g-------------- 292 (482)
.++..+|.++||+||||||||++||++|.+++. ||+.+++++++..+ +|
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-------ceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 356678999999999999999999999999887 99999999887654 22
Q ss_pred -----------------cchh--hHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------
Q 011578 293 -----------------HTGP--KTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------- 343 (482)
Q Consensus 293 -----------------~~~~--~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------- 343 (482)
.++. .++.+|+.|+ +|||||||||.+..+.. . ...+++|+..|++
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---~---~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---N---YLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---c---eehHHHHHHHhccccccCCC
Confidence 2222 3778888774 59999999999987522 1 1236888888874
Q ss_pred CcEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCc-ccHHHHHHHH
Q 011578 344 GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS-CSMDAIAALI 420 (482)
Q Consensus 344 ~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 420 (482)
..|+||+||+.... + ||||++ |||+.|.++.|+..+|.+++...+... ++.+... ++.+.++..+
T Consensus 1771 ~~VIVIAATNRPD~--L---DPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-------g~~L~~~~vdl~~LA~~T 1838 (2281)
T CHL00206 1771 RNILVIASTHIPQK--V---DPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-------GFHLEKKMFHTNGFGSIT 1838 (2281)
T ss_pred CCEEEEEeCCCccc--C---CHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-------CCCCCcccccHHHHHHhC
Confidence 24778888665443 2 999998 999999999999999999887543221 3333322 3455555555
Q ss_pred HHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 421 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
. +.+||+|.+++.+|...+..+- ...|+.+||..|+.++.
T Consensus 1839 ~---------GfSGADLanLvNEAaliAirq~---------ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1839 M---------GSNARDLVALTNEALSISITQK---------KSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred C---------CCCHHHHHHHHHHHHHHHHHcC---------CCccCHHHHHHHHHHHH
Confidence 4 4568999999999988774432 24688899999988774
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=213.18 Aligned_cols=168 Identities=22% Similarity=0.285 Sum_probs=137.2
Q ss_pred Ccccccc-CCCCCchHhHHHHHc---CCHHHHHHHHhhCCCCc-cCCCCCCCChHHHHHHhC--CcHHHHHHHHcCCCCC
Q 011578 2 QKNQDRR-SRSAKPATIHGCAQS---GDLLAFQRLLRENPSLL-NERNPVMAQTPLHVSAGY--NKAEIVKSLLEWPGND 74 (482)
Q Consensus 2 ~~~~~~~-~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~~-~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~ 74 (482)
+.|+|.+ .+..|.||||.|+.. |+.+.|+.||+ .|.++ +..+.. |+||||+|+.. ++.++|++|++ .
T Consensus 96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~~-g~tpLh~a~~~~~~~~~iv~~Ll~----~ 169 (494)
T PHA02989 96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNSR-GYNLLHMYLESFSVKKDVIKILLS----F 169 (494)
T ss_pred HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCCC-CCCHHHHHHHhccCCHHHHHHHHH----c
Confidence 4555543 456799999988765 67899998885 57778 677765 99999998754 68999999999 5
Q ss_pred Cccccc-CcCCCChHHHHHHHcC----CHHHHHHHHhCCCCccc------------------------------------
Q 011578 75 KVELEA-QNMYGETPLHMAAKNG----CNEAAKLLLAHGAFIEA------------------------------------ 113 (482)
Q Consensus 75 ~~~~~~-~~~~g~tpLh~A~~~g----~~~~v~~Ll~~ga~~~~------------------------------------ 113 (482)
|++++. .+..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv 249 (494)
T PHA02989 170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI 249 (494)
T ss_pred CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC
Confidence 777887 6789999999998764 88999999999887654
Q ss_pred --cccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhH
Q 011578 114 --KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 114 --~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
+|..|+||||+|+ ..++.+++++|+++|+|++.+|..|+||||+|+ ..++.+++++|++.+.
T Consensus 250 n~~d~~G~TpL~~Aa----~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~-~~~~~~iv~~LL~~~p 313 (494)
T PHA02989 250 NKKDKKGFNPLLISA----KVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI-KHGNIDMLNRILQLKP 313 (494)
T ss_pred CCCCCCCCCHHHHHH----HhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH-HcCCHHHHHHHHhcCC
Confidence 4556999999999 788999999999999999999999999995554 5677788888886653
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=220.89 Aligned_cols=164 Identities=27% Similarity=0.306 Sum_probs=144.1
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcH-HHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA-EIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
.+.++|+.|+..++.+.++.++. .+.+++..+.. |+||||+|+..|+. +++++|++ .|++++.+|..|.||||
T Consensus 239 ~~~~~L~~ai~~~~~~~~~~Ll~-~g~~vn~~d~~-g~TpLh~Aa~~~~~~~iv~lLl~----~gadin~~d~~g~TpLh 312 (682)
T PHA02876 239 KNDLSLLKAIRNEDLETSLLLYD-AGFSVNSIDDC-KNTPLHHASQAPSLSRLVPKLLE----RGADVNAKNIKGETPLY 312 (682)
T ss_pred CCcHHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHhCCCHHHHHHHHHH----CCCCCCCcCCCCCCHHH
Confidence 45689999999999999998874 56778888876 99999999999996 68999998 67889999999999999
Q ss_pred HHHHcC-CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 91 MAAKNG-CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 91 ~A~~~g-~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
+|+..| +.+++++|+..|++++..|..|+||||+|+. ..++.+++.+|++.|++++.+|..|+||||+|+. .++.
T Consensus 313 ~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~---~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~-~~~~ 388 (682)
T PHA02876 313 LMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAST---LDRNKDIVITLLELGANVNARDYCDKTPIHYAAV-RNNV 388 (682)
T ss_pred HHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHH---hCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH-cCCH
Confidence 999999 5899999999999999999999999999983 2457889999999999999999999999955554 6678
Q ss_pred HHHHHHHhhhHHHHHH
Q 011578 170 KLRELLLWHSEEQRKR 185 (482)
Q Consensus 170 ~~~~lL~~~~~~~~~~ 185 (482)
+++++|+++|++....
T Consensus 389 ~iv~~Ll~~gad~~~~ 404 (682)
T PHA02876 389 VIINTLLDYGADIEAL 404 (682)
T ss_pred HHHHHHHHCCCCcccc
Confidence 8999999998887654
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=224.93 Aligned_cols=166 Identities=17% Similarity=0.274 Sum_probs=148.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+....++||.||..|+.+.++.++ +.+.++|..|.. |.||||+||..|+.+++++|++ .|+++|.+|.+|+|
T Consensus 520 ~~~~~~~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~----~gadin~~d~~G~T 593 (823)
T PLN03192 520 HDDPNMASNLLTVASTGNAALLEELL-KAKLDPDIGDSK-GRTPLHIAASKGYEDCVLVLLK----HACNVHIRDANGNT 593 (823)
T ss_pred cCCccchhHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHh----cCCCCCCcCCCCCC
Confidence 44456789999999999999999998 557889999886 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|++.++..+. ..|.+|||+|+ ..|+.+++++|+++|+|+|.+|.+|+||||+ |+..+
T Consensus 594 pL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa----~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~-A~~~g 666 (823)
T PLN03192 594 ALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAA----KRNDLTAMKELLKQGLNVDSEDHQGATALQV-AMAED 666 (823)
T ss_pred HHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCC
Confidence 99999999999999999998876653 46789999999 8999999999999999999999999999955 55577
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++.+...
T Consensus 667 ~~~iv~~Ll~~GAdv~~~~ 685 (823)
T PLN03192 667 HVDMVRLLIMNGADVDKAN 685 (823)
T ss_pred cHHHHHHHHHcCCCCCCCC
Confidence 8899999999999876554
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-23 Score=174.36 Aligned_cols=157 Identities=23% Similarity=0.278 Sum_probs=131.7
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
..-.+++|+.+++.+-+++.+..+. ...+|..|.. |.|||.||+.+|+.++|++||+ .|++++...++..|+
T Consensus 125 vs~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De~-GfTpLiWAaa~G~i~vV~fLL~----~GAdp~~lgk~resA 196 (296)
T KOG0502|consen 125 VSLMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDEF-GFTPLIWAAAKGHIPVVQFLLN----SGADPDALGKYRESA 196 (296)
T ss_pred cccccCChhhHHHHHHHHHHHHHHh---hccccCcccc-CchHhHHHHhcCchHHHHHHHH----cCCChhhhhhhhhhh
Confidence 3445788899999888887776544 3557888876 9999999999999999999999 688888888889999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
|++|+..|..++|++|+.++.|+|..|.+|-|||-+|+ +.||.+||+.|++.|||++..+..|+++++.|.+ .|.
T Consensus 197 LsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAv----rgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVa-lGy 271 (296)
T KOG0502|consen 197 LSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAV----RGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVA-LGY 271 (296)
T ss_pred HhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeee----cCChHHHHHHHHhcCCCcccccccCCcHHHHHHH-hhh
Confidence 99999999999999999999999999999999999999 8999999999999999999999999999955554 445
Q ss_pred hHHHHHHHhh
Q 011578 169 AKLRELLLWH 178 (482)
Q Consensus 169 ~~~~~lL~~~ 178 (482)
..+..++.++
T Consensus 272 r~Vqqvie~h 281 (296)
T KOG0502|consen 272 RIVQQVIEKH 281 (296)
T ss_pred HHHHHHHHHH
Confidence 5555444433
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-23 Score=178.29 Aligned_cols=139 Identities=20% Similarity=0.272 Sum_probs=120.8
Q ss_pred CCCCchHhHHHHHcCCHHHHHHH---HhhCCCCccCCCCCCCChHHHHHHhCCcHHH---HHHHHcCCCCCCcccccCc-
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRL---LRENPSLLNERNPVMAQTPLHVSAGYNKAEI---VKSLLEWPGNDKVELEAQN- 82 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~l---l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~---v~~Ll~~~~~~~~~~~~~~- 82 (482)
...+.++||.||+.|+.+.+..+ |...+..++..+.. |+||||+|+..|+.++ +++|++ .|+++|.++
T Consensus 17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~-g~t~Lh~Aa~~g~~~~~~~i~~Ll~----~Gadin~~d~ 91 (166)
T PHA02743 17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHH-GRQCTHMVAWYDRANAVMKIELLVN----MGADINAREL 91 (166)
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCC-CCcHHHHHHHhCccCHHHHHHHHHH----cCCCCCCCCC
Confidence 45677899999999999655543 33567778888876 9999999999988654 789998 578899998
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCC
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 157 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~t 157 (482)
..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+ ..++.+++++|+++|++++.++..|.+
T Consensus 92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~----~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 163 (166)
T PHA02743 92 GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY----KMRDRRMMEILRANGAVCDDPLSIGLS 163 (166)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence 589999999999999999999995 89999999999999999999 888999999999999999999887754
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=185.51 Aligned_cols=223 Identities=20% Similarity=0.271 Sum_probs=161.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.+++.+|++.+..+ ...+..+ +.....++++||||||||||++||.|++.... .+-.|++++
T Consensus 135 ktL~dyvGQ~hlv~q-~gllrs~------------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~----~SyrfvelS 197 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQ-DGLLRSL------------IEQNRIPSMILWGPPGTGKTTLARLIASTSKK----HSYRFVELS 197 (554)
T ss_pred chHHHhcchhhhcCc-chHHHHH------------HHcCCCCceEEecCCCCchHHHHHHHHhhcCC----CceEEEEEe
Confidence 567888888877555 2221111 12346789999999999999999999985543 223577777
Q ss_pred cccccccccccchhhHHHHHHhcC--------CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~--------~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
+..- ....++++|++++ ..|||||||+++...+| +.||..++.|.+++|+|||.
T Consensus 198 At~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 198 ATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPHVENGDITLIGATTE 259 (554)
T ss_pred cccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccceeccCceEEEecccC
Confidence 6542 2346788888764 38999999999999888 99999999999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccc-ccccc-ccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL-LYGFK-LHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
|+...+ +.+|++|+ .+|.+.++..++...||.+-+....+... ..++. ....++...++.++... .|
T Consensus 260 NPSFql---n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls-------dG 328 (554)
T KOG2028|consen 260 NPSFQL---NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS-------DG 328 (554)
T ss_pred CCccch---hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc-------Cc
Confidence 998777 88899999 89999999999999999987664432111 11221 12246777777777654 56
Q ss_pred CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 433 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
+.|..-|.++.+......|- .......++.+|++++|+.
T Consensus 329 DaR~aLN~Lems~~m~~tr~-----g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 329 DARAALNALEMSLSMFCTRS-----GQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred hHHHHHHHHHHHHHHHHhhc-----CCcccceecHHHHHHHHhh
Confidence 67777788877744332221 1124467999999999875
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-23 Score=186.27 Aligned_cols=160 Identities=24% Similarity=0.317 Sum_probs=144.8
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhC-----CcHHHHHHHHcCCCCCCcccccCc-
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-----NKAEIVKSLLEWPGNDKVELEAQN- 82 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~- 82 (482)
.+++|+|+||+++..+|.++|+.||..+.++++..+.. |+||+++|+.. .+..+|..|... .++|++-
T Consensus 264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA-GYtpiMLaALA~lk~~~d~~vV~~LF~m-----gnVNaKAs 337 (452)
T KOG0514|consen 264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA-GYTPVMLAALAKLKQPADRTVVERLFKM-----GDVNAKAS 337 (452)
T ss_pred hcCCCCeeeeeeecccchHHHHHHhccCcccccccccc-cccHHHHHHHHhhcchhhHHHHHHHHhc-----cCcchhhh
Confidence 46789999999999999999999999999999999987 99999999854 467899999874 4677664
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCCCCCChhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDH 161 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~ 161 (482)
..|+|+|++|+.+|+.++|+.||.+|||+|.+|.+|-|+|++|+ .+||.+++++||.. ++|+...|.+|-|+| .
T Consensus 338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~----EHGhkEivklLLA~p~cd~sLtD~DgSTAl-~ 412 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAA----EHGHKEIVKLLLAVPSCDISLTDVDGSTAL-S 412 (452)
T ss_pred hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhh----hhChHHHHHHHhccCcccceeecCCCchhh-h
Confidence 67999999999999999999999999999999999999999999 99999999999965 899999999999999 7
Q ss_pred hhcCCCChHHHHHHHhhh
Q 011578 162 LSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~ 179 (482)
.|...|+.+|..+|-.+.
T Consensus 413 IAleagh~eIa~mlYa~~ 430 (452)
T KOG0514|consen 413 IALEAGHREIAVMLYAHM 430 (452)
T ss_pred hHHhcCchHHHHHHHHHH
Confidence 778888999888776543
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=175.46 Aligned_cols=134 Identities=21% Similarity=0.229 Sum_probs=113.8
Q ss_pred CCCCCCCChHHHHHHhCCcHHHHHHHHcCC--CCCCcccccCcCCCChHHHHHHHcCC----HHHHHHHHhCCCCccccc
Q 011578 42 ERNPVMAQTPLHVSAGYNKAEIVKSLLEWP--GNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKA 115 (482)
Q Consensus 42 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~~~~~d 115 (482)
..+.. |.||||+|+..|+.++++.|+... ...+++++.+|..|+||||+|+..|+ .+++++|+++|++++.++
T Consensus 16 ~~~~~-g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 16 EKNSE-GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred ccccC-CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 34444 999999999999999999986531 12467899999999999999999998 588999999999999998
Q ss_pred c-CCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 116 N-NGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 116 ~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
. +|+||||+|+ ..++.+++++|++ .|++++.+|.+|+||||+ |...+..+++++|.++++.
T Consensus 95 ~~~g~TpLh~A~----~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~-A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 95 MLEGDTALHLAA----HRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL-AIDNEDVAMMQILREIVAT 157 (169)
T ss_pred cCCCCCHHHHHH----HcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHH-HHHCCCHHHHHHHHHHHHH
Confidence 5 8999999999 8889999999997 599999999999999944 5556677888898877654
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=200.29 Aligned_cols=145 Identities=30% Similarity=0.477 Sum_probs=133.0
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..++.|.||||+||+.|+.+.|..|| ..|.+++.++.+ +.||||.||.+|+.++|+-||+. ......|..|-.|.|
T Consensus 268 ~~d~dg~tpLH~a~r~G~~~svd~Ll-~~Ga~I~~kn~d-~~spLH~AA~yg~~ntv~rLL~~--~~~rllne~D~~g~t 343 (929)
T KOG0510|consen 268 DEDNDGCTPLHYAARQGGPESVDNLL-GFGASINSKNKD-EESPLHFAAIYGRINTVERLLQE--SDTRLLNESDLHGMT 343 (929)
T ss_pred cccccCCchHHHHHHcCChhHHHHHH-HcCCcccccCCC-CCCchHHHHHcccHHHHHHHHhC--cCccccccccccCCC
Confidence 45788999999999999999999888 557778888876 99999999999999999999982 145678899999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCcc---ccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhh
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIE---AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~---~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
|||+|+++||..++++|++.||+.. ..|.+|.||||.|+ ..|+..+|++|+.+||++..+|+.|.|+++
T Consensus 344 pLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa----~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~ 415 (929)
T KOG0510|consen 344 PLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAA----KYGNTSAVQKLISHGADIGVKNKKGKSAFD 415 (929)
T ss_pred chhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHH----HhccHHHHHHHHHcCCceeecccccccccc
Confidence 9999999999999999999999877 56999999999999 788999999999999999999999999997
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-22 Score=172.53 Aligned_cols=132 Identities=27% Similarity=0.355 Sum_probs=117.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhh-----CCCCccCCCCCCCChHHHHHHhCCc----HHHHHHHHcCCCCCCccc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRE-----NPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVEL 78 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~-----~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~ 78 (482)
.++..|.||||+||..|+.+.++.++.. .+.+++..+.. |+||||+|+..|+ .+++++|++ .++++
T Consensus 16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~-g~T~Lh~A~~~g~~~~~~~ii~~Ll~----~gadi 90 (169)
T PHA02741 16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA-GQMCIHIAAEKHEAQLAAEIIDHLIE----LGADI 90 (169)
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC-CCcHHHHHHHcCChHHHHHHHHHHHH----cCCCC
Confidence 4567899999999999999999988642 25678888886 9999999999999 589999999 57889
Q ss_pred ccCcC-CCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 79 EAQNM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 79 ~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
+.++. .|+||||+|+..++.+++++|+. .|++++..|.+|+||||+|+ ..++.+++++|+++++..
T Consensus 91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~----~~~~~~iv~~L~~~~~~~ 158 (169)
T PHA02741 91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI----DNEDVAMMQILREIVATS 158 (169)
T ss_pred CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH----HCCCHHHHHHHHHHHHHh
Confidence 99885 89999999999999999999997 59999999999999999999 888999999999887653
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-22 Score=171.29 Aligned_cols=166 Identities=24% Similarity=0.240 Sum_probs=150.8
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
....+.|++++|.++-.|+...+...| .++...|..+.- +++|+.|++...+.+.+-.+.+ ..+|..|..|.
T Consensus 90 ~~t~p~g~~~~~v~ap~~s~~k~sttl-tN~~rgnevs~~-p~s~~slsVhql~L~~~~~~~~------n~VN~~De~Gf 161 (296)
T KOG0502|consen 90 DETDPEGWSALLVAAPCGSVDKVSTTL-TNGARGNEVSLM-PWSPLSLSVHQLHLDVVDLLVN------NKVNACDEFGF 161 (296)
T ss_pred CCCCchhhhhhhhcCCCCCcceeeeee-cccccCCccccc-cCChhhHHHHHHHHHHHHHHhh------ccccCccccCc
Confidence 344566999999999999999998888 556677887775 9999999999999999988876 45899999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
|||.||+.+|++.+|++|++.|||++...++..++|.+|+ +.|..++|++|+.++.|+|..|.+|-||| .+|.++
T Consensus 162 TpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt----~ggytdiV~lLL~r~vdVNvyDwNGgTpL-lyAvrg 236 (296)
T KOG0502|consen 162 TPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT----RGGYTDIVELLLTREVDVNVYDWNGGTPL-LYAVRG 236 (296)
T ss_pred hHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh----cCChHHHHHHHHhcCCCcceeccCCCcee-eeeecC
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999 888889
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
++..+++.|+..|++...-
T Consensus 237 nhvkcve~Ll~sGAd~t~e 255 (296)
T KOG0502|consen 237 NHVKCVESLLNSGADVTQE 255 (296)
T ss_pred ChHHHHHHHHhcCCCcccc
Confidence 9999999999999986543
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-23 Score=179.93 Aligned_cols=155 Identities=26% Similarity=0.334 Sum_probs=132.2
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCC
Q 011578 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC 97 (482)
Q Consensus 18 ~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~ 97 (482)
+--|+.|+.-.|+..|.....+.|..|+. |.+||||||..||..+|+.|+. .|+.+|..|....||||+|+.+||
T Consensus 5 f~wcregna~qvrlwld~tehdln~gddh-gfsplhwaakegh~aivemll~----rgarvn~tnmgddtplhlaaahgh 79 (448)
T KOG0195|consen 5 FGWCREGNAFQVRLWLDDTEHDLNVGDDH-GFSPLHWAAKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAHGH 79 (448)
T ss_pred hhhhhcCCeEEEEEEecCccccccccccc-CcchhhhhhhcccHHHHHHHHh----cccccccccCCCCcchhhhhhccc
Confidence 34467788877887787777888888887 9999999999999999999999 688999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHh
Q 011578 98 NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (482)
Q Consensus 98 ~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (482)
.++|+.|++..+|+|+.+..|+||||||| ..|...+++-|+..|+.+++.|++|.||| -.|...-...+.++-.+
T Consensus 80 rdivqkll~~kadvnavnehgntplhyac----fwgydqiaedli~~ga~v~icnk~g~tpl-dkakp~l~~~l~e~aek 154 (448)
T KOG0195|consen 80 RDIVQKLLSRKADVNAVNEHGNTPLHYAC----FWGYDQIAEDLISCGAAVNICNKKGMTPL-DKAKPMLKNTLLEIAEK 154 (448)
T ss_pred HHHHHHHHHHhcccchhhccCCCchhhhh----hhcHHHHHHHHHhccceeeecccCCCCch-hhhchHHHHHHHHHHHH
Confidence 99999999999999999999999999999 55678899999999999999999999999 44443333334444445
Q ss_pred hhHHH
Q 011578 178 HSEEQ 182 (482)
Q Consensus 178 ~~~~~ 182 (482)
+|..+
T Consensus 155 ~gq~~ 159 (448)
T KOG0195|consen 155 HGQSP 159 (448)
T ss_pred hCCCC
Confidence 55443
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=167.59 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=133.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.+.|++.+|++.+|+++.-++.+.+. .....-|+||+||||.||||+|..+|++++......++|.++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~-----------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKK-----------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHh-----------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-
Confidence 46789999999999999988766542 234677999999999999999999999998744444444442
Q ss_pred ecccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------------
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------- 344 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------------- 344 (482)
.+ .-+..++.. -++-|||||||+++.+ .+-..|+..|++.
T Consensus 90 K~------------gDlaaiLt~Le~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 90 KP------------GDLAAILTNLEEGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred Ch------------hhHHHHHhcCCcCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 11 223344443 3568999999999998 3447788888862
Q ss_pred ----cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHH
Q 011578 345 ----KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 420 (482)
Q Consensus 345 ----~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (482)
.+++|+|||...+. ..+|++||..+.++..|+.+|+.+|+.+.... +..++++++..+++
T Consensus 147 ldLppFTLIGATTr~G~l-----t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-----------l~i~i~~~~a~eIA 210 (332)
T COG2255 147 LDLPPFTLIGATTRAGML-----TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-----------LGIEIDEEAALEIA 210 (332)
T ss_pred ccCCCeeEeeeccccccc-----cchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-----------hCCCCChHHHHHHH
Confidence 36899998887775 67789999999999999999999999987654 34677888888888
Q ss_pred HHHh
Q 011578 421 EKET 424 (482)
Q Consensus 421 ~~~~ 424 (482)
.++.
T Consensus 211 ~rSR 214 (332)
T COG2255 211 RRSR 214 (332)
T ss_pred Hhcc
Confidence 8763
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=187.22 Aligned_cols=151 Identities=32% Similarity=0.425 Sum_probs=102.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC-------------
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------------- 73 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~------------- 73 (482)
...+.+|.|+||.||...+.++|++++ +.+.++|..+.. ||||||.|+..||..++++|+++|++
T Consensus 67 ~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~e-~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~d 144 (527)
T KOG0505|consen 67 NLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDNE-GWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYD 144 (527)
T ss_pred cccCCccchhHHHHHhcccHHHHHHHH-HhcCCccccccc-cCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccc
Confidence 445667777777777777777777666 456667777765 77777777777777777777776553
Q ss_pred ------------------------------------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCc
Q 011578 74 ------------------------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111 (482)
Q Consensus 74 ------------------------------------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 111 (482)
.|...+..+..|.|.||.|+.+|..++.++|+++|.++
T Consensus 145 l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~ 224 (527)
T KOG0505|consen 145 LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV 224 (527)
T ss_pred cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence 12333333444667777777777777777777777777
Q ss_pred cccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 112 EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 112 ~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
+.+|.+||||||.|+ ..|..+++++|+++|++++.....|.||++.+.
T Consensus 225 ~~~D~dgWtPlHAAA----~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d 272 (527)
T KOG0505|consen 225 NIKDYDGWTPLHAAA----HWGQEDACELLVEHGADMDAKTKMGETPLDVAD 272 (527)
T ss_pred ccccccCCCcccHHH----HhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence 777777777777777 445666777777777777777777777764443
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-22 Score=170.92 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=102.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHh----hCCCCccCCCCCCCChHHHHHHhCCcH---HHHHHHHcCCCCCCccccc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLR----ENPSLLNERNPVMAQTPLHVSAGYNKA---EIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~----~~~~~~~~~~~~~g~tpLh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~ 80 (482)
..+..|.||||+||..|+...+..... ..+..++..+.. |+||||+|+..|+. +++++|++ .|++++.
T Consensus 12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~-g~t~Lh~a~~~~~~~~~e~v~~Ll~----~gadin~ 86 (154)
T PHA02736 12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRH-GKQCVHIVSNPDKADPQEKLKLLME----WGADING 86 (154)
T ss_pred hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCC-CCEEEEeecccCchhHHHHHHHHHH----cCCCccc
Confidence 345678999999999998533221111 112223344554 89999999998886 46788888 5778888
Q ss_pred Cc-CCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcc
Q 011578 81 QN-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149 (482)
Q Consensus 81 ~~-~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~ 149 (482)
++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+ ..|+.+++++|+++|++++
T Consensus 87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~----~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC----ERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCC
Confidence 87 489999999999999999999997 48999999999999999999 7888999999999988875
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-22 Score=207.81 Aligned_cols=160 Identities=31% Similarity=0.386 Sum_probs=118.8
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
.|.||||.|+..|+.+.++-+++ .+...+...+. |.|+||.|...+...+++.+++ .|++++.++..|+||||.
T Consensus 473 ~G~T~Lhlaaq~Gh~~~~~llle-~~~~~~~~~~~-~l~~lhla~~~~~v~~~~~l~~----~ga~v~~~~~r~~TpLh~ 546 (1143)
T KOG4177|consen 473 QGFTPLHLAAQEGHTEVVQLLLE-GGANDNLDAKK-GLTPLHLAADEDTVKVAKILLE----HGANVDLRTGRGYTPLHV 546 (1143)
T ss_pred ccCcchhhhhccCCchHHHHhhh-cCCccCccchh-ccchhhhhhhhhhHHHHHHHhh----cCCceehhcccccchHHH
Confidence 34444444444444444443332 22222222222 4444444444444444444444 578899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHH
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~ 171 (482)
||..|++++|++|+++|+|++.+++.|+||||.|| ..|+.+|+.+|+++|+++|..|.+|.||| +.|...+...+
T Consensus 547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa----~~G~~~i~~LLlk~GA~vna~d~~g~TpL-~iA~~lg~~~~ 621 (1143)
T KOG4177|consen 547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAA----QQGHNDIAELLLKHGASVNAADLDGFTPL-HIAVRLGYLSV 621 (1143)
T ss_pred HHhcCCchHHHHhhhCCccccccCCCCCChhhHHH----HcChHHHHHHHHHcCCCCCcccccCcchh-HHHHHhcccch
Confidence 99999999999999999999999999999999999 88999999999999999999999999999 55555677778
Q ss_pred HHHHHhhhHHH
Q 011578 172 RELLLWHSEEQ 182 (482)
Q Consensus 172 ~~lL~~~~~~~ 182 (482)
+++|...++.+
T Consensus 622 ~k~l~~~~~~~ 632 (1143)
T KOG4177|consen 622 VKLLKVVTATP 632 (1143)
T ss_pred hhHHHhccCcc
Confidence 88888777763
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-22 Score=172.16 Aligned_cols=140 Identities=19% Similarity=0.135 Sum_probs=119.4
Q ss_pred CCCccCCCCCCCChHHHHHHhCCcH----HHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHH---HHHHHhCCC
Q 011578 37 PSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA---AKLLLAHGA 109 (482)
Q Consensus 37 ~~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~---v~~Ll~~ga 109 (482)
+.+++..+.. +.++||+||..|+. +++++|++ .+.+++.+|..|+||||+|+..|+.+. +++|+++|+
T Consensus 10 ~~~~~~~~~~-~~~~l~~a~~~g~~~~l~~~~~~l~~----~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga 84 (166)
T PHA02743 10 NLGAVEIDED-EQNTFLRICRTGNIYELMEVAPFISG----DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA 84 (166)
T ss_pred chHHhhhccC-CCcHHHHHHHcCCHHHHHHHHHHHhh----cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC
Confidence 4455556655 88999999999998 56667777 577889999999999999999988654 899999999
Q ss_pred Cccccc-cCCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 110 FIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 110 ~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++|.+| ..|+||||+|+ ..++.+++++|++ .|++++.+|..|+||||+++ ..++..++++|+.+|++.+.++
T Consensus 85 din~~d~~~g~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~-~~~~~~iv~~Ll~~ga~~~~~~ 158 (166)
T PHA02743 85 DINARELGTGNTLLHIAA----STKNYELAEWLCRQLGVNLGAINYQHETAYHIAY-KMRDRRMMEILRANGAVCDDPL 158 (166)
T ss_pred CCCCCCCCCCCcHHHHHH----HhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCcc
Confidence 999998 58999999999 8889999999995 89999999999999995554 5667889999999998866554
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-21 Score=185.21 Aligned_cols=170 Identities=15% Similarity=0.040 Sum_probs=136.2
Q ss_pred CccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCC----CCCChHHHHHHhCCcHHHHHHHHcCCCCCCcc
Q 011578 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP----VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77 (482)
Q Consensus 2 ~~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~----~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 77 (482)
..|+|... ..+.||||.|+..|+.++++.|+.++..+.+..+. ..+.||+|.|+..++.+++++|++ .|++
T Consensus 139 ~~GADIn~-~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs----~GAD 213 (437)
T PHA02795 139 DHGAVIYK-IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP----YIED 213 (437)
T ss_pred HCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh----CcCC
Confidence 45777655 34589999999999999999999776544443321 237899999999999999999999 5889
Q ss_pred cccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhcc----CCChHHHHHHHhhCCCCccccCC
Q 011578 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI----RSEDYATVKTLLEYNADCSAKDN 153 (482)
Q Consensus 78 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~----~~~~~~~v~~Ll~~gad~~~~d~ 153 (482)
+|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+. ..++.+++++|+++|++++..+.
T Consensus 214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~ 293 (437)
T PHA02795 214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL 293 (437)
T ss_pred cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence 99999999999999999999999999999999999999999999999994331 12367999999999999987543
Q ss_pred CCCChhhhhhcCCCChHHHHHHHhhhHHH
Q 011578 154 EGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 154 ~g~tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (482)
|++.. . ....++.+.+..+....
T Consensus 294 ---~~~~~-~--~~n~~~ik~lI~y~~~l 316 (437)
T PHA02795 294 ---AILNN-T--IENHDVIKLCIKYFMMV 316 (437)
T ss_pred ---Hhhhc-c--cchHHHHHHHHHHHHhc
Confidence 33311 1 12567788888777643
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=205.98 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=128.3
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||.||..|+.++++.|+. .+.++|..+.. |+||||+|+..|+.+++++|++. ++..+ ...+.
T Consensus 552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~~-G~TpL~~A~~~g~~~iv~~L~~~----~~~~~--~~~~~ 623 (823)
T PLN03192 552 DIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDAN-GNTALWNAISAKHHKIFRILYHF----ASISD--PHAAG 623 (823)
T ss_pred CCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHhc----CcccC--cccCc
Confidence 4456789999999999999999998885 57889999886 99999999999999999999984 33322 24577
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCC-CChhhh
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPLDH 161 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g-~tpl~~ 161 (482)
+|||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+ ..|+.+++++|+++|+|++..|..| .||++.
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l 695 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM----AEDHVDMVRLLIMNGADVDKANTDDDFSPTEL 695 (823)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999 8999999999999999999999988 888843
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-21 Score=183.98 Aligned_cols=169 Identities=29% Similarity=0.343 Sum_probs=148.2
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
..-.+..||..|+.+.|..+|.. +..+|..+.+ |.|+||-+|...+.+||++|++ .+++||..|..||||||.|
T Consensus 40 ~sa~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~D-glTalhq~~id~~~e~v~~l~e----~ga~Vn~~d~e~wtPlhaa 113 (527)
T KOG0505|consen 40 DSAVFLEACSRGDLEEVRKLLNR-GASPNLCNVD-GLTALHQACIDDNLEMVKFLVE----NGANVNAQDNEGWTPLHAA 113 (527)
T ss_pred chHHHHhccccccHHHHHHHhcc-CCCccccCCc-cchhHHHHHhcccHHHHHHHHH----hcCCccccccccCCcchhh
Confidence 34457889999999999999955 5666888876 9999999999999999999999 6889999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccc---------------------------------------------------------
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKA--------------------------------------------------------- 115 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d--------------------------------------------------------- 115 (482)
+..|+..++++|+.+|+++-..|
T Consensus 114 ascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~ 193 (527)
T KOG0505|consen 114 ASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDA 193 (527)
T ss_pred cccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 99999999999999987433222
Q ss_pred --cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhHhhhh
Q 011578 116 --NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS 192 (482)
Q Consensus 116 --~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~~~~~ 192 (482)
..|.|.||.|+ .+|..++..+|+++|.+++++|.+||||| |+|+.++...++++|..+|++.+.......++
T Consensus 194 ~~~rG~T~lHvAa----a~Gy~e~~~lLl~ag~~~~~~D~dgWtPl-HAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p 267 (527)
T KOG0505|consen 194 RHARGATALHVAA----ANGYTEVAALLLQAGYSVNIKDYDGWTPL-HAAAHWGQEDACELLVEHGADMDAKTKMGETP 267 (527)
T ss_pred cccccchHHHHHH----hhhHHHHHHHHHHhccCcccccccCCCcc-cHHHHhhhHhHHHHHHHhhcccchhhhcCCCC
Confidence 26899999999 89999999999999999999999999999 88888999999999999999877666544443
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=173.80 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=125.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC---CCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC-cCCCCh
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERN---PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGET 87 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~---~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t 87 (482)
...++||.|+..|+.++++.||+ .|.++|..+ +..|.||||+|+..|+.+++++|++ .|+++|.+ +..|.|
T Consensus 32 ~~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~----~GADVN~~~~~~g~T 106 (300)
T PHA02884 32 CIANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR----YGADVNRYAEEAKIT 106 (300)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcCcccCCCCCC
Confidence 33456778888899999999884 567788764 2349999999999999999999999 57889986 468999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++..++..+. |.. .+..+.+|++.+ .
T Consensus 107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~----~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----~ 173 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL----MICNNFLAFMIC--DNE---ISNFYKHPKKIL----I 173 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HhCChhHHHHhc--CCc---ccccccChhhhh----c
Confidence 999999999999999999999999999999999999999 666777775554 332 466678888443 2
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
..++.++|..++.-
T Consensus 174 n~ei~~~Lish~vl 187 (300)
T PHA02884 174 NFDILKILVSHFIL 187 (300)
T ss_pred cHHHHHHHHHHHHH
Confidence 57888999988874
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=190.56 Aligned_cols=172 Identities=17% Similarity=0.088 Sum_probs=135.9
Q ss_pred ccCCCCCchHhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC--cHHHHHHHHcCCCCCCcccccC
Q 011578 7 RRSRSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
..++..|.||||+|+..| +.++|+.|| +.|++++..+.. |+||||+|+..+ +.++|++|++.|+ +++++..
T Consensus 35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~~-G~TPLh~Aa~~~~~~~eIv~~Ll~~~~--~~~~~~~ 110 (672)
T PHA02730 35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNNE-GLTPLGVYSKRKYVKSQIVHLLISSYS--NASNELT 110 (672)
T ss_pred hhcCCCCCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCCC-CCChHHHHHHcCCCcHHHHHHHHhcCC--CCCcccc
Confidence 456678999999999997 589999888 568889999886 999999999976 7999999999643 4566777
Q ss_pred cCCCChHHHHHHH--cCCHHHHHHHHh-CCCCcccccc-----CCCcceeeehhhccCCChHHHHHHHhhCCCCcc----
Q 011578 82 NMYGETPLHMAAK--NGCNEAAKLLLA-HGAFIEAKAN-----NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS---- 149 (482)
Q Consensus 82 ~~~g~tpLh~A~~--~g~~~~v~~Ll~-~ga~~~~~d~-----~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~---- 149 (482)
+.-+.+|||.++. +++.++|++|+. .+++++...+ .|.+|+++++ ..+++++|++|+++||+++
T Consensus 111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~----~~~~~eIvklLi~~g~~v~g~~~ 186 (672)
T PHA02730 111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTT----PNPRPEVLLWLLKSECYSTGYVF 186 (672)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhc----CCCchHHHHHHHHcCCccccccc
Confidence 7778888888887 788889999996 6678776643 6889999988 8888999999999999885
Q ss_pred ---ccCCCCCChhhh-h--h---cCCCChHHHHHHHhhhHHHHHHh
Q 011578 150 ---AKDNEGKTPLDH-L--S---NGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 150 ---~~d~~g~tpl~~-~--a---~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
..+..+.+|+-| . . ......+++++|+.+|++.+.+.
T Consensus 187 ~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd 232 (672)
T PHA02730 187 RSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD 232 (672)
T ss_pred ccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC
Confidence 234445444422 1 1 35567888899999988876554
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-21 Score=167.05 Aligned_cols=133 Identities=22% Similarity=0.212 Sum_probs=106.9
Q ss_pred cCCCCCCCChHHHHHHhCCcHHHHHHHHcCCC---CCCcccccCcCCCChHHHHHHHcCCH---HHHHHHHhCCCCcccc
Q 011578 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG---NDKVELEAQNMYGETPLHMAAKNGCN---EAAKLLLAHGAFIEAK 114 (482)
Q Consensus 41 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~~~~g~tpLh~A~~~g~~---~~v~~Ll~~ga~~~~~ 114 (482)
+..+.. |.||||+||..|+. +.+++..+. ..+..++.+|..|+||||+|+..|+. +++++|++.|++++.+
T Consensus 11 ~~~d~~-g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 11 SEPDIE-GENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HhcCCC-CCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 445554 99999999999983 333322110 01223456789999999999999987 4689999999999999
Q ss_pred c-cCCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 115 A-NNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 115 d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
| ..|+||||+|+ ..++.+++++|++ .|++++.+|..|+||||+|+ ..++.+++++|+.+|++
T Consensus 88 ~~~~g~T~Lh~A~----~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~-~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 88 ERVFGNTPLHIAV----YTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC-ERHDAKMMNILRAKGAQ 151 (154)
T ss_pred CCCCCCcHHHHHH----HhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH-HcCCHHHHHHHHHcCCC
Confidence 8 59999999999 8889999999997 59999999999999995555 56788899999988865
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=193.49 Aligned_cols=242 Identities=18% Similarity=0.235 Sum_probs=169.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~ 280 (482)
.++.++|.+...+++.+.+. .....+++|+||||||||++|+.+|+.+..... .....++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~----------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLC----------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CCCcccCcHHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 46678999988887665421 224568999999999999999999998853221 22456888
Q ss_pred eeccccc--ccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
++.+.+. .+|.|+.+..++++|+.+ .++||||||+|.+.+.+...++ ...+.+.|...+++|.+.+|++||..
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~--~~~~~~~L~~~l~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG--SMDASNLLKPALSSGKLRCIGSTTYE 321 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc--cHHHHHHHHHHHhCCCeEEEEecCHH
Confidence 8887776 478999999999999865 3589999999999876542222 12455778888999999999999997
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
.+...++.++++.+|| ..|+++.|+.+++.+|++........ .....++++++..++....+.-..+. -..
T Consensus 322 e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~-------~~~v~i~~~al~~~~~ls~ryi~~r~-~P~ 392 (731)
T TIGR02639 322 EYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEE-------FHHVKYSDEALEAAVELSARYINDRF-LPD 392 (731)
T ss_pred HHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHh-------ccCcccCHHHHHHHHHhhhccccccc-CCH
Confidence 7777777799999999 58999999999999999987765331 12245778888777664431000000 011
Q ss_pred hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 436 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 436 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
-.-.+++.|+.....+-. ......|+.+|+.+++..+
T Consensus 393 kai~lld~a~a~~~~~~~-----~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPK-----AKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHHhhhhhhcCcc-----cccccccCHHHHHHHHHHH
Confidence 223455666554322111 0123458888888888776
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=192.30 Aligned_cols=240 Identities=18% Similarity=0.257 Sum_probs=167.0
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
......++ ++.|++.+++.+.+++.... .+ +.....+++|+||||||||++|++||+.++. +
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~~~---~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-------~ 374 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAVQK---LR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR-------K 374 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHH---hh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-------C
Confidence 34445555 48999999999998754322 11 1123347999999999999999999999876 6
Q ss_pred eEEeecccc---------cccccccchhhHHHHHHhcC--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---
Q 011578 278 VTEVQRTDL---------VGEFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--- 343 (482)
Q Consensus 278 ~~~~~~~~~---------~~~~~g~~~~~~~~~~~~a~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--- 343 (482)
|+.++.+.. ...|+|.....+.+.|..+. ..||||||||++.+..+.+ ..+.|++.||.
T Consensus 375 ~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~-------~~~aLl~~ld~~~~ 447 (775)
T TIGR00763 375 FVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGD-------PASALLEVLDPEQN 447 (775)
T ss_pred eEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCC-------HHHHHHHhcCHHhc
Confidence 666654332 23578888888888887653 4799999999999754422 12556665542
Q ss_pred --------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-ccc
Q 011578 344 --------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLH 408 (482)
Q Consensus 344 --------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~ 408 (482)
+.+++|+|++. ...+ +|+|++|| .+|+|+.|+.+++.+|++.++..... ...++ ...
T Consensus 448 ~~f~d~~~~~~~d~s~v~~I~TtN~--~~~i---~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~--~~~~l~~~~ 519 (775)
T TIGR00763 448 NAFSDHYLDVPFDLSKVIFIATANS--IDTI---PRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKAL--EDHGLKPDE 519 (775)
T ss_pred CccccccCCceeccCCEEEEEecCC--chhC---CHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHH--HHcCCCcce
Confidence 35677776543 3333 89999999 58999999999999999988753221 01122 123
Q ss_pred CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcC-CCCCh--hhhhcccHHHHHHHHH
Q 011578 409 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDT--DELRTITLEDLEAGLK 475 (482)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~-~~~~~--~~~~~i~~~d~~~al~ 475 (482)
..++++++..+++.++ +..++|.|+..++..++..+.++.. +.... .....|+.+++++.+.
T Consensus 520 ~~~~~~~l~~i~~~~~-----~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 520 LKITDEALLLLIKYYT-----REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred EEECHHHHHHHHHhcC-----hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 4689999999999765 3566899999999999988777652 22111 1125788888877653
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-21 Score=202.28 Aligned_cols=174 Identities=33% Similarity=0.402 Sum_probs=152.5
Q ss_pred ccCCCCCchHhHHHHHcC-CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 7 RRSRSAKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
......|.|++|.|+..| ..+... ++.+.+.++|..... |.||||+|+..|+.+++..|++ .++..+...+.+
T Consensus 434 ~~~~~lG~T~lhvaa~~g~~~~~~~-~l~~~g~~~n~~s~~-G~T~Lhlaaq~Gh~~~~~llle----~~~~~~~~~~~~ 507 (1143)
T KOG4177|consen 434 NAKAKLGYTPLHVAAKKGRYLQIAR-LLLQYGADPNAVSKQ-GFTPLHLAAQEGHTEVVQLLLE----GGANDNLDAKKG 507 (1143)
T ss_pred hhHhhcCCChhhhhhhcccHhhhhh-hHhhcCCCcchhccc-cCcchhhhhccCCchHHHHhhh----cCCccCccchhc
Confidence 344567899999999999 555555 444778889999887 9999999999999999999998 567778888889
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
-|+||.|...+...+++.++++|++++.++.+|.||||.|+ ..|+.++|++|+++|+|++.+++.|+||||.||..
T Consensus 508 l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~----~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~ 583 (1143)
T KOG4177|consen 508 LTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV----HYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ 583 (1143)
T ss_pred cchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH----hcCCchHHHHhhhCCccccccCCCCCChhhHHHHc
Confidence 99999999999999999999999999999999999999999 88999999999999999999999999999666665
Q ss_pred CCChHHHHHHHhhhHHHHHHhhHhhh
Q 011578 166 PGSAKLRELLLWHSEEQRKRRALEAC 191 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~~~~~~ 191 (482)
++.+++.+|.++|++++..+....+
T Consensus 584 -G~~~i~~LLlk~GA~vna~d~~g~T 608 (1143)
T KOG4177|consen 584 -GHNDIAELLLKHGASVNAADLDGFT 608 (1143)
T ss_pred -ChHHHHHHHHHcCCCCCcccccCcc
Confidence 5999999999999988877654433
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-20 Score=152.70 Aligned_cols=120 Identities=33% Similarity=0.358 Sum_probs=109.4
Q ss_pred HHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhcc
Q 011578 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (482)
Q Consensus 51 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~ 130 (482)
-+.||+..+...-|+.||+. ....+|.+|.+|+||||.|+.+|+.++|+.|+..||+++++...||||||-||
T Consensus 66 l~lwaae~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAc---- 138 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSAC---- 138 (228)
T ss_pred HHHHHHhhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhh----
Confidence 46899999999999999985 44568999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHh
Q 011578 131 RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (482)
Q Consensus 131 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (482)
..++.+++.+||++|+|+|+.....+||||.+|...+......+|+.
T Consensus 139 kWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 139 KWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred cccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence 77899999999999999999999999999888877777776666663
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=179.62 Aligned_cols=237 Identities=16% Similarity=0.252 Sum_probs=173.2
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
....-++ +..|++.+|++|.+++.... ... ....+-++|.||||+|||++++.||+.+++ .|
T Consensus 316 ~a~~iLd~dHYGLekVKeRIlEyLAV~~---l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~R-------kf 378 (782)
T COG0466 316 KAEKILDKDHYGLEKVKERILEYLAVQK---LTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGR-------KF 378 (782)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHH---Hhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCC-------CE
Confidence 3344444 57999999999999865432 211 123345889999999999999999999988 78
Q ss_pred EEeeccccc---------ccccccchhhHHHHHHhcC--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----
Q 011578 279 TEVQRTDLV---------GEFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---- 343 (482)
Q Consensus 279 ~~~~~~~~~---------~~~~g~~~~~~~~~~~~a~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---- 343 (482)
+.++...+. ..|+|....++-+.+.++. .-|++|||||++..+.+++.. ++||+.+|.
T Consensus 379 vR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~ 451 (782)
T COG0466 379 VRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNN 451 (782)
T ss_pred EEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChH-------HHHHhhcCHhhcC
Confidence 877765432 2399999999988888875 489999999999987665443 567777763
Q ss_pred -------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccC
Q 011578 344 -------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHS 409 (482)
Q Consensus 344 -------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~ 409 (482)
.+|++|+| .|.++.+ ..+|++|+ ++|+++.|+.+|..+|.+.||-.... ...|+ .-..
T Consensus 452 ~F~DhYLev~yDLS~VmFiaT--ANsl~tI---P~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~--~~~gL~~~el 523 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIAT--ANSLDTI---PAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQL--KEHGLKKGEL 523 (782)
T ss_pred chhhccccCccchhheEEEee--cCccccC---ChHHhcce-eeeeecCCChHHHHHHHHHhcchHHH--HHcCCCccce
Confidence 45677776 3434433 88899999 99999999999999999998865432 23355 3456
Q ss_pred cccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 410 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.++++++..++++|++ ....|.++..+...+|+.+..+..+.... ...++..++++.|.
T Consensus 524 ~i~d~ai~~iI~~YTR-----EAGVR~LeR~i~ki~RK~~~~i~~~~~k~--~~~i~~~~l~~yLG 582 (782)
T COG0466 524 TITDEAIKDIIRYYTR-----EAGVRNLEREIAKICRKAAKKILLKKEKS--IVKIDEKNLKKYLG 582 (782)
T ss_pred eecHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHHHHHHHhcCccc--ceeeCHHHHHHHhC
Confidence 7899999999999984 34467787777777777766665322111 13677777777654
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-20 Score=182.05 Aligned_cols=184 Identities=25% Similarity=0.358 Sum_probs=141.8
Q ss_pred HHHhhhhchHHHHHH---HHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 203 NELSNIVGLHELKIQ---LRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
+.+++++|++.+... +.+++. .....+++|+||||||||++|+++|+.+.. .|+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~----------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-------~~~ 65 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIE----------------AGRLSSMILWGPPGTGKTTLARIIAGATDA-------PFE 65 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHH----------------cCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEE
Confidence 467889999988665 555431 224568999999999999999999997754 677
Q ss_pred EeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
.+++... +...++++++.+ ++.||||||+|.+....+ +.|+..++++.+++|++|
T Consensus 66 ~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q-----------~~LL~~le~~~iilI~at 127 (413)
T PRK13342 66 ALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQ-----------DALLPHVEDGTITLIGAT 127 (413)
T ss_pred EEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHH-----------HHHHHHhhcCcEEEEEeC
Confidence 7776532 123344555443 558999999999986444 788999999999999998
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
+.++...+ ++++++|| ..+.|++++.+++..+++..+.+... ++ ..++++++..++... .|
T Consensus 128 t~n~~~~l---~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-----~~---i~i~~~al~~l~~~s-------~G 188 (413)
T PRK13342 128 TENPSFEV---NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-----GL---VELDDEALDALARLA-------NG 188 (413)
T ss_pred CCChhhhc---cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-----CC---CCCCHHHHHHHHHhC-------CC
Confidence 87776555 89999999 89999999999999999998876421 21 356788888887754 68
Q ss_pred CcchhHHHHHHHHH
Q 011578 433 NGGLVDPMLVNARE 446 (482)
Q Consensus 433 ~~~~l~~~~~~a~~ 446 (482)
+.|.+.++++.+..
T Consensus 189 d~R~aln~Le~~~~ 202 (413)
T PRK13342 189 DARRALNLLELAAL 202 (413)
T ss_pred CHHHHHHHHHHHHH
Confidence 88999999888764
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=169.94 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=111.8
Q ss_pred CCcEEEEecccccccCCCCCCCh-hHHHHHHHHHhhhcC------------CcEEEEEecC---chhHHHHHhcCccccC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKD-YGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR 369 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~-~~~~~~~~ll~~l~~------------~~~~vi~~~~---~~~~~~~~~~~~~l~~ 369 (482)
..|||||||||+++.+.++.+.+ .+..+...||..+++ ..+.+|+++. ..+ .++ -|.|.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp-~Dl---IPEl~G 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKP-SDL---IPELQG 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCCh-hhc---cHHHhC
Confidence 55999999999999875433323 345688999999987 4567777763 222 223 699999
Q ss_pred CCcceeeCCCCCHHHHHHHH----HHHHhccccccccccccccCcccHHHHHHHHHHHhhH-hhccccCcchhHHHHHHH
Q 011578 370 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 370 R~~~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a 444 (482)
||+.++.+.+++.++..+|| ...+++.......+|. ...++++++.++++..... .......+|.|+.++++.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv--~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~ 402 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGV--TLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKL 402 (443)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCc--EEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999999999999 3344444332333344 4567999999999877531 111345689999999998
Q ss_pred HHHhhhhhcCCCCCh-hhhhcccHHHHHHHHHHHH
Q 011578 445 RENLDLRLSFDCLDT-DELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 445 ~~~~~~r~~~~~~~~-~~~~~i~~~d~~~al~~~~ 478 (482)
.... +++.++. .....|+.+-+.+.+..+.
T Consensus 403 L~d~----~Fe~p~~~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 403 LEDI----SFEAPDMSGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred HHHH----hccCCCCCCCEEEECHHHHHHHHHHHH
Confidence 8774 3333332 2234677777777766553
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-20 Score=186.75 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=131.9
Q ss_pred HhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc----HHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 16 TIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 16 ~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.||.-...+ +.++++.|| .+|+++|.. . .|+||||+|+..++ .+++++|+++|+ +.+++.+|..|.||
T Consensus 346 ~l~~Y~~~~~~v~ieIvelLI-s~GAdIN~k-~-~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga--~~dIN~kd~~G~T~ 420 (672)
T PHA02730 346 MLINYLHYGDMVSIPILRCML-DNGATMDKT-T-DNNYPLHDYFVNNNNIVDVNVVRFIVENNG--HMAINHVSNNGRLC 420 (672)
T ss_pred HHHHHHhcCCcCcHHHHHHHH-HCCCCCCcC-C-CCCcHHHHHHHHcCCcchHHHHHHHHHcCC--CccccccccCCCch
Confidence 677777766 578888777 557888875 4 49999999998875 899999999532 24689999999999
Q ss_pred HHH---HHHcC---------CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC-CC
Q 011578 89 LHM---AAKNG---------CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EG 155 (482)
Q Consensus 89 Lh~---A~~~g---------~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~-~g 155 (482)
||. |...+ ..+++++|+.+|+++|.+|..|+||||+|+ ..++.+++++|+++|+++|.+|. .|
T Consensus 421 Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa----~~~~~eive~LI~~GAdIN~~d~~~g 496 (672)
T PHA02730 421 MYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAV----DVNNIQFARRLLEYGASVNTTSRSII 496 (672)
T ss_pred HhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCcCC
Confidence 994 33332 235799999999999999999999999999 78899999999999999999997 59
Q ss_pred CChhhhhhcC-CCChHHHHHHHhhhHHHH
Q 011578 156 KTPLDHLSNG-PGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 156 ~tpl~~~a~~-~~~~~~~~lL~~~~~~~~ 183 (482)
.||||+++.. .++.+++++|+.+|+...
T Consensus 497 ~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 497 NTAIQKSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred cCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence 9999777653 467899999999987653
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=168.73 Aligned_cols=163 Identities=17% Similarity=0.285 Sum_probs=111.8
Q ss_pred CCcEEEEecccccccCCCCCCCh-hHHHHHHHHHhhhcC------------CcEEEEEecC---chhHHHHHhcCccccC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKD-YGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR 369 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~-~~~~~~~~ll~~l~~------------~~~~vi~~~~---~~~~~~~~~~~~~l~~ 369 (482)
..|||||||||+++.+..+.+.+ .+..|...||..+++ ..+.+|+++. ..+. ++ -|.|.+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~-Dl---IPEl~G 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPS-DL---IPELQG 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChh-hc---cHHHhC
Confidence 45999999999999866433333 345688999999987 4567777663 2222 22 699999
Q ss_pred CCcceeeCCCCCHHHHHHHH----HHHHhccccccccccccccCcccHHHHHHHHHHHhhHh-hccccCcchhHHHHHHH
Q 011578 370 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK-QRREMNGGLVDPMLVNA 444 (482)
Q Consensus 370 R~~~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~a 444 (482)
||+.++.+.+++.++..+|| ...+++.......+| +...++++++.++++...... ......+|.|+.+++..
T Consensus 323 R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~eg--v~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEG--VNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL 400 (441)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcC--cEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999999999999 233343332222334 445679999999998765211 11345679999999998
Q ss_pred HHHhhhhhcCCCCCh-hhhhcccHHHHHHHHHHHH
Q 011578 445 RENLDLRLSFDCLDT-DELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 445 ~~~~~~r~~~~~~~~-~~~~~i~~~d~~~al~~~~ 478 (482)
.... +++.++. .....|+.+-+.+.+..+.
T Consensus 401 l~d~----~fe~p~~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 401 LEDI----SFEAPDLSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred HHHH----HhcCCCCCCCEEEECHHHHHhHHHHHH
Confidence 8774 3333332 2234778888777776654
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-19 Score=172.64 Aligned_cols=257 Identities=18% Similarity=0.267 Sum_probs=167.7
Q ss_pred HHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC---CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC
Q 011578 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK---VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL 273 (482)
Q Consensus 198 ~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~ 273 (482)
..++...+++ ++|++.+++.+...+.. +..+...... -...+..++||+||||||||++|+++|+.+..
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~---~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~---- 134 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYN---HYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV---- 134 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHH---HHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC----
Confidence 3455666664 89999999988654321 1122111111 11124578999999999999999999998865
Q ss_pred CCCCeEEeeccccc-ccccccchhh-HHHHH-------HhcCCcEEEEecccccccCCCCC--CCh-hHHHHHHHHHhhh
Q 011578 274 PTDRVTEVQRTDLV-GEFVGHTGPK-TRRRI-------KEAEGGILFVDEAYRLIPMQKAD--DKD-YGIEALEEIMSVM 341 (482)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~~-------~~a~~~vl~iDE~d~l~~~~~~~--~~~-~~~~~~~~ll~~l 341 (482)
+|+.++++.+. ..|+|+.... +..++ +.+.++||||||||++.++..+. ..+ .+..+.+.||+.|
T Consensus 135 ---pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 135 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred ---CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence 88888887765 3588875433 34433 45677999999999998864321 112 2346778899988
Q ss_pred cCCc---------------EEEEEecCc--------hhH----------------------------HHHH---------
Q 011578 342 DGGK---------------VVVIFAGYS--------EPM----------------------------KRVI--------- 361 (482)
Q Consensus 342 ~~~~---------------~~vi~~~~~--------~~~----------------------------~~~~--------- 361 (482)
++.. .++|.|++. ... ..++
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~ 291 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI 291 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence 7421 123333221 000 0111
Q ss_pred h--cCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 362 A--SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 362 ~--~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
. ..|+|..|+|.++.|.+++.+++.+|+.. .+++..+....++ +...++++++..+++..+ .....+|
T Consensus 292 ~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~--i~L~~t~~al~~Ia~~~~----~~~~GAR 365 (412)
T PRK05342 292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDG--VELEFTDEALEAIAKKAI----ERKTGAR 365 (412)
T ss_pred HHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECHHHHHHHHHhCC----CCCCCCc
Confidence 0 15999999999999999999999999983 4443332222233 445689999999999743 2356789
Q ss_pred hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHH
Q 011578 436 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472 (482)
Q Consensus 436 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 472 (482)
.|+.++++.+......+.... ......|+.+.+.+
T Consensus 366 ~Lrriie~~l~~~~~~~p~~~--~~~~v~I~~~~v~~ 400 (412)
T PRK05342 366 GLRSILEEILLDVMFELPSRE--DVEKVVITKEVVEG 400 (412)
T ss_pred hHHHHHHHHhHHHHHhccccC--CCceEEECHHHhcc
Confidence 999999999998766554311 11234677777653
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=183.19 Aligned_cols=213 Identities=21% Similarity=0.273 Sum_probs=153.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC--CC-CCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--IL-PTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~--~~-~~~~~~ 279 (482)
..|++++|++...+.++..+ ....+.+++|+||||||||++|+++++.+.... .. ...+|+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al----------------~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL----------------CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH----------------hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 56888999999888877431 123567899999999999999999998765321 12 246899
Q ss_pred Eeecccc-------ccccccc--------------ch--hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHH
Q 011578 280 EVQRTDL-------VGEFVGH--------------TG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEE 336 (482)
Q Consensus 280 ~~~~~~~-------~~~~~g~--------------~~--~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ 336 (482)
+++++.. ....+|. ++ ......+.++.+++|||||++.|.+..| +.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q-----------~~ 194 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQM-----------NK 194 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHH-----------HH
Confidence 8887531 1112221 11 1122357788899999999999998555 77
Q ss_pred HHhhhcCC------------------------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 337 IMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 337 ll~~l~~~------------------------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
|++.|+++ ++++|++|++++. .+ +|++++|+ ..+.|++++.+++.
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-~L---~paLrsR~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-EI---PPALRSRC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc-cC---ChHHhhhh-heeeCCCCCHHHHH
Confidence 77776542 2467777666553 23 89999998 68899999999999
Q ss_pred HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhccc
Q 011578 387 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 466 (482)
Q Consensus 387 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~ 466 (482)
+|++..+++.. ..+++++++.+..+.+ |+|++.++++.|...+..+ ....|+
T Consensus 270 ~Il~~~a~k~~-----------i~is~~al~~I~~y~~--------n~Rel~nll~~Aa~~A~~~---------~~~~It 321 (531)
T TIGR02902 270 EIAKNAAEKIG-----------INLEKHALELIVKYAS--------NGREAVNIVQLAAGIALGE---------GRKRIL 321 (531)
T ss_pred HHHHHHHHHcC-----------CCcCHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHhhC---------CCcEEc
Confidence 99999988642 3578888887776542 6899999999998755221 124699
Q ss_pred HHHHHHHHH
Q 011578 467 LEDLEAGLK 475 (482)
Q Consensus 467 ~~d~~~al~ 475 (482)
.+|++.++.
T Consensus 322 ~~dI~~vl~ 330 (531)
T TIGR02902 322 AEDIEWVAE 330 (531)
T ss_pred HHHHHHHhC
Confidence 999998875
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=178.38 Aligned_cols=211 Identities=20% Similarity=0.292 Sum_probs=162.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+-.|++++|++|.+++..-. .+ +....+-++|+||||+|||++||.||..+++ .|+.++...+
T Consensus 412 DHYgm~dVKeRILEfiAV~k---Lr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-------kFfRfSvGG~ 474 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK---LR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNR-------KFFRFSVGGM 474 (906)
T ss_pred cccchHHHHHHHHHHHHHHh---hc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-------ceEEEecccc
Confidence 57999999999999865332 11 1224455789999999999999999999988 6777766432
Q ss_pred ------c---ccccccchhhHHHHHHhc--CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------------
Q 011578 287 ------V---GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------ 343 (482)
Q Consensus 287 ------~---~~~~g~~~~~~~~~~~~a--~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------------ 343 (482)
. ..|+|....++-+.++.. ..-+++|||||++....|++.. ++||+.||.
T Consensus 475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred ccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccc
Confidence 2 239999999999998865 4589999999999965554333 567777763
Q ss_pred -----CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHHHH
Q 011578 344 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIA 417 (482)
Q Consensus 344 -----~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~ 417 (482)
.+|.+|+|.+ .++.+ .|+|++|+ ++|+++.|..+|...|.+.||-.... ...|+ .-..+++++++.
T Consensus 548 Vp~DLSkVLFicTAN--~idtI---P~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~--~~~gl~~e~v~is~~al~ 619 (906)
T KOG2004|consen 548 VPVDLSKVLFICTAN--VIDTI---PPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQAL--KDCGLKPEQVKISDDALL 619 (906)
T ss_pred cccchhheEEEEecc--ccccC---Chhhhhhh-heeeccCccHHHHHHHHHHhhhhHHH--HHcCCCHHhcCccHHHHH
Confidence 4678888743 34433 89999999 99999999999999999999876643 23466 445678999999
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcC
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF 454 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~ 454 (482)
.++++|++ ....|.|+.-++..+|+.+.++..
T Consensus 620 ~lI~~Ycr-----EaGVRnLqk~iekI~Rk~Al~vv~ 651 (906)
T KOG2004|consen 620 ALIERYCR-----EAGVRNLQKQIEKICRKVALKVVE 651 (906)
T ss_pred HHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999984 344688888888888888887753
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=167.60 Aligned_cols=216 Identities=19% Similarity=0.204 Sum_probs=148.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++.+..+..+|+.+.......+.+ ..+..+++||||||||||++||-||...+..+..+++.-+.--
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h--------~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKH--------QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccc--------cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 34778888999999998875544332222 2356789999999999999999999988875555554433211
Q ss_pred cccccccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCC-ChhHHHHHHHHHhhhc--CCcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMD--GGKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~-~~~~~~~~~~ll~~l~--~~~~~vi~~~~~~ 355 (482)
+. +...++.++|+=+ ++-+|||||+|.+.-.|...- ++..+.++|.||-.-- +.+++++++|+..
T Consensus 424 G~--------qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 424 GA--------QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 495 (630)
T ss_pred ch--------HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCc
Confidence 11 2335677888643 457999999999998887543 6677889999987764 3678888886543
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccc---------------cccccCcccHHHHHHHH
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLY---------------GFKLHSSCSMDAIAALI 420 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~ 420 (482)
.- + |.++-+|||++++||.|..|||.+++..|+.+....-... .+++........+.+.+
T Consensus 496 gd--l---DsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA 570 (630)
T KOG0742|consen 496 GD--L---DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA 570 (630)
T ss_pred cc--h---hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH
Confidence 32 2 7788889999999999999999999999998865221111 22333323334444444
Q ss_pred HHHhhHhhccccCcchhHHHHHHHH
Q 011578 421 EKETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
... .+..||+|-.++-...
T Consensus 571 kkT------eGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 571 KKT------EGFSGREIAKLVASVQ 589 (630)
T ss_pred Hhc------cCCcHHHHHHHHHHHH
Confidence 433 2567888877765443
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=185.56 Aligned_cols=192 Identities=21% Similarity=0.335 Sum_probs=140.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+..........+. .....+++|+||||||||++|+++|+.+.. .|+.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-------~f~~ln 84 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRA-------HFSSLN 84 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcC-------cceeeh
Confidence 567899999988753222211121 234568999999999999999999997754 566666
Q ss_pred cccccccccccchhhHHHHHHh--------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~--------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
+.... ...+++.++. ....||||||+|.+....+ +.|+..++++.+++|++|+.
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ-----------daLL~~lE~g~IiLI~aTTe 146 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ-----------DALLPWVENGTITLIGATTE 146 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH-----------HHHHHHhcCceEEEEEecCC
Confidence 54211 1112222222 1347999999999987544 78899999999999999988
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
++...+ ++++.+|+ ..+.|++++.+++..+++..+.+.... ++ .....++++++..++... .||.
T Consensus 147 np~~~l---~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~---~g-~~~v~I~deaL~~La~~s-------~GD~ 211 (725)
T PRK13341 147 NPYFEV---NKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERG---YG-DRKVDLEPEAEKHLVDVA-------NGDA 211 (725)
T ss_pred ChHhhh---hhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhh---cC-CcccCCCHHHHHHHHHhC-------CCCH
Confidence 887656 78899997 789999999999999999998753210 01 123567889999999864 7899
Q ss_pred chhHHHHHHHHHH
Q 011578 435 GLVDPMLVNAREN 447 (482)
Q Consensus 435 ~~l~~~~~~a~~~ 447 (482)
|.+.++++.+...
T Consensus 212 R~lln~Le~a~~~ 224 (725)
T PRK13341 212 RSLLNALELAVES 224 (725)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=188.80 Aligned_cols=156 Identities=19% Similarity=0.120 Sum_probs=121.8
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHH--HhCCcHHHHHHHHcCCCCCCcccccCcC---CC----
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVS--AGYNKAEIVKSLLEWPGNDKVELEAQNM---YG---- 85 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---~g---- 85 (482)
+++|+|+..|+.++|+.|| ..|.++|..+.. |+||||+| +..|+.++|++|++ .|++++.+|. .|
T Consensus 105 ~~~~~a~~~~~~e~vk~Ll-~~Gadin~~d~~-g~T~L~~~~a~~~~~~eivklLi~----~Ga~vn~~d~~~~~g~~~~ 178 (661)
T PHA02917 105 IFSYMKSKNVDVDLIKVLV-EHGFDLSVKCEN-HRSVIENYVMTDDPVPEIIDLFIE----NGCSVLYEDEDDEYGYAYD 178 (661)
T ss_pred hHHHHHhhcCCHHHHHHHH-HcCCCCCccCCC-CccHHHHHHHccCCCHHHHHHHHH----cCCCccccccccccccccc
Confidence 3344445555666777666 557888988876 99999954 45789999999999 4677765542 34
Q ss_pred -------ChHHHHHHH-----------cCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCCh--HHHHHHHhhCC
Q 011578 86 -------ETPLHMAAK-----------NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED--YATVKTLLEYN 145 (482)
Q Consensus 86 -------~tpLh~A~~-----------~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~--~~~v~~Ll~~g 145 (482)
.||||+|+. .++.+++++|+++|+|+|.+|.+|+||||+|+ ..|+ .++|++|++ |
T Consensus 179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~----~~g~~~~eivk~Li~-g 253 (661)
T PHA02917 179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI----KSSHIDIDIVKLLMK-G 253 (661)
T ss_pred cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH----HcCCCcHHHHHHHHh-C
Confidence 599999986 46899999999999999999999999999999 6776 489999985 8
Q ss_pred CCcc----ccCCCCCChhhhhhc------C--CCChHHHHHHHhhhHH
Q 011578 146 ADCS----AKDNEGKTPLDHLSN------G--PGSAKLRELLLWHSEE 181 (482)
Q Consensus 146 ad~~----~~d~~g~tpl~~~a~------~--~~~~~~~~lL~~~~~~ 181 (482)
++++ ..|..|.+|+++++. . ....+++++|++.|++
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~ 301 (661)
T PHA02917 254 IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP 301 (661)
T ss_pred CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence 8876 466678888855551 1 1266899999999985
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=180.32 Aligned_cols=224 Identities=21% Similarity=0.356 Sum_probs=169.3
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
-.++..+. .++||+...+.+.+.+ ++...|...+..|..++||.||+|+|||.+|++||..++. ....
T Consensus 483 l~le~~L~~rViGQd~AV~avs~aI-------rraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg----~e~a 551 (786)
T COG0542 483 LNLERRLKKRVIGQDEAVEAVSDAI-------RRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG----DEQA 551 (786)
T ss_pred HHHHHHHhcceeChHHHHHHHHHHH-------HHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC----CCcc
Confidence 34444444 4789998888777653 5566777777777789999999999999999999998862 1125
Q ss_pred eEEeecccc---------ccc---cccc-chhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 278 VTEVQRTDL---------VGE---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 278 ~~~~~~~~~---------~~~---~~g~-~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
++.++-|++ ++. |||. .+..+++.++..+++||+||||++.+| +++|.|||.||+|
T Consensus 552 liR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-----------dV~nilLQVlDdG 620 (786)
T COG0542 552 LIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-----------DVFNLLLQVLDDG 620 (786)
T ss_pred ceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-----------HHHHHHHHHhcCC
Confidence 666666653 332 7885 456788889988899999999999999 8889999999974
Q ss_pred c-------------EEEEEecCchh--HHH-------------------HHhc--CccccCCCcceeeCCCCCHHHHHHH
Q 011578 345 K-------------VVVIFAGYSEP--MKR-------------------VIAS--NEGFCRRVTKFFHFNDFNSEELAKI 388 (482)
Q Consensus 345 ~-------------~~vi~~~~~~~--~~~-------------------~~~~--~~~l~~R~~~~i~~~~~~~~~~~~i 388 (482)
+ .++|+|++--. +.. .+.. .|+|+.|+|.+|.|.+++.+++.+|
T Consensus 621 rLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~I 700 (786)
T COG0542 621 RLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERI 700 (786)
T ss_pred eeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHH
Confidence 3 37777764110 000 0000 2999999999999999999999999
Q ss_pred HHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 389 LHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 389 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
+..++.+...+...++ +...+++++.+.++...+. ....+|.++.+++.-......
T Consensus 701 v~~~L~~l~~~L~~~~--i~l~~s~~a~~~l~~~gyd----~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 701 VDLQLNRLAKRLAERG--ITLELSDEAKDFLAEKGYD----PEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred HHHHHHHHHHHHHhCC--ceEEECHHHHHHHHHhccC----CCcCchHHHHHHHHHHHHHHH
Confidence 9999999887655334 4557799999999998763 355679999998887776543
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=169.92 Aligned_cols=124 Identities=25% Similarity=0.294 Sum_probs=105.1
Q ss_pred CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC----cCCCChHHHHHHHcCCHHHHHHHHhCCCCcccc-ccC
Q 011578 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANN 117 (482)
Q Consensus 43 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~----~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~ 117 (482)
.+...-.+|||+|+..|+.+++++|++ .|++++.+ +..|.||||+|+..++.+++++|+++|||+|.+ +..
T Consensus 28 ~d~~~~~~lL~~A~~~~~~eivk~LL~----~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~ 103 (300)
T PHA02884 28 KNKICIANILYSSIKFHYTDIIDAILK----LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA 103 (300)
T ss_pred cCcCCCCHHHHHHHHcCCHHHHHHHHH----CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC
Confidence 344423467788888899999999999 57778876 468999999999999999999999999999986 568
Q ss_pred CCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHH
Q 011578 118 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (482)
Q Consensus 118 g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL 175 (482)
|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.. +...+..++
T Consensus 104 g~TpLh~Aa----~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~-~~~~~~~~~ 156 (300)
T PHA02884 104 KITPLYISV----LHGCLKCLEILLSYGADINIQTNDMVTPIELALMI-CNNFLAFMI 156 (300)
T ss_pred CCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh-CChhHHHHh
Confidence 999999999 88999999999999999999999999999666554 444455444
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=168.23 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=128.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++++++++..++.... .....+.+++|+||||||||++|+++|+.+.. .+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~-----------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-------~~~~~~~ 63 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK-----------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-------NLKITSG 63 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH-----------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecc
Confidence 57899999999999988754332 11234678999999999999999999998864 3433332
Q ss_pred ccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------ 344 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------------------ 344 (482)
+.... ...+...+.. ..+.||||||++.+.+..+ ..|+..|++.
T Consensus 64 ~~~~~------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~-----------e~l~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 64 PALEK------PGDLAAILTNLEEGDVLFIDEIHRLSPAVE-----------ELLYPAMEDFRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred chhcC------chhHHHHHHhcccCCEEEEehHhhhCHHHH-----------HHhhHHHhhhheeeeeccCccccceeec
Confidence 22111 1122233332 3468999999999986433 3455554432
Q ss_pred --cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 345 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 345 --~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
.+++|++|+.... + .+++++||...+.|++|+.+++.++++..+.... ..++++++..++..
T Consensus 127 ~~~~~li~~t~~~~~--l---~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-----------~~~~~~al~~ia~~ 190 (305)
T TIGR00635 127 LPPFTLVGATTRAGM--L---TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-----------VEIEPEAALEIARR 190 (305)
T ss_pred CCCeEEEEecCCccc--c---CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-----------CCcCHHHHHHHHHH
Confidence 2556666554432 2 6788999988999999999999999998876432 45788899888886
Q ss_pred HhhHhhccccCcchhHHHHHHHHHH
Q 011578 423 ETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
. .|+.|.+.++++.+...
T Consensus 191 ~-------~G~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 191 S-------RGTPRIANRLLRRVRDF 208 (305)
T ss_pred h-------CCCcchHHHHHHHHHHH
Confidence 5 56677777777766543
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=168.21 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=141.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++..++.+..++..... ...++.+++|+||||||||++|+++|++++. .+...+
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-------~~~~~~ 83 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-----------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-------NIRITS 83 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------CeEEEe
Confidence 4788999999999999887543321 1235678999999999999999999998864 344333
Q ss_pred cccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------------------
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------ 343 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------------------ 343 (482)
.+.+. ....+..++.. ..++||||||||.+....+ +.|...|++
T Consensus 84 ~~~~~------~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~-----------e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 84 GPALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPVVE-----------EILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred ccccc------ChHHHHHHHHhcccCCEEEEecHhhcchHHH-----------HHHHHHHHhcceeeeeccCccccceee
Confidence 33221 11233444443 3568999999999975332 233444432
Q ss_pred --CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 344 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 344 --~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
..+++|++|+.... + .+++++||...+.|++|+.+++.+|++..+.... ..++++++..++.
T Consensus 147 ~l~~~~li~at~~~~~--l---~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~ia~ 210 (328)
T PRK00080 147 DLPPFTLIGATTRAGL--L---TSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-----------VEIDEEGALEIAR 210 (328)
T ss_pred cCCCceEEeecCCccc--C---CHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHH
Confidence 12566777655432 2 6778999999999999999999999998877642 4568888998888
Q ss_pred HHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
.+ .++.|.+.++++++...+..+ ....|+.+++.+++..
T Consensus 211 ~~-------~G~pR~a~~~l~~~~~~a~~~---------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 211 RS-------RGTPRIANRLLRRVRDFAQVK---------GDGVITKEIADKALDM 249 (328)
T ss_pred Hc-------CCCchHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHH
Confidence 66 566788888888765543211 1124555555555544
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=182.12 Aligned_cols=221 Identities=18% Similarity=0.257 Sum_probs=158.0
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
.+...+. .++|++.+++.+.+.+.... .+......+..++||+||||||||++|+++|+.++. ++
T Consensus 451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~~-------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-------~~ 516 (758)
T PRK11034 451 NLGDRLKMLVFGQDKAIEALTEAIKMSR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------EL 516 (758)
T ss_pred HHHHHhcceEeCcHHHHHHHHHHHHHHh-------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------Cc
Confidence 3444444 47999999999988754332 233222334567999999999999999999998854 67
Q ss_pred EEeeccccc-----cc-------ccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-
Q 011578 279 TEVQRTDLV-----GE-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG- 344 (482)
Q Consensus 279 ~~~~~~~~~-----~~-------~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~- 344 (482)
+.++.+++. .+ |+|.. +..+.+.+...+.+||||||||++++ ++.+.|++.|++|
T Consensus 517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~ 585 (758)
T PRK11034 517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGT 585 (758)
T ss_pred EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCe
Confidence 777766542 22 34432 34566667777889999999999987 5679999999864
Q ss_pred ------------cEEEEEecCchhH-------------------HHH-HhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 345 ------------KVVVIFAGYSEPM-------------------KRV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 345 ------------~~~vi~~~~~~~~-------------------~~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
..++|+||+...- ..+ -.-.|+|.+|+|.+|.|++++.+++.+|+..+
T Consensus 586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~ 665 (758)
T PRK11034 586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_pred eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence 3457777652100 000 01149999999999999999999999999999
Q ss_pred HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 393 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
+.+..++...++ +...++++++..++...+ .....+|.++.++++-+......
T Consensus 666 l~~~~~~l~~~~--i~l~~~~~~~~~l~~~~~----~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 666 IVELQAQLDQKG--VSLEVSQEARDWLAEKGY----DRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHHHHHHHHCC--CCceECHHHHHHHHHhCC----CCCCCCchHHHHHHHHHHHHHHH
Confidence 988776544444 456789999999997654 22456899999988887765443
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=185.15 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=145.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~ 279 (482)
..++.++|++...+++.+++. .....+++|+||||||||++|+.+|+.+.... ......++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~----------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL----------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh----------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 356778999987666555421 12446899999999999999999999885321 22334577
Q ss_pred Eeeccccc--ccccccchhhHHHHHHhcC----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.++.+.+. .++.|+.+..++++|+.+. +.||||||++.+...+.+.+. ..+-+.|+..++.|.+.+|+|||
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l~~G~l~~IgaTT 324 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPALARGELRTIAATT 324 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHhhCCCeEEEEecC
Confidence 77776665 3688999999999998653 479999999999876542221 23446788899999999999999
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
.+.+...++.+|+|.+|| ..|.+++|+.++..+||+........ .....++++++...+...
T Consensus 325 ~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~-------~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEK-------HHGVLILDEAVVAAVELS 386 (852)
T ss_pred HHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhh-------cCCCeeCHHHHHHHHHHc
Confidence 988877778899999999 68999999999999998766544321 123456778777666644
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=180.52 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=169.4
Q ss_pred hHHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC
Q 011578 197 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 275 (482)
Q Consensus 197 ~~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~ 275 (482)
.+......++. +.|++.+|++|.+++..... ........++|+||||+|||++++.+|+.++.
T Consensus 312 ~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~----------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~------ 375 (784)
T PRK10787 312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSR----------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGR------ 375 (784)
T ss_pred cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh----------cccCCCceEEEECCCCCCHHHHHHHHHHHhCC------
Confidence 44455566665 99999999999988653321 11123456999999999999999999998875
Q ss_pred CCeEEeecccc------c---ccccccchhhHHHHHHhcC--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-
Q 011578 276 DRVTEVQRTDL------V---GEFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 343 (482)
Q Consensus 276 ~~~~~~~~~~~------~---~~~~g~~~~~~~~~~~~a~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~- 343 (482)
+++.++.+.. . ..|+|.....+.+.+..+. ..||||||+|++.+..+. ...+.|++.+|.
T Consensus 376 -~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g-------~~~~aLlevld~~ 447 (784)
T PRK10787 376 -KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRG-------DPASALLEVLDPE 447 (784)
T ss_pred -CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCC-------CHHHHHHHHhccc
Confidence 5666654432 1 2477777777777777653 579999999999876542 123667777764
Q ss_pred ----------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc-cccccccccc-
Q 011578 344 ----------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN-QTEDSLLYGF- 405 (482)
Q Consensus 344 ----------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~-~~~~~~~~~~- 405 (482)
+.+++|+|++. . . .+|+|++|| .+|.|++|+.++..+|++.++.. ..++. ++
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~--~-~---i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~---~l~ 517 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNS--M-N---IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERN---ALK 517 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCC--C-C---CCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHh---CCC
Confidence 56777776433 2 1 399999999 68999999999999999999952 22111 22
Q ss_pred cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 406 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.....++++++..+++++. ....+|.++..+++.++....++..+.. .....|+.+++.+.|.
T Consensus 518 ~~~l~i~~~ai~~ii~~yt-----~e~GaR~LeR~I~~i~r~~l~~~~~~~~--~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 518 KGELTVDDSAIIGIIRYYT-----REAGVRSLEREISKLCRKAVKQLLLDKS--LKHIEINGDNLHDYLG 580 (784)
T ss_pred CCeEEECHHHHHHHHHhCC-----cccCCcHHHHHHHHHHHHHHHHHHhcCC--CceeeecHHHHHHHhC
Confidence 2346789999999998654 3556899999999999888777542211 1235788888887764
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=178.98 Aligned_cols=237 Identities=17% Similarity=0.236 Sum_probs=163.7
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeEEe
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTEV 281 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~~~ 281 (482)
++.++|.+...+++.+.+.. ....++||+||||||||++|+.+|..+.... ......++.+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r----------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR----------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc----------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 45688888887777765321 2456789999999999999999998774322 1223455565
Q ss_pred eccccc--ccccccchhhHHHHHHh---cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchh
Q 011578 282 QRTDLV--GEFVGHTGPKTRRRIKE---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 356 (482)
Q Consensus 282 ~~~~~~--~~~~g~~~~~~~~~~~~---a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~ 356 (482)
+.+.+. .+|.|+.+.+++++|.. ..++||||||+|.+...+...+ ....+.+.|...+..+++.+|++||.+.
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~--g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC--cHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 555554 45788888888888764 4568999999999987653211 1235667777888899999999999998
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc-
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG- 435 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 435 (482)
+...+..||+|.+|| ..|.++.|+.+++.+|++....+... .....++++++........ +..+.+
T Consensus 327 ~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~-------~h~v~i~~~al~~a~~ls~-----ryi~~r~ 393 (758)
T PRK11034 327 FSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAV-----KYINDRH 393 (758)
T ss_pred HHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhh-------ccCCCcCHHHHHHHHHHhh-----ccccCcc
Confidence 877788899999999 58999999999999999987665442 2335667777766554332 122333
Q ss_pred ---hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 436 ---LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 436 ---~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
....++++|+... |+.. .......|+.+|+.+.+...
T Consensus 394 lPdKaidlldea~a~~--~~~~---~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 394 LPDKAIDVIDEAGARA--RLMP---VSKRKKTVNVADIESVVARI 433 (758)
T ss_pred ChHHHHHHHHHHHHhh--ccCc---ccccccccChhhHHHHHHHH
Confidence 4456677776543 2210 00112346777777666543
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-18 Score=164.68 Aligned_cols=259 Identities=16% Similarity=0.208 Sum_probs=163.4
Q ss_pred HHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC-C-CCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK-V-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 198 ~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
...+...+++ ++|++.+++.+...+............... . ......++||+||||||||++|+++|+.++.
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~----- 142 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV----- 142 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC-----
Confidence 3456666665 699999999887653221111110000000 0 0113468999999999999999999987764
Q ss_pred CCCeEEeeccccc-ccccccc-hhhHHHHH-------HhcCCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhc
Q 011578 275 TDRVTEVQRTDLV-GEFVGHT-GPKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMD 342 (482)
Q Consensus 275 ~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~-------~~a~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~ 342 (482)
+|..++++.+. ..|+|+. +..+...+ +.+.++||||||+|++++++.+.+ +-.+..+.+.||+.|+
T Consensus 143 --pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe 220 (413)
T TIGR00382 143 --PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE 220 (413)
T ss_pred --CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh
Confidence 78878877764 3588875 33344443 345678999999999998643221 1123367788888886
Q ss_pred CC---------------cEEEEEecCc----------------------------h---------hH------HHHHh--
Q 011578 343 GG---------------KVVVIFAGYS----------------------------E---------PM------KRVIA-- 362 (482)
Q Consensus 343 ~~---------------~~~vi~~~~~----------------------------~---------~~------~~~~~-- 362 (482)
+. ..++|.|++- + .. +++..
T Consensus 221 G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g 300 (413)
T TIGR00382 221 GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFG 300 (413)
T ss_pred ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHh
Confidence 31 1245555332 0 00 00111
Q ss_pred cCccccCCCcceeeCCCCCHHHHHHHHHHH----HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhH
Q 011578 363 SNEGFCRRVTKFFHFNDFNSEELAKILHIK----MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 438 (482)
Q Consensus 363 ~~~~l~~R~~~~i~~~~~~~~~~~~il~~~----l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 438 (482)
..|+|..|+|.++.|.+++.+++.+|+... +++..+.....+ +...+++++++.+++..+ .....+|.|+
T Consensus 301 ~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~g--i~L~~t~~a~~~Ia~~~~----~~~~GAR~Lr 374 (413)
T TIGR00382 301 LIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDN--VELDFEEEALKAIAKKAL----ERKTGARGLR 374 (413)
T ss_pred hHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC--eEEEECHHHHHHHHHhCC----CCCCCchHHH
Confidence 239999999999999999999999999874 333322222223 445679999999999754 2356789999
Q ss_pred HHHHHHHHHhhhhhcCCCCChhhhhcccHHHHH
Q 011578 439 PMLVNARENLDLRLSFDCLDTDELRTITLEDLE 471 (482)
Q Consensus 439 ~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~ 471 (482)
.++++.+......+-... ......|+.+.+.
T Consensus 375 ~iie~~l~~~m~e~p~~~--~~~~v~i~~~~v~ 405 (413)
T TIGR00382 375 SIVEGLLLDVMFDLPSLE--DLEKVVITKETVL 405 (413)
T ss_pred HHHHHhhHHHHhhCCCCC--CCcEEEECHHHHc
Confidence 999998887644432210 1112356666554
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=156.29 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=140.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.++++.|++.+...|...+.. ...+++|||||||||||+.|+++|.+++... .....+.+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~----------------~~lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~ln 95 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR----------------RILPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELN 95 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh----------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhc
Confidence 5789999999999988875321 2457899999999999999999999997522 2333456677
Q ss_pred cccccccccccchhhHH-HHHHhc---------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEE
Q 011578 283 RTDLVGEFVGHTGPKTR-RRIKEA---------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI 349 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~-~~~~~a---------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi 349 (482)
+++-.+..++....+.. ++.... ...|++|||+|.+....| ++|...||. ..+++.
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq-----------~aLrr~mE~~s~~trFiL 164 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ-----------AALRRTMEDFSRTTRFIL 164 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH-----------HHHHHHHhccccceEEEE
Confidence 77766665544322221 211111 127999999999998555 888888886 445666
Q ss_pred EecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 350 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
.|++...+ .+++.+|+ ..++|+++..+.+...|+.+..+++ .+++.+++..++...
T Consensus 165 Icnylsri------i~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~-----------v~~d~~al~~I~~~S------ 220 (346)
T KOG0989|consen 165 ICNYLSRI------IRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEG-----------VDIDDDALKLIAKIS------ 220 (346)
T ss_pred EcCChhhC------ChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc------
Confidence 67666655 56678899 9999999999999999999888764 567889999998876
Q ss_pred cccCcchhHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARE 446 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~ 446 (482)
.|.-|.....++.+..
T Consensus 221 -~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 221 -DGDLRRAITTLQSLSL 236 (346)
T ss_pred -CCcHHHHHHHHHHhhc
Confidence 5666777777777655
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=166.19 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=137.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+...|..++.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~---------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS---------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 5789999999999988876321 11233489999999999999999999886421110
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...+++++++.- .+...++++.+. .+..|+||||+|+|.. .+.+.||
T Consensus 80 sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALL 142 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALL 142 (484)
T ss_pred HHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHH
Confidence 112344443211 112234444332 2347999999999987 4569999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++|+.. ..+ .|++++|+ ..+.|.+++.+++.+.++..+.++. ..++++++
T Consensus 143 KtLEEPp~~viFILaTte~--~kI---~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg-----------i~~e~eAL 205 (484)
T PRK14956 143 KTLEEPPAHIVFILATTEF--HKI---PETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN-----------VQYDQEGL 205 (484)
T ss_pred HHhhcCCCceEEEeecCCh--hhc---cHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99998 778888876652 233 78899999 8899999999999999999887642 45688999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..+++.. .|+.|+..++++++...
T Consensus 206 ~~Ia~~S-------~Gd~RdAL~lLeq~i~~ 229 (484)
T PRK14956 206 FWIAKKG-------DGSVRDMLSFMEQAIVF 229 (484)
T ss_pred HHHHHHc-------CChHHHHHHHHHHHHHh
Confidence 9888865 68889999999887653
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.9e-19 Score=136.09 Aligned_cols=89 Identities=42% Similarity=0.582 Sum_probs=61.0
Q ss_pred HHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccC
Q 011578 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 131 (482)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~ 131 (482)
||+||..|+.+++++|++ .+.+++. |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ .
T Consensus 1 L~~A~~~~~~~~~~~ll~----~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~ 68 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE----KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA----E 68 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH----TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH----H
T ss_pred CHHHHHcCCHHHHHHHHH----CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH----H
Confidence 577777777777777777 3444443 667777777777777777777777777777777777777777 6
Q ss_pred CChHHHHHHHhhCCCCccccC
Q 011578 132 SEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 132 ~~~~~~v~~Ll~~gad~~~~d 152 (482)
.|+.+++++|+++|++++.+|
T Consensus 69 ~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 69 NGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp TTHHHHHHHHHHTTT-TTSS-
T ss_pred cCCHHHHHHHHHcCCCCCCcC
Confidence 667777777777777777654
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=182.70 Aligned_cols=102 Identities=27% Similarity=0.333 Sum_probs=95.6
Q ss_pred hHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc
Q 011578 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (482)
Q Consensus 50 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~ 129 (482)
++||.|+..|+.+++++|++ .|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~----~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~--- 156 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT----GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE--- 156 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---
Confidence 35889999999999999999 57889999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHhhC-------CCCccccCCCCCChh
Q 011578 130 IRSEDYATVKTLLEY-------NADCSAKDNEGKTPL 159 (482)
Q Consensus 130 ~~~~~~~~v~~Ll~~-------gad~~~~d~~g~tpl 159 (482)
..|+.+++++|+++ |++++..+..|.+|+
T Consensus 157 -~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~ 192 (664)
T PTZ00322 157 -ENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS 192 (664)
T ss_pred -HCCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence 88999999999998 888888888888887
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=169.70 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=136.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
+.|++++|++.+++.|..++.. ...+..+||+||+|||||++|++||+.++.......
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~---------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG---------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 5789999999999999887321 112344699999999999999999999974221111
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..+++++.++- .+...++++++.. +..|+||||+|+|.. ...|.||
T Consensus 78 sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALL 140 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAML 140 (830)
T ss_pred HHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHH
Confidence 12344443321 1123455555542 458999999999976 4459999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
+.|++ ..+++|++|+.. ..+ .+.+++|| ..|.|..++.+++.+.|+.++.++. ..++.+.+
T Consensus 141 KtLEEPP~~v~FILaTtd~--~KI---p~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg-----------I~id~eAL 203 (830)
T PRK07003 141 KTLEEPPPHVKFILATTDP--QKI---PVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER-----------IAFEPQAL 203 (830)
T ss_pred HHHHhcCCCeEEEEEECCh--hhc---cchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456666654432 223 68899999 9999999999999999999887653 35688889
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+++.. .|+.|+..++++++....
T Consensus 204 ~lIA~~A-------~GsmRdALsLLdQAia~~ 228 (830)
T PRK07003 204 RLLARAA-------QGSMRDALSLTDQAIAYS 228 (830)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 8888865 577888888888877543
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=153.83 Aligned_cols=130 Identities=29% Similarity=0.367 Sum_probs=112.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..++.|.+||||||+.|+..+|+.|| ..|+.+|..+-- ..||||+|+.+||.++|+.|++ ..+++|+.|..|+|
T Consensus 29 ~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmg-ddtplhlaaahghrdivqkll~----~kadvnavnehgnt 102 (448)
T KOG0195|consen 29 VGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMG-DDTPLHLAAAHGHRDIVQKLLS----RKADVNAVNEHGNT 102 (448)
T ss_pred cccccCcchhhhhhhcccHHHHHHHH-hcccccccccCC-CCcchhhhhhcccHHHHHHHHH----HhcccchhhccCCC
Confidence 45677999999999999999999888 567778887753 6799999999999999999999 68999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh----hCCCCcccc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL----EYNADCSAK 151 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll----~~gad~~~~ 151 (482)
||||||.-|.-.+++-|+.+||-++..+++|.|||..|- ..+.+.|+ ++|-++|..
T Consensus 103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak--------p~l~~~l~e~aek~gq~~nri 162 (448)
T KOG0195|consen 103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK--------PMLKNTLLEIAEKHGQSPNRI 162 (448)
T ss_pred chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc--------hHHHHHHHHHHHHhCCCCCcc
Confidence 999999999999999999999999999999999998775 33333333 457777743
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=188.35 Aligned_cols=125 Identities=30% Similarity=0.264 Sum_probs=102.2
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc--------------CCCChHHHHHHHcCCHHHHHHHHhCCCCcc
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIE 112 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 112 (482)
.|.||||+||..|+.++|++|+++ |++++.++ ..|.||||+|+..|+.+++++|+++|+|++
T Consensus 127 ~G~TpLhlAa~~~~~eiVklLL~~----GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin 202 (743)
T TIGR00870 127 PGITALHLAAHRQNYEIVKLLLER----GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202 (743)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhC----CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence 499999999999999999999994 56666442 368999999999999999999999999999
Q ss_pred ccccCCCcceeeehhhccCCC---------hHHHHHHHhhCCCCc-------cccCCCCCChhhhhhcCCCChHHHHHHH
Q 011578 113 AKANNGMTPLHLSVWYSIRSE---------DYATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLL 176 (482)
Q Consensus 113 ~~d~~g~tpLh~A~~~~~~~~---------~~~~v~~Ll~~gad~-------~~~d~~g~tpl~~~a~~~~~~~~~~lL~ 176 (482)
.+|..|+||||+|+ ..+ ...+.+++++.++++ +..|.+|.||||+ |+..++.++.++|+
T Consensus 203 ~~d~~g~T~Lh~A~----~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~-A~~~g~~~l~~lLL 277 (743)
T TIGR00870 203 TADSLGNTLLHLLV----MENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL-AAKEGRIVLFRLKL 277 (743)
T ss_pred hHhhhhhHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh-hhhcCCccHHHHHH
Confidence 99999999999999 443 334666777665554 6779999999954 45567788888888
Q ss_pred hhhH
Q 011578 177 WHSE 180 (482)
Q Consensus 177 ~~~~ 180 (482)
+.+.
T Consensus 278 ~~~~ 281 (743)
T TIGR00870 278 AIKY 281 (743)
T ss_pred HHHH
Confidence 7543
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=145.99 Aligned_cols=122 Identities=27% Similarity=0.502 Sum_probs=102.4
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---C-CcEEEEecccccccC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPM 321 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~-~~vl~iDE~d~l~~~ 321 (482)
+||+||||||||++|+.+|+.++. +++.++++++.+.+.+++...+.++|.++ . ++||||||+|.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-------ccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence 689999999999999999998865 89999999999889999999999999875 3 699999999999987
Q ss_pred CCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCchhHHHHHhcCcccc-CCCcceeeCCC
Q 011578 322 QKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNEGFC-RRVTKFFHFND 379 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~~~~~~~~~~~~~l~-~R~~~~i~~~~ 379 (482)
.+.........+++.|+..++. +.+++|++++. .+.+ +|++. +||+..|+||.
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~--~~~i---~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS--PDKI---DPALLRSRFDRRIEFPL 132 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS--GGGS---CHHHHSTTSEEEEEE-S
T ss_pred cccccccccccccceeeecccccccccccceeEEeeCC--hhhC---CHhHHhCCCcEEEEcCC
Confidence 7545667778889999999976 34777777555 3333 88899 99999999873
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=167.32 Aligned_cols=205 Identities=18% Similarity=0.256 Sum_probs=153.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|.+....++.+..... +.....||+.|.+||||..+|++|++ ......+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~--------------A~tdstVLi~GESGTGKElfA~~IH~----~S~R~~~PFIai 302 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI--------------AKTDSTVLILGESGTGKELFARAIHN----LSPRANGPFIAI 302 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh--------------cCCCCcEEEecCCCccHHHHHHHHHh----cCcccCCCeEEE
Confidence 357889999988877777654333 46778999999999999999999999 445567899999
Q ss_pred eccccc-----ccccccch-----hh---HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----
Q 011578 282 QRTDLV-----GEFVGHTG-----PK---TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---- 344 (482)
Q Consensus 282 ~~~~~~-----~~~~g~~~-----~~---~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---- 344 (482)
+|+.+. +.+||... .. -...|+.|.+|.||+|||..+...-| ..||..++++
T Consensus 303 NCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQ-----------aKLLRVLQEkei~r 371 (560)
T COG3829 303 NCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQ-----------AKLLRVLQEKEIER 371 (560)
T ss_pred ecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHH-----------HHHHHHHhhceEEe
Confidence 998653 44555422 11 23578899999999999999987444 8899999863
Q ss_pred ---------cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccc-cccC
Q 011578 345 ---------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGF-KLHS 409 (482)
Q Consensus 345 ---------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~-~~~~ 409 (482)
+|.||+||+.+..+.+... ...|..|+ -..|.+||+- ++++..+...++.+... .+ +...
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~-----~~~~~v~ 446 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSR-----RYGRNVK 446 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHH-----HcCCCcc
Confidence 3689999888776544211 12333365 2234445554 48999999999987653 23 2234
Q ss_pred cccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 410 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.+++++++.+.++.| |||.|+|+|++++++-
T Consensus 447 ~ls~~a~~~L~~y~W------PGNVRELeNviER~v~ 477 (560)
T COG3829 447 GLSPDALALLLRYDW------PGNVRELENVIERAVN 477 (560)
T ss_pred cCCHHHHHHHHhCCC------CchHHHHHHHHHHHHh
Confidence 589999999999999 9999999999999986
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=173.43 Aligned_cols=169 Identities=27% Similarity=0.225 Sum_probs=136.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
-++..|.|.||.||.+|+.+.++.|++. -..++..+.. |.+|||+|++.|+.++|+.|+.+ +..+|..+..|.|
T Consensus 44 ~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~k-g~~plhlaaw~g~~e~vkmll~q----~d~~na~~~e~~t 117 (854)
T KOG0507|consen 44 LQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTK-GILPLHLAAWNGNLEIVKMLLLQ----TDILNAVNIENET 117 (854)
T ss_pred ccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhcc-CcceEEehhhcCcchHHHHHHhc----ccCCCcccccCcC
Confidence 3455899999999999999999988754 4556666755 99999999999999999999984 5778999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC--------ccccCCCCCChh
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD--------CSAKDNEGKTPL 159 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad--------~~~~d~~g~tpl 159 (482)
|||.|++.|+.+++.+|+.+|+|+-.+|..+.|+|-.|+ +.|..++++.|++..-+ -..++..+.+||
T Consensus 118 plhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~----qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~pl 193 (854)
T KOG0507|consen 118 PLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLAS----RFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPL 193 (854)
T ss_pred ccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHH----HhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCc
Confidence 999999999999999999999999999999999888888 77778888887765222 123445667788
Q ss_pred hhhhcCCCChHHHHHHHhhhHHHHHHhh
Q 011578 160 DHLSNGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
|.|..+++.+++..|+..|.+.+..+.
T Consensus 194 -Hlaakngh~~~~~~ll~ag~din~~t~ 220 (854)
T KOG0507|consen 194 -HLAAKNGHVECMQALLEAGFDINYTTE 220 (854)
T ss_pred -chhhhcchHHHHHHHHhcCCCcccccc
Confidence 445556677777788888877766553
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=186.70 Aligned_cols=95 Identities=32% Similarity=0.318 Sum_probs=77.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccc--------------cCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
..|.||||+||..|+.++|++|+++|++++.++ .+|.||||+|+ ..|+.+++++|+++|+|+
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa----~~~~~~iv~lLl~~gadi 201 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA----CLGSPSIVALLSEDPADI 201 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH----HhCCHHHHHHHhcCCcch
Confidence 468999999999999999999999999998653 35899999999 788999999999999999
Q ss_pred cccCCCCCChhhhhhcCCC--------ChHHHHHHHhhhHH
Q 011578 149 SAKDNEGKTPLDHLSNGPG--------SAKLRELLLWHSEE 181 (482)
Q Consensus 149 ~~~d~~g~tpl~~~a~~~~--------~~~~~~lL~~~~~~ 181 (482)
+.+|..|+||||+++..+. ...+..++...++.
T Consensus 202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~ 242 (743)
T TIGR00870 202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK 242 (743)
T ss_pred hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999976666542 22345555555444
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=148.94 Aligned_cols=233 Identities=17% Similarity=0.310 Sum_probs=156.5
Q ss_pred HHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC-CCC-CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 200 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK-VGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 200 ~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
++...+++ ++|++..|+.+.-.+... ..|-..... ... -.-.++||.||.|||||.||+.||+.+..
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNH---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV------- 123 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV------- 123 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhH---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC-------
Confidence 44455554 799999998875432211 111111100 001 13357999999999999999999999987
Q ss_pred CeEEeecccccc-cccccchhhH-HHHHH-------hcCCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC-
Q 011578 277 RVTEVQRTDLVG-EFVGHTGPKT-RRRIK-------EAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG- 343 (482)
Q Consensus 277 ~~~~~~~~~~~~-~~~g~~~~~~-~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~- 343 (482)
||...++..+.. .|+|+...++ .+++. .|+.|||+|||||+++.+..+-+ +-.+..+..+||..+++
T Consensus 124 PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 124 PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 888888888764 4999865554 45543 45669999999999998654322 22455777889999986
Q ss_pred ----------------------CcEEEEEecCchhHHHHHhcC-------------------------------------
Q 011578 344 ----------------------GKVVVIFAGYSEPMKRVIASN------------------------------------- 364 (482)
Q Consensus 344 ----------------------~~~~vi~~~~~~~~~~~~~~~------------------------------------- 364 (482)
..+.+|+.+--..++.++...
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFG 283 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcC
Confidence 124555544323333222111
Q ss_pred --ccccCCCcceeeCCCCCHHHHHHHHH---HHHhccccccccccc-cccCcccHHHHHHHHHHHhhHhhccccCcchhH
Q 011578 365 --EGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 438 (482)
Q Consensus 365 --~~l~~R~~~~i~~~~~~~~~~~~il~---~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 438 (482)
|.|.+|++.+-.+..+|.+++.+||. ..+-++.+..+ ++ .+.-.+++++|.++++... .+...+|.+|
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf--~~d~V~L~F~~~AL~~IA~~A~----~rkTGARGLR 357 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLF--EMDGVELEFTEEALKAIAKKAI----ERKTGARGLR 357 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHh--cccCceEEEcHHHHHHHHHHHH----HhccchhHHH
Confidence 99999999999999999999999984 22222222111 12 3445679999999998764 4566789999
Q ss_pred HHHHHHHHHh
Q 011578 439 PMLVNARENL 448 (482)
Q Consensus 439 ~~~~~a~~~~ 448 (482)
.+++..+...
T Consensus 358 sI~E~~lld~ 367 (408)
T COG1219 358 SIIEELLLDV 367 (408)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=163.75 Aligned_cols=189 Identities=20% Similarity=0.216 Sum_probs=133.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~---------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK---------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 5688999999998888765321 12344589999999999999999999886421110
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...+++++++.- .....++++.+. ....||||||+|.+.. ..++.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHH
Confidence 113445544321 112234443332 2347999999999975 4458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..++. +.+++|++++... .+ .+++.+|+ ..+.|.+++.+++..+++..+.... ..++++++
T Consensus 139 k~LE~p~~~vv~Ilattn~~--kl---~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg-----------i~i~~eal 201 (472)
T PRK14962 139 KTLEEPPSHVVFVLATTNLE--KV---PPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG-----------IEIDREAL 201 (472)
T ss_pred HHHHhCCCcEEEEEEeCChH--hh---hHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 6677776655321 23 78899999 7999999999999999998887542 35688999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .++.|.+.+.++.+...
T Consensus 202 ~~Ia~~s-------~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 202 SFIAKRA-------SGGLRDALTMLEQVWKF 225 (472)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 9998865 57778888888876543
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-19 Score=159.83 Aligned_cols=145 Identities=28% Similarity=0.336 Sum_probs=122.3
Q ss_pred CCHHHHHHHHhhCC--------CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHc
Q 011578 24 GDLLAFQRLLRENP--------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95 (482)
Q Consensus 24 g~~~~v~~ll~~~~--------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~ 95 (482)
-+.+.|...|.... -.+|..|.+ |+|+||||+.++++++|+.||+. .-++++.+|+-|+||+++++..
T Consensus 237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsN-GNTALHYsVSHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA 312 (452)
T KOG0514|consen 237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSN-GNTALHYAVSHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALA 312 (452)
T ss_pred CCHHHHHHHHHHHHhcChHHHHHHhhhhcCC-CCeeeeeeecccchHHHHHHhcc---CcccccccccccccHHHHHHHH
Confidence 45667776654321 235777775 99999999999999999999995 5689999999999999999864
Q ss_pred -----CCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 96 -----GCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 96 -----g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
.+.++|.-|...| |+|++- ..|+|+|++|+ ++|+.++|+.||.+|||+|++|.+|-|+| +.|+..|+.
T Consensus 313 ~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAV----SHGr~d~vk~LLacgAdVNiQDdDGSTAL-MCA~EHGhk 386 (452)
T KOG0514|consen 313 KLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAV----SHGRVDMVKALLACGADVNIQDDDGSTAL-MCAAEHGHK 386 (452)
T ss_pred hhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhhhhh----hcCcHHHHHHHHHccCCCccccCCccHHH-hhhhhhChH
Confidence 4567888888876 677654 57999999999 99999999999999999999999999999 677778899
Q ss_pred HHHHHHHhh
Q 011578 170 KLRELLLWH 178 (482)
Q Consensus 170 ~~~~lL~~~ 178 (482)
+++++|+..
T Consensus 387 EivklLLA~ 395 (452)
T KOG0514|consen 387 EIVKLLLAV 395 (452)
T ss_pred HHHHHHhcc
Confidence 999998854
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=173.54 Aligned_cols=219 Identities=22% Similarity=0.293 Sum_probs=153.6
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
.+...+. .++|++.+++.+...+... ..+...+..+..+++|+||||||||++|++||+.++. ++
T Consensus 447 ~l~~~l~~~v~GQ~~ai~~l~~~i~~~-------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-------~~ 512 (731)
T TIGR02639 447 NLEKNLKAKIFGQDEAIDSLVSSIKRS-------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-------HL 512 (731)
T ss_pred HHHHHHhcceeCcHHHHHHHHHHHHHH-------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-------Ce
Confidence 3444444 4789998888887764322 2333222234456899999999999999999998854 66
Q ss_pred EEeecccccc------------cccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc
Q 011578 279 TEVQRTDLVG------------EFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 279 ~~~~~~~~~~------------~~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 345 (482)
+.++.+++.. .|+|.. +..+.+.++..+.+||||||||++++ .+.+.|++.|+++.
T Consensus 513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYAT 581 (731)
T ss_pred EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccCe
Confidence 7776655321 245542 34567777778889999999999988 56699999998752
Q ss_pred -------------EEEEEecCchh--H----------------HHHH--hcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 346 -------------VVVIFAGYSEP--M----------------KRVI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 346 -------------~~vi~~~~~~~--~----------------~~~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
.++|+|++... + ...+ .-.|+|++|||.+|.|.+++.+++.+|++..
T Consensus 582 ~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~ 661 (731)
T TIGR02639 582 LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKF 661 (731)
T ss_pred eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHH
Confidence 35666654211 0 0000 0158999999999999999999999999999
Q ss_pred HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh
Q 011578 393 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
+.+..++....++ ...++++++..++...+ ....++|.++..++.......
T Consensus 662 L~~l~~~l~~~~~--~l~i~~~a~~~La~~~~----~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 662 VDELSKQLNEKNI--KLELTDDAKKYLAEKGY----DEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred HHHHHHHHHhCCC--eEEeCHHHHHHHHHhCC----CcccCchHHHHHHHHHhHHHH
Confidence 9876544333333 45678999999998643 224568999999888777653
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=157.53 Aligned_cols=182 Identities=20% Similarity=0.237 Sum_probs=128.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++++.+.|+.+.. ....++++|+||||||||++|+++|+++...+. ...+++++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~eln 71 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIAR----------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY--KEAVLELN 71 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC--ccceeeec
Confidence 468899999999998887632 123457999999999999999999999854221 23467777
Q ss_pred cccccccccccchhhHHHHH---Hh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRRI---KE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI 349 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~---~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi 349 (482)
+++..+. ..+++.+ .+ ....|++|||+|.+....| +.|+..|+. ...+++
T Consensus 72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq-----------~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ-----------QALRRTMEIYSNTTRFAL 134 (319)
T ss_pred ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH-----------HHHHHHHhcccCCceEEE
Confidence 7654221 1223222 11 2347999999999987544 566666654 344444
Q ss_pred EecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 350 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
.+++...+ .|++++|+ ..++|++|+.+++...++..++++. ..++++++..++...
T Consensus 135 ~~n~~~~i------~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg-----------i~i~~~~l~~i~~~~------ 190 (319)
T PLN03025 135 ACNTSSKI------IEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK-----------VPYVPEGLEAIIFTA------ 190 (319)
T ss_pred EeCCcccc------chhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc------
Confidence 45443322 67889998 7899999999999999999887753 356788898888765
Q ss_pred cccCcchhHHHHHHH
Q 011578 430 REMNGGLVDPMLVNA 444 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a 444 (482)
.++.|.+.+.++.+
T Consensus 191 -~gDlR~aln~Lq~~ 204 (319)
T PLN03025 191 -DGDMRQALNNLQAT 204 (319)
T ss_pred -CCCHHHHHHHHHHH
Confidence 56777777777743
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=164.63 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=136.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.|..++.. ...+..+||+||||||||++|+++|+.+........
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~---------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER---------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 5789999999999999887431 123456799999999999999999999864221111
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..++++++++- .....++++++.. +..|+||||+|+|.+ ...+.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHH
Confidence 13444444321 1123455555432 347999999999987 3458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+.+|++++.... + .+.+++|+ .++.|.+++.+++.+.++..++++. ..++.+++
T Consensus 140 KtLEEPP~~v~FILaTtd~~k--I---p~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg-----------I~id~eAL 202 (702)
T PRK14960 140 KTLEEPPEHVKFLFATTDPQK--L---PITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ-----------IAADQDAI 202 (702)
T ss_pred HHHhcCCCCcEEEEEECChHh--h---hHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 55666666543322 2 56778899 8999999999999999999988753 45788999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.++++.+...
T Consensus 203 ~~IA~~S-------~GdLRdALnLLDQaIay 226 (702)
T PRK14960 203 WQIAESA-------QGSLRDALSLTDQAIAY 226 (702)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 9998865 57888888888877653
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=166.00 Aligned_cols=188 Identities=15% Similarity=0.210 Sum_probs=133.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC-----CCC--
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----LPT-- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~-----~~~-- 275 (482)
..|++++|++.+++.|...+..- ..+..+||+||+|||||++|+.||+.+..... ...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g---------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ---------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC---------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 57899999999999998874311 12344699999999999999999999975211 000
Q ss_pred ---------------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHH
Q 011578 276 ---------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 276 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
..+++++.++- .+...++++++. .+..|+||||+|+|.. ..
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~A 140 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HA 140 (700)
T ss_pred CcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HH
Confidence 12344443311 112335555443 2347999999999987 45
Q ss_pred HHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 334 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 334 ~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.|.||+.||+ +.+++|++|+... .+ .+.+++|| ..+.|..++.+++.+.++.++.++. ..+
T Consensus 141 aNALLKTLEEPP~~v~FILaTtep~--kL---lpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg-----------i~~ 203 (700)
T PRK12323 141 FNAMLKTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG-----------IAH 203 (700)
T ss_pred HHHHHHhhccCCCCceEEEEeCChH--hh---hhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC-----------CCC
Confidence 5999999998 5666666655432 22 68899999 9999999999999999999887642 345
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+.+++..++... .|+.|+..++++++..
T Consensus 204 d~eAL~~IA~~A-------~Gs~RdALsLLdQaia 231 (700)
T PRK12323 204 EVNALRLLAQAA-------QGSMRDALSLTDQAIA 231 (700)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 777887777654 5777888888877654
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-18 Score=161.87 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=136.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccchh-------hHHHHHHhcCCc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG 308 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~ 308 (482)
....+|+++|++||||+++|++|+... .....+|+.++|+.+... .+|+... .....|+.+.+|
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s----~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLS----KRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhc----CccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCC
Confidence 456789999999999999999999844 335579999999865332 3443211 123458888999
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEecCchhHHHHHh--cCccccCCC-c
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-T 372 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~ 372 (482)
+||||||+.|....| ..|+..++.+. +.+|++++.+....... -.+.|..|+ .
T Consensus 96 tL~Ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~ 164 (329)
T TIGR02974 96 TLFLDELATASLLVQ-----------EKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAF 164 (329)
T ss_pred EEEeCChHhCCHHHH-----------HHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcc
Confidence 999999999998555 77888886543 57787776554322211 135667788 5
Q ss_pred ceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 373 KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 373 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..|.+|++. .+++..+++.++.+.... ++......++++++..+..+.| +||.|+|++++++++...
T Consensus 165 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~ls~~a~~~L~~y~W------PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 165 DVITLPPLRERQEDIMLLAEHFAIRMARE---LGLPLFPGFTPQAREQLLEYHW------PGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhcCCCchhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCcCHHHHHHHHhCCC------CchHHHHHHHHHHHHHhC
Confidence 688999998 589999999998876431 1222214789999999999999 999999999999998764
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-18 Score=164.47 Aligned_cols=207 Identities=21% Similarity=0.252 Sum_probs=158.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
....++|.+...+++++.+..+ +....+||++|++||||..+||+|++ .+....+||+.++|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv--------------A~s~a~VLI~GESGtGKElvAr~IH~----~S~R~~~PFVavNc 200 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV--------------APSDASVLITGESGTGKELVARAIHQ----ASPRAKGPFIAVNC 200 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHh----hCcccCCCceeeec
Confidence 4557899999999998876655 45778999999999999999999998 55566789999999
Q ss_pred cccc-----ccccccchh-----h--HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLV-----GEFVGHTGP-----K--TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~-----~~~~g~~~~-----~--~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
..+. +..+|+... . -...|+.|.+|+||||||..+...-| ..||..++++
T Consensus 201 aAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q-----------~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 201 AAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQ-----------VKLLRVLQEREFERVGG 269 (464)
T ss_pred ccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHH-----------HHHHHHHHcCeeEecCC
Confidence 8654 347776332 2 22478999999999999999987544 8899998863
Q ss_pred ------cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
++.||+||+.+....+... .+.|..|+ -..|++|++- .|++..+++.++++.... +| .-...++.
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~---~~-~~~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAE---LG-RPPKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHH---cC-CCCCCCCH
Confidence 3578888777665544211 24445566 3345555555 399999999999987653 22 33468999
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
++++.+..+.| |||.|+|+|++++++.-..
T Consensus 346 ~a~~~L~~y~W------PGNVREL~N~ver~~il~~ 375 (464)
T COG2204 346 EALAALLAYDW------PGNVRELENVVERAVILSE 375 (464)
T ss_pred HHHHHHHhCCC------ChHHHHHHHHHHHHHhcCC
Confidence 99999999999 9999999999999987653
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=159.76 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=160.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+++++|.+..-+.+++.+..+ +....+||++|++||||+.+|+.|+..... . ..+||+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~--------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r--~-~~~PFI~~ 136 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY--------------APSGLPVLIIGETGTGKELFARLIHALSAR--R-AEAPFIAF 136 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh--------------CCCCCcEEEecCCCccHHHHHHHHHHhhhc--c-cCCCEEEE
Confidence 356778899887777777665442 356788999999999999999999943332 1 67899999
Q ss_pred eccccccc-----cccc-------chhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----
Q 011578 282 QRTDLVGE-----FVGH-------TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----- 344 (482)
Q Consensus 282 ~~~~~~~~-----~~g~-------~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----- 344 (482)
+|+.+... .+|+ ....-..+|+.|.+|+||+|||..|.+..| ..|+..||++
T Consensus 137 NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q-----------~kLl~~le~g~~~rv 205 (403)
T COG1221 137 NCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQ-----------EKLLRVLEEGEYRRV 205 (403)
T ss_pred EHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHH-----------HHHHHHHHcCceEec
Confidence 99875432 4443 222334689999999999999999999666 8888888873
Q ss_pred --------cEEEEEecCchhHHHHHhcCccccC-CCcceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 --------KVVVIFAGYSEPMKRVIASNEGFCR-RVTKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 --------~~~vi~~~~~~~~~~~~~~~~~l~~-R~~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
+|.+|+||+.+.-..++.. ..|.+ |+..+|.+|++.. +|+..+++.+++.+..+ .+..+... ++
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~---l~~~~~~~-~~ 280 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR---LGLPLSVD-SP 280 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH---cCCCCCCC-CH
Confidence 4689999988887766543 35666 7789999999985 88888899999888753 23333332 36
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++..+..+.| +||.|+++|+|++++...
T Consensus 281 ~a~~~L~~y~~------pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 281 EALRALLAYDW------PGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHHhCCC------CCcHHHHHHHHHHHHHHh
Confidence 89999999998 999999999999999886
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.4e-17 Score=160.31 Aligned_cols=189 Identities=17% Similarity=0.195 Sum_probs=139.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.+...+.. ...+.++||+||||+|||++|+.+|+.+......
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~---------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL---------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 5789999999999988865321 1245579999999999999999999988642211
Q ss_pred --------CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 274 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 274 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
....++++++++-. +...++++++.+ +..|++|||+|.|.. .+.+.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence 12345666654311 223455555443 458999999999976 4559999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++++.. ..+ .+.+++|+ ..+.|.+++.+++...++..++++. ..++++++
T Consensus 138 K~LEePp~~v~fIlatte~--~Kl---~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-----------i~i~~eAL 200 (491)
T PRK14964 138 KTLEEPAPHVKFILATTEV--KKI---PVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-----------IEHDEESL 200 (491)
T ss_pred HHHhCCCCCeEEEEEeCCh--HHH---HHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 556666665432 223 56788899 8899999999999999999888753 35688999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..+++.. .|+.|++.+.++.+...
T Consensus 201 ~lIa~~s-------~GslR~alslLdqli~y 224 (491)
T PRK14964 201 KLIAENS-------SGSMRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 9888865 57788888888887754
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=128.78 Aligned_cols=89 Identities=40% Similarity=0.538 Sum_probs=79.4
Q ss_pred hHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcC
Q 011578 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (482)
Q Consensus 17 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g 96 (482)
||+||+.|+.+.++.|+. .+..++. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE-KGADINL-----GNTALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH-TTSTTTS-----SSBHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHH-CcCCCCC-----CCCHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHHHHHcC
Confidence 799999999999999997 4455544 7899999999999999999999 68899999999999999999999
Q ss_pred CHHHHHHHHhCCCCccccc
Q 011578 97 CNEAAKLLLAHGAFIEAKA 115 (482)
Q Consensus 97 ~~~~v~~Ll~~ga~~~~~d 115 (482)
+.+++++|+++|++++.+|
T Consensus 71 ~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 71 NLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHHHHTTT-TTSS-
T ss_pred CHHHHHHHHHcCCCCCCcC
Confidence 9999999999999999875
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.3e-17 Score=162.57 Aligned_cols=189 Identities=15% Similarity=0.177 Sum_probs=135.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.|..++..- ..+..+||+||||||||++|+++|+.+.........
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~---------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ---------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC---------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 57899999999999998874311 133447999999999999999999999753221111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.++++++++- .....++++++.. +..|+||||+|+|.+ .+.+.|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLL 140 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALL 140 (509)
T ss_pred HHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHH
Confidence 2455554321 1223355555432 347999999999987 4458999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++|+.. ..+ .+.+++|+ ..++|.+++.+++...++..++++. ..++++++
T Consensus 141 k~LEepp~~~~fIlattd~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg-----------i~~~~~al 203 (509)
T PRK14958 141 KTLEEPPSHVKFILATTDH--HKL---PVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN-----------VEFENAAL 203 (509)
T ss_pred HHHhccCCCeEEEEEECCh--Hhc---hHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456666665432 222 56689999 8999999999999999999888753 34677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|++.+.++.+...
T Consensus 204 ~~ia~~s-------~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 204 DLLARAA-------NGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHhc
Confidence 8888765 57788888998877543
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=168.91 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=133.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCCCCCC----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR---- 277 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~~~~~---- 277 (482)
..|++++|++.+++.|+..+. .....| +||+||||||||++||++|+.+.........+
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~----------------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALT----------------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHH----------------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 578999999999999887632 123345 58999999999999999999987532111111
Q ss_pred -------------eEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 278 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 278 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
++++++++ .. ....++++.+. .+..|+||||+|+|.. .+.+.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas----~~--kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS----RT--KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEecccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 22232221 01 11234444432 2347999999999987 555999
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
|..|++ +.+++|++|+.... + .+.+++|+ .+++|.+++.+++...++..+.... ..++.++
T Consensus 140 LKtLEEPP~~vrFILaTTe~~k--L---l~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~Eg-----------I~~edeA 202 (944)
T PRK14949 140 LKTLEEPPEHVKFLLATTDPQK--L---PVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQ-----------LPFEAEA 202 (944)
T ss_pred HHHHhccCCCeEEEEECCCchh--c---hHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999997 66767776554332 2 57789999 9999999999999999999887642 4567888
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+..++... .|+.|.+.++++.+..
T Consensus 203 L~lIA~~S-------~Gd~R~ALnLLdQala 226 (944)
T PRK14949 203 LTLLAKAA-------NGSMRDALSLTDQAIA 226 (944)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88888764 5777888888887764
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=175.75 Aligned_cols=193 Identities=21% Similarity=0.239 Sum_probs=146.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++.++|.+...+++.+++. .....+++|+||||||||++|+.+|..+... .......++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~----------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG----------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc----------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 46678999988888887632 2255689999999999999999999988531 1223457888
Q ss_pred eeccccc--ccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
++.+.+. .+|.|+.+.+++++|+.+ .++||||||+|.+....+..++ ..+.+.|...+..|.+.+|++||.+
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 8887765 468899999999999764 3479999999999876543222 2455677788899999999999999
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
++...++.+|++.+|| ..|.++.|+.++...|++.......+ .....++++++..+....
T Consensus 318 ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~-------~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 318 EYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEK-------HHNLSISDKALEAAAKLS 377 (821)
T ss_pred HHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHh
Confidence 9988788899999999 57899999999999999876544321 111225667766655533
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=159.08 Aligned_cols=190 Identities=18% Similarity=0.260 Sum_probs=137.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+.+.|...+.. ...+..+||+||||||||++|+++|+.+........
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~---------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN---------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 5788999999999988765321 124568999999999999999999999975321111
Q ss_pred --------------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHH
Q 011578 276 --------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEAL 334 (482)
Q Consensus 276 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~ 334 (482)
..++++++++- .+...++++++.+ +..|++|||+|.+.. ...
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~------~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~ 145 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASK------TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAF 145 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCC------CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHH
Confidence 12333333210 1234456666544 348999999999975 456
Q ss_pred HHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCccc
Q 011578 335 EEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS 412 (482)
Q Consensus 335 ~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 412 (482)
+.|+..|++ ..+++|++|+.. ..+ .+++++|+ ..++|.+++.+++..+++..++++. ..++
T Consensus 146 naLLk~LEepp~~~vfI~aTte~--~kI---~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg-----------i~ie 208 (507)
T PRK06645 146 NALLKTLEEPPPHIIFIFATTEV--QKI---PATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN-----------LKTD 208 (507)
T ss_pred HHHHHHHhhcCCCEEEEEEeCCh--HHh---hHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC-----------CCCC
Confidence 889999986 556666665432 223 67789999 7899999999999999999998753 3567
Q ss_pred HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 413 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++++..++... .|+.|++.+.++.+....
T Consensus 209 ~eAL~~Ia~~s-------~GslR~al~~Ldkai~~~ 237 (507)
T PRK06645 209 IEALRIIAYKS-------EGSARDAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHHc-------CCCHHHHHHHHHHHHHhh
Confidence 88888888764 688899999999886653
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=157.56 Aligned_cols=210 Identities=22% Similarity=0.229 Sum_probs=156.4
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
+......+|+|.+....++.+.+..+ +.....||+.|.+||||..+||+|++ .+.....||+
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~V--------------A~Sd~tVLi~GETGtGKElvAraIH~----~S~R~~kPfV 278 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVV--------------AKSDSTVLIRGETGTGKELVARAIHQ----LSPRRDKPFV 278 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHH--------------hcCCCeEEEecCCCccHHHHHHHHHh----hCcccCCCce
Confidence 33456778999999888888876655 45778999999999999999999999 4555677999
Q ss_pred Eeeccccc-----ccccccchhhHH-------HHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC---
Q 011578 280 EVQRTDLV-----GEFVGHTGPKTR-------RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--- 344 (482)
Q Consensus 280 ~~~~~~~~-----~~~~g~~~~~~~-------~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--- 344 (482)
.++|+.+. ++.+|+.-.... .-|+.|.+|.||+|||..|...-| -.||..++++
T Consensus 279 ~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQ-----------aKLLRvLQegEie 347 (550)
T COG3604 279 KLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQEGEIE 347 (550)
T ss_pred eeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHH-----------HHHHHHHhhccee
Confidence 99998754 557777332222 357788899999999999988666 8889888764
Q ss_pred ----------cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccC
Q 011578 345 ----------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHS 409 (482)
Q Consensus 345 ----------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~ 409 (482)
+|.||+||+.+-...+.+. ...|..|+ -.-+++||+- .+++.-+...|+++...+ +|. -..
T Consensus 348 RvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~---~gr-~~l 423 (550)
T COG3604 348 RVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRR---LGR-AIL 423 (550)
T ss_pred ecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHh---cCC-ccc
Confidence 3688888777665433211 12333466 1233344444 378888888888887642 232 145
Q ss_pred cccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 410 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.++.++++.+..+.| |||.|+++|+|++|...+
T Consensus 424 ~ls~~Al~~L~~y~w------PGNVRELen~veRavlla 456 (550)
T COG3604 424 SLSAEALELLSSYEW------PGNVRELENVVERAVLLA 456 (550)
T ss_pred ccCHHHHHHHHcCCC------CCcHHHHHHHHHHHHHHh
Confidence 789999999999999 999999999999999976
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-17 Score=158.47 Aligned_cols=207 Identities=17% Similarity=0.210 Sum_probs=150.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|+.. +.....+|+.++|
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~--------------a~~~~pVlI~GE~GtGK~~lA~~iH~~----s~r~~~pfv~v~c 65 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL--------------APLDKPVLIIGERGTGKELIASRLHYL----SSRWQGPFISLNC 65 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHh----CCccCCCeEEEeC
Confidence 3567888887777777665544 245678999999999999999999973 3345679999999
Q ss_pred cccc-----ccccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
..+. ..++|+... .....|+.+.+|+|||||++.|....| ..|+..++.+
T Consensus 66 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~g~ 134 (326)
T PRK11608 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQ-----------EKLLRVIEYGELERVGG 134 (326)
T ss_pred CCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHH-----------HHHHHHHhcCcEEeCCC
Confidence 8763 234554211 123457888999999999999998555 7777777653
Q ss_pred ------cEEEEEecCchhHHHHH--hcCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~--~~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
++.+|++++.+...... .-.+.|..|| ...|.+|++.. +++..+++.++.+.... ++......+++
T Consensus 135 ~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~~s~ 211 (326)
T PRK11608 135 SQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRE---LGLPLFPGFTE 211 (326)
T ss_pred CceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCCCH
Confidence 36777776655432111 1135667788 66889999885 88999999998776431 12222257899
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++..+..+.| +||.++|++++++++...
T Consensus 212 ~al~~L~~y~W------PGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 212 RARETLLNYRW------PGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHHhCCC------CcHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999999998753
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-17 Score=170.88 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=151.3
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.++.++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|+... .....+|+.+++
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s----~r~~~pfv~i~c 255 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVV--------------ARSNSTVLLRGESGTGKELIAKAIHYLS----PRAKRPFVKVNC 255 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEeec
Confidence 4667899988877777765544 2456789999999999999999999843 345569999999
Q ss_pred ccccc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
+.+.. ..+|+... .....|+.+.+|+||||||+.|.+..| ..|+..++.+
T Consensus 256 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 256 AALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ-----------AKLLRVLQEGEFERVGG 324 (534)
T ss_pred CCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH-----------HHHHHHHhcCcEEECCC
Confidence 87532 23443211 112346778899999999999998555 7888888653
Q ss_pred ------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
++.+|++++.+....+.. -.+.|..|+ ...|.+|++. .+++..|++.++.+.... ++ ....+++
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~---~~--~~~~~s~ 399 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRE---NG--RPLTITP 399 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHH---cC--CCCCCCH
Confidence 367888877665442211 124555677 4578899888 689999999999876431 12 2257899
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++..+..+.| +||.|+|++++++++...
T Consensus 400 ~a~~~L~~~~W------PGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 400 SAIRVLMSCKW------PGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999998653
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=120.55 Aligned_cols=105 Identities=26% Similarity=0.379 Sum_probs=90.4
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
...+.|++++|.++.|+..+.++ .++|..- .|++|||||+.+|+.+++++|+. .|++++.+|++|-|||..|+
T Consensus 3 d~~~~W~vkNG~~DeVk~~v~~g-~nVn~~~--ggR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAv 75 (117)
T KOG4214|consen 3 DMSVAWNVKNGEIDEVKQSVNEG-LNVNEIY--GGRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAV 75 (117)
T ss_pred chhHhhhhccCcHHHHHHHHHcc-ccHHHHh--CCcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHH
Confidence 35678999999999999988654 6666665 38999999999999999999998 68899999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCccccccCCCcceeee
Q 011578 94 KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 125 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A 125 (482)
+.||.+||++|++.|||-.....+|.+.+-.+
T Consensus 76 wEGH~~cVklLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 76 WEGHRDCVKLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence 99999999999999999888888887766544
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-17 Score=174.39 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=133.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++.++|.+...+++.+.+. .....+++|+||||||||++|+.+|..+... ......+++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 46778999987666555421 1244689999999999999999999988531 1122457777
Q ss_pred eeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++.+.+. .+|.|+.+..++++|+.. .+.||||||+|.+...+.+++ ...+-+.|...+..|.+.+|+|||.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---~~d~~~~lkp~l~~g~l~~IgaTt~ 316 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHCVGATTL 316 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc---chhHHHHhcchhhcCCCeEEEcCCC
Confidence 7777665 458899999999998752 347999999999987654222 2345577888899999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
+++...+..++++.+||. .|.++.|+.+++.+|++......
T Consensus 317 ~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred HHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 999877788999999995 68899999999999998765543
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=156.30 Aligned_cols=189 Identities=14% Similarity=0.183 Sum_probs=130.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.+...+.. ...+..++|+||||+|||++|+++|+.+.........
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~---------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL---------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc---------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5789999999999988875321 1123447999999999999999999998642111111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+++++++.- .....++++++.. +..|+||||+|.+.. .+.+.|+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence 1233322210 1122344554432 347999999999975 4458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ +.+.+|++++.. ..+ .+++.+|+ ..++|++|+.+++.++++..+++.. ..++++++
T Consensus 141 k~lEe~~~~~~fIl~t~~~--~~l---~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g-----------~~i~~~al 203 (363)
T PRK14961 141 KTLEEPPQHIKFILATTDV--EKI---PKTILSRC-LQFKLKIISEEKIFNFLKYILIKES-----------IDTDEYAL 203 (363)
T ss_pred HHHhcCCCCeEEEEEcCCh--Hhh---hHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 455566654332 233 67889999 8999999999999999999887643 34677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.+...
T Consensus 204 ~~ia~~s-------~G~~R~al~~l~~~~~~ 227 (363)
T PRK14961 204 KLIAYHA-------HGSMRDALNLLEHAINL 227 (363)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888754 57788888888877543
|
|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-17 Score=167.24 Aligned_cols=160 Identities=30% Similarity=0.377 Sum_probs=134.0
Q ss_pred CCCCchHhHHHHH---cCCHHHHHHHHhhCCCCccCC---CCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC--
Q 011578 10 RSAKPATIHGCAQ---SGDLLAFQRLLRENPSLLNER---NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-- 81 (482)
Q Consensus 10 ~~~~~t~l~~a~~---~g~~~~v~~ll~~~~~~~~~~---~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-- 81 (482)
...|.|.||.|.. .++.++++.||+-.|..+|.. +.+.|.||||+|+.+.+.++|++|++. |+|++++
T Consensus 140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~----gADV~aRa~ 215 (782)
T KOG3676|consen 140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA----GADVHARAC 215 (782)
T ss_pred cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc----CCchhhHhh
Confidence 6789999999986 456688999998777666544 455699999999999999999999994 5555533
Q ss_pred -------c--------------CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHH
Q 011578 82 -------N--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140 (482)
Q Consensus 82 -------~--------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~ 140 (482)
| ..|+.||.+||..++.+++++|+++|||++++|.+|+|.||..+ ..-..+|..+
T Consensus 216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lV----i~~~~~My~~ 291 (782)
T KOG3676|consen 216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLV----IHFVTEMYDL 291 (782)
T ss_pred ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHH----HHHHHHHHHH
Confidence 1 25889999999999999999999999999999999999999999 6678999999
Q ss_pred HhhCCCC--ccccCCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 141 LLEYNAD--CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 141 Ll~~gad--~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
++++|++ ...+|..|.||| -.|+.-+..+|...+++.
T Consensus 292 ~L~~ga~~l~~v~N~qgLTPL-tLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 292 ALELGANALEHVRNNQGLTPL-TLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHhcCCCccccccccCCCChH-HHHHHhhhHHHHHHHHHh
Confidence 9999999 899999999999 445555666665555544
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-17 Score=166.80 Aligned_cols=222 Identities=21% Similarity=0.277 Sum_probs=147.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~~ 279 (482)
..|++++|++...+.+...+ ....+.+++|+||||||||++|+++++........ ...+|+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~i----------------a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKV----------------ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred CcHHhceeCcHHHHHHHHHH----------------hcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 56788999998877665431 12245689999999999999999999877432211 346788
Q ss_pred Eeeccccc-------ccccccchhh-----------------HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHH
Q 011578 280 EVQRTDLV-------GEFVGHTGPK-----------------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE 335 (482)
Q Consensus 280 ~~~~~~~~-------~~~~g~~~~~-----------------~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~ 335 (482)
.+++..+. ..++|..... ....+..+.++||||||++.|.+..| .
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q-----------~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ-----------N 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-----------H
Confidence 88876542 1233321110 11234566789999999999987544 5
Q ss_pred HHHhhhcCC------------------------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHH
Q 011578 336 EIMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 385 (482)
Q Consensus 336 ~ll~~l~~~------------------------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 385 (482)
.|+..|+.+ .+++|++|+.++. .+ +|++++|| ..+.|++++.+++
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-~l---~~aLrSR~-~~i~~~pls~edi 358 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-EI---NPALRSRC-AEVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc-cc---CHHHHhce-eEEEeCCCCHHHH
Confidence 555555432 2566666665543 22 78899999 5789999999999
Q ss_pred HHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcc
Q 011578 386 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 465 (482)
Q Consensus 386 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i 465 (482)
..|++..+.+.. ..++++++..+..+.| .+|...++++.+......+... .........|
T Consensus 359 ~~Il~~~a~~~~-----------v~ls~eal~~L~~ys~--------~gRraln~L~~~~~~~~~~~~~-~~~~~~~~~I 418 (615)
T TIGR02903 359 ALIVLNAAEKIN-----------VHLAAGVEELIARYTI--------EGRKAVNILADVYGYALYRAAE-AGKENDKVTI 418 (615)
T ss_pred HHHHHHHHHHcC-----------CCCCHHHHHHHHHCCC--------cHHHHHHHHHHHHHHHHHHHHH-hccCCCCeeE
Confidence 999999887532 2467788888877654 3466667887776554333220 0011223579
Q ss_pred cHHHHHHHHHH
Q 011578 466 TLEDLEAGLKL 476 (482)
Q Consensus 466 ~~~d~~~al~~ 476 (482)
+.+|+.++++.
T Consensus 419 ~~edv~~~l~~ 429 (615)
T TIGR02903 419 TQDDVYEVIQI 429 (615)
T ss_pred CHHHHHHHhCC
Confidence 99999998864
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-16 Score=168.12 Aligned_cols=218 Identities=19% Similarity=0.302 Sum_probs=155.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|++.+.+.+...+... ..+...+..+...++|+||||||||++|++||+.+... ..+++.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~-------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~----~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS-------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD----EDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHH-------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----CCcEEEEechh
Confidence 35899999988888765432 22222223345679999999999999999999987532 24677777665
Q ss_pred ccc------------cccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------
Q 011578 286 LVG------------EFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------- 345 (482)
Q Consensus 286 ~~~------------~~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 345 (482)
+.. .|+|.. ...+.+.+...+++|||||||+++.+ .+.+.|++.|++|.
T Consensus 634 ~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 634 YMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred hcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCceecCCCe
Confidence 321 245543 34566667767789999999999988 56699999997642
Q ss_pred ------EEEEEecCchhH--HH-------------H---Hh--cCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccc
Q 011578 346 ------VVVIFAGYSEPM--KR-------------V---IA--SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 399 (482)
Q Consensus 346 ------~~vi~~~~~~~~--~~-------------~---~~--~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~ 399 (482)
.+||+|++...- .. + +. -.|.|..|+|.++.|.+++.+++.+|+...+....++
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 357777654111 00 0 00 1488999999999999999999999999998866543
Q ss_pred cccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 400 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
....++ ...++++++..++...| ...+|+|.|++++++.+.....+
T Consensus 783 l~~~~~--~l~i~~~a~~~L~~~~~----~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 783 LAERKI--TLELSDAALDFLAEAGY----DPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHHCCC--eecCCHHHHHHHHHhCC----CCCCCchhHHHHHHHHHHHHHHH
Confidence 322333 46789999999999765 23688999999999988765443
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=160.29 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=136.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.|..++.. ...+..+||+||+|||||++|+++|+.+.........
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~---------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE---------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 5789999999999999887431 1234568999999999999999999998653221111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+++++.++ +.....++++++. .+..|+||||+|.|.. .+.+.|+
T Consensus 78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALL 140 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAML 140 (709)
T ss_pred HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHH
Confidence 123333221 1122346666653 2447999999998875 4558899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++++... .+ .+.+++|+ ..|.|+.++.+++...++..++++. ..++.+++
T Consensus 141 KtLEEPp~~v~fILaTtd~~--kL---~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg-----------i~id~eAL 203 (709)
T PRK08691 141 KTLEEPPEHVKFILATTDPH--KV---PVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK-----------IAYEPPAL 203 (709)
T ss_pred HHHHhCCCCcEEEEEeCCcc--cc---chHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHH
Confidence 99986 5566666553322 22 56778998 8899999999999999999988753 35688899
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..+++.. .|+.|.+.++++.++..
T Consensus 204 ~~Ia~~A-------~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 204 QLLGRAA-------AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 9998876 58889999999887764
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=171.99 Aligned_cols=191 Identities=19% Similarity=0.243 Sum_probs=141.6
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~~ 280 (482)
.++.++|.+...+++.+.+. .....+++|+||||||||++++.+|..+.... .....+++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 45678999987666665421 22456789999999999999999999874311 112346777
Q ss_pred eeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++.+.+. .+|.|+.+..++++|+.. .+.||||||+|.+...+...+ ...+.+.|...+..+.+.+|++||.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~~~Lk~~l~~g~i~~IgaTt~ 311 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---AMDAGNMLKPALARGELHCIGATTL 311 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc---hhHHHHHhchhhhcCceEEEEeCcH
Confidence 7766664 468898888999998764 358999999999986443221 2345677888888999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
+++...+..+|++.+|| ..|.++.|+.+++..|++....+... .....++++++.....
T Consensus 312 ~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~-------~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 312 DEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEV-------HHGVRITDPAIVAAAT 370 (852)
T ss_pred HHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhcc-------ccCCCCCHHHHHHHHH
Confidence 99987778899999999 56899999999999999887665432 2233445566555543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=160.70 Aligned_cols=188 Identities=16% Similarity=0.224 Sum_probs=134.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTD----- 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~~~~----- 276 (482)
..|++++|++.+++.|...+. .....| +||+||+|+|||++|+++|+.+.........
T Consensus 13 ~~f~divGQe~vv~~L~~~l~----------------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALD----------------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 578999999999998887632 122334 6999999999999999999999863211111
Q ss_pred ------------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 277 ------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 277 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
.++++++++- . ....++++.+.. +..|+||||+|+|.. ...|.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~----~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR----T--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 2344443320 1 122344444332 347999999999987 455999
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
|..|++ +.+++|++|+... .+ .+.+++|+ ..|+|.+++.+++...++..+.++. ..++.++
T Consensus 140 LKtLEEPp~~v~FIL~Tt~~~--kL---l~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~-----------i~~e~~a 202 (647)
T PRK07994 140 LKTLEEPPEHVKFLLATTDPQ--KL---PVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ-----------IPFEPRA 202 (647)
T ss_pred HHHHHcCCCCeEEEEecCCcc--cc---chHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999998 6677777755433 22 67889998 9999999999999999999887642 3557788
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+..++... .|+.|...++++.+...
T Consensus 203 L~~Ia~~s-------~Gs~R~Al~lldqaia~ 227 (647)
T PRK07994 203 LQLLARAA-------DGSMRDALSLTDQAIAS 227 (647)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 88887764 57788888888877654
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=161.87 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=117.0
Q ss_pred chHhHHHHHcC--CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC--ChHH
Q 011578 14 PATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG--ETPL 89 (482)
Q Consensus 14 ~t~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~tpL 89 (482)
+-.||.-...+ +.++++.+++++.. .+. . .+..++|.||..|+.++|++|++ .|++++.+|..| .|||
T Consensus 307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~-~~r--~-~~~n~~~~Aa~~gn~eIVelLIs----~GADIN~kD~~g~~~TpL 378 (631)
T PHA02792 307 QDLLSEYVSYHTVYINVIKCMIDEGAT-LYR--F-KHINKYFQKFDNRDPKVVEYILK----NGNVVVEDDDNIINIMPL 378 (631)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHCCCc-ccc--C-CcchHHHHHHHcCCHHHHHHHHH----cCCchhhhcCCCCChhHH
Confidence 34566666666 67889988866444 431 2 26778999999999999999999 578899888775 6999
Q ss_pred HHHHHcCCH---HHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 90 HMAAKNGCN---EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 90 h~A~~~g~~---~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
|+|+..... +++++|+++|+|+|.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa----~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCI----ESHSVSLVEWLIDNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 998877664 4689999999999999999999999999 8889999999999999999999999999977654
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=159.40 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=133.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.+...+..- ..+..+||+||||||||++|+++|+.+.........
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~---------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ---------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 57889999999999888763211 123448999999999999999999988642211111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+++++... ..| ...++++++. .+..|+||||+|++.. .+.+.|+
T Consensus 78 sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence 233333211 111 1223344332 2447999999999986 4558999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++|+. ...+ .+.+++|+ ..++|.+++.+++...++..++++. ..++++++
T Consensus 141 K~LEepp~~v~fIL~Ttd--~~ki---l~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-----------i~~e~~Al 203 (546)
T PRK14957 141 KTLEEPPEYVKFILATTD--YHKI---PVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-----------INSDEQSL 203 (546)
T ss_pred HHHhcCCCCceEEEEECC--hhhh---hhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99998 45666666543 2223 56689999 9999999999999999999887643 35688889
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.++..
T Consensus 204 ~~Ia~~s-------~GdlR~alnlLek~i~~ 227 (546)
T PRK14957 204 EYIAYHA-------KGSLRDALSLLDQAISF 227 (546)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 9888765 57788888999887754
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=165.05 Aligned_cols=168 Identities=12% Similarity=0.029 Sum_probs=128.7
Q ss_pred CccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHH-HhCCcHHHHHHHHcCCCCCCccccc
Q 011578 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVS-AGYNKAEIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A-~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (482)
+.|.++--.+.+.||||.-..+.+...=..++..-+..++..+.. |.+|+|+- +..|+.++|++|+. .|+++|.
T Consensus 26 ~~g~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~-~~~~~~~~~s~n~~lElvk~LI~----~GAdvN~ 100 (631)
T PHA02792 26 ESGANPLYEYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNIN-DFDIFEYLCSDNIDIELLKLLIS----KGLEINS 100 (631)
T ss_pred HcCCCcccccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccC-CccHHHHHHHhcccHHHHHHHHH----cCCCccc
Confidence 456666667888899998876665432222221223334455544 77899865 45789999999999 5888999
Q ss_pred CcCCCChHHHHHHH-cCCHHHHHHHHhCCCCcc------------------------------------ccccCCCccee
Q 011578 81 QNMYGETPLHMAAK-NGCNEAAKLLLAHGAFIE------------------------------------AKANNGMTPLH 123 (482)
Q Consensus 81 ~~~~g~tpLh~A~~-~g~~~~v~~Ll~~ga~~~------------------------------------~~d~~g~tpLh 123 (482)
++..+.||||+|+. .++.+++++|+++||+++ ..|..|.||||
T Consensus 101 ~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~ 180 (631)
T PHA02792 101 IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLY 180 (631)
T ss_pred ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHH
Confidence 99989999999966 699999999999998643 34557999999
Q ss_pred eehhhccCCC-------hHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC-ChHHHHHHHhh
Q 011578 124 LSVWYSIRSE-------DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG-SAKLRELLLWH 178 (482)
Q Consensus 124 ~A~~~~~~~~-------~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~-~~~~~~lL~~~ 178 (482)
+|+ ..+ +.+++++|+++|++++.+|..|.||||+++.... ..+++++|...
T Consensus 181 ~~i----~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 181 YYI----ITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS 239 (631)
T ss_pred HHH----hhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence 999 555 7999999999999999999999999977766542 56788888764
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-17 Score=162.89 Aligned_cols=155 Identities=29% Similarity=0.323 Sum_probs=137.1
Q ss_pred chHhHHHHHcCCHHHHHHHHhhC------------CCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 14 PATIHGCAQSGDLLAFQRLLREN------------PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.+-|..||..|+.+.+..+|... ...+|..|. +|.|.||.||.+|+..++++|++ ..+.++..
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~-~gfTalhha~Lng~~~is~llle----~ea~ldl~ 78 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDY-SGFTLLHHAVLNGQNQISKLLLD----YEALLDLC 78 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCc-cchhHHHHHHhcCchHHHHHHhc----chhhhhhh
Confidence 45688999999999999999642 244566666 49999999999999999999999 46778888
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhh
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~ 161 (482)
|..|.+|||+|++.|+.+++++|+.++..+|..+..|.||||.|+ ..||.+++.+|+++|+|+-.+|..+.|+++.
T Consensus 79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa----qhgh~dvv~~Ll~~~adp~i~nns~~t~ldl 154 (854)
T KOG0507|consen 79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA----QHGHLEVVFYLLKKNADPFIRNNSKETVLDL 154 (854)
T ss_pred hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh----hhcchHHHHHHHhcCCCccccCcccccHHHH
Confidence 899999999999999999999999999999999999999999999 9999999999999999999999999999954
Q ss_pred hhcCCCChHHHHHHHhh
Q 011578 162 LSNGPGSAKLRELLLWH 178 (482)
Q Consensus 162 ~a~~~~~~~~~~lL~~~ 178 (482)
|++-+...++.+|.+.
T Consensus 155 -A~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 155 -ASRFGRAEVVQMLLQK 170 (854)
T ss_pred -HHHhhhhHHHHHHhhh
Confidence 5556677777777655
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-16 Score=158.50 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=134.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL-------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~-------- 273 (482)
..|++++|++.+++.|+.++. .....| +||+||+|||||++|+++|+.+......
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~----------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALD----------------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 578999999999999988742 123445 7999999999999999999988742111
Q ss_pred -----------CCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHH
Q 011578 274 -----------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE 335 (482)
Q Consensus 274 -----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~ 335 (482)
....+++++++... +-..++++.+. ++..|++|||+|.|.. .+.|
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 11223444432211 11233333322 3458999999999987 4559
Q ss_pred HHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 336 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 336 ~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
.||..|++ ..+++|++|+.. ..+ .+++++|+ ..++|..++.+++.+.++.+++++. ..++.
T Consensus 137 ALLK~LEEpp~~~~fIL~tte~--~kl---l~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg-----------i~i~~ 199 (584)
T PRK14952 137 ALLKIVEEPPEHLIFIFATTEP--EKV---LPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG-----------VVVDD 199 (584)
T ss_pred HHHHHHhcCCCCeEEEEEeCCh--Hhh---HHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence 99999987 567777765433 233 67889997 8999999999999999999888753 34677
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+++..++... .|+.|++.++++.+...
T Consensus 200 ~al~~Ia~~s-------~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 200 AVYPLVIRAG-------GGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHhc
Confidence 8887777654 57788888998887543
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=154.67 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=132.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.|..++..- ..+..+||+||||||||++|+++|+.+...+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~---------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG---------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 46889999999999998874321 123345999999999999999999999753311
Q ss_pred -------CCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 274 -------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 274 -------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
....++++++++- .+...++++.+. ....||+|||+|.+.. ..++.|+.
T Consensus 76 c~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLLk 138 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALLK 138 (504)
T ss_pred hHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHHH
Confidence 1123445544311 112234444322 2347999999998864 45688999
Q ss_pred hhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 340 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 340 ~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
.|+. ..+++|++++.. ..+ .+.+.+|+ ..++|++|+.+++...++..+++.. ..++++++.
T Consensus 139 ~LEep~~~t~~Il~t~~~--~kl---~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg-----------i~i~~~Al~ 201 (504)
T PRK14963 139 TLEEPPEHVIFILATTEP--EKM---PPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG-----------REAEPEALQ 201 (504)
T ss_pred HHHhCCCCEEEEEEcCCh--hhC---ChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence 9987 455555554322 222 67788898 6899999999999999999988753 345888898
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.++... .|+.|.+.+.++.+..
T Consensus 202 ~ia~~s-------~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 202 LVARLA-------DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHc-------CCCHHHHHHHHHHHHh
Confidence 888865 5788888888888754
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-16 Score=157.71 Aligned_cols=189 Identities=17% Similarity=0.234 Sum_probs=135.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.+...+..- ..+..+||+||+|||||++|+.+|+.+......
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~---------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQG---------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 57899999999999998874311 234458999999999999999999998643211
Q ss_pred --------CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 274 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 274 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
....++++++++ +.+...++++.+.+ +..|+||||+|.|.. .+.+.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 112344444422 12233455555432 348999999999976 4568999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ ..+++|++|+.. ..+ .+.+++|+ ..+.|++|+.+++...++..+++.. ..++++++
T Consensus 141 KtLEepp~~~ifIlatt~~--~ki---~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg-----------i~i~~~al 203 (559)
T PRK05563 141 KTLEEPPAHVIFILATTEP--HKI---PATILSRC-QRFDFKRISVEDIVERLKYILDKEG-----------IEYEDEAL 203 (559)
T ss_pred HHhcCCCCCeEEEEEeCCh--hhC---cHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456666665432 233 67889999 7899999999999999999887653 34577888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|++.+.++.+...
T Consensus 204 ~~ia~~s-------~G~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 204 RLIARAA-------EGGMRDALSILDQAISF 227 (559)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888754 57788888888877654
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=149.86 Aligned_cols=189 Identities=20% Similarity=0.211 Sum_probs=126.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..+.. ....++++|+||||||||++|+++++++...+ ...+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~ 73 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVD----------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFN 73 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEec
Confidence 458889999999999888632 12334799999999999999999999886322 123566777
Q ss_pred cccccccc-------------ccc-------chhhHHHHHHh--------cCCcEEEEecccccccCCCCCCChhHHHHH
Q 011578 283 RTDLVGEF-------------VGH-------TGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEAL 334 (482)
Q Consensus 283 ~~~~~~~~-------------~g~-------~~~~~~~~~~~--------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~ 334 (482)
++++.... .+. ....+++++.. +...+|||||+|.+.... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~-----------~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA-----------Q 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH-----------H
Confidence 66543211 111 01122332221 234799999999886532 2
Q ss_pred HHHHhhhc---CCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 335 EEIMSVMD---GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 335 ~~ll~~l~---~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
+.|...++ ....+|++++++.. + .+++.+|+ ..++|++|+.+++..+++..+.+.. ..+
T Consensus 143 ~~L~~~le~~~~~~~~Il~~~~~~~---~---~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~-----------~~~ 204 (337)
T PRK12402 143 QALRRIMEQYSRTCRFIIATRQPSK---L---IPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEG-----------VDY 204 (337)
T ss_pred HHHHHHHHhccCCCeEEEEeCChhh---C---chhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 44555554 33444444433321 2 56788898 7899999999999999999887643 347
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
+.+++..++... ++|.|.+.+.++.+.
T Consensus 205 ~~~al~~l~~~~-------~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 205 DDDGLELIAYYA-------GGDLRKAILTLQTAA 231 (337)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence 889999999865 577777777776654
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=156.78 Aligned_cols=189 Identities=17% Similarity=0.176 Sum_probs=133.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
+.|++++|++.+++.|..++..- ..+..+||+||+|||||++|+++|+.+...+...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~---------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ---------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 57899999999999888874311 1234469999999999999999999997532110
Q ss_pred --------------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHH
Q 011578 275 --------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 275 --------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
...++++++++- .....++++++.+ +..|++|||+|+|.. ..
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TA 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HH
Confidence 012333333211 1123456665542 347999999999987 44
Q ss_pred HHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 334 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 334 ~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.|.|+..|++ +.+++|++|+... .+ .+.+++|+ ..|+|..++.+++.+.++..+.++. ..+
T Consensus 141 ~NaLLKtLEEPP~~~~fIL~Ttd~~--ki---l~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg-----------i~i 203 (618)
T PRK14951 141 FNAMLKTLEEPPEYLKFVLATTDPQ--KV---PVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN-----------VPA 203 (618)
T ss_pred HHHHHHhcccCCCCeEEEEEECCch--hh---hHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 5899999987 5556666543322 12 45688998 9999999999999999999887653 356
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+.+++..++... .|+.|.+.++++++...
T Consensus 204 e~~AL~~La~~s-------~GslR~al~lLdq~ia~ 232 (618)
T PRK14951 204 EPQALRLLARAA-------RGSMRDALSLTDQAIAF 232 (618)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 788888888865 57788888888776654
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=164.22 Aligned_cols=223 Identities=17% Similarity=0.285 Sum_probs=154.6
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
.+...+. .++|++.+++.+...+... ..+...+..+...++|+||||||||++|++||+.+... ..++
T Consensus 502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~----~~~~ 570 (821)
T CHL00095 502 HMEETLHKRIIGQDEAVVAVSKAIRRA-------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS----EDAM 570 (821)
T ss_pred HHHHHhcCcCcChHHHHHHHHHHHHHH-------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----ccce
Confidence 4444444 4789999999888764332 22332233344568999999999999999999987532 2356
Q ss_pred EEeeccccc------------ccccccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc
Q 011578 279 TEVQRTDLV------------GEFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 279 ~~~~~~~~~------------~~~~g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 345 (482)
+.++.+++. ..|+|..+ ..+.+.+...+.+||||||+|++++ .+.+.|++.|++|.
T Consensus 571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~ 639 (821)
T CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGR 639 (821)
T ss_pred EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCc
Confidence 666655432 12555433 4567777777889999999999987 66699999998742
Q ss_pred -------------EEEEEecCchhH-----------------------HHH---H------hcCccccCCCcceeeCCCC
Q 011578 346 -------------VVVIFAGYSEPM-----------------------KRV---I------ASNEGFCRRVTKFFHFNDF 380 (482)
Q Consensus 346 -------------~~vi~~~~~~~~-----------------------~~~---~------~~~~~l~~R~~~~i~~~~~ 380 (482)
.++|+|++...- ..+ + .-.|+|++|+|.+|.|.++
T Consensus 640 ~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL 719 (821)
T CHL00095 640 LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQL 719 (821)
T ss_pred eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCC
Confidence 466666542110 000 0 0138899999999999999
Q ss_pred CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 381 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 381 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
+.+++.+|++..+.+..++.... .+...++++++..++...+ ....++|.|+.++++-......
T Consensus 720 ~~~~l~~Iv~~~l~~l~~rl~~~--~i~l~~~~~~~~~La~~~~----~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 720 TKNDVWEIAEIMLKNLFKRLNEQ--GIQLEVTERIKTLLIEEGY----NPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC--CcEEEECHHHHHHHHHhcC----CCCCChhhHHHHHHHHHHHHHH
Confidence 99999999999998875543333 3445679999999998643 1245678898888877765443
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=160.63 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=145.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH-c---CCCCCCCeE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM-V---GILPTDRVT 279 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~-~---~~~~~~~~~ 279 (482)
.|++++|.+...+.+++.+..+ +....+||++|++||||+++|++|++.+.. . +.....||+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~--------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv 282 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY--------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 282 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeE
Confidence 5778999998877777765433 346678999999999999999999986221 0 334567999
Q ss_pred Eeeccccc-----ccccccchh--------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-
Q 011578 280 EVQRTDLV-----GEFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 345 (482)
Q Consensus 280 ~~~~~~~~-----~~~~g~~~~--------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~- 345 (482)
.++|+.+. +..+|+... .-...|+.|.+|+||||||+.|.+..| ..|+..++++.
T Consensus 283 ~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~kLl~~L~e~~~ 351 (538)
T PRK15424 283 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ-----------TRLLRVLEEKEV 351 (538)
T ss_pred EeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHH-----------HHHHhhhhcCeE
Confidence 99998753 335554221 122478899999999999999998655 88888887643
Q ss_pred ------------EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhcccccccccccccc
Q 011578 346 ------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLH 408 (482)
Q Consensus 346 ------------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~ 408 (482)
+.+|++|+.+....+-. -.+.|..|+ ...|.+|++.. +++..+++.++++.... ..
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~-------~~ 424 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAA-------LS 424 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHH-------cC
Confidence 36788776665332211 023344466 45777888774 88999999999874321 11
Q ss_pred CcccHHHH-------HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 409 SSCSMDAI-------AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 409 ~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++.+++ ..+..+.| |||.|+|+|++++++..
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~W------PGNvREL~nvier~~i~ 464 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDW------PGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCC------CchHHHHHHHHHHHHHh
Confidence 22444444 77888888 99999999999998874
|
|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=130.15 Aligned_cols=119 Identities=44% Similarity=0.669 Sum_probs=72.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.||||+|+..++.+++++|+++ +.+.+..+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+
T Consensus 7 g~t~l~~a~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~- 81 (126)
T cd00204 7 GRTPLHLAASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA- 81 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH-
Confidence 66666666666666666666662 3444555666666666666666666666666666666666666666666666
Q ss_pred hccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHH
Q 011578 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL 175 (482)
..++.+++++|++.|.+++..+..|.||++.+... +...+.++|
T Consensus 82 ---~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~L 125 (126)
T cd00204 82 ---RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN-GHLEVVKLL 125 (126)
T ss_pred ---HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc-CCHHHHHHh
Confidence 55566666666666666666666666666433332 444444443
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=159.78 Aligned_cols=204 Identities=18% Similarity=0.161 Sum_probs=150.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|++.. .....||+.++
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~--------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S----~r~~~pfv~in 270 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY--------------ARSDATVLILGESGTGKELVAQAIHQLS----GRRDFPFVAIN 270 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCcCHHHHHHHHHHhc----CcCCCCEEEec
Confidence 45788999998877777765433 3466789999999999999999999843 34567999999
Q ss_pred cccccc-----cccccchh--------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc----
Q 011578 283 RTDLVG-----EFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---- 345 (482)
Q Consensus 283 ~~~~~~-----~~~g~~~~--------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---- 345 (482)
|..+.. ..+|+... .-...|+.+.+|+||||||+.|....| ..|+..++++.
T Consensus 271 C~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 271 CGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQ-----------TRLLRVLEEREVVRV 339 (526)
T ss_pred cccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHH-----------HHHHHHHhcCcEEec
Confidence 986532 35554221 123578889999999999999998655 78888887643
Q ss_pred ---------EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcc
Q 011578 346 ---------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 346 ---------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
+.+|++++.+....+-. -.+.|..|+ ...|.+|++.. +++..+++.++.+... .....+
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~-------~~~~~~ 412 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAA-------ALRLPD 412 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHH-------HcCCCC
Confidence 36777776655432211 123445577 46888888885 8999999999987643 112347
Q ss_pred cHHHHHH-------HHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 412 SMDAIAA-------LIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 412 ~~~~l~~-------~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++++.. +..+.| |||.|+|++++++++...
T Consensus 413 ~~~a~~~~~~~~~~L~~y~W------PGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPW------PGNVRELRNLVERLALEL 450 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCC------CchHHHHHHHHHHHHHhc
Confidence 8888887 899999 999999999999998753
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=155.32 Aligned_cols=184 Identities=19% Similarity=0.265 Sum_probs=125.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+++++..|+.... ...++.++||+||||||||++|+++|++++. .+++++
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~------------~g~~~~~lLL~GppG~GKTtla~ala~el~~-------~~ieln 71 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL------------KGKPKKALLLYGPPGVGKTSLAHALANDYGW-------EVIELN 71 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEc
Confidence 468899999999999999865432 1123678999999999999999999998865 788888
Q ss_pred cccccccccccchhhHHHHHHh---------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE-EEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE---------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV-VVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~---------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~vi~~~ 352 (482)
+++.... ..+..++.. ....||+|||+|.+..... ...++.|+..++.... +|+.++
T Consensus 72 asd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~~~~~iIli~n 138 (482)
T PRK04195 72 ASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKKAKQPIILTAN 138 (482)
T ss_pred ccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHcCCCCEEEecc
Confidence 8764321 112222111 2457999999999976321 1334666666766443 344443
Q ss_pred CchhHHHHHhcCc-cccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 353 YSEPMKRVIASNE-GFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~-~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..... .+ .+++|+ ..|+|++|+.+++..+++..+.++. ..++++++..++... .
T Consensus 139 ~~~~~------~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-----------i~i~~eaL~~Ia~~s-------~ 193 (482)
T PRK04195 139 DPYDP------SLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-----------IECDDEALKEIAERS-------G 193 (482)
T ss_pred Ccccc------chhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence 22221 33 566666 8899999999999999999887653 346788999998865 3
Q ss_pred cCcchhHHHHHH
Q 011578 432 MNGGLVDPMLVN 443 (482)
Q Consensus 432 ~~~~~l~~~~~~ 443 (482)
++.|.+.+.++.
T Consensus 194 GDlR~ain~Lq~ 205 (482)
T PRK04195 194 GDLRSAINDLQA 205 (482)
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=162.12 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=131.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++|+|++.+++.|...+.. ...+..+||+||+|||||++|++||+.+.+....
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~---------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS---------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 4789999999999998877431 1123347999999999999999999999742110
Q ss_pred ----------CCCCeEEeecccccccccccchhhHHHHHH-------hcCCcEEEEecccccccCCCCCCChhHHHHHHH
Q 011578 274 ----------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEE 336 (482)
Q Consensus 274 ----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ 336 (482)
....|++++..... ....++++.+ ..+..|+||||+|+|.. ...|.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~Na 139 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNA 139 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHH
Confidence 11223444332210 1122333322 13458999999999987 44599
Q ss_pred HHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 337 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 337 ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
||..|++ ..+++|++++.. +.+ .+.|++|+ ..++|..++.+++.++|+.+++++. ..++.+
T Consensus 140 LLK~LEEpP~~~~fIl~tt~~--~kL---l~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-----------v~id~e 202 (824)
T PRK07764 140 LLKIVEEPPEHLKFIFATTEP--DKV---IGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-----------VPVEPG 202 (824)
T ss_pred HHHHHhCCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence 9999997 566666665332 233 57789998 8999999999999999999887653 345778
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
++..++... .++.|.+.+.+++.+.
T Consensus 203 al~lLa~~s-------gGdlR~Al~eLEKLia 227 (824)
T PRK07764 203 VLPLVIRAG-------GGSVRDSLSVLDQLLA 227 (824)
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 888877765 5677888888887663
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=154.34 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=129.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++|+|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~---------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE---------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 5688999999999998876421 12346799999999999999999999987421111
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHH----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 341 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l 341 (482)
...++++++..-. .+. ..+.+.+.+. .....||||||+|.|.. ...+.|+..|
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~--~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLLk~L 143 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNR--GID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALLKTL 143 (624)
T ss_pred HHHHHhcCCCCceEEEeccccc--CHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHHHHh
Confidence 1123444332110 010 1112222222 12448999999999976 4458999999
Q ss_pred cC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 342 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 342 ~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
++ ..+++|++|+.... + .+.+++|+ ..|+|++++.+++..+++..+.+.. ..++.+++..+
T Consensus 144 EEP~~~~ifILaTt~~~k--l---l~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg-----------i~id~eal~lI 206 (624)
T PRK14959 144 EEPPARVTFVLATTEPHK--F---PVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG-----------VDYDPAAVRLI 206 (624)
T ss_pred hccCCCEEEEEecCChhh--h---hHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHH
Confidence 86 56666666543222 2 45678898 7899999999999999998877542 35688888888
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHH
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
+... .|+.|.+.++++++.
T Consensus 207 A~~s-------~GdlR~Al~lLeqll 225 (624)
T PRK14959 207 ARRA-------AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHc-------CCCHHHHHHHHHHHH
Confidence 8765 566777778877653
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=161.79 Aligned_cols=224 Identities=18% Similarity=0.268 Sum_probs=153.6
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
..+...+. .++|++...+.+.+.+... ..+...+..+...++|+||||||||.+|++||+.+... ...
T Consensus 558 ~~l~~~L~~~v~GQ~~Av~~v~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~~~ 626 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIRTA-------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG----EQN 626 (852)
T ss_pred HHHHHHhcCeEcChHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----Ccc
Confidence 34445554 5899999988888775332 23333333333458999999999999999999988531 225
Q ss_pred eEEeecccc---------cc---cccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 278 VTEVQRTDL---------VG---EFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 278 ~~~~~~~~~---------~~---~~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
++.++.+++ .+ .|+|.. +..+.+.++..+.+||+||||+++++ .+.+.|++.|+.|
T Consensus 627 ~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~g 695 (852)
T TIGR03345 627 LITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDKG 695 (852)
T ss_pred eEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhcc
Confidence 667776543 22 256643 34566777878889999999999887 6668999999864
Q ss_pred c-------------EEEEEecCchh--H-------------HH---HH------hcCccccCCCcceeeCCCCCHHHHHH
Q 011578 345 K-------------VVVIFAGYSEP--M-------------KR---VI------ASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 345 ~-------------~~vi~~~~~~~--~-------------~~---~~------~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
. .++|+|++-.. + .. .+ .-.|+|++|++ +|.|.+++.+++.+
T Consensus 696 ~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred eeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHH
Confidence 2 46666654210 0 00 00 01499999996 89999999999999
Q ss_pred HHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 388 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 388 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
|+...+.+..++.... +.+...++++++..++...++ ...++|.+++.++.-......
T Consensus 775 Iv~~~L~~l~~rl~~~-~gi~l~i~d~a~~~La~~g~~----~~~GAR~L~r~Ie~~i~~~la 832 (852)
T TIGR03345 775 IVRLKLDRIARRLKEN-HGAELVYSEALVEHIVARCTE----VESGARNIDAILNQTLLPELS 832 (852)
T ss_pred HHHHHHHHHHHHHHHh-cCceEEECHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHHHH
Confidence 9999998765432211 123456899999999987641 234679999998886665543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=154.27 Aligned_cols=189 Identities=18% Similarity=0.201 Sum_probs=133.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC-----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR----- 277 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~----- 277 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.........+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~---------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ---------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc---------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5789999999999988876431 11233469999999999999999999986532111111
Q ss_pred ------------eEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 278 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 278 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
+++++++. ......++++++.+ +..|+||||+|.+.. .+.|.|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHH
Confidence 22332211 01223455555533 337999999999976 4558999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++|+... .+ .+.+++|+ ..++|++++.+++...+...++++. ..++.+++
T Consensus 141 K~LEepp~~~~fIL~t~d~~--ki---l~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-----------i~~~~~al 203 (527)
T PRK14969 141 KTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-----------IPFDATAL 203 (527)
T ss_pred HHHhCCCCCEEEEEEeCChh--hC---chhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99988 5666777654332 22 45688898 9999999999999999998887653 34577888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++++...
T Consensus 204 ~~la~~s-------~Gslr~al~lldqai~~ 227 (527)
T PRK14969 204 QLLARAA-------AGSMRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888764 57788888998887654
|
|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-16 Score=126.78 Aligned_cols=123 Identities=38% Similarity=0.562 Sum_probs=110.5
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
+..|.||||.|+..|+.+.++.++.. +...+..+.. |.||||+|+..++.+++++|+.+ +.+++..+..|.||+
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~-g~~~l~~a~~~~~~~~~~~ll~~----~~~~~~~~~~~~~~l 77 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDND-GRTPLHLAAKNGHLEIVKLLLEK----GADVNARDKDGNTPL 77 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCCHH
Confidence 46799999999999999999999865 4444666665 99999999999999999999994 567888889999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll 142 (482)
|+|+..++.+++++|++.|.+++..+..|.||+++|. ..++.+++++|+
T Consensus 78 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~Ll 126 (126)
T cd00204 78 HLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA----KNGHLEVVKLLL 126 (126)
T ss_pred HHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH----hcCCHHHHHHhC
Confidence 9999999999999999999999999999999999999 778999999875
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-16 Score=116.30 Aligned_cols=115 Identities=27% Similarity=0.375 Sum_probs=99.0
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.--+.|++.+|..+-|+..+. .+.++|..- .|++|||+|+-.|..+++++|+..||+++.+|++|-|||..|+
T Consensus 2 ~d~~~~W~vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAv- 75 (117)
T KOG4214|consen 2 GDMSVAWNVKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAV- 75 (117)
T ss_pred cchhHhhhhccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHH-
Confidence 3345789999999999999888 567777654 7999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHH
Q 011578 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL 175 (482)
-.||.++|++|++.|||-..+..+|.+.+ -++. .+.+.++|
T Consensus 76 ---wEGH~~cVklLL~~GAdrt~~~PdG~~~~-eate---~edIr~LL 116 (117)
T KOG4214|consen 76 ---WEGHRDCVKLLLQNGADRTIHAPDGTALI-EATE---EEDIRELL 116 (117)
T ss_pred ---HHhhHHHHHHHHHcCcccceeCCCchhHH-hhcc---HHHHHHHh
Confidence 67899999999999999999999998877 4433 34455444
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=165.57 Aligned_cols=205 Identities=16% Similarity=0.182 Sum_probs=147.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+...+.+.+.+..+ +....+|+|+|++||||+++|++|++.. .....+|+.+++
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s----~r~~~pfv~vnc 384 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA--------------AKSSFPVLLCGEEGVGKALLAQAIHNES----ERAAGPYIAVNC 384 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCcCHHHHHHHHHHhC----CccCCCeEEEEC
Confidence 4778888887766666554433 2356679999999999999999999844 334569999999
Q ss_pred cccc-----ccccccc----hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 284 TDLV-----GEFVGHT----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 284 ~~~~-----~~~~g~~----~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
+.+. +.++|.. .......|+.|.+|+||||||+.|....| ..|+..++++
T Consensus 385 ~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 385 QLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQ-----------SALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred CCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHH-----------HHHHHHHhcCcEEeCCCCce
Confidence 7653 3456542 11112357788999999999999998555 7788887754
Q ss_pred ---cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
++.+|++|+.+....... -.+.|..|+ ...|.+|++.. +++..+++.++.+.... ++ ....++++++
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~---~~--~~~~~s~~a~ 528 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKR---FS--TRLKIDDDAL 528 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHH---hC--CCCCcCHHHH
Confidence 356888877665332211 023444566 56778888874 78999999999876431 12 2346899999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+..+.| +||.|+|+++++.++...
T Consensus 529 ~~L~~y~W------PGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 529 ARLVSYRW------PGNDFELRSVIENLALSS 554 (638)
T ss_pred HHHHcCCC------CChHHHHHHHHHHHHHhC
Confidence 99999999 999999999999988653
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=138.31 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=121.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc-CCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~l~~ 320 (482)
.+.+++|+||||||||++|+++++.+...+ .+++.++++.+.... .+.+... ...+|+|||+|.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~----~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG----KSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVEAIAG 104 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChhhhcC
Confidence 567899999999999999999999886432 356777776654321 2233322 347999999999875
Q ss_pred CCCCCCChhHHHHHHHHHhhhc-CCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~-~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
... ....+-.++..+. .+.. +|++++..+.. .-...+.+.+|+ ...+.+|+|+.+++..+++.++.+..
T Consensus 105 ~~~------~~~~L~~~l~~~~~~~~~-iIits~~~~~~-~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~ 176 (226)
T TIGR03420 105 QPE------WQEALFHLYNRVREAGGR-LLIAGRAAPAQ-LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG 176 (226)
T ss_pred ChH------HHHHHHHHHHHHHHcCCe-EEEECCCChHH-CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC
Confidence 321 1123333333332 3344 44444433321 101126677787 46899999999999999988765431
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
..++++++..++.. | ++|.++++++++.+...... ....|+.+.+++.+
T Consensus 177 -----------~~~~~~~l~~L~~~-~------~gn~r~L~~~l~~~~~~~~~----------~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 177 -----------LQLPDEVADYLLRH-G------SRDMGSLMALLDALDRASLA----------AKRKITIPFVKEVL 225 (226)
T ss_pred -----------CCCCHHHHHHHHHh-c------cCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHh
Confidence 45788999999984 6 89999999999987653211 11347777666654
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=154.97 Aligned_cols=207 Identities=20% Similarity=0.220 Sum_probs=152.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
...+++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|+.... ....+|+.++|
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~--------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~----r~~~p~v~v~c 246 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV--------------AASDLNVLILGETGVGKELVARAIHAASP----RADKPLVYLNC 246 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCC----cCCCCeEEEEc
Confidence 4557899988888777765544 34677899999999999999999998543 34569999999
Q ss_pred ccccc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
+.+.. .++|+... .....|+.+.+|+|||||||.|.+..| ..|+..++++
T Consensus 247 ~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~ 315 (509)
T PRK05022 247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQYGEIQRVGS 315 (509)
T ss_pred ccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHH-----------HHHHHHHhcCCEeeCCC
Confidence 87643 34554211 112357889999999999999998555 7788877653
Q ss_pred ------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
.+.+|++|+.+....+.. -.+.|..|+ ...|.+|++.. +++..+++.++.+.... ++. -...+++
T Consensus 316 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~---~~~-~~~~~s~ 391 (509)
T PRK05022 316 DRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRAR---LGL-RSLRLSP 391 (509)
T ss_pred CcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHH---cCC-CCCCCCH
Confidence 357888877665433211 134455566 44688888874 88999999998876431 122 2357899
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
+++..+..+.| +||.|+|++++++|+....
T Consensus 392 ~a~~~L~~y~W------PGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 392 AAQAALLAYDW------PGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHHHhCCC------CCcHHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999999987653
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-16 Score=158.36 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=149.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|.+...+++.+.+..+ +....+++++|++||||+++|++++... .....+|+.+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~--------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s----~r~~~pfv~i 261 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL--------------AMLDAPLLITGDTGTGKDLLAYACHLRS----PRGKKPFLAL 261 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEe
Confidence 357888999988766666654333 2356679999999999999999998743 3445699999
Q ss_pred ecccccc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----
Q 011578 282 QRTDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----- 344 (482)
Q Consensus 282 ~~~~~~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----- 344 (482)
+|+.+.. ..+|... ......|+.|.+|+||||||+.|.+..| ..|+..++++
T Consensus 262 nca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 262 NCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQ-----------AKLLRFLNDGTFRRV 330 (520)
T ss_pred ccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHH-----------HHHHHHHhcCCcccC
Confidence 9987643 2345321 1123468889999999999999998555 7777777653
Q ss_pred --------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcc
Q 011578 345 --------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 345 --------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.+.||++|+.+.....-. -.+.|..|+ ...|.+|++.. +++..+++.++.+.... +|. ..+.+
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~---~g~-~~~~l 406 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADE---QGV-PRPKL 406 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHH---cCC-CCCCc
Confidence 357777766655432210 134566676 46788888875 78888888888876431 122 13478
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++++..+..+.| +||.|+|++++++|+...
T Consensus 407 s~~a~~~L~~y~W------PGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 407 AADLNTVLTRYGW------PGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CHHHHHHHhcCCC------CCHHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999998753
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=160.88 Aligned_cols=224 Identities=20% Similarity=0.311 Sum_probs=152.8
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
..+...+. .++|++.+.+.+...+.... .+...+..+...++|+||||||||++|++||+.+... ..+
T Consensus 560 ~~l~~~l~~~viGQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~~~ 628 (857)
T PRK10865 560 LRMEQELHHRVIGQNEAVEAVSNAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS----DDA 628 (857)
T ss_pred HHHHHHhCCeEeCCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC----CCc
Confidence 34444443 57899999888887754332 2222222233578999999999999999999987532 236
Q ss_pred eEEeecccccc-----c-------ccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 278 VTEVQRTDLVG-----E-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 278 ~~~~~~~~~~~-----~-------~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
++.++.+.+.. . |+|.. +..+.+.+...+++||||||++++.+ .+.+.|++.|++|
T Consensus 629 ~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g 697 (857)
T PRK10865 629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDG 697 (857)
T ss_pred EEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhC
Confidence 77777765422 1 33432 23455666666779999999999987 5568999998764
Q ss_pred c-------------EEEEEecCch--hH------------HH----HH--hcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 345 K-------------VVVIFAGYSE--PM------------KR----VI--ASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 345 ~-------------~~vi~~~~~~--~~------------~~----~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
. .++|+|++.. .+ .. .+ .-.|+|++|+|.++.|.+++.+++.+|++.
T Consensus 698 ~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~ 777 (857)
T PRK10865 698 RLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQI 777 (857)
T ss_pred ceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHH
Confidence 2 2466665531 10 11 00 114899999999999999999999999999
Q ss_pred HHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 392 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 392 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
++.+...+....+ +...++++++..++...+ ....++|.|+.++++-+.....
T Consensus 778 ~L~~l~~rl~~~g--i~l~is~~al~~L~~~gy----~~~~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 778 QLQRLYKRLEERG--YEIHISDEALKLLSENGY----DPVYGARPLKRAIQQQIENPLA 830 (857)
T ss_pred HHHHHHHHHHhCC--CcCcCCHHHHHHHHHcCC----CccCChHHHHHHHHHHHHHHHH
Confidence 9987643322223 345789999999998654 1234689999999988777444
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=141.64 Aligned_cols=194 Identities=19% Similarity=0.363 Sum_probs=137.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccc-hhhHHHHHHh-------cCCcEEEEec
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHT-GPKTRRRIKE-------AEGGILFVDE 314 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~-------a~~~vl~iDE 314 (482)
.++||.||+|+|||+||+.||+.+.. ||..+++..+... |+|+. +.-+.+++.. |..||+||||
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldV-------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDE 299 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDV-------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDE 299 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCC-------CeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEeh
Confidence 57999999999999999999999987 9999999988654 99985 4445666654 4559999999
Q ss_pred ccccccCCCCC--C-ChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchhHHHHHhcC----
Q 011578 315 AYRLIPMQKAD--D-KDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPMKRVIASN---- 364 (482)
Q Consensus 315 ~d~l~~~~~~~--~-~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~~~~~~~~~---- 364 (482)
+|++..+..+- . +-.+..+...||..+++. .+.+|+.+--..++.++...
T Consensus 300 vDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 300 VDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcch
Confidence 99998654321 1 223457778888888761 13333333111112111100
Q ss_pred -----------------------------------------------ccccCCCcceeeCCCCCHHHHHHHHH---HHHh
Q 011578 365 -----------------------------------------------EGFCRRVTKFFHFNDFNSEELAKILH---IKMN 394 (482)
Q Consensus 365 -----------------------------------------------~~l~~R~~~~i~~~~~~~~~~~~il~---~~l~ 394 (482)
|.|.+||+..+.|..++.+++.+||. ..|-
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~ 459 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALG 459 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHH
Confidence 99999999999999999999999984 2222
Q ss_pred ccccccccccc-cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 395 NQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 395 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
++.+.. +++ .+...++++++..+++... .+...+|.||.++|.+...+.-
T Consensus 460 ~Qyk~l--f~~~nV~L~fTe~Al~~IAq~Al----~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 460 KQYKKL--FGMDNVELHFTEKALEAIAQLAL----KRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred HHHHHH--hccCCeeEEecHHHHHHHHHHHH----hhccchHHHHHHHHHHHhhhcc
Confidence 222211 122 5556789999999998653 4456789999999999887643
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-15 Score=148.30 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=134.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+......
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~---------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN---------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 5789999999999998876321 1133446999999999999999999988532111
Q ss_pred --------CCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 274 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 274 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
....++++++++- .+-..++++++. ++..|++|||+|.+.. .+.+.|+
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 1112333332211 012345665544 2347999999999986 4558999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++++. + ..+ .|++++|+ ..++|.+++.+++...++..++++. ..++++++
T Consensus 139 K~LEEpp~~t~FIL~ttd-~-~kL---~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG-----------i~i~~~Al 201 (535)
T PRK08451 139 KTLEEPPSYVKFILATTD-P-LKL---PATILSRT-QHFRFKQIPQNSIISHLKTILEKEG-----------VSYEPEAL 201 (535)
T ss_pred HHHhhcCCceEEEEEECC-h-hhC---chHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 44555555433 2 333 68899997 8999999999999999999888753 35678888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..++... .|+.|.+.+.++++....
T Consensus 202 ~~Ia~~s-------~GdlR~alnlLdqai~~~ 226 (535)
T PRK08451 202 EILARSG-------NGSLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHHhc
Confidence 8888865 577888888888877643
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=153.10 Aligned_cols=190 Identities=21% Similarity=0.212 Sum_probs=134.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|...+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT---------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 5789999999999998876421 12344579999999999999999999986432111
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...++++++.+- .....++++.+. ++..|++|||+|.|.. .+.|.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHH
Confidence 112344433221 112234444433 2447999999999986 4459999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++|+.. ..+ .+++++|+ ..++|..++.+++...++..+++.. ..++.+++
T Consensus 141 k~LEepp~~~~fIl~t~~~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg-----------i~i~~~al 203 (576)
T PRK14965 141 KTLEEPPPHVKFIFATTEP--HKV---PITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG-----------ISISDAAL 203 (576)
T ss_pred HHHHcCCCCeEEEEEeCCh--hhh---hHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence 99987 456666665432 233 67789998 8999999999999999998888653 35678888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..++... .|+.|.+.+.++++....
T Consensus 204 ~~la~~a-------~G~lr~al~~Ldqliay~ 228 (576)
T PRK14965 204 ALVARKG-------DGSMRDSLSTLDQVLAFC 228 (576)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 8888765 577788888888776543
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=151.74 Aligned_cols=188 Identities=21% Similarity=0.229 Sum_probs=134.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.|...+.. ...+..+||+||+|+|||++|+++|+.+........
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~---------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET---------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 4788999999999999886421 124557999999999999999999999875432111
Q ss_pred ---------------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHH
Q 011578 276 ---------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 276 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
..++++++++ ..| -..++++++.+ +..|++|||+|.+.. ..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s----~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a 148 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAAS----HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AA 148 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccc----cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HH
Confidence 1123333221 111 23455555433 458999999999976 45
Q ss_pred HHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 334 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 334 ~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.+.|+..|++ ..+++|++++.. ..+ .+.+++|+ ..|.|..++.+++...++..++++. ..+
T Consensus 149 ~naLLKtLEePp~~~~fIl~tte~--~kl---l~tI~SRc-q~~~f~~l~~~el~~~L~~i~~keg-----------i~i 211 (598)
T PRK09111 149 FNALLKTLEEPPPHVKFIFATTEI--RKV---PVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEG-----------VEV 211 (598)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 5899999987 556666654322 223 46688998 8999999999999999999988653 356
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+.+++..++... .|+.|.+.+.++++..
T Consensus 212 ~~eAl~lIa~~a-------~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 212 EDEALALIARAA-------EGSVRDGLSLLDQAIA 239 (598)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 778888888765 5777888888877654
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=148.84 Aligned_cols=223 Identities=18% Similarity=0.168 Sum_probs=145.2
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCce-eEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEEe
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHM-AFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEV 281 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~~ 281 (482)
+.|.+.+...++|..++..... ...+.++ +++|+||||||++++.+.+++... .......++.+
T Consensus 755 D~LPhREeEIeeLasfL~paIk------------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK------------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh------------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 4577888888888877554421 1233344 699999999999999999988532 11222457888
Q ss_pred eccccccc----------cccc-------chhhHHHHHHhc---C--CcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 282 QRTDLVGE----------FVGH-------TGPKTRRRIKEA---E--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 282 ~~~~~~~~----------~~g~-------~~~~~~~~~~~a---~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
++..+... +.|. +...+..+|... . ..||+|||||.|....+ .++-.|+.
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DVLYnLFR 894 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KVLFTLFD 894 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HHHHHHHH
Confidence 88543211 1122 223344556543 1 25999999999987544 44544444
Q ss_pred hhc--CCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 340 VMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 340 ~l~--~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
+.. +..++||+.++.-.+. -..+|.+++||. ..+.|++|+.+++.+||+..+.... .-++++++
T Consensus 895 ~~~~s~SKLiLIGISNdlDLp--erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-----------gVLdDdAI 961 (1164)
T PTZ00112 895 WPTKINSKLVLIAISNTMDLP--ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-----------EIIDHTAI 961 (1164)
T ss_pred HhhccCCeEEEEEecCchhcc--hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-----------CCCCHHHH
Confidence 432 4668888876533222 123788899984 4599999999999999999887521 24677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
..+++... ...|++|..-++++.|.+.. +...|+.+|+.+|+.++
T Consensus 962 ELIArkVA----q~SGDARKALDILRrAgEik------------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 962 QLCARKVA----NVSGDIRKALQICRKAFENK------------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHhhh----hcCCHHHHHHHHHHHHHhhc------------CCCccCHHHHHHHHHHH
Confidence 77776321 22577777778877777641 11268889999888765
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=143.98 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=112.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+++.+..++. ....+..++|+||||+|||++|+++++.++. +++.++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------~~~~i~ 75 (316)
T PHA02544 18 STIDECILPAADKETFKSIVK---------------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------EVLFVN 75 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHh---------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------cceEec
Confidence 578899999999999888742 0123344556999999999999999998753 567777
Q ss_pred cccccccccccchhhHHHHHHh----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHH
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 358 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~ 358 (482)
+++ +. +......+.+.... +...||+|||+|.+..+ .....+..+++....+. .+|++++.. .
T Consensus 76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~~~~~L~~~le~~~~~~-~~Ilt~n~~--~ 142 (316)
T PHA02544 76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------DAQRHLRSFMEAYSKNC-SFIITANNK--N 142 (316)
T ss_pred cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------HHHHHHHHHHHhcCCCc-eEEEEcCCh--h
Confidence 765 21 11111112221111 34689999999988431 11233444444433344 444443322 2
Q ss_pred HHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 359 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 359 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
.+ .|++++|| ..+.|+.|+.+++..+++.++........ .-...++++++..++...+
T Consensus 143 ~l---~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~----~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 GI---IEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILE----AEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred hc---hHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcC
Confidence 22 78899999 68999999999999888776554321000 1124567888899888764
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=150.33 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=129.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|+..+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~---------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS---------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 5789999999999988876421 12344579999999999999999999886532110
Q ss_pred ------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh
Q 011578 275 ------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 341 (482)
Q Consensus 275 ------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l 341 (482)
...+++++++. . .+...++++.+.+ +..|++|||+|.|.. .+.+.|+..|
T Consensus 80 ~~~~~~~~Dvieidaas----n--~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtL 142 (725)
T PRK07133 80 IENVNNSLDIIEMDAAS----N--NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTL 142 (725)
T ss_pred HHhhcCCCcEEEEeccc----c--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHh
Confidence 01112222110 0 1122355554432 347999999999976 4569999999
Q ss_pred cC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 342 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 342 ~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
++ ..+++|++|+.. ..+ .|++++|+ .+++|.+++.+++...++..+.+.. ..++.+++..+
T Consensus 143 EEPP~~tifILaTte~--~KL---l~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg-----------I~id~eAl~~L 205 (725)
T PRK07133 143 EEPPKHVIFILATTEV--HKI---PLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN-----------ISYEKNALKLI 205 (725)
T ss_pred hcCCCceEEEEEcCCh--hhh---hHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHH
Confidence 87 456666665422 233 67889999 7999999999999999998887643 34567778877
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+... .|+.|.+.++++.+..
T Consensus 206 A~lS-------~GslR~AlslLekl~~ 225 (725)
T PRK07133 206 AKLS-------SGSLRDALSIAEQVSI 225 (725)
T ss_pred HHHc-------CCCHHHHHHHHHHHHH
Confidence 7754 5667778788776543
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=135.70 Aligned_cols=193 Identities=22% Similarity=0.200 Sum_probs=117.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc------cccccccccchhhHHH---------------
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGEFVGHTGPKTRR--------------- 300 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~--------------- 300 (482)
...+++|.||||||||++|+++|+.++. +++.+++. ++++.+.|.....+..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQ 92 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccce
Confidence 3468999999999999999999987654 77766554 3444444322211111
Q ss_pred ------HHH-hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------------------cEEEEEecCch
Q 011578 301 ------RIK-EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------KVVVIFAGYSE 355 (482)
Q Consensus 301 ------~~~-~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------------------~~~vi~~~~~~ 355 (482)
++. ...+++|+|||++++.+. +.+.|+..|+++ .+.+|+|+++.
T Consensus 93 ~~~~g~l~~A~~~g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 93 NWVDNRLTLAVREGFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred eecCchHHHHHHcCCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 111 235689999999998874 447777777652 34577776655
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
...-....++++.+|| ..+.++.|+.++..+|++.... . ... ..+.+..+..... + ....-..
T Consensus 162 ~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~-~-----------~~~-~~~~iv~~~~~~R-~--~~~~~~~ 224 (262)
T TIGR02640 162 EYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKTD-V-----------AED-SAATIVRLVREFR-A--SGDEITS 224 (262)
T ss_pred cccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhhC-C-----------CHH-HHHHHHHHHHHHH-h--hCCccCC
Confidence 3322222378899999 7899999999999999987642 1 111 2233333333322 1 1111112
Q ss_pred hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 436 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 436 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.+|..+..+...+...+ ...++.+||.+....+-
T Consensus 225 ~~r~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 225 GLRASLMIAEVATQQDI---------PVDVDDEDFVDLCIDIL 258 (262)
T ss_pred cHHHHHHHHHHHHHcCC---------CCCCCcHHHHHHHHHHh
Confidence 26666665555442221 23567888887766553
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-15 Score=149.80 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=130.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.......
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~---------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN---------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4688999999999988876321 12345699999999999999999999986432111
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...+++++++.. .| -..++++++. +...|++|||+|.+.. .+.+.|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~----ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLL 140 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASN----NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALL 140 (605)
T ss_pred HHHHHHcCCCCceEEeccccc----cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHH
Confidence 112333433221 11 1224444432 2347999999999976 3458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++++. ...+ .+++++|+ ..++|++++.+++...++..+.+.. ..++.+++
T Consensus 141 KtLEEPp~~tvfIL~Tt~--~~KL---l~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg-----------i~Is~eal 203 (605)
T PRK05896 141 KTLEEPPKHVVFIFATTE--FQKI---PLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK-----------IKIEDNAI 203 (605)
T ss_pred HHHHhCCCcEEEEEECCC--hHhh---hHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 45566655432 2333 67889998 7999999999999999999887643 34677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.+...
T Consensus 204 ~~La~lS-------~GdlR~AlnlLekL~~y 227 (605)
T PRK05896 204 DKIADLA-------DGSLRDGLSILDQLSTF 227 (605)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHhh
Confidence 8877765 56778888888875443
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=141.90 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=129.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.+.+.+.. ...+..+||+||||+|||++|+++++.+.......
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~---------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN---------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5788999999999988876421 12345689999999999999999999886421100
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...++.+++... .....++++++.+ ...||+|||+|.+.. ...+.|+
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHH
Confidence 112334433210 1122345555433 236999999999865 4458889
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ ..+++|++++. ...+ .+++++|+ ..++|++|+.+++.++++.++++.. ..++++++
T Consensus 139 ~~le~~~~~~~lIl~~~~--~~~l---~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~a~ 201 (355)
T TIGR02397 139 KTLEEPPEHVVFILATTE--PHKI---PATILSRC-QRFDFKRIPLEDIVERLKKILDKEG-----------IKIEDEAL 201 (355)
T ss_pred HHHhCCccceeEEEEeCC--HHHH---HHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99876 45555555432 2233 56788898 7899999999999999999888653 24577888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .++.+.+.+.++.+...
T Consensus 202 ~~l~~~~-------~g~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 202 ELIARAA-------DGSLRDALSLLDQLISF 225 (355)
T ss_pred HHHHHHc-------CCChHHHHHHHHHHHhh
Confidence 8888754 46677777777776553
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-15 Score=157.28 Aligned_cols=207 Identities=19% Similarity=0.235 Sum_probs=148.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|.+...+.+.+.+..+ +....+|+++|++|||||++|++|+.... ....+|+.++
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~--------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~----r~~~~~v~i~ 434 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV--------------AQSDSTVLILGETGTGKELIARAIHNLSG----RNNRRMVKMN 434 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhcC----CCCCCeEEEe
Confidence 45668999988887777665443 24567899999999999999999998543 3456999999
Q ss_pred cccccc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------
Q 011578 283 RTDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 344 (482)
Q Consensus 283 ~~~~~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------ 344 (482)
|..+.. .++|+.. ......|+.+.+|+||||||+.+....| ..|+..++++
T Consensus 435 c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q-----------~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 435 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ-----------PKLLRVLQEQEFERLG 503 (686)
T ss_pred cccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHH-----------HHHHHHHHhCCEEeCC
Confidence 876532 3455321 1223467888999999999999988555 7777777653
Q ss_pred -------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCccc
Q 011578 345 -------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCS 412 (482)
Q Consensus 345 -------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 412 (482)
.+.+|++++.+....... -.+.+..|+ ...|.+|++.. +++..+++.++.+...+ ++..+ ..++
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~---~~~~~-~~~s 579 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARR---MGRNI-DSIP 579 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHH---cCCCC-CCcC
Confidence 357777776654332211 023344465 44678888874 88999999998876531 12222 3689
Q ss_pred HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 413 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++++..+..+.| +||.+++++++++|+...
T Consensus 580 ~~al~~L~~y~W------PGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 580 AETLRTLSNMEW------PGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHHHhCCC------CCcHHHHHHHHHHHHHhC
Confidence 999999999999 999999999999998754
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-15 Score=146.25 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=128.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|+..+.. ...+..+||+||||+|||++|+++|+.+.......
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~---------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM---------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh---------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 4788999999999988876421 12344599999999999999999999997532100
Q ss_pred CC-----------------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhH
Q 011578 275 TD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG 330 (482)
Q Consensus 275 ~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~ 330 (482)
.. .++.+++... .....++++.+.. ...|+||||+|.+..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------- 141 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------- 141 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------
Confidence 01 1222222110 0123344443332 447999999999976
Q ss_pred HHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011578 331 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH 408 (482)
Q Consensus 331 ~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~ 408 (482)
...+.|+..+++ ...++|++++. ...+ .+++.+|+ ..++|++++.+++...++..+++..
T Consensus 142 -~~~~~LLk~LEep~~~t~~Il~t~~--~~kl---~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g----------- 203 (397)
T PRK14955 142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLEEIQQQLQGICEAEG----------- 203 (397)
T ss_pred -HHHHHHHHHHhcCCCCeEEEEEeCC--hHHh---HHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcC-----------
Confidence 344788888887 34555555432 2333 56788888 6899999999999999998887542
Q ss_pred CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 409 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++.+++..++... .|+.+.+.+.++.+...
T Consensus 204 ~~i~~~al~~l~~~s-------~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 204 ISVDADALQLIGRKA-------QGSMRDAQSILDQVIAF 235 (397)
T ss_pred CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 357888898888765 56777777777766543
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=140.61 Aligned_cols=229 Identities=20% Similarity=0.168 Sum_probs=142.0
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC--CCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--PTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--~~~~~~~~~~ 283 (482)
++++|.+...+.|..++.... ....+..++++||||||||++++.+++.+...... ....++.+++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 357899988888887754331 12355689999999999999999999987532110 1135666776
Q ss_pred ccccc----------ccc--cc-------c-hhhHHHHHHh----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 284 TDLVG----------EFV--GH-------T-GPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 284 ~~~~~----------~~~--g~-------~-~~~~~~~~~~----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
....+ .+. |. + ......+++. .+..||+|||+|.+....+ .++..|+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhc
Confidence 54321 111 11 1 1112233322 2347999999999984322 45566665
Q ss_pred hh-----cCCcEEEEEecCchhHHHHHhcCccccCCC-cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 340 VM-----DGGKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 340 ~l-----~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
.. ....+.+|++++...+.. ..++.+.+|| +..+.|++|+.+++.+|++..++... . ...+++
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~--------~-~~~~~~ 223 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF--------Y-DGVLDD 223 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCh
Confidence 52 225566666654332211 2377888888 47899999999999999999886311 0 123555
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+++..++.... ...|+.|.+.+++..|...+..+ ....|+.+|+..|+..+.
T Consensus 224 ~~l~~i~~~~~----~~~Gd~R~al~~l~~a~~~a~~~---------~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 224 GVIPLCAALAA----QEHGDARKAIDLLRVAGEIAERE---------GAERVTEDHVEKAQEKIE 275 (365)
T ss_pred hHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHH
Confidence 65554444221 11477778888888887655221 224689999998887764
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=130.77 Aligned_cols=160 Identities=18% Similarity=0.262 Sum_probs=104.8
Q ss_pred cEEEEecccccccCCCCCCChhHH-HHHHHHHhhhcCC------------cEEEEEecC---chhHHHHHhcCccccCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDGG------------KVVVIFAGY---SEPMKRVIASNEGFCRRV 371 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~-~~~~~ll~~l~~~------------~~~vi~~~~---~~~~~~~~~~~~~l~~R~ 371 (482)
||+||||||+++.+.+.++.+.++ .+..-||..+++. .+.+|+++- ..|.+ .-|.|.+||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD----LiPELQGRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD----LIPELQGRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh----cChhhcCCC
Confidence 999999999999876644435444 6678899999872 346666552 22222 269999999
Q ss_pred cceeeCCCCCHHHHHHHHH----HHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc-ccCcchhHHHHHHHHH
Q 011578 372 TKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR-EMNGGLVDPMLVNARE 446 (482)
Q Consensus 372 ~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~a~~ 446 (482)
+.++++..++.++..+||. ..+++......+. .+...++++++.+++.-.|...... ...+|.|..++++...
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE--~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLe 405 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKASLIKQYKALLKTE--GVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLE 405 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhc--CeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 9999999999999999984 2222222111122 3456789999999999887443322 2345777777777655
Q ss_pred HhhhhhcCCCCCh-hhhhcccHHHHHHHHHHH
Q 011578 447 NLDLRLSFDCLDT-DELRTITLEDLEAGLKLL 477 (482)
Q Consensus 447 ~~~~r~~~~~~~~-~~~~~i~~~d~~~al~~~ 477 (482)
. ++++.++. .....|+.+=+.+-|..+
T Consensus 406 d----iSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 406 D----ISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred H----hCccCCcCCCCeEEEcHHHHHHHHHHH
Confidence 4 44444332 234466666666666544
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=146.77 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=146.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.|++++|++.+.+.|...+..- .-....+|+||-|||||++||.+|+.+++.......|+..+.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~---------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG---------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC---------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 57899999999999999864322 234569999999999999999999999865433333443332
Q ss_pred ccc-c-cccc---------cccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-
Q 011578 283 RTD-L-VGEF---------VGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 343 (482)
Q Consensus 283 ~~~-~-~~~~---------~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~- 343 (482)
... + .+.+ --.+-..+|++.++. +..|.+|||+|+|.. .+.|.||.-+++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEEP 146 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEEP 146 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhcccccC
Confidence 210 0 0000 011334567776654 348999999999987 566999999998
Q ss_pred -CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 344 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 344 -~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
..|++|+|||...- + .+.+++|+ .++.|...+.+++...+..++.++. ..++++++..+++.
T Consensus 147 P~hV~FIlATTe~~K--i---p~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~-----------I~~e~~aL~~ia~~ 209 (515)
T COG2812 147 PSHVKFILATTEPQK--I---PNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG-----------INIEEDALSLIARA 209 (515)
T ss_pred ccCeEEEEecCCcCc--C---chhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC-----------CccCHHHHHHHHHH
Confidence 56777777664332 2 78889999 9999999999999999999998864 46688999999886
Q ss_pred HhhHhhccccCcchhHHHHHHHHHHh
Q 011578 423 ETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
. .|..|+..++++.+....
T Consensus 210 a-------~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 210 A-------EGSLRDALSLLDQAIAFG 228 (515)
T ss_pred c-------CCChhhHHHHHHHHHHcc
Confidence 5 567799999999998764
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-14 Score=139.87 Aligned_cols=229 Identities=15% Similarity=0.126 Sum_probs=144.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
+.++|.+...++|...+.... ....+.+++++||||||||++++.+++.+...+ ....++.+++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~------------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~~~ 95 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL------------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINCQI 95 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEECCc
Confidence 346777777777776643321 123556799999999999999999999886433 223567777653
Q ss_pred ccc----------cccc-------cchhhH-HHH---HHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC
Q 011578 286 LVG----------EFVG-------HTGPKT-RRR---IKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 343 (482)
Q Consensus 286 ~~~----------~~~g-------~~~~~~-~~~---~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~ 343 (482)
..+ ++.+ .+...+ ..+ +.. ....||+|||+|.+..... ...+..|+..++.
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~ 168 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEE 168 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhc
Confidence 221 1112 111112 122 221 1237999999999982211 1456666666543
Q ss_pred ---CcEEEEEecCchhHHHHHhcCccccCCC-cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 344 ---GKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 344 ---~~~~vi~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
.++.+|++++....... .+|.+.+|| ...|.|++|+.+++.+|++..++.. +. ...++++++..+
T Consensus 169 ~~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--------~~-~~~~~~~~l~~i 237 (394)
T PRK00411 169 YPGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--------FY-PGVVDDEVLDLI 237 (394)
T ss_pred cCCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--------cc-cCCCCHhHHHHH
Confidence 36667776554433332 267777777 5689999999999999999887532 11 124577777776
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
++... ...|+.|.+.+++..|...+..+ ....|+.+|+..|++++.+
T Consensus 238 ~~~~~----~~~Gd~r~a~~ll~~a~~~a~~~---------~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 238 ADLTA----REHGDARVAIDLLRRAGLIAERE---------GSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHH----HhcCcHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHHH
Confidence 66542 12466677777777776654221 2357999999999988743
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=147.86 Aligned_cols=188 Identities=17% Similarity=0.197 Sum_probs=132.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+........
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES---------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 5788999999999998877431 123445899999999999999999999875311111
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..++++++..- .....++++.+. ++..|++|||+|.+.. .+.+.|+
T Consensus 78 ~C~~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLL 140 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALL 140 (563)
T ss_pred HHHHHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHH
Confidence 12222322110 011234444422 3458999999999976 4568999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ ..+++|++++. ...+ .+++++|+ ..++|.+++.+++...++..+.+.. ..++++++
T Consensus 141 K~LEepp~~~vfI~~tte--~~kL---~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~eg-----------i~id~eAl 203 (563)
T PRK06647 141 KTIEEPPPYIVFIFATTE--VHKL---PATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ-----------IKYEDEAL 203 (563)
T ss_pred HhhccCCCCEEEEEecCC--hHHh---HHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99997 56677776543 2333 67889999 6899999999999999998877642 34678899
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++... .|+.|.+.+.++++..
T Consensus 204 ~lLa~~s-------~GdlR~alslLdklis 226 (563)
T PRK06647 204 KWIAYKS-------TGSVRDAYTLFDQVVS 226 (563)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 9888865 5778888888887654
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-14 Score=143.85 Aligned_cols=189 Identities=20% Similarity=0.243 Sum_probs=128.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+.+.+...+..- ..+..+||+||||+|||++|+.+|+.+........
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~---------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ---------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 46889999999999888764211 12334789999999999999999998864211110
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..+++++++.- .| ...++.+.+. +...|++|||+|.+.. .+.+.|+
T Consensus 78 nc~~i~~g~~~d~~eidaas~----~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLL 140 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASN----RG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALL 140 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccC----CC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHH
Confidence 12233322110 11 1223333322 2347999999999875 4458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..++. ..+++|++++. ...+ .+++.+|+ ..+.|++++.+++...++..+++.. ..++.+++
T Consensus 141 k~LEepp~~~v~Il~tt~--~~kl---~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg-----------i~id~~al 203 (486)
T PRK14953 141 KTLEEPPPRTIFILCTTE--YDKI---PPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK-----------IEYEEKAL 203 (486)
T ss_pred HHHhcCCCCeEEEEEECC--HHHH---HHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 88887 34555555432 2223 56788898 6899999999999999999888653 35677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.+...
T Consensus 204 ~~La~~s-------~G~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 204 DLLAQAS-------EGGMRDAASLLDQASTY 227 (486)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888764 57788888888887644
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-15 Score=142.85 Aligned_cols=188 Identities=26% Similarity=0.323 Sum_probs=123.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..++. ....++++|+||||||||++++++++.+...+. ...+++++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~----------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~--~~~~i~~~ 75 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVK----------------EKNMPHLLFAGPPGTGKTTAALALARELYGEDW--RENFLELN 75 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc--ccceEEec
Confidence 568889999999998887742 123346999999999999999999998854321 23456665
Q ss_pred cccccccccccchhhHHHHHHh-----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~ 354 (482)
+++..+.. .....+.+.... +...||+|||+|.+.... .+.|+..++. ...+|+.+++.
T Consensus 76 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 76 ASDERGID--VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred cccccchH--HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcCCCCCeEEEEeCCc
Confidence 44321100 000111111111 234699999999996532 2455555553 33444444333
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
..+ .+++.+|+ ..++|++++.+++..+++.++++.. ..++++++..++... .++.
T Consensus 143 ~~l------~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-----------~~i~~~al~~l~~~~-------~gd~ 197 (319)
T PRK00440 143 SKI------IDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-----------IEITDDALEAIYYVS-------EGDM 197 (319)
T ss_pred ccc------chhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCH
Confidence 222 45677888 5799999999999999999888653 356888999998764 5777
Q ss_pred chhHHHHHHHHH
Q 011578 435 GLVDPMLVNARE 446 (482)
Q Consensus 435 ~~l~~~~~~a~~ 446 (482)
|.+.+.++.+..
T Consensus 198 r~~~~~l~~~~~ 209 (319)
T PRK00440 198 RKAINALQAAAA 209 (319)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=142.06 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=128.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-----CCC
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----TDR 277 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-----~~~ 277 (482)
..|++++|++.+++.+...+.. ...+.+++||||||+|||++|+++++.+...+... ...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~---------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN---------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 5788999999999888876421 12456799999999999999999999887533211 111
Q ss_pred eEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEE
Q 011578 278 VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV 348 (482)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~v 348 (482)
+++++... ......++++++.+ ...||||||+|.+.. ..++.|+..+++ ...++
T Consensus 79 ~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~~~~~~ 141 (367)
T PRK14970 79 IFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPPAHAIF 141 (367)
T ss_pred eEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCCCceEE
Confidence 22222111 11223455555532 337999999998865 345788887876 33444
Q ss_pred EEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 349 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|++++.. ..+ .|++.+|+ ..++|++|+.+++..++...+++.. ..++.+++..++...
T Consensus 142 Il~~~~~--~kl---~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~al~~l~~~~----- 199 (367)
T PRK14970 142 ILATTEK--HKI---IPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG-----------IKFEDDALHIIAQKA----- 199 (367)
T ss_pred EEEeCCc--ccC---CHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHhC-----
Confidence 4443322 122 67888898 6899999999999999998887643 356788999888864
Q ss_pred ccccCcchhHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARE 446 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~ 446 (482)
.++.|.+.+.++....
T Consensus 200 --~gdlr~~~~~lekl~~ 215 (367)
T PRK14970 200 --DGALRDALSIFDRVVT 215 (367)
T ss_pred --CCCHHHHHHHHHHHHH
Confidence 5677788888777654
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=143.64 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=129.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.......
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~---------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF---------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 5789999999999988876421 12345689999999999999999999886421100
Q ss_pred ----------CCCeEEeecccccccccccchhhHHHHHH-------hcCCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 275 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 275 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
...++++++... .| -..++++.+ .+...|++|||+|.+.. .+.+.|
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~L 141 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSL 141 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHH
Confidence 112333433211 11 112222221 23568999999999975 445889
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+..|++ +.+++|++++.. ..+ .+++++|+ ..++|++++.+++...++..+++.. ..++.++
T Consensus 142 Lk~lEep~~~~~~Il~t~~~--~kl---~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-----------~~i~~~a 204 (451)
T PRK06305 142 LKTLEEPPQHVKFFLATTEI--HKI---PGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-----------IETSREA 204 (451)
T ss_pred HHHhhcCCCCceEEEEeCCh--Hhc---chHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 455666654322 333 67889999 7899999999999999998877643 3467888
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+..++... .|+.|.+.+.++....
T Consensus 205 l~~L~~~s-------~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 205 LLPIARAA-------QGSLRDAESLYDYVVG 228 (451)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88888765 4666777777776543
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=132.31 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=121.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-hcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~vl~iDE~d~l~~ 320 (482)
...+++|+||||||||++|+++++.+...+ ..++.+++..+... +. .....+|+|||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~----~~~~~i~~~~~~~~------------~~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG----RNARYLDAASPLLA------------FDFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEEehHHhHHH------------HhhcccCCEEEEeChhhcCc
Confidence 456899999999999999999999875433 25666666554211 11 12458999999998865
Q ss_pred CCCCCCChhHHHHHHHHHhhhc-CCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~-~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
..+ ..+-.++..+. .+..+++++++..+... ...+.+.+|| ...+++++|+.+++..+++.+..+..
T Consensus 105 ~~~--------~~L~~~~~~~~~~~~~~vl~~~~~~~~~~--~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~ 174 (227)
T PRK08903 105 AQQ--------IALFNLFNRVRAHGQGALLVAGPAAPLAL--PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG 174 (227)
T ss_pred hHH--------HHHHHHHHHHHHcCCcEEEEeCCCCHHhC--CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 333 23333333333 35544555554443221 1246677788 57999999999988888887665432
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
..++++++..+.+ .| ++|.++++++++.....+ ......||...+++.+.
T Consensus 175 -----------v~l~~~al~~L~~-~~------~gn~~~l~~~l~~l~~~~----------~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 175 -----------LQLADEVPDYLLT-HF------RRDMPSLMALLDALDRYS----------LEQKRPVTLPLLREMLA 224 (227)
T ss_pred -----------CCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHh
Confidence 5678899999999 56 899999999999854322 11224688888888775
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-14 Score=144.93 Aligned_cols=186 Identities=21% Similarity=0.284 Sum_probs=129.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|..++..- ....++||+||||+|||++|+++|+.+.......
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~---------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN---------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC---------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 57889999999999988874321 1345799999999999999999999987532110
Q ss_pred -----------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHH
Q 011578 275 -----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE 336 (482)
Q Consensus 275 -----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ 336 (482)
...+++++.. .+.....++++++.+ +..|+||||+|.|.. .+.+.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~na 140 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNA 140 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHH
Confidence 0012233221 112234566666543 347999999999976 45599
Q ss_pred HHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 337 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 337 ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
|+..|++ ..+++|++++. + ..+ .|++++|+ ..++|+.++.++....+...+.+.. ..++.+
T Consensus 141 LLK~LEePp~~tvfIL~t~~-~-~~l---lpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~keg-----------i~is~~ 203 (620)
T PRK14948 141 LLKTLEEPPPRVVFVLATTD-P-QRV---LPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKES-----------IEIEPE 203 (620)
T ss_pred HHHHHhcCCcCeEEEEEeCC-h-hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhC-----------CCCCHH
Confidence 9999997 55666665542 2 223 57889999 8899999999999988888776543 345777
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHH
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
++..++... .|+.|.+.+.++..
T Consensus 204 al~~La~~s-------~G~lr~A~~lLekl 226 (620)
T PRK14948 204 ALTLVAQRS-------QGGLRDAESLLDQL 226 (620)
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHH
Confidence 887777764 45666777776653
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-14 Score=145.18 Aligned_cols=189 Identities=15% Similarity=0.232 Sum_probs=129.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|+..+.. ..-+..+||+||||||||++|+++|+.+.......
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~---------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM---------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 4789999999999998876321 12344599999999999999999999997522110
Q ss_pred -----------------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhH
Q 011578 275 -----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYG 330 (482)
Q Consensus 275 -----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~ 330 (482)
...++.+++... . ....++++.+. +...|++|||+|.+..
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~----~--~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------- 141 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASN----N--SVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------- 141 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------
Confidence 011222221110 0 12234444332 2457999999999976
Q ss_pred HHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011578 331 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH 408 (482)
Q Consensus 331 ~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~ 408 (482)
...+.|+..|++ +..++|++++. ...+ .+++.+|+ ..++|.+++.+++...++..+++..
T Consensus 142 -~a~naLLK~LEePp~~tv~IL~t~~--~~kL---l~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~eg----------- 203 (620)
T PRK14954 142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLDEIQSQLQMICRAEG----------- 203 (620)
T ss_pred -HHHHHHHHHHhCCCCCeEEEEEeCC--hhhh---hHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcC-----------
Confidence 345899999987 45555555432 2333 56788898 8999999999999999988887643
Q ss_pred CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 409 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++.+++..++... .|+.+.+.+.++.....
T Consensus 204 i~I~~eal~~La~~s-------~Gdlr~al~eLeKL~~y 235 (620)
T PRK14954 204 IQIDADALQLIARKA-------QGSMRDAQSILDQVIAF 235 (620)
T ss_pred CCCCHHHHHHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 356888888888765 56677777777765443
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-16 Score=136.24 Aligned_cols=114 Identities=30% Similarity=0.441 Sum_probs=73.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC------------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG------------ 271 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~------------ 271 (482)
+|.+|+|++..|+.+.-.. ....++|++||||||||++|+++...+....
T Consensus 1 Df~dI~GQe~aKrAL~iAA------------------aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s 62 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA------------------AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYS 62 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH------------------HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-T
T ss_pred ChhhhcCcHHHHHHHHHHH------------------cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccc
Confidence 3678999999999988542 1357999999999999999999998763211
Q ss_pred ---------CCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 272 ---------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 272 ---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
.....||...+.+.-....+|......-..+..|.+||||+||+-.+. ..+++.|++.|+
T Consensus 63 ~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~-----------~~vld~Lr~ple 131 (206)
T PF01078_consen 63 VAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFD-----------RSVLDALRQPLE 131 (206)
T ss_dssp T---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred cccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC-----------HHHHHHHHHHHH
Confidence 111233444443333333445433323345688999999999996554 489999999998
Q ss_pred CCcE
Q 011578 343 GGKV 346 (482)
Q Consensus 343 ~~~~ 346 (482)
++.+
T Consensus 132 ~g~v 135 (206)
T PF01078_consen 132 DGEV 135 (206)
T ss_dssp HSBE
T ss_pred CCeE
Confidence 8644
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-15 Score=140.00 Aligned_cols=160 Identities=21% Similarity=0.282 Sum_probs=104.6
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC----------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------- 273 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------- 273 (482)
.|.+++|++.+++.+.-.. + .....|+||.||||||||++||++++.+......
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~--~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTA--I--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CHHHhCCHHHHHHHHHHHH--h--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4788999999988777431 1 0123689999999999999999999988310000
Q ss_pred ----------------CCCCeEEeeccccccccccc--------chhh--HHHHHHhcCCcEEEEecccccccCCCCCCC
Q 011578 274 ----------------PTDRVTEVQRTDLVGEFVGH--------TGPK--TRRRIKEAEGGILFVDEAYRLIPMQKADDK 327 (482)
Q Consensus 274 ----------------~~~~~~~~~~~~~~~~~~g~--------~~~~--~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~ 327 (482)
...+|+.+..+.-....+|. ++.. ....+.++.+++|||||++.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------ 143 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------ 143 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH------
Confidence 00223323222222224442 1111 123455677899999999999874
Q ss_pred hhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHHHHHHHH
Q 011578 328 DYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHI 391 (482)
Q Consensus 328 ~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~ 391 (482)
+++.|++.|+++. ++++++.++.. .. ..+++.+||...+.+++|.. +++.+|++.
T Consensus 144 -----~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e-~~---l~~aLldRF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 144 -----IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCccc-CC---CCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 4488888887654 34444433321 11 26789999999999998887 899999987
Q ss_pred HHh
Q 011578 392 KMN 394 (482)
Q Consensus 392 ~l~ 394 (482)
...
T Consensus 215 ~~~ 217 (334)
T PRK13407 215 RDA 217 (334)
T ss_pred hhc
Confidence 543
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.1e-15 Score=143.98 Aligned_cols=159 Identities=20% Similarity=0.227 Sum_probs=106.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC----------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------- 273 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------- 273 (482)
.|++|+|++.+++.|+..+..-.. .....+...+..+||+||||+|||++|+++|+.+......
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~------~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C 76 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA------DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRAC 76 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc------cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHH
Confidence 588999999999999987542210 0011122245679999999999999999999988643210
Q ss_pred -----CCCC-eEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh
Q 011578 274 -----PTDR-VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 340 (482)
Q Consensus 274 -----~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~ 340 (482)
.+.| +..+.+. +..+ ....++++++.+ +..|+||||+|.+.+. ..|.|+..
T Consensus 77 ~~~~~~~hpD~~~i~~~---~~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~ 140 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPE---GLSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKA 140 (394)
T ss_pred HHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHH
Confidence 0011 1112111 1111 122356666543 2379999999999873 34889999
Q ss_pred hcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 341 MDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 341 l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
|++ +.++|++|+++..+ .|++++|+ ..+.|++|+.+++.+.+..
T Consensus 141 LEep~~~~~fIL~a~~~~~l------lpTIrSRc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDV------LPTIRSRC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred hhcCCCCCeEEEEECChHHC------hHHHHhhC-eEEECCCCCHHHHHHHHHH
Confidence 987 55666666553332 78999999 8999999999998888863
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-15 Score=140.07 Aligned_cols=173 Identities=14% Similarity=0.243 Sum_probs=122.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|+.++-..+.|+.|.+=+..+ ..++.+....+..=-.+.|||||||||||++.-|+|+.+.. .+..++
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F---~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------dIydLe 267 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDF---IKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------DIYDLE 267 (457)
T ss_pred CCccccccChhHHHHHHHHHHHH---HhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------ceEEee
Confidence 66778888888888877643322 23444444455444568999999999999999999998876 444444
Q ss_pred cccccccccccchhhHHHHHHhcCC-cEEEEecccccccCCC--CC----CC-hhHHHHHHHHHhhhcC------CcEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPMQK--AD----DK-DYGIEALEEIMSVMDG------GKVVV 348 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~-~vl~iDE~d~l~~~~~--~~----~~-~~~~~~~~~ll~~l~~------~~~~v 348 (482)
-++ ++.... ++.++..+.+ +||+|.+||.-...+. .. .. ....-.++-||..+|+ +..+|
T Consensus 268 Lt~-----v~~n~d-Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 268 LTE-----VKLDSD-LRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred ecc-----ccCcHH-HHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 333 222333 8888877765 9999999998754222 11 11 1233567889999986 35566
Q ss_pred EEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 349 IFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
|+||+ -.+.+ ||||.| |+|..|+++..+.++...++..++.-.
T Consensus 342 vFTTN--h~EkL---DPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 342 VFTTN--HKEKL---DPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred EEecC--Chhhc---CHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 66633 23334 999988 999999999999999999999998763
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=131.63 Aligned_cols=129 Identities=37% Similarity=0.497 Sum_probs=113.0
Q ss_pred cCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCC-----HHHHHHHHhCCC---Ccc
Q 011578 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC-----NEAAKLLLAHGA---FIE 112 (482)
Q Consensus 41 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~ga---~~~ 112 (482)
...+.. +.+++|+++..+...++++++. .+++++.+|..|.||||+|+..++ .+++++|++.|+ +.+
T Consensus 67 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 141 (235)
T COG0666 67 AARDLD-GRLPLHSAASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN 141 (235)
T ss_pred ccCCcc-ccCHHHHHHHcCcHHHHHHHHH----cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc
Confidence 333443 8899999999999999999998 688899999999999999999999 999999999999 566
Q ss_pred ccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhh
Q 011578 113 AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 113 ~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (482)
.+|..|+||||+|+ ..|+.+++.+|++.|++++..+..|.|++ +.+...+...+...+...+
T Consensus 142 ~~~~~g~tpl~~A~----~~~~~~~~~~ll~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 142 LRDEDGNTPLHWAA----LNGDADIVELLLEAGADPNSRNSYGVTAL-DPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred ccCCCCCchhHHHH----HcCchHHHHHHHhcCCCCcccccCCCcch-hhhcccchHHHHHHHHhcC
Confidence 67999999999999 88888999999999999999999999999 5555667777777777665
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-14 Score=127.75 Aligned_cols=187 Identities=12% Similarity=0.175 Sum_probs=121.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
..+++|+||||||||.+++++++.+...+. .+..++...... + ...+.+.++. ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~----~v~y~~~~~~~~-~----~~~~~~~~~~--~dlliiDdi~~~~~~~ 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGR----AVGYVPLDKRAW-F----VPEVLEGMEQ--LSLVCIDNIECIAGDE 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCC----eEEEEEHHHHhh-h----hHHHHHHhhh--CCEEEEeChhhhcCCH
Confidence 357999999999999999999998875321 233333322111 0 1112222222 3689999999886532
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+ ....+.+.+...++.++..+|++++..+.. .-...|.|++|+. .++++.+|+.+++.++++......
T Consensus 114 ~-----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~-l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~---- 183 (235)
T PRK08084 114 L-----WEMAIFDLYNRILESGRTRLLITGDRPPRQ-LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR---- 183 (235)
T ss_pred H-----HHHHHHHHHHHHHHcCCCeEEEeCCCChHH-cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc----
Confidence 1 112333445555666765566666544433 2223699999994 899999999999999998866542
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
+ ..++++++..++.+. .++.|.+.++++...... +. ....||.+-+++++
T Consensus 184 ---~----~~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~---l~-------~~~~it~~~~k~~l 233 (235)
T PRK08084 184 ---G----FELPEDVGRFLLKRL-------DREMRTLFMTLDQLDRAS---IT-------AQRKLTIPFVKEIL 233 (235)
T ss_pred ---C----CCCCHHHHHHHHHhh-------cCCHHHHHHHHHHHHHHH---Hh-------cCCCCCHHHHHHHH
Confidence 2 357889999999987 678899999988853221 11 11347777777665
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-15 Score=144.28 Aligned_cols=154 Identities=26% Similarity=0.405 Sum_probs=103.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHH-------------
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY------------- 268 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~------------- 268 (482)
..+|.|++|++..|+.+.-. +...++++|+||||||||++|+.+...+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA------------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I 236 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA------------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAI 236 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH------------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHH
Confidence 34789999999999998854 34678999999999999999999977551
Q ss_pred --HcC-------CCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 269 --MVG-------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 269 --~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
..+ .....||..-+.+.-....+|........-+..|++|||||||+- ++.+.+++.|.+
T Consensus 237 ~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElp-----------ef~~~iLe~LR~ 305 (490)
T COG0606 237 HSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELP-----------EFKRSILEALRE 305 (490)
T ss_pred hhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccc-----------hhhHHHHHHHhC
Confidence 001 222344554444443444555543333345577899999999984 445599999999
Q ss_pred hhcCCcEEEEEec----CchhHHHHHhcC-----------------------------ccccCCCcceeeCCCCCHHH
Q 011578 340 VMDGGKVVVIFAG----YSEPMKRVIASN-----------------------------EGFCRRVTKFFHFNDFNSEE 384 (482)
Q Consensus 340 ~l~~~~~~vi~~~----~~~~~~~~~~~~-----------------------------~~l~~R~~~~i~~~~~~~~~ 384 (482)
-|++++++|--++ ++..+..+.++| .+|++|+|..++++.++..+
T Consensus 306 PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 306 PLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred ccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 9999776444333 112222222222 56888999999999887433
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=125.91 Aligned_cols=173 Identities=23% Similarity=0.281 Sum_probs=122.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+.+|+|.++..+++.-+.. ...-+++++.|||||||||-+.+||+++- |......+++++
T Consensus 24 ~~l~dIVGNe~tv~rl~via~----------------~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~ke~vLELN 85 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK----------------EGNMPNLIISGPPGTGKTTSILCLARELL--GDSYKEAVLELN 85 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH----------------cCCCCceEeeCCCCCchhhHHHHHHHHHh--ChhhhhHhhhcc
Confidence 467899999999998886532 23457899999999999999999999983 434445788999
Q ss_pred cccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
+|+-.+--+ .++.-+.|.+. ++.|+++||+|++....| +++..-++...+...+..+|+..+
T Consensus 86 ASdeRGIDv---VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ--------QAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 86 ASDERGIDV---VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ--------QALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CccccccHH---HHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH--------HHHHHHHHHHcccchhhhhhcchh
Confidence 887544322 23333556543 348999999999987655 666666666666666666676666
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
.+. +++.+|+ ..++|..++..++..-+....+.+. ..++++.|+.+..-
T Consensus 155 KIi------EPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ek-----------v~yt~dgLeaiift 203 (333)
T KOG0991|consen 155 KII------EPIQSRC-AILRYSKLSDQQILKRLLEVAKAEK-----------VNYTDDGLEAIIFT 203 (333)
T ss_pred hhh------hhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhC-----------CCCCcchHHHhhhh
Confidence 653 4566788 7888899998887766666555432 34566777777654
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=131.04 Aligned_cols=127 Identities=30% Similarity=0.362 Sum_probs=115.0
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc-----HHHHHHHHcCCCCCCc---cccc
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK-----AEIVKSLLEWPGNDKV---ELEA 80 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~~~~~---~~~~ 80 (482)
....+.+++|.++..++...+..++. .+.+++..+.. |.||||+|+..|+ .+++++|++. ++ ..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~ll~~----g~~~~~~~~ 142 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAKDAD-GDTPLHLAALNGNPPEGNIEVAKLLLEA----GADLDVNNL 142 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHHH-cCCCcccccCC-CCcHHHHHHhcCCcccchHHHHHHHHHc----CCCCCCccc
Confidence 34558899999999999999987775 45666888886 9999999999999 9999999994 55 6677
Q ss_pred CcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC
Q 011578 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (482)
Q Consensus 81 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g 145 (482)
+|..|+||||+|+..|+.+++++|++.|++++.++..|.|++++|+ ..++.+++..++..+
T Consensus 143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~----~~~~~~~~~~l~~~~ 203 (235)
T COG0666 143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA----KNGRIELVKLLLDKG 203 (235)
T ss_pred cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhc----ccchHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999 899999999999876
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=138.16 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=116.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~ 320 (482)
..+++||||||+|||.|++++++.+...+ ..++.++...+...+...-.....+.|.. ....||+|||++.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~----~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESG----GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence 35699999999999999999999986532 35677776655443322111111122332 2347999999999865
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC-chhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
+.. ....+...+-...+.+..+|+.++. +..+..+ ++.+.+|| ...+.+++|+.+++..|++..+....
T Consensus 217 k~~-----~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l---~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 217 KGA-----TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM---EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred Chh-----hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh---HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 321 1112222222223456656665544 3333333 78899999 47999999999999999999887532
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++++++..++... .+|.|.+.+.++..+.
T Consensus 289 -----------~~l~~evl~~la~~~-------~~dir~L~g~l~~l~~ 319 (445)
T PRK12422 289 -----------IRIEETALDFLIEAL-------SSNVKSLLHALTLLAK 319 (445)
T ss_pred -----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHH
Confidence 457889999999876 5788899888887753
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-14 Score=127.40 Aligned_cols=185 Identities=13% Similarity=0.187 Sum_probs=117.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC-CcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~vl~iDE~d~l~~~~ 322 (482)
+.++|+||||||||.+++++|+++...+. +..++..+... ....+.++... ..+|+|||++.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~--~~~y~~~~~~~----------~~~~~~~~~~~~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQR--TAIYIPLSKSQ----------YFSPAVLENLEQQDLVCLDDLQAVIGNE 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeEEeeHHHhh----------hhhHHHHhhcccCCEEEEeChhhhcCCh
Confidence 45899999999999999999999865432 22333322111 11123333333 4799999999987532
Q ss_pred CCCCChhHHHHHHHHHhhh-cCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccccc
Q 011578 323 KADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED 399 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l-~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~ 399 (482)
. ....+-.++..+ +.+..+++++++..+.. +-...|.+.+|+ +..+.+++|+.+++.+|++..+....
T Consensus 108 ~------~~~~l~~l~n~~~~~~~~illits~~~p~~-l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-- 178 (229)
T PRK06893 108 E------WELAIFDLFNRIKEQGKTLLLISADCSPHA-LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-- 178 (229)
T ss_pred H------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH-ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC--
Confidence 2 122333333333 34554444443332222 111257888877 56999999999999999998876532
Q ss_pred cccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 400 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
..++++++..++++. .++.|.+.++++...... + .+...||...+++.+.
T Consensus 179 ---------l~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~---~-------~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 179 ---------IELSDEVANFLLKRL-------DRDMHTLFDALDLLDKAS---L-------QAQRKLTIPFVKEILG 228 (229)
T ss_pred ---------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHH---H-------hcCCCCCHHHHHHHhc
Confidence 466889999999876 578888888888753221 1 1123588888777663
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=149.19 Aligned_cols=205 Identities=19% Similarity=0.230 Sum_probs=145.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
+.+++|.......+.+.+..+ ......+++.|++|||||++|++++.. ......+|+.++++
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~--------------~~~~~~vli~Ge~GtGK~~lA~~ih~~----s~~~~~~~i~i~c~ 198 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL--------------SRSSISVLINGESGTGKELVAHALHRH----SPRAKAPFIALNMA 198 (469)
T ss_pred cccceecCHHHHHHHHHHHHH--------------hccCCeEEEEeCCCCcHHHHHHHHHhc----CCCCCCCeEeeeCC
Confidence 446777776655555543322 235567999999999999999999984 44456799999998
Q ss_pred cccc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------
Q 011578 285 DLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------- 345 (482)
Q Consensus 285 ~~~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 345 (482)
.+.. ..+|+... .....|+.+.+|.|||||++.|....| ..|++.++.+.
T Consensus 199 ~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 199 AIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQ-----------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred CCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHH-----------HHHHHHHhcCcEEeCCCC
Confidence 7632 23454221 112346778889999999999998555 77888877543
Q ss_pred ------EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 346 ------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 346 ------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
+.+|++++.+....+.. -.+.|..|+ ...|.+|++.. +++..+++.++++.... ++.. ...++++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~~~~~ 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE---LGVE-AKLLHPE 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH---cCCC-CCCcCHH
Confidence 47777776654332211 125566677 57788888774 89999999999876431 1212 2468999
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++..+..+.| +||.++|+++++++....
T Consensus 344 a~~~L~~~~w------pgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 344 TEAALTRLAW------PGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999998754
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=142.62 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=156.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++-++|.+.-++++-+.+. -....+-+|.|+||+|||.++..+|..+-.. -.+....++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~----------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILS----------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCCCCcChHHHHHHHHHHHh----------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 35557888876666665421 1244578899999999999999999988531 1233456677
Q ss_pred eeccccc--ccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
++-+.++ .+|-|+-+.+++.++++.. ..||||||++.+.......+ + ...+-|-|...+..|.+.+|+|||-+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhcCCeEEEEeccHH
Confidence 7766654 4589999999999887543 68999999999987554322 2 45777999999999999999999999
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
.+...++.|+||.||| ..|.+..|+.++-..||+-.-.+.. .-....+++++|.+-...+.+ ....|
T Consensus 310 EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE-------~hH~V~i~D~Al~aAv~LS~R-----YI~dR 376 (786)
T COG0542 310 EYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYE-------AHHGVRITDEALVAAVTLSDR-----YIPDR 376 (786)
T ss_pred HHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHH-------HccCceecHHHHHHHHHHHHh-----hcccC
Confidence 9999999999999999 9999999999999999987544332 223345677777666554321 11222
Q ss_pred hh----HHHHHHHHHHhhh
Q 011578 436 LV----DPMLVNARENLDL 450 (482)
Q Consensus 436 ~l----~~~~~~a~~~~~~ 450 (482)
.+ -.+++.|......
T Consensus 377 ~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 377 FLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred CCCchHHHHHHHHHHHHHh
Confidence 22 3556666666543
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-14 Score=134.45 Aligned_cols=160 Identities=21% Similarity=0.243 Sum_probs=107.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV---- 278 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~---- 278 (482)
-.|.+++|++++|..|.-.. -.....++||.||+|||||++||++++.+.........+|
T Consensus 14 ~pf~~ivGq~~~k~al~~~~----------------~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNV----------------IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCHHHHhChHHHHHHHHHhc----------------cCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 35789999999999888541 1124568999999999999999999998875443332222
Q ss_pred -----------------------------EEeecccccccccccc--hhh--------HHHHHHhcCCcEEEEecccccc
Q 011578 279 -----------------------------TEVQRTDLVGEFVGHT--GPK--------TRRRIKEAEGGILFVDEAYRLI 319 (482)
Q Consensus 279 -----------------------------~~~~~~~~~~~~~g~~--~~~--------~~~~~~~a~~~vl~iDE~d~l~ 319 (482)
+.+....-....+|.- ++. -...+.+|.++||||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 2222221222233320 000 1234567788999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HH
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SE 383 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~ 383 (482)
++.| +.|++.|+++. ++++++.++.. .. ..+++.+||...+.+..|+ ++
T Consensus 158 ~~~Q-----------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e-g~---l~~~LldRf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 DHLV-----------DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGMHAEIRTVKDPE 222 (350)
T ss_pred HHHH-----------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc-CC---CCHHHHHHhCceeecCCCCChH
Confidence 8555 77888886532 34444433332 12 2788999999999999998 69
Q ss_pred HHHHHHHHHH
Q 011578 384 ELAKILHIKM 393 (482)
Q Consensus 384 ~~~~il~~~l 393 (482)
++.+|+++..
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998754
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-14 Score=144.11 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=126.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.|..++.. ...+..+||+||||+|||++|+++|+.+........
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~---------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE---------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 4688999999999998876321 112345799999999999999999998864221110
Q ss_pred -----------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 276 -----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 276 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
..+++++++.. . ....++++.+. +...||||||+|.|.. ..++.|
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~----~--~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naL 140 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASH----T--SVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNAL 140 (585)
T ss_pred HHHHHHhcCCCCeEEEEecccc----C--CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHH
Confidence 11233332211 1 11233443322 3458999999999975 455889
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+..|++ ...++|++++. ...+ .+.+++|+ ..+.|+.++.+++..+++..+.+.. ..++.++
T Consensus 141 Lk~LEepp~~tv~Il~t~~--~~kl---l~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg-----------l~i~~ea 203 (585)
T PRK14950 141 LKTLEEPPPHAIFILATTE--VHKV---PATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG-----------INLEPGA 203 (585)
T ss_pred HHHHhcCCCCeEEEEEeCC--hhhh---hHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 34455554322 2223 46678888 7899999999999999988877643 3467788
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+..++... .|+.+.+.+.+++...
T Consensus 204 l~~La~~s-------~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 204 LEAIARAA-------TGSMRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88888755 5677788888776543
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-14 Score=139.22 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=117.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch----hhHHHHHHhcCCcEEEEeccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEAEGGILFVDEAYRL 318 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a~~~vl~iDE~d~l 318 (482)
...++|+||||+|||.|++++++++.... ....++.+++.++...++.... ....+.+. ...+|+|||++.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l 211 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFL 211 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhh
Confidence 45689999999999999999999986531 1235677777666544433211 11222222 2469999999998
Q ss_pred ccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC-chhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhc
Q 011578 319 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
..+.. ....++..|-...+.+..+|++++. +..+..+ ++.+.+||. ..+.|++|+.++|..|++..++.
T Consensus 212 ~~~~~-----~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 212 AGKER-----TQEEFFHTFNALHENGKQIVLTSDRPPKELPGL---EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred cCCHH-----HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh---hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 75321 1112333333334456655655543 2333333 788999995 47999999999999999998876
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 396 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.. ..++++.+..++... .++.|.+..++.+....+
T Consensus 284 ~~-----------~~l~~e~l~~ia~~~-------~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 284 EG-----------LELPDEVLEFIAKNI-------RSNVRELEGALNRLLAYA 318 (405)
T ss_pred cC-----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHH
Confidence 42 456889999999865 578888888887765543
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=143.29 Aligned_cols=189 Identities=16% Similarity=0.252 Sum_probs=132.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.|...+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~---------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT---------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 5789999999999998877431 1133448999999999999999999988632111
Q ss_pred ---------CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 274 ---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 274 ---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
....++.+++.+. .+...++++++++ ...|++|||+|.|.. .+.+.|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naL 141 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAF 141 (614)
T ss_pred hHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHH
Confidence 1123333433211 1123455555433 347999999999976 445899
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+..|++ ...++|++++.. ..+ .+++++|+ ..++|.+++.+++...++..+.++. ..++.++
T Consensus 142 LK~LEepp~~tifIL~tt~~--~kI---l~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg-----------i~i~~~a 204 (614)
T PRK14971 142 LKTLEEPPSYAIFILATTEK--HKI---LPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG-----------ITAEPEA 204 (614)
T ss_pred HHHHhCCCCCeEEEEEeCCc--hhc---hHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 445566655432 223 67889998 8899999999999999998887653 3457788
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+..++... .++.|.+.+.++.....
T Consensus 205 l~~La~~s-------~gdlr~al~~Lekl~~y 229 (614)
T PRK14971 205 LNVIAQKA-------DGGMRDALSIFDQVVSF 229 (614)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 88888765 56777787887776543
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=139.19 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=106.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc-------------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV------------- 270 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~------------- 270 (482)
.|+++.|+..+++.+.-. .....+++|.||||||||++|+.++..+...
T Consensus 190 d~~dv~Gq~~~~~al~~a------------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s 251 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA------------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS 251 (499)
T ss_pred CHHHhcCcHHHHhhhhhh------------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence 688999999887766532 2355789999999999999999999754210
Q ss_pred --------CCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 271 --------GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 271 --------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
+.....||...+.+......+|.........+..|.+|||||||++.+.+ .++..|++.|+
T Consensus 252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~-----------~~~~~L~~~LE 320 (499)
T TIGR00368 252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR-----------SVLDALREPIE 320 (499)
T ss_pred chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH-----------HHHHHHHHHHH
Confidence 01223466655555444444554322334567889999999999998876 55588888887
Q ss_pred CCc---------------EEEEEecCchh---H---------------HHHHhcCccccCCCcceeeCCCCCHHHH
Q 011578 343 GGK---------------VVVIFAGYSEP---M---------------KRVIASNEGFCRRVTKFFHFNDFNSEEL 385 (482)
Q Consensus 343 ~~~---------------~~vi~~~~~~~---~---------------~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 385 (482)
.+. +.+|+++++.+ + .......++|++|||..+.++.++.+++
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 643 57788876542 0 0112346889999999999998876543
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-14 Score=141.07 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=119.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-h-cCCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-E-AEGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-a~~~vl~iDE~d~l~~ 320 (482)
..+++|+||||||||.|++++++++...+ ....++.+++.++...++........+.|. . ....+|+|||++.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC
Confidence 35699999999999999999999987532 123567777777655544332111112222 1 1347999999999865
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch-hHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE-PMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~-~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
+.. ....++..|-...+.+..++++++.+. .+..+ +|.+.+||. ..++|.+|+.+++..|++..+....
T Consensus 226 ~~~-----~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~ 297 (450)
T PRK00149 226 KER-----TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL---EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG 297 (450)
T ss_pred CHH-----HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH---HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC
Confidence 321 112333334344455666666554432 22223 688999994 5899999999999999999887532
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++++.+..++... .++.|.+..++......
T Consensus 298 -----------~~l~~e~l~~ia~~~-------~~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 298 -----------IDLPDEVLEFIAKNI-------TSNVRELEGALNRLIAY 329 (450)
T ss_pred -----------CCCCHHHHHHHHcCc-------CCCHHHHHHHHHHHHHH
Confidence 457889999999876 57888888888877654
|
|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=127.77 Aligned_cols=207 Identities=16% Similarity=0.235 Sum_probs=146.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|+.+++.+...+.+.+....+ +.-...+|+.|..||||-++||+.+. .....+.||+.+
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~--------------AmlDAPLLI~GeTGTGKdLlAkaCH~----~S~R~~~pFlal 261 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKL--------------AMLDAPLLITGETGTGKDLLAKACHL----ASPRHSKPFLAL 261 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHh--------------hccCCCeEEecCCCchHHHHHHHHhh----cCcccCCCeeEe
Confidence 356777888877666665543322 12345799999999999999999887 455667899999
Q ss_pred eccccc-----ccccccch--hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 282 QRTDLV-----GEFVGHTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 282 ~~~~~~-----~~~~g~~~--~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
+|+.+. ++.+|+.. .--...|+.|.+|.+|+|||..+.+.-| ..||..+.+|
T Consensus 262 NCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQ-----------aKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 262 NCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQ-----------AKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred ecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHH-----------HHHHHHhcCCceeecCCcce
Confidence 998764 33566543 2345689999999999999999998544 8899999764
Q ss_pred ---cEEEEEecCchhHHHHHhc---CccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIAS---NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~---~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+|.||+||..+-.+.. +. ...+..|. -..+++|++-. +++..+.+.++.+..... + ...+.++.+.
T Consensus 331 v~vdVRVIcatq~nL~~lv-~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~el---g-~p~pkl~~~~ 405 (511)
T COG3283 331 VHVDVRVICATQVNLVELV-QKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDEL---G-VPRPKLAADL 405 (511)
T ss_pred EEEEEEEEecccccHHHHH-hcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHh---C-CCCCccCHHH
Confidence 3688888766554322 11 12233344 22444454442 677777777776654321 2 3447889999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+..+.++.| +||.|+++|++-+|+...
T Consensus 406 ~~~L~~y~W------pGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 406 LTVLTRYAW------PGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHHcCC------CccHHHHHHHHHHHHHHh
Confidence 999999999 999999999999998763
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=145.58 Aligned_cols=205 Identities=17% Similarity=0.179 Sum_probs=142.3
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
+..++|.....+.+.+.+..+ .....+++++|++||||+++|++++... .....+|+.++++
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s----~~~~~~~v~v~c~ 199 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI--------------APSDITVLLLGESGTGKEVLARALHQLS----DRKDKRFVAINCA 199 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhC----CcCCCCeEEEECC
Confidence 345677766666565543322 1345679999999999999999999843 3445689999988
Q ss_pred ccccc-----ccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--------
Q 011578 285 DLVGE-----FVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 344 (482)
Q Consensus 285 ~~~~~-----~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------- 344 (482)
.+... .+|+.. ......|+.+.+|+|||||++.|.+..| ..|++.++++
T Consensus 200 ~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q-----------~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 200 AIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQ-----------AKLLRFLQERVIERLGGR 268 (445)
T ss_pred CCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHH-----------HHHHHHHhhCeEEeCCCC
Confidence 76332 344311 1123356778899999999999998555 7788887653
Q ss_pred -----cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 345 -----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 345 -----~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
.+.+|++++.+....... -.+.|..|+ ...|.+|++.. +++..+++.++.+.... ++. -...++++
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~---~~~-~~~~~~~~ 344 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARE---LKR-KTKGFTDD 344 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHH---hCC-CCCCCCHH
Confidence 357777776654332210 123344555 45677777764 78888999888876431 111 12468999
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++..+..+.| +||.+++++++++|+...
T Consensus 345 a~~~L~~~~w------pgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 345 ALRALEAHAW------PGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999998754
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=136.72 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=144.8
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---CCcEEEEeccc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAY 316 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d 316 (482)
...+.+++++||+|+|||.|++++++++... .-..+..++++.+.++.+....+.+..+|.++ .++||++|.+|
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~---~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKD---LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccc---cceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchh
Confidence 3466789999999999999999999988632 22356678888888777766777778888775 56999999999
Q ss_pred ccccCCC--CCCChhHHHHHHHHH----hhhc-C-CcEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHH
Q 011578 317 RLIPMQK--ADDKDYGIEALEEIM----SVMD-G-GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELA 386 (482)
Q Consensus 317 ~l~~~~~--~~~~~~~~~~~~~ll----~~l~-~-~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~ 386 (482)
.+..... +++......-+..++ ..+- . ..+.+|+++ +....+ +|-|.+ +|+.++.+|.|...+|.
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~--qe~qtl---~~~L~s~~~Fq~~~~L~ap~~~~R~ 579 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG--QELQTL---NPLLVSPLLFQIVIALPAPAVTRRK 579 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec--hhhhhc---ChhhcCccceEEEEecCCcchhHHH
Confidence 9987322 223333333334444 3322 2 445666663 333322 555544 88999999999999999
Q ss_pred HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh-hhhcCCCCChhhhhcc
Q 011578 387 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDELRTI 465 (482)
Q Consensus 387 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~-~r~~~~~~~~~~~~~i 465 (482)
+||+..+++.. ..+..+.|.-++...- ++...++.-.+++|.-.+. .|+.. ....+
T Consensus 580 ~IL~~~~s~~~-----------~~~~~~dLd~ls~~TE------Gy~~~DL~ifVeRai~~a~leris~------~~kll 636 (952)
T KOG0735|consen 580 EILTTIFSKNL-----------SDITMDDLDFLSVKTE------GYLATDLVIFVERAIHEAFLERISN------GPKLL 636 (952)
T ss_pred HHHHHHHHhhh-----------hhhhhHHHHHHHHhcC------CccchhHHHHHHHHHHHHHHHHhcc------Ccccc
Confidence 99999998743 2233444444443332 4557888888888877653 23321 12379
Q ss_pred cHHHHHHHHHHHHhcC
Q 011578 466 TLEDLEAGLKLLLRLG 481 (482)
Q Consensus 466 ~~~d~~~al~~~~~~~ 481 (482)
|.++|.++|+.+.|.-
T Consensus 637 tke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLA 652 (952)
T ss_pred hHHHHHHHHHhcChHH
Confidence 9999999999988863
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-14 Score=141.31 Aligned_cols=207 Identities=19% Similarity=0.212 Sum_probs=144.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC---CcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~ 319 (482)
...+||+|+||||||++.++.|++++. +++++++.++.....++++.++...|..|+ ++||||-.+|.+.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~-------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGL-------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG 503 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCC-------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee
Confidence 456999999999999999999999998 999999999999999999999999998875 4899999999998
Q ss_pred cCCCCCCChhHHHHHHHHHhh----hcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 320 PMQKADDKDYGIEALEEIMSV----MDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~----l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
-++..+.+--...+++.++.. .....++||+++++. +.+ .+.+++-|-..|.++.|+.+||.+||+.++..
T Consensus 504 id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~--~~l---p~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 504 IDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSI--EDL---PADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred ecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccc--ccC---CHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 654432222334555666651 122567777775443 333 77788888899999999999999999999887
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhc-----C------CCCChhhhhc
Q 011578 396 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS-----F------DCLDTDELRT 464 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~-----~------~~~~~~~~~~ 464 (482)
.. +..++....++..+.+.+.. ++..++......+..|+. . +.........
T Consensus 579 ~~---------~n~~v~~k~~a~~t~gfs~~---------~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~ 640 (953)
T KOG0736|consen 579 LP---------LNQDVNLKQLARKTSGFSFG---------DLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFL 640 (953)
T ss_pred cc---------cchHHHHHHHHHhcCCCCHH---------HHHHHhcCchHHHHHHHHhhcccccchhccccccccccce
Confidence 64 33344444444444444322 233333222222211221 1 1111122468
Q ss_pred ccHHHHHHHHHHHHh
Q 011578 465 ITLEDLEAGLKLLLR 479 (482)
Q Consensus 465 i~~~d~~~al~~~~~ 479 (482)
++++||..|+.++++
T Consensus 641 l~~edf~kals~~~~ 655 (953)
T KOG0736|consen 641 LTEEDFDKALSRLQK 655 (953)
T ss_pred ecHHHHHHHHHHHHH
Confidence 999999999998875
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=126.14 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=142.7
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
+.+.+...+++...+... +....|.+++++||||||||.+++.+.+++....... .++.+++-...
T Consensus 19 l~~Re~ei~~l~~~l~~~------------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~--~~~yINc~~~~ 84 (366)
T COG1474 19 LPHREEEINQLASFLAPA------------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV--EVVYINCLELR 84 (366)
T ss_pred ccccHHHHHHHHHHHHHH------------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC--ceEEEeeeeCC
Confidence 556666666666553333 2234666799999999999999999999997632211 26778876532
Q ss_pred cc---------------ccccchhhH----HHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--c
Q 011578 288 GE---------------FVGHTGPKT----RRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--K 345 (482)
Q Consensus 288 ~~---------------~~g~~~~~~----~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~ 345 (482)
+. ..|.+...+ .+.+... ..-||.+||+|.|..+.+ +++-.|+...+.. +
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~~~~ 156 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGENKVK 156 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccccee
Confidence 22 112222222 2222221 237889999999998655 5666666666554 4
Q ss_pred EEEEEecCchhHHHHHhcCccccCCC-cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 346 VVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 346 ~~vi~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
+.+|+.++...+... .+|.+.+++ +..|.||+++.+|+..|++...+.. +. ...++++.+...+...
T Consensus 157 v~vi~i~n~~~~~~~--ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--------~~-~~~~~~~vl~lia~~~- 224 (366)
T COG1474 157 VSIIAVSNDDKFLDY--LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--------FS-AGVIDDDVLKLIAALV- 224 (366)
T ss_pred EEEEEEeccHHHHHH--hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--------cc-CCCcCccHHHHHHHHH-
Confidence 556665444443332 388999988 6779999999999999999987742 21 2334555554444322
Q ss_pred hHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 425 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
....|++|....+++.|.+.+- .+....++.+++..|...+
T Consensus 225 ---a~~~GDAR~aidilr~A~eiAe---------~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 225 ---AAESGDARKAIDILRRAGEIAE---------REGSRKVSEDHVREAQEEI 265 (366)
T ss_pred ---HHcCccHHHHHHHHHHHHHHHH---------hhCCCCcCHHHHHHHHHHh
Confidence 1224578888888888888762 2334577888888775444
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=144.84 Aligned_cols=231 Identities=22% Similarity=0.170 Sum_probs=142.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC-------------
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG------------- 271 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~------------- 271 (482)
|..|+|++.++..+.-.. + .....++||.||||||||++|++|++.+....
T Consensus 3 f~~ivGq~~~~~al~~~a--v--------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~ 66 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNA--V--------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDD 66 (633)
T ss_pred cchhcChHHHHHHHHHHh--h--------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCC
Confidence 567999999997776431 1 12346799999999999999999999872100
Q ss_pred ---------------CCCCCCeEEeecccccccccccc--------hh--hHHHHHHhcCCcEEEEecccccccCCCCCC
Q 011578 272 ---------------ILPTDRVTEVQRTDLVGEFVGHT--------GP--KTRRRIKEAEGGILFVDEAYRLIPMQKADD 326 (482)
Q Consensus 272 ---------------~~~~~~~~~~~~~~~~~~~~g~~--------~~--~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~ 326 (482)
.....+|+.+..+.....++|.. +. .....+.+|.++||||||++.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 67 PEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH----- 141 (633)
T ss_pred ccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-----
Confidence 01135777776655444555541 11 1133566778899999999999984
Q ss_pred ChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHHHHHHHH
Q 011578 327 KDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH 390 (482)
Q Consensus 327 ~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~ 390 (482)
+++.|++.|+.+. +++|++.++..- . ..++|.+||+..+.++.+. .+++.++++
T Consensus 142 ------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg-~---l~~~L~dR~~l~i~v~~~~~~~~~~~il~ 211 (633)
T TIGR02442 142 ------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG-D---LRPQLLDRFGLCVDVAAPRDPEERVEIIR 211 (633)
T ss_pred ------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC-C---CCHHHHhhcceEEEccCCCchHHHHHHHH
Confidence 4488999998653 566666554321 1 2678999999999988775 577788887
Q ss_pred HHHhcccccc-c-----------------cccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 391 IKMNNQTEDS-L-----------------LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 391 ~~l~~~~~~~-~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
..+....... . ...+.-...++.+.+..+...+.... ....|....+++.|...++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~---i~s~Ra~i~~~r~Ara~AaL-- 286 (633)
T TIGR02442 212 RRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFG---VDGHRADIVMARAARALAAL-- 286 (633)
T ss_pred HHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHHH--
Confidence 6443111000 0 00001113446666666655543110 11223444444444444322
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+....|+.+|+.+|+.-+-
T Consensus 287 -------~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 287 -------DGRRRVTAEDVREAAELVL 305 (633)
T ss_pred -------cCCCcCCHHHHHHHHHHHh
Confidence 3446899999999987764
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=130.02 Aligned_cols=230 Identities=18% Similarity=0.187 Sum_probs=132.6
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc-------CC-CCC-
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV-------GI-LPT- 275 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~-------~~-~~~- 275 (482)
|..|+|++.+|..+.-.. + .....++++.|+||+|||+++++++..+... .- ...
T Consensus 3 f~~ivgq~~~~~al~~~~--~--------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNV--I--------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSD 66 (337)
T ss_pred ccccccHHHHHHHHHHHh--c--------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCC
Confidence 567899999998876431 1 1235789999999999999999999887320 00 000
Q ss_pred ------------------------CCeEEeecccccccccccc--------hhh--HHHHHHhcCCcEEEEecccccccC
Q 011578 276 ------------------------DRVTEVQRTDLVGEFVGHT--------GPK--TRRRIKEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 276 ------------------------~~~~~~~~~~~~~~~~g~~--------~~~--~~~~~~~a~~~vl~iDE~d~l~~~ 321 (482)
.+|..+........++|.. +.. -..++.++.+++|||||++.+.++
T Consensus 67 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 67 PEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH 146 (337)
T ss_pred ccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH
Confidence 1112211111111344431 111 123556778899999999999874
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EEL 385 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~ 385 (482)
.| +.|++.|+++. ++++++.++.. .. ..+++.+||...+.++.|+. +++
T Consensus 147 ~Q-----------~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e-g~---l~~~LldRf~l~i~l~~p~~~eer 211 (337)
T TIGR02030 147 LV-----------DVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGLHAEIRTVRDVELR 211 (337)
T ss_pred HH-----------HHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc-CC---CCHHHHhhcceEEECCCCCCHHHH
Confidence 44 88888887643 34444433321 12 27889999999999999986 888
Q ss_pred HHHHHHHHhccccccc------------------cccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 386 AKILHIKMNNQTEDSL------------------LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 386 ~~il~~~l~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.+|++........... ....--...++++.+..++.-..... ...-|.-..++..|...
T Consensus 212 ~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~---~~s~Ra~i~l~raArA~ 288 (337)
T TIGR02030 212 VEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELD---VDGLRGELTLNRAAKAL 288 (337)
T ss_pred HHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHH
Confidence 9999874332100000 00001123345555555554332111 11224445555555554
Q ss_pred hhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 448 LDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 448 ~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
++. +....|+.+|+..+..-+
T Consensus 289 Aal---------~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 289 AAF---------EGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHH---------cCCCCCCHHHHHHHHHHH
Confidence 422 234578999998877654
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-13 Score=133.61 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=116.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch-hhHHHHHHhc--CCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA--EGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a--~~~vl~iDE~d~l~ 319 (482)
..+++||||||+|||.|++++++.+..... ...++.+++.++...++.... ..+.+..+.. ...+|+|||++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~--~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP--DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc
Confidence 346999999999999999999998864221 235666777665544432110 1111222221 35799999999886
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC-chhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
.+.. ...+.+..+-...+.+..+|++++. +..+..+ .+.+.+|| ...+.+.+|+.+++..|++..+...
T Consensus 208 ~~~~-----~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l---~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 208 GKTG-----VQTELFHTFNELHDSGKQIVICSDREPQKLSEF---QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred CcHH-----HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH---HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 5321 1123334444444556655555532 2333333 67889999 4588999999999999999987753
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 397 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
. ..++++.+..++... .+|.|.+..++.+....
T Consensus 280 ~-----------~~l~~ev~~~Ia~~~-------~~~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 280 H-----------GELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVY 312 (440)
T ss_pred C-----------CCCCHHHHHHHHhcc-------ccCHHHHHHHHHHHHHH
Confidence 2 356788888888876 57888888888776543
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=140.80 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=142.0
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.++|.+.....+.+.+... ......+++.|++||||+++|++++.. +.....+|+.+++..+
T Consensus 135 ~lig~s~~~~~v~~~i~~~--------------a~~~~~vli~Ge~GtGK~~~A~~ih~~----~~~~~~~~~~~~c~~~ 196 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL--------------SRSDITVLINGESGTGKELVARALHRH----SPRANGPFIALNMAAI 196 (463)
T ss_pred ceeecCHHHHHHHHHHHHH--------------hCcCCeEEEECCCCCCHHHHHHHHHHh----CCCCCCCeEEEeCCCC
Confidence 4677766655555543322 134567999999999999999999984 3344679999998765
Q ss_pred ccc-----ccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 287 VGE-----FVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 287 ~~~-----~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
... .+|+... .....|+.+.+|+||||||+.|....| ..|++.++.+
T Consensus 197 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q-----------~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 197 PKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQ-----------TRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred CHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHH-----------HHHHHHHhcCcEEECCCCce
Confidence 332 3443211 112346677889999999999988555 7777777653
Q ss_pred ---cEEEEEecCchhHHHHHhc---CccccCCCc-ceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIAS---NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~---~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
.+.+|++++.+....+ .. .+.|..|+. ..|++|++. .+++..+++.++.+.... ++. -...+++++
T Consensus 266 ~~~~~rii~~~~~~l~~~~-~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~---~~~-~~~~~~~~a 340 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALV-RQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARE---LDV-EPKLLDPEA 340 (463)
T ss_pred eeeeeEEEEeCCCCHHHHH-HcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHH---hCC-CCCCcCHHH
Confidence 3467777665543322 11 234555663 588899988 799999999999876531 111 124689999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+..+..+.| +||.|+|++++++++...
T Consensus 341 ~~~L~~~~w------pgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 341 LERLKQLRW------PGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 999999999 999999999999998764
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=118.86 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=118.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC-CcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~vl~iDE~d~l~~~~ 322 (482)
..++|+||+|||||.++.++++.+...+. ..+.++..++. ....+.++... ..+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~l~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGR----SSAYLPLQAAA--------GRLRDALEALEGRSLVALDGLESIAGQR 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEeHHHhh--------hhHHHHHHHHhcCCEEEEeCcccccCCh
Confidence 45999999999999999999998865432 23333332222 12334444433 3699999999887533
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
. ...++-.++....+....+|++++..+ ...-..+|.+.+|| ...++|++|+.+++.+|++.+..+.
T Consensus 110 ~------~~~~lf~l~n~~~~~~~~vI~ts~~~p-~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~---- 178 (233)
T PRK08727 110 E------DEVALFDFHNRARAAGITLLYTARQMP-DGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR---- 178 (233)
T ss_pred H------HHHHHHHHHHHHHHcCCeEEEECCCCh-hhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc----
Confidence 2 112222333333222333444433222 22222378999997 6789999999999999999876653
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
+ ..++++++..+++.. .++.+.+.++++........ ....||...+++.++.
T Consensus 179 ---~----l~l~~e~~~~La~~~-------~rd~r~~l~~L~~l~~~~~~----------~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 179 ---G----LALDEAAIDWLLTHG-------ERELAGLVALLDRLDRESLA----------AKRRVTVPFLRRVLEE 230 (233)
T ss_pred ---C----CCCCHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHHhh
Confidence 2 367889999999875 46677777778876542211 1135888888877753
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=141.51 Aligned_cols=181 Identities=14% Similarity=0.157 Sum_probs=128.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccchh-------hHHHHHHhcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~v 309 (482)
...+++++|++||||+++|++++.. .....++|+.+++..+... .+|+... .....|..+.+|+
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~----s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYN----SRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHh----CCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 4568999999999999999999873 3345679999999876332 3443211 1123567788899
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCchhHHHHHhc---CccccCCC-c
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIAS---NEGFCRRV-T 372 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~~~~~~~~~---~~~l~~R~-~ 372 (482)
|||||++.+.+..| ..|+..++.+ .+.+|++++.+... +... .+.+..|+ .
T Consensus 241 l~ld~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~-~~~~g~~~~~l~~~l~~ 308 (457)
T PRK11361 241 LLLDEIGEMPLVLQ-----------AKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQA-MVKEGTFREDLFYRLNV 308 (457)
T ss_pred EEEechhhCCHHHH-----------HHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHH-HHHcCCchHHHHHHhcc
Confidence 99999999998555 7788877653 25777777655432 2111 23444555 4
Q ss_pred ceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 373 KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 373 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..|.+|++. .+++..++..++.+.... ++ .-...++++++..+..+.| +||.+++++++++|+...
T Consensus 309 ~~i~~ppLreR~~di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~w------pgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSE---NQ-RDIIDIDPMAMSLLTAWSW------PGNIRELSNVIERAVVMN 376 (457)
T ss_pred ceecCCChhhchhhHHHHHHHHHHHHHHH---cC-CCCCCcCHHHHHHHHcCCC------CCcHHHHHHHHHHHHHhC
Confidence 566777776 478888888888876431 11 1125789999999999999 999999999999998754
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-14 Score=133.52 Aligned_cols=100 Identities=27% Similarity=0.314 Sum_probs=80.1
Q ss_pred HHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccC
Q 011578 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 131 (482)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~ 131 (482)
|.=|+..|.+++|+-.+. .-.|+...|..|-|+||-|+..||++||++|++.|++||+.|.+||||||+|+ +
T Consensus 554 LLDaaLeGEldlVq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAA----S 625 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAA----S 625 (752)
T ss_pred HHhhhhcchHHHHHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhh----h
Confidence 345677888888888776 45567777888888888888888888888888888888888888888888888 8
Q ss_pred CChHHHHHHHhhCCCCccccCC-CCCChh
Q 011578 132 SEDYATVKTLLEYNADCSAKDN-EGKTPL 159 (482)
Q Consensus 132 ~~~~~~v~~Ll~~gad~~~~d~-~g~tpl 159 (482)
.++..+|+.|++.|+-+.+... ++.||.
T Consensus 626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~ 654 (752)
T KOG0515|consen 626 CNNVPMCKQLVESGAAVFASTLSDMETAA 654 (752)
T ss_pred cCchHHHHHHHhccceEEeeecccccchh
Confidence 8888888888888887765543 667776
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-14 Score=132.82 Aligned_cols=122 Identities=26% Similarity=0.187 Sum_probs=104.4
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
...|..|+..|.++.|+.++.+ -.++...++. |.|+||-|+-.||.+||++|++ .|+++|..|.+||||||+||
T Consensus 551 LaLLLDaaLeGEldlVq~~i~e-v~DpSqpNdE-GITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAA 624 (752)
T KOG0515|consen 551 LALLLDAALEGELDLVQRIIYE-VTDPSQPNDE-GITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAA 624 (752)
T ss_pred HHHHHhhhhcchHHHHHHHHHh-hcCCCCCCcc-chhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhh
Confidence 3457789999999999999854 5666777776 9999999999999999999999 68999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhh
Q 011578 94 KNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~ 143 (482)
.++++.+++.|++.|+-+-+.. .++.|+...+-.+ ..|..+|.+||..
T Consensus 625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM--EEGYDQCSQYLYG 673 (752)
T ss_pred hcCchHHHHHHHhccceEEeeecccccchhhhcchh--hhhHHHHHHHHHH
Confidence 9999999999999998876543 5677887655433 6788999999964
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=140.14 Aligned_cols=149 Identities=13% Similarity=0.182 Sum_probs=99.2
Q ss_pred HHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchhH
Q 011578 301 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 357 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~~ 357 (482)
.+.+|.+|+|||||++.|.+..| ..|++.|+.+ ++.+|++++++..
T Consensus 212 ~L~~AngGtL~Ldei~~L~~~~q-----------~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l 280 (608)
T TIGR00764 212 AIHRAHKGVLYIDEIKTMPLEVQ-----------QYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL 280 (608)
T ss_pred ceEECCCCEEEEEChHhCCHHHH-----------HHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH
Confidence 45677889999999999987444 6677766532 4577888776644
Q ss_pred HHHHhcCccccCCCc---ceeeCCC---CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHh---h
Q 011578 358 KRVIASNEGFCRRVT---KFFHFND---FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK---Q 428 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~---~~i~~~~---~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~ 428 (482)
.. .+|+|++||+ ..+.|+. .+.+.+..+++...+...+ .| ..+.++.++++++.+.+.+.. .
T Consensus 281 ~~---l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r----~G--~l~~~s~~Av~~Li~~~~R~ag~r~ 351 (608)
T TIGR00764 281 EG---MHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKK----DG--RIPHFTRDAVEEIVREAQRRAGRKD 351 (608)
T ss_pred hh---cCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHH----hC--CCCcCCHHHHHHHHHHHHHHHhccc
Confidence 43 3899999998 6666643 3466666665544333221 11 234789999999998766422 1
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.-..+.|.+.++++.|...+..+ ....|+.+|+.+|++...
T Consensus 352 ~lsl~~R~L~~llR~A~~iA~~~---------~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 352 HLTLRLRELGGLVRAAGDIAKSS---------GKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhc---------CCceecHHHHHHHHHHHH
Confidence 12356799999999985443111 235799999999987543
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-13 Score=135.19 Aligned_cols=242 Identities=15% Similarity=0.202 Sum_probs=145.7
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE---eec
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---VQR 283 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~---~~~ 283 (482)
.+.|++.+|..+.-.+-.=. ......+ .......++||+|+||||||++|+++++.+... .|+. .++
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~--~~~~~~~--~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------~~~~~~~~~~ 273 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV--HKNLPDG--MKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------VYTTGKGSSA 273 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC--ccccCCC--ccccccceEEEeCCCChhHHHHHHHHHHHcCcc------eEcCCCCCCc
Confidence 57899988777764321000 0000001 111234589999999999999999999976421 1111 111
Q ss_pred cccccc-----ccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------
Q 011578 284 TDLVGE-----FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------- 345 (482)
Q Consensus 284 ~~~~~~-----~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------------- 345 (482)
..+... ..|+. ..-...+..|.+|+++|||++.+.+..+ ..|++.|+.+.
T Consensus 274 ~~l~~~~~~~~~~g~~-~~~~G~l~~A~~Gil~iDEi~~l~~~~q-----------~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 274 VGLTAAVTRDPETREF-TLEGGALVLADNGVCCIDEFDKMDDSDR-----------TAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CCccccceEccCcceE-EecCccEEecCCCEEEEechhhCCHHHH-----------HHHHHHHhcCEEEEEeCCEEEEec
Confidence 112111 11110 0011234567889999999999987554 77888886533
Q ss_pred --EEEEEecCchhH--------HHHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHHhccccc------c----c---
Q 011578 346 --VVVIFAGYSEPM--------KRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQTED------S----L--- 401 (482)
Q Consensus 346 --~~vi~~~~~~~~--------~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l~~~~~~------~----~--- 401 (482)
..||+|+++..- ..-+...|++++|||.++.+ +.|+.+...+|++..+...... . .
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 466676654321 11123479999999886655 7899988899998866432100 0 0
Q ss_pred ------ccccc-ccCcccHHHHHHHHHHHhhHhhc---------cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcc
Q 011578 402 ------LYGFK-LHSSCSMDAIAALIEKETTEKQR---------REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 465 (482)
Q Consensus 402 ------~~~~~-~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i 465 (482)
.+--. +.+.+++++...+...+...+.. .+...|.+..+++.|...+..+.. ..|
T Consensus 422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r---------~~V 492 (509)
T smart00350 422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLS---------DVV 492 (509)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCC---------Ccc
Confidence 00001 44677888888887776643321 123457788888887777655543 479
Q ss_pred cHHHHHHHHHHHHh
Q 011578 466 TLEDLEAGLKLLLR 479 (482)
Q Consensus 466 ~~~d~~~al~~~~~ 479 (482)
+.+|+++|+.-+..
T Consensus 493 ~~~Dv~~ai~l~~~ 506 (509)
T smart00350 493 EEADVEEAIRLLRE 506 (509)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
|
|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-14 Score=100.13 Aligned_cols=50 Identities=48% Similarity=0.770 Sum_probs=26.0
Q ss_pred cccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeee
Q 011578 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 125 (482)
Q Consensus 76 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A 125 (482)
.+++.+|..|+||||+||..|+.+++++|++.|++++.+|.+|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 66777777777777777777777777777777777777777777777765
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=119.60 Aligned_cols=109 Identities=17% Similarity=0.376 Sum_probs=76.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-------hcCCcEEEEec
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDE 314 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~vl~iDE 314 (482)
+...++|.||+|||||.+|++||+.+.. -...+++.++.+.+... ++....+...+. ...++||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~---~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV---GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT----SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc---CCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHH
Confidence 3457999999999999999999998873 23448888998877651 111222223222 23447999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCch
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSE 355 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~ 355 (482)
||+++++.+.+.+.....+.+.||+.||++ +.++|+|++-.
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred HhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 999999744444556678999999999863 35777777533
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=139.41 Aligned_cols=182 Identities=17% Similarity=0.208 Sum_probs=127.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccch-------hhHHHHHHhcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTG-------PKTRRRIKEAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-------~~~~~~~~~a~~~v 309 (482)
....++++|++|||||++|+++++... ....+|+.+++..+... .+|+.. ......|+.+.+++
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~----r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASP----RASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcC----CCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 456799999999999999999998543 34568999998865332 333311 11123567788899
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCchhHHHHHhc--CccccCCC-cc
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TK 373 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~ 373 (482)
|||||||.|.+..| ..|+..++.+ ++.+|++++.+....+... .+.+..|+ ..
T Consensus 232 l~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~ 300 (444)
T PRK15115 232 LFLDEIGDMPAPLQ-----------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 (444)
T ss_pred EEEEccccCCHHHH-----------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee
Confidence 99999999998655 7788887653 3577777665533322110 13334455 44
Q ss_pred eeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 374 FFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 374 ~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.|.+|++.. +++..+++.++.+.... ++ +....++++++..+..+.| +||.|++++++++|+...
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~W------pgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAER---HK-PFVRAFSTDAMKRLMTASW------PGNVRQLVNVIEQCVALT 367 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHHH---hC-CCCCCcCHHHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 666666664 78888889988875421 11 1223689999999999999 999999999999988753
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-14 Score=143.87 Aligned_cols=176 Identities=21% Similarity=0.240 Sum_probs=109.9
Q ss_pred ccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC-CCCCChHHHHHHhCCcHHHHHHHHcCCCC----------
Q 011578 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN-PVMAQTPLHVSAGYNKAEIVKSLLEWPGN---------- 73 (482)
Q Consensus 5 ~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~---------- 73 (482)
+++.++-+++|||-+|...|..++|..+|.. |..+|.+. ...|.+||++|+.+||...++.|++.|.+
T Consensus 849 nkehrnvsDytPlsla~Sggy~~iI~~llS~-GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrn 927 (2131)
T KOG4369|consen 849 NKEHRNVSDYTPLSLARSGGYTKIIHALLSS-GSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRN 927 (2131)
T ss_pred cccccchhhcCchhhhcCcchHHHHHHHhhc-ccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccc
Confidence 4455555556666666666666666655533 33343332 22255566666666665555555552211
Q ss_pred --------------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccc--ccCCCcceeeehhhccC
Q 011578 74 --------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK--ANNGMTPLHLSVWYSIR 131 (482)
Q Consensus 74 --------------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~--d~~g~tpLh~A~~~~~~ 131 (482)
..+++..+.+.|.|||+-++..|.+++-.+||..|+|+|+. -....|+|-+++ .
T Consensus 928 Taltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a----~ 1003 (2131)
T KOG4369|consen 928 TALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPA----N 1003 (2131)
T ss_pred cceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeec----C
Confidence 23444444455566666666666666666666666665542 122345555555 6
Q ss_pred CChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 132 SEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 132 ~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+||...|..|+...+.+.++|++|.|+| +.++.++....+.+|..++++.+...
T Consensus 1004 kGh~kfv~~lln~~atv~v~NkkG~T~L-wla~~Gg~lss~~il~~~~ad~d~qd 1057 (2131)
T KOG4369|consen 1004 KGHTKFVPKLLNGDATVRVPNKKGCTVL-WLASAGGALSSCPILVSSVADADQQD 1057 (2131)
T ss_pred CCchhhhHHhhCCccceecccCCCCccc-chhccCCccccchHHhhcccChhhhh
Confidence 7778888888877777888999999999 99999999999999999988766554
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=95.23 Aligned_cols=54 Identities=50% Similarity=0.667 Sum_probs=37.3
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHH
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll 105 (482)
|+||||+||..|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~----~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE----HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH----TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 5678888888888888888887 46777777878888888888888888887775
|
... |
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-13 Score=138.41 Aligned_cols=125 Identities=27% Similarity=0.308 Sum_probs=112.6
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC----------------------CCCCChHHHHHHhCCcHHHHHHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN----------------------PVMAQTPLHVSAGYNKAEIVKSLL 68 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~----------------------~~~g~tpLh~A~~~g~~~~v~~Ll 68 (482)
--|+||||.|+.+.+.+.|+.||.. +++++.+- -+.|..||.+||-.++.+|+++|+
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 4589999999999999999999854 55554331 235789999999999999999999
Q ss_pred cCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCC--ccccccCCCcceeeehhhccCCChHHHHHHHhhC
Q 011578 69 EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 69 ~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ 144 (482)
+ .++|++.+|..|+|.||..+..-..++..+++++|++ ...+|+.|-|||-+|+ ..|..+|.+.+++.
T Consensus 261 ~----~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa----klGk~emf~~ile~ 330 (782)
T KOG3676|consen 261 A----HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA----KLGKKEMFQHILER 330 (782)
T ss_pred h----cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH----HhhhHHHHHHHHHh
Confidence 9 6899999999999999999999889999999999999 8899999999999999 99999999999987
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-13 Score=117.73 Aligned_cols=104 Identities=24% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccch-------hhHHHHHHhcCCc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTG-------PKTRRRIKEAEGG 308 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-------~~~~~~~~~a~~~ 308 (482)
..+.+|+++|++||||+++|++|++ .+.....||+.++++.+..+ .+|... ......|++|.+|
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~----~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G 95 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN----NSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG 95 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH----CSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH----hhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce
Confidence 4668999999999999999999998 55556789999999876433 455421 1234789999999
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCchhHHH
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKR 359 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~~~~~ 359 (482)
+||||||+.|.+..| ..|++.|+.+ ++.+|++|+.+....
T Consensus 96 tL~Ld~I~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~ 148 (168)
T PF00158_consen 96 TLFLDEIEDLPPELQ-----------AKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEEL 148 (168)
T ss_dssp EEEEETGGGS-HHHH-----------HHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHH
T ss_pred EEeecchhhhHHHHH-----------HHHHHHHhhchhccccccccccccceEEeecCcCHHHH
Confidence 999999999998555 8888888742 468888877665443
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=136.87 Aligned_cols=251 Identities=14% Similarity=0.111 Sum_probs=148.5
Q ss_pred hhhchHHHHHHHHHHH-HHHhHHHHHHHc--C--CCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 207 NIVGLHELKIQLRKWA-KGMLLDERRKAL--G--LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~-~~~~~~~~~~~~--~--~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.|.|++.+|+.|.-.+ ............ + .........+|||.|+||||||.+|+++++......+....++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 5889999988775332 111000000000 0 0011234568999999999999999999996543323333455544
Q ss_pred eccccccccccc-chh-h-HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--------------
Q 011578 282 QRTDLVGEFVGH-TGP-K-TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------- 344 (482)
Q Consensus 282 ~~~~~~~~~~g~-~~~-~-~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------- 344 (482)
....... +.+. ++. . -...+..|.+|+++|||++++.+..| ..|++.|+.+
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q-----------~aLlEaMEqqtIsI~KaGi~~tL~ 598 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESR-----------LSLYEVMEQQTVTIAKAGIVATLK 598 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEcCCCeEEecchhhCCHHHH-----------HHHHHHHhCCEEEEecCCcceecC
Confidence 3333221 1110 111 1 12345678889999999999987555 7788888653
Q ss_pred -cEEEEEecCchh--------HHHHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhcccc----------------
Q 011578 345 -KVVVIFAGYSEP--------MKRVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTE---------------- 398 (482)
Q Consensus 345 -~~~vi~~~~~~~--------~~~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~---------------- 398 (482)
+..||+|+++.. +..-+...|++++|||.++. ++.|+.+.=..|.+..++....
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~ 678 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRS 678 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhcc
Confidence 346777766531 11223346999999988765 5777765545554444421100
Q ss_pred -------------------------cccccc-ccccCcccHHHHHHHHHHHhhHhhc-----------------------
Q 011578 399 -------------------------DSLLYG-FKLHSSCSMDAIAALIEKETTEKQR----------------------- 429 (482)
Q Consensus 399 -------------------------~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~----------------------- 429 (482)
....|. -.+.|.+++++-..+.+.|..-+..
T Consensus 679 ~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (915)
T PTZ00111 679 NTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYY 758 (915)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 000011 1346778888888887776643321
Q ss_pred -------cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 430 -------REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 430 -------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.+...|.|..++..|...+..|+. ..|+.+|+++|+.-+.
T Consensus 759 ~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs---------~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 759 QSSGTRMIYVSSRMISSIIRISVSLARMRLS---------TVVTPADALQAVQIVK 805 (915)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHhhhcCc---------CcccHHHHHHHHHHHH
Confidence 123468899999888877766665 4688999998887664
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-13 Score=120.69 Aligned_cols=121 Identities=24% Similarity=0.244 Sum_probs=108.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc-CcCCCChHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYGETPL 89 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~tpL 89 (482)
+.-..||..++.+|+.+....||.. ...+|..|+. |+|||..|++.|+.++|++|+++ |+|+|. ++..++|||
T Consensus 10 d~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~s-GMs~LahAaykGnl~~v~lll~~----gaDvN~~qhg~~YTpL 83 (396)
T KOG1710|consen 10 DAPKSPLLEAIDKNDTEAALALLST-VRQVNQRDPS-GMSVLAHAAYKGNLTLVELLLEL----GADVNDKQHGTLYTPL 83 (396)
T ss_pred cchhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCC-cccHHHHHHhcCcHHHHHHHHHh----CCCcCcccccccccHH
Confidence 4567899999999999999999954 6668999987 99999999999999999999994 667775 567889999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHH
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~L 141 (482)
|+|+-+|+.++..+|++.|+.+...|.-|+|+-.+|+ .-|+.++|..+
T Consensus 84 mFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAA----FVG~H~CV~iI 131 (396)
T KOG1710|consen 84 MFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAA----FVGHHECVAII 131 (396)
T ss_pred HHHHHcCCchHHHHHHhccCccccccchhhhHHHHHH----HhcchHHHHHH
Confidence 9999999999999999999999999999999999999 67788887654
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=118.25 Aligned_cols=167 Identities=12% Similarity=0.073 Sum_probs=110.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
..++||||||||||.+++++++.... .++. .... ..+.+ ....+|+|||||.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-----------~~~~~--~~~d~lliDdi~~~~~--- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-----------NEEIL--EKYNAFIIEDIENWQE--- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-----------chhHH--hcCCEEEEeccccchH---
Confidence 57999999999999999998875431 1111 0000 01111 1347899999995411
Q ss_pred CCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccccccc
Q 011578 324 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDSL 401 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~~ 401 (482)
..+...+-...+.|+.++++++++++.. .. |++++|+ ..++.+.+|+.+++..++++.+...
T Consensus 100 -------~~lf~l~N~~~e~g~~ilits~~~p~~l---~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~----- 163 (214)
T PRK06620 100 -------PALLHIFNIINEKQKYLLLTSSDKSRNF---TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS----- 163 (214)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEcCCCcccc---ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-----
Confidence 1222333333366887777777666532 23 7899999 3379999999999999999887752
Q ss_pred cccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 402 LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
+ ..++++++..++... .++.|.+.++++....... ...+.||...+++++
T Consensus 164 --~----l~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~~~~----------~~~~~it~~~~~~~l 213 (214)
T PRK06620 164 --S----VTISRQIIDFLLVNL-------PREYSKIIEILENINYFAL----------ISKRKITISLVKEVL 213 (214)
T ss_pred --C----CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HcCCCCCHHHHHHHh
Confidence 2 356889999999876 5788888888887533210 112357777777665
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-13 Score=141.06 Aligned_cols=106 Identities=29% Similarity=0.381 Sum_probs=95.6
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
+.|+.|+..|+.+.++.||. .+.++|..+.. |+||||+||..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~d~~-G~TpLh~Aa~~g~~eiv~~LL~----~Gadvn~~d~~G~TpLh~A~~ 157 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT-GGADPNCRDYD-GRTPLHIACANGHVQVVRVLLE----FGADPTLLDKDGKTPLELAEE 157 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence 35889999999999998885 57788988876 9999999999999999999999 588899999999999999999
Q ss_pred cCCHHHHHHHHhC-------CCCccccccCCCcceeeeh
Q 011578 95 NGCNEAAKLLLAH-------GAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 95 ~g~~~~v~~Ll~~-------ga~~~~~d~~g~tpLh~A~ 126 (482)
.|+.+++++|+++ |++++..+..|.+|+..+.
T Consensus 158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 9999999999998 8888888888888876544
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-13 Score=132.63 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=102.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc-------------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV------------- 270 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~------------- 270 (482)
.+.++.|+..+++.+. +......+++|.||||+|||++++.++..+...
T Consensus 189 d~~~v~Gq~~~~~al~------------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE------------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred CeEEEECcHHHHhhhh------------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 5667788877666543 223456789999999999999999998755211
Q ss_pred --CC------CCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 271 --GI------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 271 --~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
+. ....||...+.+.-....+|.....-...+..|.++||||||++.+.+ .++..|++.|+
T Consensus 251 ~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~-----------~~~~~L~~~LE 319 (506)
T PRK09862 251 LVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER-----------RTLDALREPIE 319 (506)
T ss_pred hhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCH-----------HHHHHHHHHHH
Confidence 10 122344444443333345664433344678999999999999988776 55688888887
Q ss_pred CCc---------------EEEEEecCchhHHH----------------HHhcCccccCCCcceeeCCCCCHH
Q 011578 343 GGK---------------VVVIFAGYSEPMKR----------------VIASNEGFCRRVTKFFHFNDFNSE 383 (482)
Q Consensus 343 ~~~---------------~~vi~~~~~~~~~~----------------~~~~~~~l~~R~~~~i~~~~~~~~ 383 (482)
++. +.+|+|+++.+--. .-...+++++|||..+.++.++.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 643 47777776654100 112367899999999999998755
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=130.72 Aligned_cols=175 Identities=16% Similarity=0.193 Sum_probs=116.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~~ 321 (482)
..++|||++|+|||.|+.++++.+.... ....++.++..++..+++........+.|.+ ....+|+|||++.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~--~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY--PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC
Confidence 3499999999999999999999886421 1235677777776655543321112222332 12489999999998754
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc-hhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccc
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE 398 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~-~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~ 398 (482)
.. ....+++.|-...+.++-+||.+... ..+.. .++.|.+|| ..++.+..|+.+.|..||+..+....
T Consensus 393 e~-----tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~---l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~- 463 (617)
T PRK14086 393 ES-----TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVT---LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ- 463 (617)
T ss_pred HH-----HHHHHHHHHHHHHhcCCCEEEecCCChHhhhh---ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-
Confidence 32 11233333333344455555555332 22322 378899999 67889999999999999999877542
Q ss_pred ccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 399 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++.+.+..++.+. ..|.|.|..++.+...
T Consensus 464 ----------l~l~~eVi~yLa~r~-------~rnvR~LegaL~rL~a 494 (617)
T PRK14086 464 ----------LNAPPEVLEFIASRI-------SRNIRELEGALIRVTA 494 (617)
T ss_pred ----------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHH
Confidence 456889999999876 4677888888776654
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=141.08 Aligned_cols=200 Identities=20% Similarity=0.239 Sum_probs=159.9
Q ss_pred cccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc-CcCC
Q 011578 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMY 84 (482)
Q Consensus 6 ~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~ 84 (482)
|.....+-.|+|-.||..|+-+.|..++ ..|.++..+|.. |.+||.+|+..||..+|+.|+. ..++++. .|+.
T Consensus 750 d~~Te~n~~t~LT~acaggh~e~vellv-~rganiehrdkk-gf~plImaatagh~tvV~~llk----~ha~veaQsdrt 823 (2131)
T KOG4369|consen 750 DPLTEPNIKTNLTSACAGGHREEVELLV-VRGANIEHRDKK-GFVPLIMAATAGHITVVQDLLK----AHADVEAQSDRT 823 (2131)
T ss_pred ccccCccccccccccccCccHHHHHHHH-Hhcccccccccc-cchhhhhhcccCchHHHHHHHh----hhhhhhhhcccc
Confidence 3445566789999999999999999877 557788888887 9999999999999999999998 4677765 4688
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC--CCCCChhhhh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--NEGKTPLDHL 162 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d--~~g~tpl~~~ 162 (482)
+.|+|.+||..|..++|++||..|++-..++....|||-+|. ..|+.+++..|+.+|+.+|.+. +.|-+|| .+
T Consensus 824 kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~----Sggy~~iI~~llS~GseInSrtgSklgisPL-ml 898 (2131)
T KOG4369|consen 824 KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLAR----SGGYTKIIHALLSSGSEINSRTGSKLGISPL-ML 898 (2131)
T ss_pred cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhc----CcchHHHHHHHhhcccccccccccccCcchh-hh
Confidence 999999999999999999999999999999999999999999 9999999999999999988764 4788999 56
Q ss_pred hcCCCChHHHHHHHhhhHHHHHHhhHhhhhhhhhhHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 011578 163 SNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGM 225 (482)
Q Consensus 163 a~~~~~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~G~~~~k~~l~~~~~~~ 225 (482)
+.-+++......|++.|.+.+.+-.-..... -.+.-.-|..++...|..+...+
T Consensus 899 atmngh~~at~~ll~~gsdiNaqIeTNrnTa---------ltla~fqgr~evv~lLLa~~anv 952 (2131)
T KOG4369|consen 899 ATMNGHQAATLSLLQPGSDINAQIETNRNTA---------LTLALFQGRPEVVFLLLAAQANV 952 (2131)
T ss_pred hhhccccHHHHHHhcccchhccccccccccc---------eeeccccCcchHHHHHHHHhhhh
Confidence 6667777788888888887766542211111 12233456676666666554333
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=116.34 Aligned_cols=178 Identities=12% Similarity=0.079 Sum_probs=116.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
...++|+||+|+|||+|++++++... ...++...+.. +.+......+|+||+++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~---------~~~i~~~~~~~-----------~~~~~~~~~~l~iDDi~~~~~~- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD---------ALLIHPNEIGS-----------DAANAAAEGPVLIEDIDAGGFD- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC---------CEEecHHHcch-----------HHHHhhhcCeEEEECCCCCCCC-
Confidence 34599999999999999999997532 12333222211 2223333468999999977321
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+ ..+...+-...+.++.+|+++++..+.... ..|.+++|| ...+++.+|+.+++.+|+++.++...
T Consensus 103 ~-------~~lf~l~n~~~~~g~~ilits~~~p~~~~~--~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~--- 170 (226)
T PRK09087 103 E-------TGLFHLINSVRQAGTSLLMTSRLWPSSWNV--KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ--- 170 (226)
T ss_pred H-------HHHHHHHHHHHhCCCeEEEECCCChHHhcc--ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC---
Confidence 1 133343434445577777777665554322 268899999 58999999999999999999987632
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..++++.+..+++... ++.+.+..++.+..... ......||..-++++++.+.
T Consensus 171 --------~~l~~ev~~~La~~~~-------r~~~~l~~~l~~L~~~~----------~~~~~~it~~~~~~~l~~~~ 223 (226)
T PRK09087 171 --------LYVDPHVVYYLVSRME-------RSLFAAQTIVDRLDRLA----------LERKSRITRALAAEVLNEMG 223 (226)
T ss_pred --------CCCCHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHHhhc
Confidence 4568899999998763 44555555544443221 01224688888888887653
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=128.10 Aligned_cols=180 Identities=11% Similarity=0.095 Sum_probs=118.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch---hhHHHHHHhc-CCcEEEEeccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG---PKTRRRIKEA-EGGILFVDEAYRL 318 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~a-~~~vl~iDE~d~l 318 (482)
..+++||||+|+|||.|++++++.+.... ....++.+++.++...+...-. ..+.+..+.. ...+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence 35699999999999999999999886421 1235667777776655443211 1222222222 3369999999988
Q ss_pred ccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 319 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
..+.. ........+-..++.++.+|+.+..+... +-..++.+.+|| ...+.+.+|+.+++..|++..++..
T Consensus 219 ~~k~~-----~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 219 SYKEK-----TNEIFFTIFNNFIENDKQLFFSSDKSPEL--LNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred cCCHH-----HHHHHHHHHHHHHHcCCcEEEECCCCHHH--HhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 64321 11123333333345566555554332222 212378899999 6788999999999999999998753
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 397 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
|+ ...++++++..++... .++.|.+.+++.++...
T Consensus 292 -------gl--~~~l~~evl~~Ia~~~-------~gd~R~L~gaL~~l~~~ 326 (450)
T PRK14087 292 -------NI--KQEVTEEAINFISNYY-------SDDVRKIKGSVSRLNFW 326 (450)
T ss_pred -------CC--CCCCCHHHHHHHHHcc-------CCCHHHHHHHHHHHHHH
Confidence 22 1257889999999876 68899999999887643
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-12 Score=115.92 Aligned_cols=168 Identities=10% Similarity=0.155 Sum_probs=112.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
...++|+||+|||||.|++++++++...+ ..++.++..++.... ..+.+.+. ..-+|+||+++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----~~v~y~~~~~~~~~~-----~~~~~~~~--~~d~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG----EPAVYLPLAELLDRG-----PELLDNLE--QYELVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEeeHHHHHhhh-----HHHHHhhh--hCCEEEEechhhhcCCh
Confidence 35789999999999999999999876432 245566665554321 11222222 22589999999886532
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+ ......+.+-...+.++.++++++++.+... ...|.+++|| ...+.+.+|+.+++.++++......
T Consensus 114 ~-----~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~--~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~---- 182 (234)
T PRK05642 114 D-----WEEALFHLFNRLRDSGRRLLLAASKSPRELP--IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR---- 182 (234)
T ss_pred H-----HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC--ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----
Confidence 2 1112333333334557777777765444321 2369999999 5788899999999999999665442
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+ ..++++++..+++.. .+++|.+.++++....
T Consensus 183 ---~----~~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~ 214 (234)
T PRK05642 183 ---G----LHLTDEVGHFILTRG-------TRSMSALFDLLERLDQ 214 (234)
T ss_pred ---C----CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHH
Confidence 2 356789999999876 5778888888887643
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=116.50 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=74.9
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchh-------HHHHHhcCccccCCCcceeeCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-------MKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~-------~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
|||||||++.|-- +...-|-+.|++ -..++|+||+.-- +....-.+..|++|+ .+|...+
T Consensus 293 GVLFIDEvHmLDI-----------E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~p 360 (450)
T COG1224 293 GVLFIDEVHMLDI-----------ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTRP 360 (450)
T ss_pred ceEEEechhhhhH-----------HHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecCC
Confidence 8999999998865 445667777776 3456666653211 111111135678888 8999999
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++.+++++|++...+++. ..+++++++.++.-.. ...-|..-+++.-|...+
T Consensus 361 y~~~EireIi~iRa~ee~-----------i~l~~~Ale~L~~ig~------etSLRYa~qLL~pa~iiA 412 (450)
T COG1224 361 YSREEIREIIRIRAKEED-----------IELSDDALEYLTDIGE------ETSLRYAVQLLTPASIIA 412 (450)
T ss_pred CCHHHHHHHHHHhhhhhc-----------cccCHHHHHHHHhhch------hhhHHHHHHhccHHHHHH
Confidence 999999999999888753 5678899999988544 222344455555444443
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-13 Score=95.26 Aligned_cols=54 Identities=50% Similarity=0.732 Sum_probs=46.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll 142 (482)
|.||||+||..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~----~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAA----KNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHH----HTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HccCHHHHHHHC
Confidence 689999999999999999999999999999999999999999 889999999986
|
... |
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-13 Score=95.05 Aligned_cols=56 Identities=38% Similarity=0.643 Sum_probs=33.2
Q ss_pred HHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 32 ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
||+.++.++|..+.. |.||||+||.+|+.++|++|++ .+++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~-G~T~LH~A~~~g~~~~v~~Ll~----~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKY-GNTPLHWAARYGHSEVVRLLLQ----NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TT-S--HHHHHHHHT-HHHHHHHHH----CT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCC-CCcHHHHHHHcCcHHHHHHHHH----CcCCCCCCcCCCCCHHHhC
Confidence 455566888999987 9999999999999999999997 7899999999999999997
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-11 Score=107.95 Aligned_cols=195 Identities=17% Similarity=0.241 Sum_probs=124.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.+++++|.+..|+.|.+-...+ +...+..++||+|+.|||||+++|++..++...|. .++++.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~F------------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----RlIev~ 87 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQF------------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----RLIEVS 87 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHH------------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc----eEEEEC
Confidence 45788999999999998865554 23347789999999999999999999999987664 678887
Q ss_pred cccccccccccchhhHHHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~~~ 355 (482)
..++.. -..+-+.+... ..=|||+|+.. +.. .+ .--..|...||+ .++++.+|++..
T Consensus 88 k~~L~~------l~~l~~~l~~~~~kFIlf~DDLs-Fe~------~d---~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 88 KEDLGD------LPELLDLLRDRPYKFILFCDDLS-FEE------GD---TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred HHHhcc------HHHHHHHHhcCCCCEEEEecCCC-CCC------Cc---HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 666532 12233333332 34699999753 111 11 112556666665 345555554322
Q ss_pred hH-HHH-Hh----------------cCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 356 PM-KRV-IA----------------SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 356 ~~-~~~-~~----------------~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
-+ .+. .+ ---+|.+||...+.|.+|+.++-.+|++.++++. |+ .++.+.+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~-------g~----~~~~e~l~ 220 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY-------GL----ELDEEELR 220 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc-------CC----CCCHHHHH
Confidence 11 111 01 0134677999999999999999999999999764 33 33445555
Q ss_pred HHHHHHhhHhhccccCcchhHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLV 442 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~ 442 (482)
..+-.+. .....-+||..++-+.
T Consensus 221 ~~Al~wa--~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 221 QEALQWA--LRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHH--HHcCCCCHHHHHHHHH
Confidence 5554432 1222345666555543
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-12 Score=120.89 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=101.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD----- 276 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~----- 276 (482)
...+++++|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|+.+.........
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~---------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE---------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc---------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 45678899999999999886321 1234459999999999999999999988652100000
Q ss_pred -C-----------------eEEeecc-cccc-cc-cccchhhHHHH---HHhc----CCcEEEEecccccccCCCCCCCh
Q 011578 277 -R-----------------VTEVQRT-DLVG-EF-VGHTGPKTRRR---IKEA----EGGILFVDEAYRLIPMQKADDKD 328 (482)
Q Consensus 277 -~-----------------~~~~~~~-~~~~-~~-~g~~~~~~~~~---~~~a----~~~vl~iDE~d~l~~~~~~~~~~ 328 (482)
+ ++.+... +... +. -+-+...++++ |... ...|++|||+|.+..
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~-------- 155 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR-------- 155 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------
Confidence 0 1111100 0000 00 00011223332 3321 237999999999987
Q ss_pred hHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 329 YGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 329 ~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
.+.|.||..+++ +.+++++++.+..+ .|.+++|+ ..++|++|+.++...+++..
T Consensus 156 ---~aanaLLk~LEEpp~~~~fiLit~~~~~l------lptIrSRc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 ---NAANAILKTLEEPPARALFILISHSSGRL------LPTIRSRC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ---HHHHHHHHHHhcCCCCceEEEEECChhhc------cHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence 444889999987 33445555344322 68899999 89999999999999999873
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-13 Score=117.33 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=106.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccc-cccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpLh~A~ 126 (482)
-..||.-+...|..+-...||. ..-++|.+|..|.|||..|+..|+.++|++|++.|+|+|. ++..+.||||+|+
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs----~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA 87 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLS----TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA 87 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHH----HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence 4589999999999999999997 3455899999999999999999999999999999999996 5667899999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
..|+.+++++|++.|+.+...|.-|+|+-.+||.-+++ +++.++..+
T Consensus 88 ----LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H-~CV~iINN~ 134 (396)
T KOG1710|consen 88 ----LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHH-ECVAIINNH 134 (396)
T ss_pred ----HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcch-HHHHHHhcc
Confidence 88999999999999999999999999999777766555 445454433
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=127.33 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=94.8
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc-c
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-D 285 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~-~ 285 (482)
.++|.+++++.+... .....++||.||||||||++|++|+..+...+ +|....+. .
T Consensus 21 ~i~gre~vI~lll~a------------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~-----~F~~~~~~ft 77 (498)
T PRK13531 21 GLYERSHAIRLCLLA------------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRFS 77 (498)
T ss_pred hccCcHHHHHHHHHH------------------HccCCCEEEECCCChhHHHHHHHHHHHhcccC-----cceeeeeeec
Confidence 478999888877754 23568999999999999999999999775322 23222221 1
Q ss_pred ccccccccc-hhhH--HHHHHhc------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-----------
Q 011578 286 LVGEFVGHT-GPKT--RRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------- 345 (482)
Q Consensus 286 ~~~~~~g~~-~~~~--~~~~~~a------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------- 345 (482)
.....+|.. .... ...|... ...|||+|||.++.++.| +.|++.|+++.
T Consensus 78 tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~Q-----------saLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 78 TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAIL-----------NTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHH-----------HHHHHHHHhCeEecCCeEEeCC
Confidence 123444432 1111 1122211 124899999998888544 99999996533
Q ss_pred -EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHHHHHHHHHH
Q 011578 346 -VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILHIK 392 (482)
Q Consensus 346 -~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~ 392 (482)
.++++||+ +...--...+++.+||-..+.+|+|+ .++-.+|+...
T Consensus 147 ~rfiv~ATN--~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASN--ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECC--CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 35555543 22110011357899998899999997 46667788764
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=132.29 Aligned_cols=183 Identities=20% Similarity=0.238 Sum_probs=129.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccchh-------hHHHHHHhcCCc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG 308 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~ 308 (482)
.....++++|++||||+++|++++... .....+|+.++++.+... .+|+... .....|..+.+|
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s----~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASS----ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcC----CCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 345679999999999999999999743 344569999999865432 3343211 112346778899
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEecCchhHHHHHh--cCccccCCC-c
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-T 372 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~ 372 (482)
+||||||+.|.+..| ..|+..++.+. +.+|++|+.+....+.. -.+.|..|+ .
T Consensus 236 tl~ldei~~l~~~~q-----------~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 236 TLFLDEIGDISPMMQ-----------VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 (441)
T ss_pred EEEEeccccCCHHHH-----------HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc
Confidence 999999999998555 77888887643 46788877766543311 112233344 4
Q ss_pred ceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 373 KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 373 ~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..|.+|++.. +++..+++.++.+.... ++ +....++++++..+..+.| +||.|++++++++++...
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~w------pgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAER---NR-KAVKGFTPQAMDLLIHYDW------PGNIRELENAVERAVVLL 372 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHH---hC-CCCCCcCHHHHHHHHhCCC------CCHHHHHHHHHHHHHHhC
Confidence 5666777764 68888999998875431 11 1224589999999999999 999999999999988753
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=121.44 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=92.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--ccccchhhH----------HHHHHh--cCCc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVGHTGPKT----------RRRIKE--AEGG 308 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~----------~~~~~~--a~~~ 308 (482)
..+++|.||||||||++|+.+|+.++. +++.++.+..... ++|.....+ ...+.. ..++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~-------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNW-------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCC-------CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence 468999999999999999999999987 7777776543332 555422111 112222 2467
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhh-----h-cC-------CcEEEEEecCchh-------HHHHHhcCcccc
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSV-----M-DG-------GKVVVIFAGYSEP-------MKRVIASNEGFC 368 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~-----l-~~-------~~~~vi~~~~~~~-------~~~~~~~~~~l~ 368 (482)
+||+||+|...++.+ .+++.+|+. + +. ..+.+|+|.++.. +.-....+++++
T Consensus 137 illlDEin~a~p~~~--------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 137 ALCFDEYDAGRPDVM--------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred EEEechhhccCHHHH--------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 899999999977444 444445542 1 11 2356777766543 222333478999
Q ss_pred CCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 369 RRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 369 ~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
+||-.++.++.|+.++-.+|+....
T Consensus 209 DRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 209 DRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred hheeeEeeCCCCCHHHHHHHHHhhc
Confidence 9997788999999999999997654
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=117.63 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=103.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC----------C
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------L 273 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~----------~ 273 (482)
.|++++|++.+++.+.+.+.. ..-++.+||+||+|+||+++|+++|+.+..... .
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~---------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~ 66 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ---------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE 66 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence 478999999999999987421 123578999999999999999999998864321 0
Q ss_pred CC-CCeEEeeccccc-cc--------ccc-------c-chhhHHHHHHh-------cCCcEEEEecccccccCCCCCCCh
Q 011578 274 PT-DRVTEVQRTDLV-GE--------FVG-------H-TGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKD 328 (482)
Q Consensus 274 ~~-~~~~~~~~~~~~-~~--------~~g-------~-~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~ 328 (482)
.+ ..+..+.+.... ++ ..| . .-..++++.+. +...|++||++|.+...
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~------- 139 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA------- 139 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-------
Confidence 01 111222221000 10 011 0 01134444322 23489999999999874
Q ss_pred hHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 329 YGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 329 ~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
+.|.||..|++ ..++++.++++ +.+ .|++++|+ ..++|++++.++..+++....
T Consensus 140 ----aaNaLLK~LEEPp~~~fILi~~~~---~~L---l~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 140 ----AANALLKTLEEPGNGTLILIAPSP---ESL---LPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ----HHHHHHHHHhCCCCCeEEEEECCh---HhC---cHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 44999999986 33444444333 333 78899999 999999999999999998754
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=128.47 Aligned_cols=178 Identities=18% Similarity=0.352 Sum_probs=128.4
Q ss_pred HHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 198 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 198 ~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
+..+.+.+. .++||+++...|-+.+... ..+..-. .+...++|.||.|+|||-+|++||..++. ...
T Consensus 553 l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s-------r~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg----se~ 620 (898)
T KOG1051|consen 553 LKKLEERLHERVIGQDEAVAAIAAAIRRS-------RAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG----SEE 620 (898)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhh-------hcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC----Ccc
Confidence 334444444 4899999988888764333 2233222 46778999999999999999999997742 344
Q ss_pred CeEEeeccc------cc---ccccccchh-hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-
Q 011578 277 RVTEVQRTD------LV---GEFVGHTGP-KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 345 (482)
Q Consensus 277 ~~~~~~~~~------~~---~~~~g~~~~-~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~- 345 (482)
.++.++.++ +. ..|+|.++. .+.+.++..+.+||||||||+.++ .+++.|++.+|.|+
T Consensus 621 ~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~Grl 689 (898)
T KOG1051|consen 621 NFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRL 689 (898)
T ss_pred ceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCcc
Confidence 678887773 32 348887654 788889888899999999999998 67799999998743
Q ss_pred ------------EEEEEecCchhH-----------------------------HHHHh------cCccccCCCcceeeCC
Q 011578 346 ------------VVVIFAGYSEPM-----------------------------KRVIA------SNEGFCRRVTKFFHFN 378 (482)
Q Consensus 346 ------------~~vi~~~~~~~~-----------------------------~~~~~------~~~~l~~R~~~~i~~~ 378 (482)
.+||+|.+...- ..... -.|.+.+|.+..+.|.
T Consensus 690 tDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~ 769 (898)
T KOG1051|consen 690 TDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNL 769 (898)
T ss_pred ccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeec
Confidence 477777531000 00111 1266777899999999
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011578 379 DFNSEELAKILHIKMNNQTE 398 (482)
Q Consensus 379 ~~~~~~~~~il~~~l~~~~~ 398 (482)
+.+.++..+|....+.+..+
T Consensus 770 ~l~~~~~~~i~~~~~~e~~~ 789 (898)
T KOG1051|consen 770 PLDRDELIEIVNKQLTEIEK 789 (898)
T ss_pred ccchhhHhhhhhhHHHHHHH
Confidence 99999999999888876643
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=119.65 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=102.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD----- 276 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~----- 276 (482)
...+++|+|++.+++.+.+.+.. ..-+..+||+||+|+||+++|.++|+.+.........
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~---------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS---------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 34678899999999999876321 1234459999999999999999999999643211110
Q ss_pred ----------------------CeEEeecc--cccc---cccccchhhHHHHHHh-------cCCcEEEEecccccccCC
Q 011578 277 ----------------------RVTEVQRT--DLVG---EFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 277 ----------------------~~~~~~~~--~~~~---~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~ 322 (482)
.+..+.+. +-.+ ..+ ....++++.+. ....|++|||+|.+..
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I--~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-- 155 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVI--TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-- 155 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccc--cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH--
Confidence 11112110 0000 000 11234444332 2337999999999987
Q ss_pred CCCCChhHHHHHHHHHhhhcC--Cc-EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 323 KADDKDYGIEALEEIMSVMDG--GK-VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~--~~-~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
...|.|+..+++ +. ++++++..+... .|.+++|+ ..+.|++|+.++..+++....
T Consensus 156 ---------~aanaLLK~LEepp~~~~~IL~t~~~~~l------lpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 ---------NAANALLKVLEEPPARSLFLLVSHAPARL------LPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ---------HHHHHHHHHHhcCCCCeEEEEEECCchhc------hHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 455899999987 33 444444344332 57889998 899999999999999998753
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=126.92 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=123.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++...+.++.++.... .+..+..-++|+||||||||++++++|+.++.....-..+.-...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~-----------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQV-----------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcc-----------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 567889999999888888754332 111222348999999999999999999988642110000000000
Q ss_pred ccc------ccccccc---cchhhHHHHHHhc-------------CCcEEEEecccccccCCCCCCChhHHHHHHHHHh-
Q 011578 283 RTD------LVGEFVG---HTGPKTRRRIKEA-------------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS- 339 (482)
Q Consensus 283 ~~~------~~~~~~g---~~~~~~~~~~~~a-------------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~- 339 (482)
.+. .....++ .......+.+..+ ...||||||++.+..... .++..++.
T Consensus 150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~ 221 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRW 221 (637)
T ss_pred cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHH
Confidence 000 0000011 1122233333222 236999999998764221 34455555
Q ss_pred -hhcCCcEEEEEecCchhH------HHHHh----cCccccC--CCcceeeCCCCCHHHHHHHHHHHHhcccccccccccc
Q 011578 340 -VMDGGKVVVIFAGYSEPM------KRVIA----SNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 406 (482)
Q Consensus 340 -~l~~~~~~vi~~~~~~~~------~~~~~----~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 406 (482)
..+.+.+.+|++++.++. ...+. ..|++++ |. .+|.|+++++.++.+.|+..+..+... ..
T Consensus 222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~-----~~ 295 (637)
T TIGR00602 222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK-----NG 295 (637)
T ss_pred HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc-----cc
Confidence 345666666666553322 11111 1367765 44 579999999999999999998875321 00
Q ss_pred ccCcc-cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 407 LHSSC-SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 407 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
....+ +.+++..++... .|+.|..-+.++-++.
T Consensus 296 ~~~~~p~~~~l~~I~~~s-------~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGC-------SGDIRSAINSLQFSSS 329 (637)
T ss_pred cccccCCHHHHHHHHHhC-------CChHHHHHHHHHHHHh
Confidence 01112 467888887744 5777777788887654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-11 Score=112.95 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=124.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE--eecccc---cccccccc-----h----hhHHHHH----Hh
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDL---VGEFVGHT-----G----PKTRRRI----KE 304 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~--~~~~~~---~~~~~g~~-----~----~~~~~~~----~~ 304 (482)
...++++||+|+|||++++.+++.+...... ....+. .+..++ +....|.. . ..+.+.+ ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~-~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVV-AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE-EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3458899999999999999999877521110 000000 111111 11112211 1 1112212 12
Q ss_pred cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc-C-CcEEEEEecCchhHHHHHhc--CccccCCCcceeeCCCC
Q 011578 305 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-G-GKVVVIFAGYSEPMKRVIAS--NEGFCRRVTKFFHFNDF 380 (482)
Q Consensus 305 a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~-~-~~~~vi~~~~~~~~~~~~~~--~~~l~~R~~~~i~~~~~ 380 (482)
.+..||+|||++.+.+.. .+.+..|..... . ..+.|++++.+.... .+.. ...+.+|+...++++++
T Consensus 122 ~~~~vliiDe~~~l~~~~--------~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~-~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPEL--------LEELRMLSNFQTDNAKLLQIFLVGQPEFRE-TLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred CCCeEEEEECcccCCHHH--------HHHHHHHhCcccCCCCeEEEEEcCCHHHHH-HHcCchhHHHHhheeeeeeCCCC
Confidence 344799999999886421 233333433322 2 234456666555333 2221 23467788889999999
Q ss_pred CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChh
Q 011578 381 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD 460 (482)
Q Consensus 381 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~ 460 (482)
+.++..+++...+.... ..-...++++++..+.+.. .|+.+.+..++..+...+..+
T Consensus 193 ~~~e~~~~l~~~l~~~g-------~~~~~~~~~~~~~~i~~~s-------~G~p~~i~~l~~~~~~~a~~~--------- 249 (269)
T TIGR03015 193 DREETREYIEHRLERAG-------NRDAPVFSEGAFDAIHRFS-------RGIPRLINILCDRLLLSAFLE--------- 249 (269)
T ss_pred CHHHHHHHHHHHHHHcC-------CCCCCCcCHHHHHHHHHHc-------CCcccHHHHHHHHHHHHHHHc---------
Confidence 99999999998887542 2223457889998888865 678889999988887775222
Q ss_pred hhhcccHHHHHHHHHHHH
Q 011578 461 ELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 461 ~~~~i~~~d~~~al~~~~ 478 (482)
....|+.+++..++..++
T Consensus 250 ~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 EKREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 235799999999998864
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=127.38 Aligned_cols=160 Identities=22% Similarity=0.206 Sum_probs=117.0
Q ss_pred CceeEec--CCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh----c-----CCcEEEE
Q 011578 244 PHMAFLG--NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE----A-----EGGILFV 312 (482)
Q Consensus 244 ~~~ll~G--ppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----a-----~~~vl~i 312 (482)
.+-+..| |++.||||+|++||+.++.. .....++++++++..+. ..++++++. . +..|+||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~--~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE--NWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc--cccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 3455668 99999999999999988532 12347999999985321 234444322 1 2269999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHH
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 390 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 390 (482)
||+|.|....| +.|+..|+. +.+.+|++++. ...+ .|++++|+ ..+.|++|+.+++...++
T Consensus 637 DEaD~Lt~~AQ-----------nALLk~lEep~~~~~FILi~N~--~~kI---i~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQDAQ-----------QALRRTMEMFSSNVRFILSCNY--SSKI---IEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCHHHH-----------HHHHHHhhCCCCCeEEEEEeCC--hhhC---chHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999987555 899999985 55556665332 2233 68899998 999999999999999999
Q ss_pred HHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 391 IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 391 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..+.++. ..++++++..++... .|+.|...+.++.+..
T Consensus 700 ~I~~~Eg-----------i~i~~e~L~~Ia~~s-------~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAENEG-----------LELTEEGLQAILYIA-------EGDMRRAINILQAAAA 737 (846)
T ss_pred HHHHhcC-----------CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 8877542 345778888888765 5778888888887654
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=115.53 Aligned_cols=153 Identities=14% Similarity=0.280 Sum_probs=103.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-CCCeEEee
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEVQ 282 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-~~~~~~~~ 282 (482)
.|++++|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|+.+....... ...+..+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~---------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~ 66 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK---------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK 66 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc---------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence 478999999999998876321 12344569999999999999999999885422111 11233333
Q ss_pred cccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~ 352 (482)
+. .++.+ +...++++.+. +...|++||++|.+.. .+.|.|+..+++ +.++|+.|+
T Consensus 67 ~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 67 PI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred cc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeC
Confidence 21 11111 12235555442 2347999999999987 344999999987 445555553
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
++ +.+ .|++++|+ ..++|++|+.++....++..+
T Consensus 132 ~~---~~l---l~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 132 NL---EQI---LDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred Ch---HhC---cHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 33 233 78899999 899999999999988776543
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=125.77 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=82.9
Q ss_pred HHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchhH
Q 011578 301 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 357 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~~ 357 (482)
.|.+|.+|+|||||++.|.+..| ..|++.|+.+ ++.+|++++++..
T Consensus 221 ~L~kAnGGtL~LDei~~L~~~~q-----------~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll 289 (637)
T PRK13765 221 AIHKAHKGVLFIDEINTLDLESQ-----------QSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL 289 (637)
T ss_pred ceeECCCcEEEEeChHhCCHHHH-----------HHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH
Confidence 45577889999999999966433 6677766432 3478888877655
Q ss_pred HHHHhcCccccCCCc---ceeeCCCC---CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 358 KRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~---~~i~~~~~---~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..+ +|.|++||. ..+.|..- +++.+..+++..-+...+ ....+.++.++++++.+.+++....+.
T Consensus 290 ~~~---dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~------~G~l~~f~~eAVa~LI~~~~R~ag~r~ 360 (637)
T PRK13765 290 ENM---HPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKR------DGKIPHFDRDAVEEIIREAKRRAGRKG 360 (637)
T ss_pred Hhh---hHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhh------ccCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 544 899999985 55666532 245566666543333211 012347899999999998875433222
Q ss_pred ---cCcchhHHHHHHHHHHh
Q 011578 432 ---MNGGLVDPMLVNARENL 448 (482)
Q Consensus 432 ---~~~~~l~~~~~~a~~~~ 448 (482)
..-+++.+++..|...+
T Consensus 361 ~lsl~~~~l~~l~r~a~~~a 380 (637)
T PRK13765 361 HLTLKLRDLGGLVRVAGDIA 380 (637)
T ss_pred ccccCHHHHHHHHHHHHHHH
Confidence 33567778877776544
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=127.37 Aligned_cols=208 Identities=25% Similarity=0.324 Sum_probs=155.5
Q ss_pred CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC---CcEEEEec
Q 011578 238 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDE 314 (482)
Q Consensus 238 ~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE 314 (482)
.+..++.+++++||||||||+++++++.. . . .+..++.+...+++.|+++...+.+|..+. ++++|+||
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-G------A-EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-c------C-cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 44568899999999999999999999997 2 1 337788889999999999999999998764 38999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHH
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il 389 (482)
+|.+.+.+..........++.+++..+++ +.++++..++..... +|++++ ||+..+.++.++...+.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGL-----DPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcccc-----ChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999998875566778899999999986 335555543322221 555544 99999999999999999999
Q ss_pred HHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHH
Q 011578 390 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLED 469 (482)
Q Consensus 390 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d 469 (482)
........ .....+...++..+.++ .++++..++..+......|.. ........++.+|
T Consensus 160 ~~~~~~~~---------~~~~~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~r~~---~~~~~~~~~~~~~ 218 (494)
T COG0464 160 QIHTRLMF---------LGPPGTGKTLAARTVGK---------SGADLGALAKEAALRELRRAI---DLVGEYIGVTEDD 218 (494)
T ss_pred HHHHhcCC---------CcccccHHHHHHhcCCc---------cHHHHHHHHHHHHHHHHHhhh---ccCcccccccHHH
Confidence 88766543 22244555555555543 467778888777777666642 1112345789999
Q ss_pred HHHHHHHHHh
Q 011578 470 LEAGLKLLLR 479 (482)
Q Consensus 470 ~~~al~~~~~ 479 (482)
+.++++.+.|
T Consensus 219 ~~~~l~~~~~ 228 (494)
T COG0464 219 FEEALKKVLP 228 (494)
T ss_pred HHHHHHhcCc
Confidence 9999998876
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=111.92 Aligned_cols=157 Identities=16% Similarity=0.177 Sum_probs=107.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+.++++++++...+.++ .+....+|.|||||||||||+...+.|..+... ...+..+.+++
T Consensus 38 ~~l~dv~~~~ei~st~~~~----------------~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-~~~~~m~leln 100 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRY----------------SGMPGLPHLLFYGPPGTGKTSTILANARDFYSP-HPTTSMLLELN 100 (360)
T ss_pred chhhhHhcCCchhhHHHHh----------------ccCCCCCcccccCCCCCCCCCchhhhhhhhcCC-CCchhHHHHhh
Confidence 3456778888887777776 223345599999999999999999999988753 22222345666
Q ss_pred cccccccccccchhhHHHHHHhc----------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA----------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI 349 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a----------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi 349 (482)
+++-.+--+-. .-.+.|..+ .-..+++||+|.+....| ++|-+.++. +.-+.+
T Consensus 101 aSd~rgid~vr---~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-----------nALRRviek~t~n~rF~i 166 (360)
T KOG0990|consen 101 ASDDRGIDPVR---QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-----------NALRRVIEKYTANTRFAT 166 (360)
T ss_pred ccCccCCcchH---HHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-----------HHHHHHHHHhccceEEEE
Confidence 66544332211 111223222 237899999999988666 666665554 444445
Q ss_pred EecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 350 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.+++.+.. .|++++|| ..++|.+.+.++..+.+..++....
T Consensus 167 i~n~~~ki------~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 167 ISNPPQKI------HPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred eccChhhc------Cchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 55555443 89999999 8999999999999999999887764
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=107.28 Aligned_cols=171 Identities=20% Similarity=0.311 Sum_probs=114.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
+.++.+.+.++....++... .....+|++||||+|+||.|.+.++-++++..|.-
T Consensus 10 ksl~~l~~~~e~~~~Lksl~----------------~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLS----------------STGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred chhhhcccHHHHHHHHHHhc----------------ccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 34556777777777777641 12345799999999999999999999999643321
Q ss_pred --CC-----------CCeEEeecccccccccccch-hhHHHHHHhc------------CCcEEEEecccccccCCCCCCC
Q 011578 274 --PT-----------DRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA------------EGGILFVDEAYRLIPMQKADDK 327 (482)
Q Consensus 274 --~~-----------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a------------~~~vl~iDE~d~l~~~~~~~~~ 327 (482)
.+ ..-+++++|+ .|--. ..+.+++++- ...|++|-|+|.|....|
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ---- 144 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ---- 144 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH----
Confidence 11 1122333332 22211 1233333221 128999999999998666
Q ss_pred hhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccccc
Q 011578 328 DYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYG 404 (482)
Q Consensus 328 ~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 404 (482)
.+|-.-|+. ...+|+.++...++ -|++++|+ ..+++|.|+.+|+..++...++++.
T Consensus 145 -------~aLRRTMEkYs~~~RlIl~cns~Sri------IepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~------- 203 (351)
T KOG2035|consen 145 -------HALRRTMEKYSSNCRLILVCNSTSRI------IEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG------- 203 (351)
T ss_pred -------HHHHHHHHHHhcCceEEEEecCcccc------hhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc-------
Confidence 556666654 55666667666655 57788898 8999999999999999999999874
Q ss_pred ccccCcccHHHHHHHHHHH
Q 011578 405 FKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~ 423 (482)
+.+ ..+.+.++++..
T Consensus 204 l~l----p~~~l~rIa~kS 218 (351)
T KOG2035|consen 204 LQL----PKELLKRIAEKS 218 (351)
T ss_pred ccC----cHHHHHHHHHHh
Confidence 333 356777777765
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.3e-12 Score=128.93 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=126.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch--------h--hHHHHHHhcCCcEEEE
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG--------P--KTRRRIKEAEGGILFV 312 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~--~~~~~~~~a~~~vl~i 312 (482)
..++||.|+||||||++|++|++.+.. ..+|+.+.........+|... . .....+.++.++||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-----~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-----IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-----CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 568999999999999999999997653 226777665333333444310 0 0112355678899999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeC
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 377 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~ 377 (482)
||++.+.+.. .+.|++.|+++. +.+|++.++.... -...+++.+||+..+.+
T Consensus 91 DEi~rl~~~~-----------q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~LldRf~l~v~~ 157 (589)
T TIGR02031 91 DMANLLDDGL-----------SNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLLDRLALHVSL 157 (589)
T ss_pred cchhhCCHHH-----------HHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHHHhccCeeec
Confidence 9999999844 488999997653 4666665544311 12368899999888777
Q ss_pred CC-CCHHHHHHHHHHHHhcccccc------------ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHH
Q 011578 378 ND-FNSEELAKILHIKMNNQTEDS------------LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 378 ~~-~~~~~~~~il~~~l~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
.. ++.+++.+|++.++....... ......-...++++.+..++..... .. ...-|....++..|
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~--~g-v~s~Ra~i~~~r~A 234 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAAS--LG-ISGHRADLFAVRAA 234 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHH--cC-CCCccHHHHHHHHH
Confidence 54 456778999988763211000 0001112234566766666665531 10 11123344444444
Q ss_pred HHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 445 RENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 445 ~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
...++. +....|+.+|+..|..-+-+
T Consensus 235 rA~Aal---------~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 235 KAHAAL---------HGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHH---------hCCCCCCHHHHHHHHHHHhh
Confidence 444322 23467999999999876643
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=116.53 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc---cchhhH-HHHHH-hcCCcEEEEeccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKT-RRRIK-EAEGGILFVDEAY 316 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~-~~~~~-~a~~~vl~iDE~d 316 (482)
...+++|+||||||||++|+++|..++. +|+.++...-.....| ..+... ..++. .+.+++|||||++
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~-------pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId 190 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDL-------DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEID 190 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcC
Confidence 4568999999999999999999998765 6776663211111111 111100 01112 3568999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHhhhcC-------------CcEEEEEecCchh--HHHH----HhcCccccCCCcceeeC
Q 011578 317 RLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEP--MKRV----IASNEGFCRRVTKFFHF 377 (482)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~ll~~l~~-------------~~~~vi~~~~~~~--~~~~----~~~~~~l~~R~~~~i~~ 377 (482)
.+.+..+ ..|...++. ..+.+|+|+++.. .... ...++++++|| ..|+|
T Consensus 191 ~a~p~vq-----------~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~ 258 (383)
T PHA02244 191 ASIPEAL-----------IIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEF 258 (383)
T ss_pred cCCHHHH-----------HHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeC
Confidence 9987433 444444432 3567777766521 1111 12379999999 68999
Q ss_pred CCCCHHH
Q 011578 378 NDFNSEE 384 (482)
Q Consensus 378 ~~~~~~~ 384 (482)
+.|+..|
T Consensus 259 dyp~~~E 265 (383)
T PHA02244 259 DYDEKIE 265 (383)
T ss_pred CCCcHHH
Confidence 9998433
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-13 Score=107.35 Aligned_cols=109 Identities=25% Similarity=0.309 Sum_probs=59.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc--cccccccccchhhH-HHHHHhcC----CcEEEEecccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT--DLVGEFVGHTGPKT-RRRIKEAE----GGILFVDEAYR 317 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~-~~~~~~a~----~~vl~iDE~d~ 317 (482)
|+||+|+||+|||++|+++|+.++. .|..+... -+.+...|..--.. ...|+-.+ ..|+|+||+.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~-------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL-------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC-------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc
Confidence 6899999999999999999998876 55555443 23333333211000 01111112 27999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHhhhcCCcE-------------EEEEecCchhHHHHHhcCccccCCC
Q 011578 318 LIPMQKADDKDYGIEALEEIMSVMDGGKV-------------VVIFAGYSEPMKRVIASNEGFCRRV 371 (482)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------------~vi~~~~~~~~~~~~~~~~~l~~R~ 371 (482)
..++.| +.||+.|++++| +||+|.++....-......++.+||
T Consensus 74 appktQ-----------sAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 APPKTQ-----------SALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S-HHHH-----------HHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CCHHHH-----------HHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 998655 999999987443 5666645433333334467778887
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=110.12 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=58.9
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCch-----hHH--HHHhcCccccCCCcceeeCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSE-----PMK--RVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~-----~~~--~~~~~~~~l~~R~~~~i~~~~ 379 (482)
|||||||++.|.- +..+-|-.+|+. -..+||+||+.- ..+ ...-.+..|++|+ .+|...+
T Consensus 280 GVLFIDEvHmLDi-----------EcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~t~p 347 (398)
T PF06068_consen 280 GVLFIDEVHMLDI-----------ECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIRTKP 347 (398)
T ss_dssp -EEEEESGGGSBH-----------HHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEEE--
T ss_pred ceEEecchhhccH-----------HHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEECCC
Confidence 9999999999976 555667777776 345566655311 111 0000134678899 8999999
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
|+.+|..+|++..++++. ..++.+++..++.-..
T Consensus 348 y~~~ei~~Il~iR~~~E~-----------v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 348 YSEEEIKQILKIRAKEED-----------VEISEDALDLLTKIGV 381 (398)
T ss_dssp --HHHHHHHHHHHHHHCT-------------B-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhhhc-----------CcCCHHHHHHHHHHhh
Confidence 999999999999998764 5678889988887543
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=109.41 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=91.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
.+..+||+||||+|||++|+.+++.+........ ..+..+... +..++ ...++++++.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~--~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIK--VDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCC--HHHHHHHHHH
Confidence 3456999999999999999999998864211000 011211111 01111 1234444433
Q ss_pred c-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCccee
Q 011578 305 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 305 a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
+ ...|++|||+|.+... ..+.|+..|++ ...++|++++. . ..+ .+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~~~~~il~~~~-~-~~l---~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPPNTLFILITPS-P-EKL---LPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCCCeEEEEEECC-h-HhC---hHHHHhhc-EEe
Confidence 2 3479999999999873 44888888886 23444444332 2 333 78899999 799
Q ss_pred eCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
+|++|+.+++.++++.. +++++++..++...
T Consensus 151 ~~~~~~~~~~~~~l~~~-----------------gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ-----------------GISEEAAELLLALA 181 (188)
T ss_pred eCCCCCHHHHHHHHHHc-----------------CCCHHHHHHHHHHc
Confidence 99999999998888764 13556777666654
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=110.43 Aligned_cols=174 Identities=14% Similarity=0.167 Sum_probs=108.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch-hhHHHHHHh-cCCcEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKE-AEGGILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-a~~~vl~iDE~d~l~~~ 321 (482)
..+++|||+|+|||.|.+++++++..... ...++.+++.++...+..... ..+.+..+. ...-+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~--~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP--GKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT--TS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc--cccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc
Confidence 45899999999999999999998865322 235677777666544332111 112222232 24489999999998753
Q ss_pred CCCCCChhHHHHHHHHHhh-hcCCcEEEEEecC-chhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 322 QKADDKDYGIEALEEIMSV-MDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~-l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
. ...+.+-.++.. .+.++.+|+.+.. +..+.. ..|.+.+|| ...+++.+|+.+++.+|++..+....
T Consensus 113 ~------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~---~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 Q------RTQEELFHLFNRLIESGKQLILTSDRPPSELSG---LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp H------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT---S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred h------HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc---cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 2 122333333333 3456666666533 333322 368889999 55899999999999999999888643
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++++.+..+++.. ..+.|.+..++.+...
T Consensus 184 -----------~~l~~~v~~~l~~~~-------~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 184 -----------IELPEEVIEYLARRF-------RRDVRELEGALNRLDA 214 (219)
T ss_dssp -------------S-HHHHHHHHHHT-------TSSHHHHHHHHHHHHH
T ss_pred -----------CCCcHHHHHHHHHhh-------cCCHHHHHHHHHHHHH
Confidence 346888899988875 5677778777776544
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-10 Score=114.54 Aligned_cols=192 Identities=16% Similarity=0.225 Sum_probs=124.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHH---------------HHcCCCC--CCCCC-CceeEecCCCCchHHHHHHHH
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERR---------------KALGLKV--GARRP-PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~---------------~~~~~~~--~~~~~-~~~ll~GppGtGKT~la~~la 264 (482)
+.|.++.|-+.+-+.+..|++...-.-.. ..+.+.. ...++ +-+||+||||-||||||+.+|
T Consensus 268 k~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViA 347 (877)
T KOG1969|consen 268 KKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347 (877)
T ss_pred hHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHH
Confidence 66888899888877777776533211111 1111111 11223 337799999999999999999
Q ss_pred HHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh-----------cCCcEEEEecccccccCCCCCCChhHHHH
Q 011578 265 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-----------AEGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
+..++ .++++++++-.+ ...+++.++. .++..|+|||||.-.+ .+
T Consensus 348 kqaGY-------sVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-----------~~ 403 (877)
T KOG1969|consen 348 KQAGY-------SVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-----------AA 403 (877)
T ss_pred HhcCc-------eEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH-----------HH
Confidence 99988 899999998533 2233332221 2457788999996653 55
Q ss_pred HHHHHhhhcC---------C---------------cEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHH
Q 011578 334 LEEIMSVMDG---------G---------------KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 334 ~~~ll~~l~~---------~---------------~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~ 387 (482)
++.++..+.. + +-+|..| ++.+ .|+|+. -|..++.|++|+..-+.+
T Consensus 404 Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICIC--NdLY------aPaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 404 VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICIC--NDLY------APALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEe--cCcc------chhhhhcccceEEEEecCCChhHHHH
Confidence 6777766652 0 1244445 3333 466644 567899999999988888
Q ss_pred HHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHH
Q 011578 388 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 388 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
-|+.++..+. ..++..+|..+++.+. ++.|..-|-++-.
T Consensus 476 RL~~IC~rE~-----------mr~d~~aL~~L~el~~-------~DIRsCINtLQfL 514 (877)
T KOG1969|consen 476 RLNEICHREN-----------MRADSKALNALCELTQ-------NDIRSCINTLQFL 514 (877)
T ss_pred HHHHHHhhhc-----------CCCCHHHHHHHHHHhc-------chHHHHHHHHHHH
Confidence 8888777653 4568889999998773 4444444544443
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=113.66 Aligned_cols=155 Identities=20% Similarity=0.268 Sum_probs=89.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...++++.+.+...+.+...+. ...+++|+||||||||++|+.+|..+..........++.+
T Consensus 171 ~~~l~d~~i~e~~le~l~~~L~------------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtF 232 (459)
T PRK11331 171 EDALNDLFIPETTIETILKRLT------------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF 232 (459)
T ss_pred HHHhhcccCCHHHHHHHHHHHh------------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEee
Confidence 3346677787777766655421 3568999999999999999999998753211111223444
Q ss_pred ecc----cccccc----cccc--hhhHHHHHHhc-----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---
Q 011578 282 QRT----DLVGEF----VGHT--GPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--- 343 (482)
Q Consensus 282 ~~~----~~~~~~----~g~~--~~~~~~~~~~a-----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--- 343 (482)
+.+ +++..+ +|.. ...+.+.+..| .+.||||||+++...++ +...+++.|+.
T Consensus 233 HpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~r 302 (459)
T PRK11331 233 HQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKR 302 (459)
T ss_pred cccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhcccccc
Confidence 432 222111 1211 11222333333 35899999999887643 22333443331
Q ss_pred ---------------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCC-CCHHHHH
Q 011578 344 ---------------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELA 386 (482)
Q Consensus 344 ---------------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~-~~~~~~~ 386 (482)
..+.||+|.++.+- .+...++||+||| ..|++.+ ++.++..
T Consensus 303 g~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF-~fi~i~p~~~~~~~~ 365 (459)
T PRK11331 303 GENWSVPLTYSENDEERFYVPENVYIIGLMNTADR-SLAVVDYALRRRF-SFIDIEPGFDTPQFR 365 (459)
T ss_pred ccccceeeeccccccccccCCCCeEEEEecCcccc-chhhccHHHHhhh-heEEecCCCChHHHH
Confidence 34677887665442 1223499999999 6666654 5554333
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-11 Score=117.57 Aligned_cols=144 Identities=22% Similarity=0.227 Sum_probs=93.5
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCC------------
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL------------ 273 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~------------ 273 (482)
++++.+.....+..+.... ...+| +||+||||+|||++|.++|+.+......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~ 66 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCK 66 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhh
Confidence 3566666666666653211 13345 9999999999999999999999742211
Q ss_pred -----CCCCeEEeecccccccccccchhhHHHHHH---hc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh
Q 011578 274 -----PTDRVTEVQRTDLVGEFVGHTGPKTRRRIK---EA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 341 (482)
Q Consensus 274 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l 341 (482)
....++++++++....-+. ...++++.+ .. ...|++|||+|.+... +.+.|+..+
T Consensus 67 ~~~~~~~~d~lel~~s~~~~~~i~--~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-----------A~nallk~l 133 (325)
T COG0470 67 LIPAGNHPDFLELNPSDLRKIDII--VEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-----------AANALLKTL 133 (325)
T ss_pred HHhhcCCCceEEecccccCCCcch--HHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHh
Confidence 1236788888775543211 122333322 22 3389999999999984 449999999
Q ss_pred cC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCCCCHHHH
Q 011578 342 DG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 385 (482)
Q Consensus 342 ~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 385 (482)
+. ...++|+ |+++..+ -|.+++|+ ..++|++++....
T Consensus 134 Eep~~~~~~il~~n~~~~i------l~tI~SRc-~~i~f~~~~~~~~ 173 (325)
T COG0470 134 EEPPKNTRFILITNDPSKI------LPTIRSRC-QRIRFKPPSRLEA 173 (325)
T ss_pred ccCCCCeEEEEEcCChhhc------cchhhhcc-eeeecCCchHHHH
Confidence 86 3344444 4333333 67899999 8999988665433
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-11 Score=118.65 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=86.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc--ccccccccchhhHH----HHHHhcCC-------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--LVGEFVGHTGPKTR----RRIKEAEG-------G 308 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~----~~~~~a~~-------~ 308 (482)
...+++|.||||||||++|+.+|..++. +|+.+++.. ..++.+|...-... ..|.-..+ +
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~-------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ 114 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGL-------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRV 114 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCC-------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccce
Confidence 4578999999999999999999999985 788777763 22334443221111 11111111 4
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc--------------EEEEEecCchhHHHHHhcCccccCCCcce
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------------VVVIFAGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
|+|+|||++..++.+ +.|++.|++.. +++++|+|+-........++++++||...
T Consensus 115 ill~DEInra~p~~q-----------~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~ 183 (329)
T COG0714 115 ILLLDEINRAPPEVQ-----------NALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLR 183 (329)
T ss_pred EEEEeccccCCHHHH-----------HHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEE
Confidence 999999999998555 89999998622 34555534333222222378899999999
Q ss_pred eeCCCCCHHHHHHHHHH
Q 011578 375 FHFNDFNSEELAKILHI 391 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~ 391 (482)
+.++.|+.++-..++..
T Consensus 184 ~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 184 IYVDYPDSEEEERIILA 200 (329)
T ss_pred EecCCCCchHHHHHHHH
Confidence 99999955544444433
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-11 Score=113.99 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=98.5
Q ss_pred HHhhhhc-hHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 204 ELSNIVG-LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 204 ~l~~i~G-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
.|+.+.| ++.+++.+...+.. ...+..+||+||+|+||+++|+++|+.+.........
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~---------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~ 67 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK---------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT 67 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH
Confidence 3677888 88888888876321 1234456999999999999999999988643211111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+..+.+. ++.++ -..++++.+. +...|++|||+|.+.. .+.|.|+
T Consensus 68 ~c~~~~~~~hpD~~~i~~~---~~~i~--id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLL 131 (329)
T PRK08058 68 NCKRIDSGNHPDVHLVAPD---GQSIK--KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLL 131 (329)
T ss_pred HHHHHhcCCCCCEEEeccc---cccCC--HHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHH
Confidence 11111111 11111 1234444332 2347999999999987 4459999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
..|++ ...++|++++.. ..+ .|++++|+ ..++|++|+.++..+.++.
T Consensus 132 K~LEEPp~~~~~Il~t~~~--~~l---l~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEPSGGTTAILLTENK--HQI---LPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCCCCCceEEEEeCCh--HhC---cHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 99997 455555543321 122 68899999 9999999999998777753
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-11 Score=102.12 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhh------HHHHHHhcCCcEEEEecc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK------TRRRIKEAEGGILFVDEA 315 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~a~~~vl~iDE~ 315 (482)
...+++++||||||||++++.+++.+.. ...+++.+++.............. ..........++|+|||+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR----PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc----CCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence 4568999999999999999999998852 223677777766544332221111 111222345699999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhc----CCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~----~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
+.+.+... ...+..+..... ...+.+|++++.... ...++.+.+||+.++.+++
T Consensus 94 ~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 94 DSLSRGAQ-------NALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred hhhhHHHH-------HHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccEeecCC
Confidence 98833111 122222222222 246677777665543 1226778889988888763
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-11 Score=120.48 Aligned_cols=175 Identities=18% Similarity=0.243 Sum_probs=127.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----ccccccchhhHH--------HHHHhcCCc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGHTGPKTR--------RRIKEAEGG 308 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~--------~~~~~a~~~ 308 (482)
...++++.|.|||||-.+||+|.+... ..+||+.+++..+. +.+||..+.... ..+++|.++
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~-----~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG 409 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSE-----AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG 409 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhccc-----ccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC
Confidence 557899999999999999999998443 57799999997653 335555333322 356788899
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc------------EEEEEecCchhHHHHHhcCccc----cCCC-
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------VVVIFAGYSEPMKRVIASNEGF----CRRV- 371 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------------~~vi~~~~~~~~~~~~~~~~~l----~~R~- 371 (482)
.||+|||..+.-.-| ..||+.++++. |.||.||+.+--. +.+ +-.| ..|+
T Consensus 410 tlFldeIgd~p~~~Q-----------s~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~-lv~-~g~fredLyyrL~ 476 (606)
T COG3284 410 TLFLDEIGDMPLALQ-----------SRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQ-LVE-QGRFREDLYYRLN 476 (606)
T ss_pred ccHHHHhhhchHHHH-----------HHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHH-HHH-cCCchHHHHHHhc
Confidence 999999998876444 89999998754 4677776655433 322 2223 3355
Q ss_pred cceeeCCCCCH-HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 372 TKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 372 ~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
...|.+|++.. .++...+.+++.++.. -...++.+++..+..+.| |||.|+++|+++.+....
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~--------~~~~l~~~~~~~l~~~~W------PGNirel~~v~~~~~~l~ 540 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKREND--------WRLQLDDDALARLLAYRW------PGNIRELDNVIERLAALS 540 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHccC--------CCccCCHHHHHHHHhCCC------CCcHHHHHHHHHHHHHcC
Confidence 55677777763 5666677777776542 234678899999999999 999999999999987754
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-10 Score=105.18 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEecCchhHHHH--HhcCccccCC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRV--IASNEGFCRR 370 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~~~~~~~~~--~~~~~~l~~R 370 (482)
..||+-|+|+.+... ++++.||..++++. .+||+++++..+... ....++|++|
T Consensus 236 NrGi~~f~Ei~K~~~-----------~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR 304 (361)
T smart00763 236 NRGILEFVEMFKADI-----------KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDR 304 (361)
T ss_pred cCceEEEeehhcCCH-----------HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhc
Confidence 348888899988876 66799999998633 356666665554433 2346999999
Q ss_pred CcceeeCCCCCH-HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHh
Q 011578 371 VTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 427 (482)
Q Consensus 371 ~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 427 (482)
|. .+.+|.+.. ++-.+|.+..+.... .....+.+..+...+....-++
T Consensus 305 ~~-~i~vpY~l~~~~E~~Iy~k~~~~s~--------~~~~~~aP~~le~aa~~avltR 353 (361)
T smart00763 305 II-KVKVPYCLRVSEEAQIYEKLLRNSD--------LTEAHIAPHTLEMAALFSVLTR 353 (361)
T ss_pred eE-EEeCCCcCCHHHHHHHHHHHhccCc--------CcccccCchHHHHHHHHHHHhh
Confidence 94 888887764 677788888776532 1124455555555555444333
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-12 Score=106.67 Aligned_cols=108 Identities=28% Similarity=0.411 Sum_probs=66.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc--cccccccchhh------HHHHHHh--cCCcEEEEec
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--VGEFVGHTGPK------TRRRIKE--AEGGILFVDE 314 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~------~~~~~~~--a~~~vl~iDE 314 (482)
+|+|+||||||||++|+.+|+.+.. +++.++.+.. ..+++|.-... ....+.. .+++|+||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR-------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECC
Confidence 5899999999999999999999954 6666666542 11222221000 0001111 1569999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcCC---------------------cEEEEEecCchhHHHHHhcCccccCCC
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------------KVVVIFAGYSEPMKRVIASNEGFCRRV 371 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------------------~~~vi~~~~~~~~~~~~~~~~~l~~R~ 371 (482)
++...+ .++..|+..++.+ .+.+|+|.++.. ...-..++++++||
T Consensus 74 in~a~~-----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPP-----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF 139 (139)
T ss_dssp CGG--H-----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred cccCCH-----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence 998876 6667777777651 167777766555 22233478899887
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-10 Score=109.04 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=123.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCC-cEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-~vl~iDE~d~l~~ 320 (482)
....+++|||+|.|||-|++++++.....+. +..++.++...+...++-..-.+-.+-|++... -+|+||+++.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~--~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP--NARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC--CceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 4567999999999999999999999876442 234666666665554443322222233443323 5899999999987
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCCcEEEEEec-CchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~-~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
+.. .-.+..+.|-...+.++-+|+.+. .|..+..+ .|.|++|| ..++.+.+|+.+.+..|++.......
T Consensus 190 k~~-----~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~---~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 190 KER-----TQEEFFHTFNALLENGKQIVLTSDRPPKELNGL---EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred Chh-----HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc---cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 532 123566677777777774444442 23333323 68899999 67889999999999999999665432
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..++++.+..++... ..|.|++..++++....+
T Consensus 262 -----------~~i~~ev~~~la~~~-------~~nvReLegaL~~l~~~a 294 (408)
T COG0593 262 -----------IEIPDEVLEFLAKRL-------DRNVRELEGALNRLDAFA 294 (408)
T ss_pred -----------CCCCHHHHHHHHHHh-------hccHHHHHHHHHHHHHHH
Confidence 466788888888876 467788888877766554
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=100.32 Aligned_cols=136 Identities=18% Similarity=0.253 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC----------------
Q 011578 210 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------------- 273 (482)
Q Consensus 210 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------------- 273 (482)
|++.+.+.|...+.. ..-+..+||+||+|+||+++|+.+|+.+......
T Consensus 1 gq~~~~~~L~~~~~~---------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~ 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEG 65 (162)
T ss_dssp S-HHHHHHHHHHHHC---------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHc---------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhc
Confidence 667777777765321 1234458999999999999999999988643322
Q ss_pred CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--C
Q 011578 274 PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G 344 (482)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~ 344 (482)
....+..+.+..... .+ .-..++++.+.. ...|++|||+|.+.. ++.|.||..||+ .
T Consensus 66 ~~~d~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp~ 131 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPPE 131 (162)
T ss_dssp -CTTEEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTTT
T ss_pred cCcceEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCCC
Confidence 123344443332100 11 123445554432 347999999999988 555999999997 3
Q ss_pred cEEE-EEecCchhHHHHHhcCccccCCCcceeeCCCCC
Q 011578 345 KVVV-IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN 381 (482)
Q Consensus 345 ~~~v-i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 381 (482)
.+++ +.+++.+.+ .|.+++|+ ..+.|++++
T Consensus 132 ~~~fiL~t~~~~~i------l~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 132 NTYFILITNNPSKI------LPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp TEEEEEEES-GGGS-------HHHHTTS-EEEEE----
T ss_pred CEEEEEEECChHHC------hHHHHhhc-eEEecCCCC
Confidence 4444 445444444 68889999 888887754
|
... |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=110.84 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----------------CeEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
.+..+||+||+|+|||++|+++|+.+......... .+..+.+.. .++.+ .-..++++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~i--~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKTI--KVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCCC--CHHHHHHHHHH
Confidence 45569999999999999999999998753211111 122222210 00111 12345554432
Q ss_pred c-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCccee
Q 011578 305 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 305 a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
. ...|++|||+|++.. .+.|.||..|++ +..++|++|+.... + .|.+++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp~~~~fiL~t~~~~~--l---l~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPSGDTVLLLISHQPSR--L---LPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCCCCeEEEEEECChhh--C---cHHHHhhc-eee
Confidence 2 347999999999988 455999999998 45555555433222 2 78999999 789
Q ss_pred eCCCCCHHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHIK 392 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~ 392 (482)
.|++|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 161 ACPLPSNEESLQWLQQA 177 (328)
T ss_pred eCCCcCHHHHHHHHHHh
Confidence 99999999998888764
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-11 Score=101.85 Aligned_cols=113 Identities=20% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
....+|+++|+|||||+++|++|+... .....+|+.+++..+. .+.++.+.+++|||+|+|.|.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~----~~~~~~~~~~~~~~~~-----------~~~l~~a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYS----GRANGPFIVIDCASLP-----------AELLEQAKGGTLYLKNIDRLSP 83 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTT----TTCCS-CCCCCHHCTC-----------HHHHHHCTTSEEEEECGCCS-H
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhc----CccCCCeEEechhhCc-----------HHHHHHcCCCEEEECChHHCCH
Confidence 456789999999999999999999843 3344566666655432 5577888999999999999998
Q ss_pred CCCCCCChhHHHHHHHHHhhhc---CCcEEEEEecCchhHHHH--HhcCccccCCC-cceeeCCC
Q 011578 321 MQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRV--IASNEGFCRRV-TKFFHFND 379 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~---~~~~~vi~~~~~~~~~~~--~~~~~~l~~R~-~~~i~~~~ 379 (482)
..| ..|+..++ ..++.+|+++..+....+ -..++.|..|+ ...|.+|+
T Consensus 84 ~~Q-----------~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 84 EAQ-----------RRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp HHH-----------HHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred HHH-----------HHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 655 45555554 456677776654432211 11135556666 34566654
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=99.63 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=134.2
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC--CCCCCCeEEeeccc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRTD 285 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~--~~~~~~~~~~~~~~ 285 (482)
-+|....++.+.....-+..| .....+++|++|++|.|||++++.+.+.-.... -....|++.+....
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 378887777777654434333 224567899999999999999999998553211 01123566665532
Q ss_pred cccc---------ccc----------cchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE
Q 011578 286 LVGE---------FVG----------HTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 346 (482)
Q Consensus 286 ~~~~---------~~g----------~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 346 (482)
-.+. .+| +....+..+|+...-.+|+|||++.+..... ...+.++|.|-..-.+-++
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNELQI 181 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhccCC
Confidence 1111 011 1122233556666779999999999865221 2233555555555445677
Q ss_pred EEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh
Q 011578 347 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 425 (482)
Q Consensus 347 ~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (482)
-+|+.++.+... .+..||-+.+|| ..+.+|.-.. ++-..++..+-...+ ++-...+....++...-..+
T Consensus 182 piV~vGt~~A~~-al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LP-------Lr~~S~l~~~~la~~i~~~s- 251 (302)
T PF05621_consen 182 PIVGVGTREAYR-ALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALP-------LRKPSNLASPELARRIHERS- 251 (302)
T ss_pred CeEEeccHHHHH-HhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCC-------CCCCCCCCCHHHHHHHHHHc-
Confidence 777777777665 567799999999 6777777664 566777777665554 23334455566665555544
Q ss_pred HhhccccCcchhHHHHHHHHHHh
Q 011578 426 EKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 426 ~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.|.-.++..++..|...+
T Consensus 252 -----~G~iG~l~~ll~~aA~~A 269 (302)
T PF05621_consen 252 -----EGLIGELSRLLNAAAIAA 269 (302)
T ss_pred -----CCchHHHHHHHHHHHHHH
Confidence 677788889988888776
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6e-10 Score=106.51 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=106.9
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
|.-++|++.+|..|.-- .+ .....++|+.|+.||||||++|+||..|...-... +.-+.+++.
T Consensus 16 f~aivGqd~lk~aL~l~--av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 16 FTAIVGQDPLKLALGLN--AV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred hhhhcCchHHHHHHhhh--hc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 55689999999887643 11 23557899999999999999999999885322111 222222222
Q ss_pred cc----------------------------------cccccccc--hhhHH--------HHHHhcCCcEEEEeccccccc
Q 011578 285 DL----------------------------------VGEFVGHT--GPKTR--------RRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 285 ~~----------------------------------~~~~~g~~--~~~~~--------~~~~~a~~~vl~iDE~d~l~~ 320 (482)
+- ....+|.- ++.++ .++.+|.+|||+|||+..|..
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d 158 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD 158 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH
Confidence 11 11133431 11111 245567789999999988876
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCC---------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHH
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE 384 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~---------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~ 384 (482)
.+++.||..++.| ++++|++.|+..- ++ .|.|++||...+....|. .++
T Consensus 159 -----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG-eL---rpqLlDRfg~~v~~~~~~~~~~ 223 (423)
T COG1239 159 -----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG-EL---RPQLLDRFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc-cc---chhhHhhhcceeeccCCCCHHH
Confidence 6779999998774 3577888776632 23 799999999999986555 689
Q ss_pred HHHHHHHHHh
Q 011578 385 LAKILHIKMN 394 (482)
Q Consensus 385 ~~~il~~~l~ 394 (482)
+.+|+++.+.
T Consensus 224 rv~Ii~r~~~ 233 (423)
T COG1239 224 RVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-09 Score=92.33 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=125.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.+.+++|.+.+++.+.+-...+ ....+..+|||+|.-|||||+++||+-+++...+. .+++++
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F------------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----rLVEV~ 120 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQF------------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL----RLVEVD 120 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHH------------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC----eEEEEc
Confidence 45778999999999998764444 22346678999999999999999999999987665 489999
Q ss_pred cccccccccccchhhHHHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~~~ 355 (482)
..++.. -..+-+.++.. ..=|||.|+.- + ++++ .....|-..||+ ..|++.+|++..
T Consensus 121 k~dl~~------Lp~l~~~Lr~~~~kFIlFcDDLS-F------e~gd---~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 121 KEDLAT------LPDLVELLRARPEKFILFCDDLS-F------EEGD---DAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHHhh------HHHHHHHHhcCCceEEEEecCCC-C------CCCc---hHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 887642 12233334433 33788988862 1 1111 223455666665 245555554322
Q ss_pred hHH-HHHh----------------cCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHH
Q 011578 356 PMK-RVIA----------------SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 418 (482)
Q Consensus 356 ~~~-~~~~----------------~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (482)
-.. +... .--++.+||...+.|++++.++-..|+..+.++.. ..++++.+..
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~-----------l~~~~e~l~~ 253 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG-----------LDISDEELHA 253 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHH
Confidence 211 0100 01346779999999999999999999999987643 2344555555
Q ss_pred HHHHHhhHhhccccCcchhHHHHHHH
Q 011578 419 LIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
.+-... ..+..-+||-..+.++..
T Consensus 254 eAl~WA--t~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 254 EALQWA--TTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHHH--HhcCCCccHhHHHHHHHH
Confidence 554332 222234566666655443
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=114.57 Aligned_cols=242 Identities=17% Similarity=0.284 Sum_probs=145.8
Q ss_pred hhhhchHHHHHHHHHHH-HHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe---EEe
Q 011578 206 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV---TEV 281 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~---~~~ 281 (482)
..|.|++.+|+.|.-.+ ... .+...-........|+||.|.||||||.+-+.+++.+.. ++..++.- ..+
T Consensus 286 PsIyG~e~VKkAilLqLfgGv-----~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr-~vytsgkgss~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGV-----KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR-GVYTSGKGSSAAGL 359 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCC-----cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc-eEEEccccccccCc
Confidence 36889999988876431 111 010111111123468999999999999999999987753 11111100 001
Q ss_pred eccc----ccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEE---------
Q 011578 282 QRTD----LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV--------- 348 (482)
Q Consensus 282 ~~~~----~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~v--------- 348 (482)
+++- ..++|+=+. .++-.|.+||..|||+|++..... +.+.+.|+...+-+
T Consensus 360 TAav~rd~~tge~~Lea-----GALVlAD~Gv~cIDEfdKm~~~dr-----------~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 360 TAAVVRDKVTGEWVLEA-----GALVLADGGVCCIDEFDKMNEEDR-----------VAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred eeEEEEccCCCeEEEeC-----CEEEEecCCEEEEEeccCCChHHH-----------HHHHHHHHhcEeeecccceeeec
Confidence 1110 011122111 234457789999999999976433 77888888644322
Q ss_pred ------EEecCc--------hhHHHHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHHhccc----------------
Q 011578 349 ------IFAGYS--------EPMKRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQT---------------- 397 (482)
Q Consensus 349 ------i~~~~~--------~~~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l~~~~---------------- 397 (482)
++|.++ .+...-+..+++|++|||.++.+ ..|+++.=..|....+....
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 222111 11122333458899999987775 56666544445444444331
Q ss_pred --------cccccccc-cccCcccHHHHHHHHHHHhhHhhc---------cccCcchhHHHHHHHHHHhhhhhcCCCCCh
Q 011578 398 --------EDSLLYGF-KLHSSCSMDAIAALIEKETTEKQR---------REMNGGLVDPMLVNARENLDLRLSFDCLDT 459 (482)
Q Consensus 398 --------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~ 459 (482)
+....|.- ...|.++.++.+.+.+.|...+.. .+.-.|+|..+++.+...+..|++
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS------ 577 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLS------ 577 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhcc------
Confidence 01112222 255889999999999988855432 234579999999999998888877
Q ss_pred hhhhcccHHHHHHHHHHHH
Q 011578 460 DELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 460 ~~~~~i~~~d~~~al~~~~ 478 (482)
..++.+|..+|++-+.
T Consensus 578 ---~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 578 ---DVVEEEDVDEAIRLVD 593 (682)
T ss_pred ---CCCCHHHHHHHHHHHH
Confidence 4689999999988765
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=102.86 Aligned_cols=206 Identities=18% Similarity=0.197 Sum_probs=138.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH---HcCCCCCCCeEEeeccccccc----------ccccch------hhHHHHHH--
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY---MVGILPTDRVTEVQRTDLVGE----------FVGHTG------PKTRRRIK-- 303 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~g~~~------~~~~~~~~-- 303 (482)
-+.+.|-||||||.+++.+-++|. ..+....-.++++++..+.+. +-|+.. ..+..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 577889999999999999999886 345555667889998776542 334321 12223343
Q ss_pred --hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc--CCcEEEEE-ecCchhHHHHHhcCccccCCC-cceeeC
Q 011578 304 --EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIF-AGYSEPMKRVIASNEGFCRRV-TKFFHF 377 (482)
Q Consensus 304 --~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~--~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~-~~~i~~ 377 (482)
....+||+|||.|.|....| .++-.|..+-. ..+++||+ ++|-+-.+.++ .+...+|+ -.+|.|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~Q--------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l--~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQ--------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLL--MNRVSSRLGLTRICF 573 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccH--------HHHHHHhcCCcCCCCceEEEEecccccCHHHHh--ccchhhhccceeeec
Confidence 12348999999999998877 45444444432 35555555 55555445553 34455666 368999
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCC
Q 011578 378 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL 457 (482)
Q Consensus 378 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~ 457 (482)
.+++.+++.+|+...|+.. ..++.+++.-.+++- ....|+.|....++++|.+.+..+....
T Consensus 574 ~pYth~qLq~Ii~~RL~~~------------~~f~~~aielvarkV----AavSGDaRraldic~RA~Eia~~~~~~~-- 635 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGL------------DAFENKAIELVARKV----AAVSGDARRALDICRRAAEIAEERNVKG-- 635 (767)
T ss_pred CCCCHHHHHHHHHHhhcch------------hhcchhHHHHHHHHH----HhccccHHHHHHHHHHHHHHhhhhcccc--
Confidence 9999999999999988753 234555555554432 2335778888899999988876554421
Q ss_pred ChhhhhcccHHHHHHHHHHHH
Q 011578 458 DTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 458 ~~~~~~~i~~~d~~~al~~~~ 478 (482)
.......+++-|+.+|+..+.
T Consensus 636 k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 636 KLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred cccccceeehHHHHHHHHHHh
Confidence 223456789999999998764
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=105.64 Aligned_cols=240 Identities=17% Similarity=0.220 Sum_probs=132.6
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD- 285 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~- 285 (482)
.|.|.+.+|..+.-.+ . .................|+||.|.||||||.+.+.+++.... -+.+++..
T Consensus 25 ~i~g~~~iK~aill~L---~-~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr--------~v~~~g~~~ 92 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQL---F-GGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR--------SVYTSGKGS 92 (331)
T ss_dssp TTTT-HHHHHHHCCCC---T-T--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS--------EEEEECCGS
T ss_pred cCcCcHHHHHHHHHHH---H-hccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc--------eEEECCCCc
Confidence 5788888877765221 0 000000000000124568999999999999999988765432 22222211
Q ss_pred ----cccccc---ccchhhH-HHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE-----------
Q 011578 286 ----LVGEFV---GHTGPKT-RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV----------- 346 (482)
Q Consensus 286 ----~~~~~~---g~~~~~~-~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------- 346 (482)
+..... ...+..+ ...+-.|.+||++|||+|++.. .....|.+.|+.+.+
T Consensus 93 s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l 161 (331)
T PF00493_consen 93 SAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTL 161 (331)
T ss_dssp TCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEE
T ss_pred ccCCccceeccccccceeEEeCCchhcccCceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccc
Confidence 111100 0111122 2356778999999999999987 334889999987432
Q ss_pred ----EEEEecCchhHH--------HHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHHhcccccc-------------
Q 011578 347 ----VVIFAGYSEPMK--------RVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQTEDS------------- 400 (482)
Q Consensus 347 ----~vi~~~~~~~~~--------~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l~~~~~~~------------- 400 (482)
.|+++.++..-. .-+...++|++|||.++.+ ..++.+.-..|.+..+.......
T Consensus 162 ~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF00493_consen 162 NARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKP 241 (331)
T ss_dssp E---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-T
T ss_pred cchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCc
Confidence 555554433210 1122358999999988775 67776666666666665543221
Q ss_pred ---------ccc-cccccCcccHHHHHHHHHHHhhHhhc-------cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhh
Q 011578 401 ---------LLY-GFKLHSSCSMDAIAALIEKETTEKQR-------REMNGGLVDPMLVNARENLDLRLSFDCLDTDELR 463 (482)
Q Consensus 401 ---------~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~ 463 (482)
..| +..+.|.+++++...+...|...+.. .+...|.+..+++.|...+..|+. .
T Consensus 242 ~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr---------~ 312 (331)
T PF00493_consen 242 ISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLR---------D 312 (331)
T ss_dssp T-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTS---------S
T ss_pred cCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhcc---------C
Confidence 011 11467788888888887777633332 245679999999988888766665 4
Q ss_pred cccHHHHHHHHHHHH
Q 011578 464 TITLEDLEAGLKLLL 478 (482)
Q Consensus 464 ~i~~~d~~~al~~~~ 478 (482)
.|+.+|+..|+.-+.
T Consensus 313 ~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 313 EVTEEDVEEAIRLFE 327 (331)
T ss_dssp ECSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHH
Confidence 799999999987664
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=109.86 Aligned_cols=195 Identities=18% Similarity=0.186 Sum_probs=129.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccc---------hh-hHHHHHHhcCCcEEE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT---------GP-KTRRRIKEAEGGILF 311 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~-~~~~~~~~a~~~vl~ 311 (482)
...+|++.|++||+||+++++++..+.. ..||+.+..+.-....+|.. .. .-..++..|.+||||
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~-----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~ 98 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA-----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLV 98 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC-----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEE
Confidence 3468999999999999999999987753 24788777766555666652 11 123467788899999
Q ss_pred EecccccccCCCCCCChhHHHHHHHHHhhhcCCcE---------------EEEEecCchhHHHHHhcCccccCCCcceee
Q 011578 312 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFH 376 (482)
Q Consensus 312 iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~ 376 (482)
|||+..+.+ .+++.|++.|+.+.+ ++|++ .++........+++++||+..+.
T Consensus 99 lDe~n~~~~-----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--~~~~~~~~~L~~~lLDRf~l~v~ 165 (584)
T PRK13406 99 LAMAERLEP-----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--DEGAEEDERAPAALADRLAFHLD 165 (584)
T ss_pred ecCcccCCH-----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--CCChhcccCCCHHhHhheEEEEE
Confidence 999988887 777999999998654 34443 22221112337889999999999
Q ss_pred CCCCCHHHHH-------HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc-CcchhHHHHHHHHHHh
Q 011578 377 FNDFNSEELA-------KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM-NGGLVDPMLVNARENL 448 (482)
Q Consensus 377 ~~~~~~~~~~-------~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~a~~~~ 448 (482)
++.++..+.. +|....- .+ -...++.+.+..++.-... ... ..|.-..++.-|...+
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~----------rl-~~v~v~~~~l~~i~~~~~~----~gv~S~Ra~i~llraARa~A 230 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARA----------RL-PAVGPPPEAIAALCAAAAA----LGIASLRAPLLALRAARAAA 230 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHH----------HH-ccCCCCHHHHHHHHHHHHH----hCCCCcCHHHHHHHHHHHHH
Confidence 9998875542 1221110 01 1345677777776654331 111 3455556666665554
Q ss_pred hhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 449 DLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 449 ~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.-+....|+.+|+.+|+.-+-
T Consensus 231 ---------aL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 231 ---------ALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred ---------HHcCCCCCCHHHHHHHHHHHH
Confidence 223456899999999987664
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=102.95 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=87.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-C-----------------CCeEEeeccccc---------------
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-T-----------------DRVTEVQRTDLV--------------- 287 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-~-----------------~~~~~~~~~~~~--------------- 287 (482)
..+..+||+||+|+||+++|+.+|+.+....... . ..+..+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3566799999999999999999999987533211 1 112222211000
Q ss_pred ---c-------cccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEE
Q 011578 288 ---G-------EFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV 348 (482)
Q Consensus 288 ---~-------~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~v 348 (482)
+ +.+ .-..++++.+.. ...|++||++|.+.. .+.|.||..+|+ ..+++
T Consensus 99 ~~~~~k~~~~~~~I--~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEI--KIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEPPPGTVF 165 (342)
T ss_pred hccccccccccccc--CHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCcCcEE
Confidence 0 001 112344444322 237999999999987 455999999997 44444
Q ss_pred EEe-cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 349 IFA-GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 349 i~~-~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
|+. +.++.+ .|.+++|+ ..+.|++|+.++..+.+..
T Consensus 166 iL~t~~~~~L------LpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRL------LPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhC------cHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 444 333333 78899999 8999999999999988865
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=101.16 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=84.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC--------------CeEEe--ecccccccc--cccchhhHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD--------------RVTEV--QRTDLVGEF--VGHTGPKTRRRIK 303 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~--~g~~~~~~~~~~~ 303 (482)
-+..+||+||+|+||+++|.++|+.+........+ .+..+ .+.. .++- ..-.-..++++.+
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~-~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR-TGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc-ccccccccccHHHHHHHHH
Confidence 34459999999999999999999988653211110 11112 1110 0000 0001223444443
Q ss_pred hc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcE-EEEEecCchhHHHHHhcCccccCCCcc
Q 011578 304 EA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKV-VVIFAGYSEPMKRVIASNEGFCRRVTK 373 (482)
Q Consensus 304 ~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~-~vi~~~~~~~~~~~~~~~~~l~~R~~~ 373 (482)
.. ...|++||++|.+.. .+.|.||..||+ +.. +++.+..+..+ .|.+++|+ .
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~~~fiL~~~~~~~l------LpTIrSRC-q 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSPGRYLWLISAQPARL------PATIRSRC-Q 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCCCCeEEEEECChhhC------chHHHhhh-e
Confidence 21 237999999999987 445999999998 344 44444333333 68999999 9
Q ss_pred eeeCCCCCHHHHHHHHHH
Q 011578 374 FFHFNDFNSEELAKILHI 391 (482)
Q Consensus 374 ~i~~~~~~~~~~~~il~~ 391 (482)
.+.|++|+.++....+..
T Consensus 166 ~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EeeCCCcCHHHHHHHHHH
Confidence 999999999988877764
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=92.13 Aligned_cols=77 Identities=29% Similarity=0.398 Sum_probs=52.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--------------ccccchhhHHHHHHhcCC-
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------------FVGHTGPKTRRRIKEAEG- 307 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~a~~- 307 (482)
..+++|+||||||||++++.+|..+...+ ..++.+++...... .........+..+..++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999999776532 24666666543221 112233444555555543
Q ss_pred --cEEEEecccccccCCC
Q 011578 308 --GILFVDEAYRLIPMQK 323 (482)
Q Consensus 308 --~vl~iDE~d~l~~~~~ 323 (482)
.||||||++.+.....
T Consensus 78 ~~~viiiDei~~~~~~~~ 95 (148)
T smart00382 78 KPDVLILDEITSLLDAEQ 95 (148)
T ss_pred CCCEEEEECCcccCCHHH
Confidence 9999999999987433
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-09 Score=94.99 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=64.9
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCc--------hhHHHHHhcCccccCCCcceeeC
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYS--------EPMKRVIASNEGFCRRVTKFFHF 377 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~--------~~~~~~~~~~~~l~~R~~~~i~~ 377 (482)
+|||||||++.|.- +...-|-+.+++. ..+||+|++. ..+....-..+.+++|+ .+|+.
T Consensus 297 PGVLFIDEVhMLDi-----------EcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt 364 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI-----------ECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRT 364 (456)
T ss_pred CcceEeeehhhhhh-----------HHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEee
Confidence 49999999999865 4556777778772 3345555431 11111111247788998 88999
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 378 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 378 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
-+++.+++++|++...+.+. ..++++++..+..-.
T Consensus 365 ~~y~~~e~r~Ii~~Ra~~E~-----------l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 365 LPYDEEEIRQIIKIRAQVEG-----------LQVEEEALDLLAEIG 399 (456)
T ss_pred ccCCHHHHHHHHHHHHhhhc-----------ceecHHHHHHHHhhc
Confidence 99999999999999877653 345778888887743
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=101.27 Aligned_cols=129 Identities=12% Similarity=0.176 Sum_probs=86.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC-----------------eEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
-+..+||+||+|+||+++|+.+|+.+.........+ +..+.+. .++.+| ...+|++.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I~--id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDIG--VDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCCC--HHHHHHHHHH
Confidence 355688999999999999999999886532211111 2222211 011122 2344544332
Q ss_pred c-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecC-chhHHHHHhcCccccCCCcce
Q 011578 305 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 305 a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~-~~~~~~~~~~~~~l~~R~~~~ 374 (482)
. ...|++||++|++.. .+.|.||..+|+ ..+++|++++ +..+ .|.+++|+ ..
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEPp~~~~fiL~t~~~~~l------lpTI~SRC-~~ 160 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEPRPNTYFLLQADLSAAL------LPTIYSRC-QT 160 (325)
T ss_pred HhhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChHhC------chHHHhhc-eE
Confidence 1 237999999999987 445999999998 4455555433 3333 78899999 99
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 011578 375 FHFNDFNSEELAKILHIK 392 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~ 392 (482)
+.|++|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999999999998888764
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=101.49 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=84.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
.+..+||+||+|+||+++|+++|+.+........ ..+..+.+..- +..+ +...++++.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I--~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSL--GVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cccC--CHHHHHHHHHH
Confidence 4556889999999999999999998864221111 11222221100 0111 12234444432
Q ss_pred -------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcce
Q 011578 305 -------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 305 -------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
....|++||++|++.. .+.|.||..||+ ...++|+ |.++..+ .|.++||+ ..
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTIrSRC-q~ 161 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEPPENTWFFLACREPARL------LATLRSRC-RL 161 (334)
T ss_pred HhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-cc
Confidence 2337999999999998 445999999998 3444444 4333333 68899999 68
Q ss_pred eeCCCCCHHHHHHHHHH
Q 011578 375 FHFNDFNSEELAKILHI 391 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~ 391 (482)
+.|++|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 99999999988887754
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=102.74 Aligned_cols=136 Identities=18% Similarity=0.325 Sum_probs=95.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch----hhHHHHHHhcCC---cEEEEe
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEAEG---GILFVD 313 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a~~---~vl~iD 313 (482)
.+..++||.||||+|||+||-.+|..... ||+.+-.++ +.+|-++ .-+.++|+.|.. +||++|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~F-------PFvKiiSpe---~miG~sEsaKc~~i~k~F~DAYkS~lsiivvD 605 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDF-------PFVKIISPE---DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVD 605 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCC-------CeEEEeChH---HccCccHHHHHHHHHHHHHHhhcCcceEEEEc
Confidence 35567999999999999999999987765 888765543 2344433 336788998865 899999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCchh-HHHHHhcCccccCCCcceeeCCCCCH-HHHHH
Q 011578 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP-MKRVIASNEGFCRRVTKFFHFNDFNS-EELAK 387 (482)
Q Consensus 314 E~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~-~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~ 387 (482)
++++|..--. -+..++.-++.+|+-.+.. |+-.+|++|++.. +.. .-.+...|+..+++|..+. ++..+
T Consensus 606 diErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 606 DIERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred chhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecCccCchHHHHH
Confidence 9999974221 1345556677777777764 4444444444433 321 3456778999999999996 78888
Q ss_pred HHHH
Q 011578 388 ILHI 391 (482)
Q Consensus 388 il~~ 391 (482)
++..
T Consensus 681 vl~~ 684 (744)
T KOG0741|consen 681 VLEE 684 (744)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-09 Score=99.65 Aligned_cols=129 Identities=9% Similarity=0.143 Sum_probs=85.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC----------------CCCeEEeecccccccccccchhhHHHHHHh-
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE- 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 304 (482)
-+..+||+||.|+||+++|+.+|+.+....... ...+..+.+.. .++.++ ...++++.+.
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I~--vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSIT--VEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcCC--HHHHHHHHHHH
Confidence 455699999999999999999999886432110 01122222211 011111 1233443322
Q ss_pred --c----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCccee
Q 011578 305 --A----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 305 --a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
. ...|++||++|.+.. .+.|.||..+|+ ...++|+ |++++.+ .|.+++|+ ..+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTI~SRC-q~~ 162 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPAPNCLFLLVTHNQKRL------LPTIVSRC-QQW 162 (319)
T ss_pred hhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-eeE
Confidence 1 237999999999987 444999999998 3444444 4334433 68899999 899
Q ss_pred eCCCCCHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHI 391 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~ 391 (482)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999998887754
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-09 Score=101.84 Aligned_cols=133 Identities=19% Similarity=0.210 Sum_probs=84.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC------------------CCCeEEeecccc---cccc-cccchhhHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP------------------TDRVTEVQRTDL---VGEF-VGHTGPKTR 299 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~------------------~~~~~~~~~~~~---~~~~-~g~~~~~~~ 299 (482)
-+..+||+||+|+|||++|+.+|+.+....... ...|+.+.+..- .++. -.-+-..++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 455699999999999999999999886422111 123444443210 0100 000123345
Q ss_pred HHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--cEEEEEecCchhHHHHHhcCccccCC
Q 011578 300 RRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAGYSEPMKRVIASNEGFCRR 370 (482)
Q Consensus 300 ~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~vi~~~~~~~~~~~~~~~~~l~~R 370 (482)
++.+.+ ...|++||+++.+.+..+ +.|++.+++. ..++|++|+... .+ .|.+.+|
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~-----------naLLk~LEep~~~~~~Ilvth~~~--~l---l~ti~SR 163 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAA-----------NSLLKVLEEPPPQVVFLLVSHAAD--KV---LPTIKSR 163 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHH-----------HHHHHHHHhCcCCCEEEEEeCChH--hC---hHHHHHH
Confidence 554332 337999999999988444 8888888762 344444433322 22 6778889
Q ss_pred CcceeeCCCCCHHHHHHHHHH
Q 011578 371 VTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 371 ~~~~i~~~~~~~~~~~~il~~ 391 (482)
+ ..+.|++|+.++..+.+..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 8 9999999999998877754
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=97.57 Aligned_cols=246 Identities=18% Similarity=0.248 Sum_probs=143.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE----
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT---- 279 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~---- 279 (482)
.+..|.|.+.+|.-|.-.+ ..-.++..+.........++++.|.||||||-+-++.+..+.. ++-.++...
T Consensus 343 l~PsIyGhe~VK~GilL~L----fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR-~vYtsGkaSSaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL----FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR-SVYTSGKASSAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH----hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc-ceEecCccccccc
Confidence 3456889999888776321 1111222223334455678999999999999999999987753 111111111
Q ss_pred ---EeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE----------
Q 011578 280 ---EVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------- 346 (482)
Q Consensus 280 ---~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------- 346 (482)
.+....-.+.|.-+. .++..|..||--|||+|++.-+.| -++.++|+...+
T Consensus 418 LTaaVvkD~esgdf~iEA-----GALmLADnGICCIDEFDKMd~~dq-----------vAihEAMEQQtISIaKAGv~aT 481 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEA-----GALMLADNGICCIDEFDKMDVKDQ-----------VAIHEAMEQQTISIAKAGVVAT 481 (764)
T ss_pred ceEEEEecCCCCceeeec-----CcEEEccCceEEechhcccChHhH-----------HHHHHHHHhheehheecceEEe
Confidence 111111112222111 234456789999999999987666 678888876332
Q ss_pred -----EEEEecCc--------hhHHHHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhccccccc-----------
Q 011578 347 -----VVIFAGYS--------EPMKRVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTEDSL----------- 401 (482)
Q Consensus 347 -----~vi~~~~~--------~~~~~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~~~~----------- 401 (482)
-|++|++| ..+..-+...+++.+|||..|- ++.+++..=..|.++.+..+.....
T Consensus 482 LnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 482 LNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred ecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 23333221 1122233445899999987654 5888876666666666554321100
Q ss_pred ------cccccccCcccHHHHHHHHHHHhhHhhcc---------ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhccc
Q 011578 402 ------LYGFKLHSSCSMDAIAALIEKETTEKQRR---------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 466 (482)
Q Consensus 402 ------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~ 466 (482)
.|.-.+.|.++.++-+.+.+.|..-+.+. +...|+|..++..+...+ |+ +-...+|
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~A--r~-------~~~devt 632 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARA--RV-------ECRDEVT 632 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHH--hh-------hhhhhcc
Confidence 01114455666666666666665444333 334588888877654443 22 2234689
Q ss_pred HHHHHHHHHHHHh
Q 011578 467 LEDLEAGLKLLLR 479 (482)
Q Consensus 467 ~~d~~~al~~~~~ 479 (482)
.+|.++|+.-++.
T Consensus 633 ~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 633 KEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887764
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-08 Score=92.96 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=74.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc----ccchhhHHHHHHhc-CCcEEEEecccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV----GHTGPKTRRRIKEA-EGGILFVDEAYR 317 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~a-~~~vl~iDE~d~ 317 (482)
..+++|+||||||||.||.++++.+...+ .+++.++.+++...+. +.......++++.. ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~----~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG----VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 35799999999999999999999986533 3567777766554432 11111122334332 347999999964
Q ss_pred cccCCCCCCChhHHHHHHHHHhhhc----CCcEEEEEecCchhHHHHHhcCccccCCC---cceeeCCCCCHHHHHHHHH
Q 011578 318 LIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILH 390 (482)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~ll~~l~----~~~~~vi~~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~ 390 (482)
-.. ++... ..|...++ .+..+||.++.+ +.+.....+..+.+|+ ...|.|+.+|. |.++.+
T Consensus 190 e~~------t~~~~---~~l~~iin~r~~~~~~~IiTsN~~-~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 190 ERD------TEWAR---EKVYNIIDSRYRKGLPTIVTTNLS-LEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred CCC------CHHHH---HHHHHHHHHHHHCCCCEEEECCCC-HHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHH
Confidence 321 22222 33344433 345555555433 2221111256667775 34567776663 444443
Q ss_pred H
Q 011578 391 I 391 (482)
Q Consensus 391 ~ 391 (482)
.
T Consensus 258 e 258 (268)
T PRK08116 258 E 258 (268)
T ss_pred H
Confidence 3
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=63.61 Aligned_cols=28 Identities=57% Similarity=0.829 Sum_probs=18.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCcc
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIE 112 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 112 (482)
|+||||+||..|+.+++++|+++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 5666666666666666666666666665
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-10 Score=112.09 Aligned_cols=98 Identities=26% Similarity=0.390 Sum_probs=73.6
Q ss_pred CCHHHHHHHHhh-CCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHHHHHHHcCCHHHH
Q 011578 24 GDLLAFQRLLRE-NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAA 101 (482)
Q Consensus 24 g~~~~v~~ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v 101 (482)
+....++-++.+ ++...|..|.. |+|+||+|+..|..++++.||+ .|++++.+| ..|+||||.|...|+++|+
T Consensus 28 s~~Nqlk~F~~k~c~n~anikD~~-GR~alH~~~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idca 102 (1267)
T KOG0783|consen 28 SEPNQLKGFSEKSCQNLANIKDRY-GRTALHIAVSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDCA 102 (1267)
T ss_pred CChhHHHHHHHHhhhhhhhHHHhh-ccceeeeeeccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHHH
Confidence 333345555543 34445777765 8888888888888888888888 477788777 4688888888888888888
Q ss_pred HHHHhCCCCccccccCCCcceeeeh
Q 011578 102 KLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 102 ~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
-+|+.+|+....+|+.|.+||.+-+
T Consensus 103 ~lLL~~g~SL~i~Dkeglsplq~~~ 127 (1267)
T KOG0783|consen 103 SLLLSKGRSLRIKDKEGLSPLQFLS 127 (1267)
T ss_pred HHHHhcCCceEEecccCCCHHHHHh
Confidence 8888888888888888888887666
|
|
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=89.24 Aligned_cols=123 Identities=24% Similarity=0.412 Sum_probs=78.6
Q ss_pred HHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 198 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 198 ~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
.+.++..++ .+.||+-+++.+...+.... ..+ ....|..+-|+|+|||||+.+++.||+.+...|..+.
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~--------~n~-~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~- 142 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHW--------ANP-NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP- 142 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHh--------cCC-CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch-
Confidence 445555555 48999999998887655442 111 1345566779999999999999999999987654432
Q ss_pred CeEE--eecccc-----cccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 277 RVTE--VQRTDL-----VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 277 ~~~~--~~~~~~-----~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
++. +...++ +..|--+-...+++.......+++++||+|+|.+ .++++|-..+|
T Consensus 143 -~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLd 203 (344)
T KOG2170|consen 143 -FVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLD 203 (344)
T ss_pred -hHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhc
Confidence 211 111111 1222222333445555555679999999999987 56666666666
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.1e-08 Score=92.25 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=103.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.+.|.+.-...+++|+... +....+.++.+.|.||||||..-..+-..+...+.. ...+.+++.++
T Consensus 151 ~l~gRe~e~~~v~~F~~~h------------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~--~~~v~inc~sl 216 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLH------------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS--PVTVYINCTSL 216 (529)
T ss_pred CccchHHHHHHHHHHHHhh------------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc--ceeEEEeeccc
Confidence 4677777777777775433 334577889999999999999888666555432221 13467777653
Q ss_pred cc----------cc----ccc-chhhHHHHHHh----cC-CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc----
Q 011578 287 VG----------EF----VGH-TGPKTRRRIKE----AE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---- 342 (482)
Q Consensus 287 ~~----------~~----~g~-~~~~~~~~~~~----a~-~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~---- 342 (482)
.. .+ +|. ++......|++ .. --|+++||+|.|..+.+ ..|++.++
T Consensus 217 ~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lFewp~l 285 (529)
T KOG2227|consen 217 TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLFEWPKL 285 (529)
T ss_pred cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeeehhcccC
Confidence 21 11 222 22222344433 22 36888999999997666 34444443
Q ss_pred -CCcEEEEE-ecCchhHHHHHhcCccccCCC---cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 343 -GGKVVVIF-AGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 343 -~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
..++++|+ |+.-+..+.+ -|.|..|. +..+.|++|+.+++.+|+...+....
T Consensus 286 p~sr~iLiGiANslDlTdR~---LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRF---LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred CcceeeeeeehhhhhHHHHH---hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 24455554 5444444544 34454433 78999999999999999999998865
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-08 Score=99.08 Aligned_cols=241 Identities=20% Similarity=0.242 Sum_probs=125.3
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe-------E
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV-------T 279 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~-------~ 279 (482)
+|.|++++|+-+.-.+- .-.+++....-......++||+|.||||||-+-+.+++.+.. |...++.= .
T Consensus 430 sIye~edvKkglLLqLf----GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSGkGsSavGLTa 504 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF----GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSGKGSSAVGLTA 504 (804)
T ss_pred hhhcccchhhhHHHHHh----cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc-ceeecCCccchhccee
Confidence 46777777776653210 001111111101223468999999999999999999997753 22111110 0
Q ss_pred EeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC---------------
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------------- 344 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--------------- 344 (482)
.+....-..+++=+++ ++-.+.+||--|||+|++..+.+ +.|.+.|+..
T Consensus 505 yVtrd~dtkqlVLesG-----ALVLSD~GiCCIDEFDKM~dStr-----------SvLhEvMEQQTvSIAKAGII~sLNA 568 (804)
T KOG0478|consen 505 YVTKDPDTRQLVLESG-----ALVLSDNGICCIDEFDKMSDSTR-----------SVLHEVMEQQTLSIAKAGIIASLNA 568 (804)
T ss_pred eEEecCccceeeeecC-----cEEEcCCceEEchhhhhhhHHHH-----------HHHHHHHHHhhhhHhhcceeeeccc
Confidence 0000001111221121 22345679999999999976544 5566666541
Q ss_pred -cEEEEEec------C-chhHHHHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhcccc----------------c
Q 011578 345 -KVVVIFAG------Y-SEPMKRVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTE----------------D 399 (482)
Q Consensus 345 -~~~vi~~~------~-~~~~~~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~----------------~ 399 (482)
.-++.+|+ + ...+.+-+...|.|++|||.++- ++.+|...=++|..+...-..+ .
T Consensus 569 R~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~ 648 (804)
T KOG0478|consen 569 RCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRD 648 (804)
T ss_pred cceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHH
Confidence 22444444 1 11223344456999999987665 5777764222222222111110 0
Q ss_pred cccccc-cccCcccHHHHHHHHHHHhhHhhccccCc------chhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHH
Q 011578 400 SLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNG------GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472 (482)
Q Consensus 400 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 472 (482)
...|.. .+.+.+++++...+.+.+..-+....+++ |++..++..+...+..|.. ..+...|+++
T Consensus 649 yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s---------~~ve~~dV~e 719 (804)
T KOG0478|consen 649 YIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLS---------NRVEEIDVEE 719 (804)
T ss_pred HHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcc---------cccchhhHHH
Confidence 001122 34677788888888888775544433333 4555555444444333332 3566677777
Q ss_pred HHHHH
Q 011578 473 GLKLL 477 (482)
Q Consensus 473 al~~~ 477 (482)
|+.-+
T Consensus 720 A~~l~ 724 (804)
T KOG0478|consen 720 AVRLL 724 (804)
T ss_pred HHHHH
Confidence 66543
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.7e-09 Score=63.56 Aligned_cols=31 Identities=55% Similarity=0.811 Sum_probs=20.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccc
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d 115 (482)
|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 5666666666666666666666666666655
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-07 Score=84.43 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=77.0
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchh-----HH--HHHhcCccccCCCcceeeCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-----MK--RVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~-----~~--~~~~~~~~l~~R~~~~i~~~~ 379 (482)
|||||||++.|.- +-.+-|-.++++ -..+++++|+.-- .+ ...-.+-.|++|+ .+|...+
T Consensus 290 GVLFIDEvHMLDI-----------EcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~t~p 357 (454)
T KOG2680|consen 290 GVLFIDEVHMLDI-----------ECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIISTQP 357 (454)
T ss_pred ceEEEeeehhhhh-----------HHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heeeccc
Confidence 8999999988865 222444455554 2334444442110 00 0000123467787 8899999
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCCh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT 459 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~ 459 (482)
++.++..+||+..+.++. ...+++++..++.-.. ....|...+++..|......|=
T Consensus 358 y~~~d~~~IL~iRc~EEd-----------v~m~~~A~d~Lt~i~~------~tsLRYai~Lit~a~~~~~krk------- 413 (454)
T KOG2680|consen 358 YTEEDIKKILRIRCQEED-----------VEMNPDALDLLTKIGE------ATSLRYAIHLITAASLVCLKRK------- 413 (454)
T ss_pred CcHHHHHHHHHhhhhhhc-----------cccCHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHhc-------
Confidence 999999999999888753 4567788888877543 2233444555555544433331
Q ss_pred hhhhcccHHHHHHHHHH
Q 011578 460 DELRTITLEDLEAGLKL 476 (482)
Q Consensus 460 ~~~~~i~~~d~~~al~~ 476 (482)
...++.+|+..++.-
T Consensus 414 --~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 414 --GKVVEVDDIERVYRL 428 (454)
T ss_pred --CceeehhHHHHHHHH
Confidence 134566666666543
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-09 Score=99.77 Aligned_cols=119 Identities=29% Similarity=0.302 Sum_probs=95.2
Q ss_pred hHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcC
Q 011578 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (482)
Q Consensus 17 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g 96 (482)
+..|+..+++-.+++.-..+++.+ ..+.+ ..|.||||+..|+-++|+|+|+++. ...++..|..|.|+||-|+..+
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll-~~~~~-~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLL-IQGPD-HCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQR 945 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceE-eeCcc-hhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhc
Confidence 677888888777777665555544 44444 7899999999999999999998753 4556777788999999999888
Q ss_pred CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhh
Q 011578 97 CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (482)
Q Consensus 97 ~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~ 143 (482)
+..++++|++.|+.+...|..|.||-..|- ..|+.+...||-.
T Consensus 946 ~r~vc~~lvdagasl~ktd~kg~tp~eraq----qa~d~dlaayle~ 988 (1004)
T KOG0782|consen 946 NRAVCQLLVDAGASLRKTDSKGKTPQERAQ----QAGDPDLAAYLES 988 (1004)
T ss_pred chHHHHHHHhcchhheecccCCCChHHHHH----hcCCchHHHHHhh
Confidence 888999999999998888999999988888 7888888888753
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.9e-09 Score=105.98 Aligned_cols=84 Identities=30% Similarity=0.424 Sum_probs=77.7
Q ss_pred ccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCC
Q 011578 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155 (482)
Q Consensus 77 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g 155 (482)
-.|.+|..|+|+||+|+..+...++++|+++|+|++.+|. .|+||||.|. ..|+.+++.+||.+|+...++|++|
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRai----yyG~idca~lLL~~g~SL~i~Dkeg 119 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAI----YYGNIDCASLLLSKGRSLRIKDKEG 119 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhh----hhchHHHHHHHHhcCCceEEecccC
Confidence 3788999999999999999999999999999999999986 5999999999 6789999999999999999999999
Q ss_pred CChhhhhhc
Q 011578 156 KTPLDHLSN 164 (482)
Q Consensus 156 ~tpl~~~a~ 164 (482)
.+||...+.
T Consensus 120 lsplq~~~r 128 (1267)
T KOG0783|consen 120 LSPLQFLSR 128 (1267)
T ss_pred CCHHHHHhh
Confidence 999976665
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-08 Score=80.83 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=72.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---CCcEEEEeccccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIP 320 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~ 320 (482)
..++++||.|+|||++++.+++.+. ....++.++..+.......... +.+.+.+. ...+||||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc
Confidence 4588999999999999999998775 2225566666554322111000 22333222 458999999988742
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHH
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE 384 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~ 384 (482)
....+-...+.+ .+.++++++......- .....+.+|. ..+++.+++-.|
T Consensus 76 ------------~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ------------WEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ------------HHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeE-EEEEECCCCHHH
Confidence 123333333443 5666666655544321 2356778887 678888888765
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-09 Score=98.16 Aligned_cols=91 Identities=24% Similarity=0.237 Sum_probs=72.2
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~ 126 (482)
+.-++++|+..|.+..++-+.- .+.+++.+|.+.+|+||.||..|+++++++|++ .+.+++.+|.+|+|||.-|.
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~ 581 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK 581 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence 6677888888888877776655 477888888888888888888888888888887 46888888888888888888
Q ss_pred hhccCCChHHHHHHHhhCCC
Q 011578 127 WYSIRSEDYATVKTLLEYNA 146 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~ga 146 (482)
..+|.+++++|-++-.
T Consensus 582 ----~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 582 ----HFKHKEVVKLLEEAQY 597 (622)
T ss_pred ----hcCcHHHHHHHHHHhc
Confidence 7778888888876544
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.6e-08 Score=87.62 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=61.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc---cchhhHHHHHHhc-CCcEEEEecccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
.+++|+||||||||.++.++|+.+...+. .++.++.+++...+.+ .......++++.. ...+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~----~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGK----SVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCC----eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 48999999999999999999999876442 5566666666543221 1111122334332 45799999998764
Q ss_pred cCCCCCCChhHHHHHHHHHhhh-cCCcEEEEEecC
Q 011578 320 PMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGY 353 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l-~~~~~~vi~~~~ 353 (482)
. ++....++..++..- +....++|.++.
T Consensus 176 ~------s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 176 E------SRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred C------CHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 2 233344445444432 234555555543
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-08 Score=93.97 Aligned_cols=109 Identities=28% Similarity=0.359 Sum_probs=89.1
Q ss_pred cCcCCCChH------HHHHHHcCCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 80 AQNMYGETP------LHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 80 ~~~~~g~tp------Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
.+|.+|.|. ||..++.|+.++.--|+..||++|.-+. .|.||||.|+ +.|...-+++|+-+|||++..|
T Consensus 122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAA----k~Gq~~Q~ElL~vYGAD~~a~d 197 (669)
T KOG0818|consen 122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAA----KAGQILQAELLAVYGADPGAQD 197 (669)
T ss_pred CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHH----hccchhhhhHHhhccCCCCCCC
Confidence 456566554 8999999999999999999999998664 6999999999 8999999999999999999999
Q ss_pred CCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhHhhhhh
Q 011578 153 NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSE 193 (482)
Q Consensus 153 ~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~~~~~~ 193 (482)
.+|.||+ .+|..+|+.++.+-|.+...+...+-.+..|..
T Consensus 198 ~~GmtP~-~~AR~~gH~~laeRl~e~~y~vtDR~~f~lcgr 237 (669)
T KOG0818|consen 198 SSGMTPV-DYARQGGHHELAERLVEIQYELTDRLAFYLCGR 237 (669)
T ss_pred CCCCcHH-HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999 667777788877777776666665655555533
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.7e-07 Score=81.68 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=82.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe-ecc------cc-------------ccc-c----------
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV-QRT------DL-------------VGE-F---------- 290 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~------~~-------------~~~-~---------- 290 (482)
+...++++||.|+|||++.+.+.+.+...+. ...++.. ... .. ... .
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 4568999999999999999999997732111 0000000 000 00 000 0
Q ss_pred --cccchhhHHHHHHh----cCCcEEEEecccccc-cCCCCCCChhHHHHHHHHHhhhc----CCcEEEEEecCch-hHH
Q 011578 291 --VGHTGPKTRRRIKE----AEGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSE-PMK 358 (482)
Q Consensus 291 --~g~~~~~~~~~~~~----a~~~vl~iDE~d~l~-~~~~~~~~~~~~~~~~~ll~~l~----~~~~~vi~~~~~~-~~~ 358 (482)
.......+..+++. ....||+|||++.+. .... .. ..+..|...++ ...+.+|++++.. .+.
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DK---DFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---TH---HHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hH---HHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 00112223333332 234899999999998 3221 11 33333444333 3455455554443 333
Q ss_pred HHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 359 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 359 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
.+....+++..|+.. +.+++++.++..++++..+.+. . .+ ..+++.+..+..-+
T Consensus 171 ~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~-------~~--~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 171 EFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I-------KL--PFSDEDIEEIYSLT 224 (234)
T ss_dssp HTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC----------------HHHHHHHHHHH
T ss_pred HhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h-------cc--cCCHHHHHHHHHHh
Confidence 444556778889966 9999999999999999987753 1 11 23667777766654
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-08 Score=97.07 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=76.6
Q ss_pred HHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhcc
Q 011578 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (482)
Q Consensus 51 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~ 130 (482)
-|.-|+...++..+-+||.+|.....+-...+.+|+|+||+||..|++.+.++|+=+|+|+..+|.+|+|+|.||-
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar---- 702 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYAR---- 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHh----
Confidence 3556677777788888888776555555556677889999999999999999999999999999999999999888
Q ss_pred CCChHHHHHHHhhCCCCc
Q 011578 131 RSEDYATVKTLLEYNADC 148 (482)
Q Consensus 131 ~~~~~~~v~~Ll~~gad~ 148 (482)
+.|..+++..|+++|+..
T Consensus 703 ~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCPD 720 (749)
T ss_pred hcccHHHHHHHHHcCCCc
Confidence 888899999999988753
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=87.60 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=47.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc--chhhHHHHHHhc-CCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH--TGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
..+++|+||||||||.||.++++.+...+. .++.++..++...+-.. ......+.++.. ...+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~----~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR----SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 358999999999999999999999975443 44556666655432110 011122344433 44899999997653
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.5e-08 Score=89.33 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=49.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc-cchhhHHHHHHhc-CCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKEA-EGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~a-~~~vl~iDE~d~l~~ 320 (482)
..+++|+||||||||.+|.++++.+...|. .++.++..++...+.. .......+.++.. ...+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGW----RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCC----ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC
Confidence 457999999999999999999998865443 4555666666554311 1112233344432 447999999987754
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=88.31 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------CCCCeEEeecccccccccccchhhHHHHHHh-------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------A 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a 305 (482)
-+..+||+||+|+||+++|.++|+.+...... ....+..+.+.. .++.+ +-..++++.+. +
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccCC
Confidence 45568899999999999999999988642100 011122221110 00111 12233444332 2
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCCCC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFN 381 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 381 (482)
...|++||++|.+... +.|.||..+|+ ..+++|+ +++++.+ .|.+++|+ ..+.|+++.
T Consensus 95 ~~kv~ii~~ad~mt~~-----------AaNaLLK~LEEPp~~~~fiL~~~~~~~l------l~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 95 PYKIYIIHEADRMTLD-----------AISAFLKVLEDPPQHGVIILTSAKPQRL------PPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred CceEEEEechhhcCHH-----------HHHHHHHHhhcCCCCeEEEEEeCChhhC------cHHHHhcc-eEEEccchh
Confidence 2379999999999984 44999999997 3444444 4333433 68899999 888888654
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=96.40 Aligned_cols=86 Identities=23% Similarity=0.371 Sum_probs=43.4
Q ss_pred HhHHHHHcCCHHHHHHHHhh-CCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 16 TIHGCAQSGDLLAFQRLLRE-NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 16 ~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
|+|+++...+.+.+...+.. -...++..|.. |.||||+|+..|+...++.|+. .++++..+|+.|++|||-|+.
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~-g~TpLhlAV~Lg~~~~a~~Ll~----a~Adv~~kN~~gWs~L~EAv~ 97 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP-GRTPLHLAVRLGHVEAARILLS----AGADVSIKNNEGWSPLHEAVS 97 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccccCC-CCccHHHHHHhcCHHHHHHHHh----cCCCccccccccccHHHHHHH
Confidence 35555555555444443322 22333444444 5555555555555555555555 345555555555555555555
Q ss_pred cCCHHHHHHHHh
Q 011578 95 NGCNEAAKLLLA 106 (482)
Q Consensus 95 ~g~~~~v~~Ll~ 106 (482)
.|+..++..++.
T Consensus 98 ~g~~q~i~~vlr 109 (560)
T KOG0522|consen 98 TGNEQIITEVLR 109 (560)
T ss_pred cCCHHHHHHHHH
Confidence 555554444433
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-08 Score=93.62 Aligned_cols=95 Identities=26% Similarity=0.224 Sum_probs=85.5
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCCCCCChhh
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLD 160 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~ 160 (482)
...+..++++|++.|.+..++-+.-.|.|++.+|.+.+|+||.|+ ..|+.+++++|++. +.|++.+|..|+|||
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAA----aEG~v~v~kfl~~~~kv~~~~kDRw~rtPl- 577 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAA----AEGHVEVVKFLLNACKVDPDPKDRWGRTPL- 577 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeec----ccCceeHHHHHHHHHcCCCChhhccCCCcc-
Confidence 456678899999999999999999999999999999999999999 99999999999965 999999999999999
Q ss_pred hhhcCCCChHHHHHHHhhhHH
Q 011578 161 HLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~ 181 (482)
--|..-++.+++++|.++...
T Consensus 578 DdA~~F~h~~v~k~L~~~~~~ 598 (622)
T KOG0506|consen 578 DDAKHFKHKEVVKLLEEAQYP 598 (622)
T ss_pred hHhHhcCcHHHHHHHHHHhcc
Confidence 556667888999999876543
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=91.35 Aligned_cols=86 Identities=31% Similarity=0.334 Sum_probs=59.3
Q ss_pred HHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc
Q 011578 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (482)
Q Consensus 51 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~ 129 (482)
-||..++.|+.+..--||. .|+++|..+ ..|.||||.|++.|+..-+++|+-+|||+++.|.+|+||+.+|-
T Consensus 136 QLhasvRt~nlet~LRll~----lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR--- 208 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS----LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYAR--- 208 (669)
T ss_pred HHHHHhhcccHHHHHHHHH----cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHH---
Confidence 4777777777665555555 456666555 45777777777777777777777777777777777777777776
Q ss_pred cCCChHHHHHHHhhC
Q 011578 130 IRSEDYATVKTLLEY 144 (482)
Q Consensus 130 ~~~~~~~~v~~Ll~~ 144 (482)
..||.++.+-|++.
T Consensus 209 -~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 209 -QGGHHELAERLVEI 222 (669)
T ss_pred -hcCchHHHHHHHHH
Confidence 66776666666553
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-08 Score=58.67 Aligned_cols=29 Identities=41% Similarity=0.590 Sum_probs=25.1
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccc
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (482)
+|+||||+||..|+.++|++|+++ |+++|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~----gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEH----GADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHc----CCCCC
Confidence 389999999999999999999994 56665
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.4e-07 Score=96.66 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=112.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEEeecccc--cccccccchhhHHHHHHhc----CCcEEEEec
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDL--VGEFVGHTGPKTRRRIKEA----EGGILFVDE 314 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~a----~~~vl~iDE 314 (482)
.+-+|.|.||+|||.++.-+++.+..-.+ .....++.++-..+ ..++-|+.+.+++++.+++ .+.||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 67899999999999999999998864222 22345555555433 3447788888888888753 346999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
++.+...... .....+.+.|-..+..+.+.+|+|||.+.+...+..+|++.+|| ..+.++.|+.++...|++..
T Consensus 289 lh~lvg~g~~---~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 289 LHWLVGSGSN---YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGL 362 (898)
T ss_pred eeeeecCCCc---chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhh
Confidence 9999875543 22557778888888888899999999888889999999999999 77778999988866777653
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-07 Score=77.39 Aligned_cols=146 Identities=14% Similarity=0.215 Sum_probs=79.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCC--CCeEEeeccccccc--------c----cccchh----hHHHHHHhcC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPT--DRVTEVQRTDLVGE--------F----VGHTGP----KTRRRIKEAE 306 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~--~~~~~~~~~~~~~~--------~----~g~~~~----~~~~~~~~a~ 306 (482)
-++++|+||+|||++++.++..+........ .-++.+...+.... . ...... ..........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999998876443221 11222222221110 0 111111 1122334455
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
..+|+||-+|.+....+..........+..++..--...+.++.++.+.....+... .... ..+.+++++.+++.
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~----~~~~-~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRR----LKQA-QILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHh----cCCC-cEEEECCCCHHHHH
Confidence 689999999999874432111112233444444311123444444445444322111 1111 57899999999999
Q ss_pred HHHHHHHhc
Q 011578 387 KILHIKMNN 395 (482)
Q Consensus 387 ~il~~~l~~ 395 (482)
++++.+++.
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999998764
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=87.47 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=48.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc---cchhhHHHHHHhc-CCcEEEEecccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
.+++|+||||||||.||.++|+++...+. .++.++..++...+.. .........++.. .--+|+||++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~----~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK----SVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 68999999999999999999999875442 5666666666544311 1111111123333 33799999997764
Q ss_pred c
Q 011578 320 P 320 (482)
Q Consensus 320 ~ 320 (482)
.
T Consensus 260 ~ 260 (329)
T PRK06835 260 I 260 (329)
T ss_pred C
Confidence 3
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-08 Score=59.03 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=29.1
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcC
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (482)
+|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK----HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH----TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH----CcCCCCCCCC
Confidence 38999999999999999999999 5788887763
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=87.94 Aligned_cols=75 Identities=28% Similarity=0.337 Sum_probs=47.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc-cchhhHHHHHHh-cCCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE-AEGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-a~~~vl~iDE~d~l~ 319 (482)
...+++|+||||||||.+|.+|+.++...|. .+...+.+++...... .......+.+.. ....+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~----~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH----RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCC----chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 4568999999999999999999998865443 2333444444333211 011122233333 345799999998875
Q ss_pred c
Q 011578 320 P 320 (482)
Q Consensus 320 ~ 320 (482)
.
T Consensus 173 ~ 173 (254)
T PRK06526 173 F 173 (254)
T ss_pred C
Confidence 4
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=86.16 Aligned_cols=93 Identities=24% Similarity=0.402 Sum_probs=69.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccc-----h-hh-HHHHHHhcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHT-----G-PK-TRRRIKEAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~-----~-~~-~~~~~~~a~~~v 309 (482)
....+||.||.|.||+.+|+.|...-. ..-..+++|+++++..+.+. .+|+. + .. -..+++.|.++.
T Consensus 207 sr~p~ll~gptgagksflarriyelk~-arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQ-ARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHH-HHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 456799999999999999999986443 23445779999999987654 45541 1 12 235678889999
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 346 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 346 (482)
||+|||..|....| .-|+..++++++
T Consensus 286 lfldeigelgadeq-----------amllkaieekrf 311 (531)
T COG4650 286 LFLDEIGELGADEQ-----------AMLLKAIEEKRF 311 (531)
T ss_pred EehHhhhhcCccHH-----------HHHHHHHHhhcc
Confidence 99999999988655 667777776443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-07 Score=77.83 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=60.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCC-CCCCCeEEeecccccc------c---ccc------cchhh----HHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPTDRVTEVQRTDLVG------E---FVG------HTGPK----TRRRI 302 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~-~~~~~~~~~~~~~~~~------~---~~g------~~~~~----~~~~~ 302 (482)
...++++||||+|||++++.+++.+..... ....+++.+..+.... . .++ .+... +.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 457899999999999999999998853100 0022455555443210 0 111 11222 22233
Q ss_pred HhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 303 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
+.....+|+|||+|.+. + ...++.|...++...+.+|+++++
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 33334699999999985 1 367788888888888877777655
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=91.08 Aligned_cols=88 Identities=30% Similarity=0.456 Sum_probs=58.8
Q ss_pred hHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc
Q 011578 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (482)
Q Consensus 50 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~ 129 (482)
-|||+++.....+-+..++.. .....++.+|..|+||||+|+..|+.+.++.|+.+||++..+|++||+|||-|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~--~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv--- 96 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLA--KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV--- 96 (560)
T ss_pred cccchhhhccchhhHHHHHhh--hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH---
Confidence 347777777666555554432 134556677777777777777777777777777777777777777777777777
Q ss_pred cCCChHHHHHHHhh
Q 011578 130 IRSEDYATVKTLLE 143 (482)
Q Consensus 130 ~~~~~~~~v~~Ll~ 143 (482)
..|+.+++..++.
T Consensus 97 -~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 97 -STGNEQIITEVLR 109 (560)
T ss_pred -HcCCHHHHHHHHH
Confidence 6666666665553
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-07 Score=91.59 Aligned_cols=100 Identities=28% Similarity=0.343 Sum_probs=88.8
Q ss_pred CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCC--ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcccc
Q 011578 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 151 (482)
Q Consensus 74 ~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~ 151 (482)
.|.++-.++.+.+|.||+|+..|+-++|+|++++|.. +++.|..|.|+||-|+ -.++..++++|++.|+..-..
T Consensus 888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa----~~~~r~vc~~lvdagasl~kt 963 (1004)
T KOG0782|consen 888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA----CQRNRAVCQLLVDAGASLRKT 963 (1004)
T ss_pred cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH----HhcchHHHHHHHhcchhheec
Confidence 4667788888999999999999999999999999954 6788899999999999 788999999999999999999
Q ss_pred CCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 152 DNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 152 d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
|..|.||- .-|...+..++..+|...
T Consensus 964 d~kg~tp~-eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 964 DSKGKTPQ-ERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred ccCCCChH-HHHHhcCCchHHHHHhhh
Confidence 99999998 666777888888887743
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=83.80 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=89.9
Q ss_pred HhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 338 MSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 338 l~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
|..+++|.+++|+|||.||...+ +|+|++|+ .+|.|.+++.+++.+++++.+..... .+ .....++++++.
T Consensus 1 Lp~vE~G~i~LIGATTENP~f~v---n~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~----~~-~~~~~i~~~al~ 71 (300)
T PRK14700 1 MPYVESGKIILIGATTENPTYYL---NDALVSRL-FILRLKRLSLVATQKLIEKALSQDEV----LA-KHKFKIDDGLYN 71 (300)
T ss_pred CCCccCCcEEEEeecCCCcccee---cHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhc----cC-CcCCCcCHHHHH
Confidence 34678999999999999999877 99999999 99999999999999999999976321 11 224568999999
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
.++... .|++|..-|++|.|.... . . +....||.+++++++++-
T Consensus 72 ~ia~~a-------~GDaR~aLN~LE~a~~~~-----~---~-~~~~~it~~~~~~~~~~~ 115 (300)
T PRK14700 72 AMHNYN-------EGDCRKILNLLERMFLIS-----T---R-GDEIYLNKELFDQAVGET 115 (300)
T ss_pred HHHHhc-------CCHHHHHHHHHHHHHhhc-----c---c-cCCCccCHHHHHHHHhHH
Confidence 999876 688899999999976421 0 0 111248899988887654
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=80.33 Aligned_cols=118 Identities=7% Similarity=0.012 Sum_probs=74.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE---------Eeecccccc-----cccccchhhHHHHHH---
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT---------EVQRTDLVG-----EFVGHTGPKTRRRIK--- 303 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~---------~~~~~~~~~-----~~~g~~~~~~~~~~~--- 303 (482)
..+..+||+||+|+||..+|.++|+.+..... .++.- ..+.+++.- .-++ ...++++.+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~--id~ir~l~~~l~ 80 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIK--KEDALSIINKLN 80 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCC--HHHHHHHHHHHc
Confidence 35677999999999999999999998854221 11110 011111111 1111 122333322
Q ss_pred h-----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCccee
Q 011578 304 E-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 304 ~-----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
. +...|++|+++|++.. .+.|.||..+|+ ...++|+ +.+++.+ .|.+++|+ ..+
T Consensus 81 ~~s~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LEEPp~~t~fiLit~~~~~l------LpTI~SRC-q~~ 142 (261)
T PRK05818 81 RPSVESNGKKIYIIYGIEKLNK-----------QSANSLLKLIEEPPKNTYGIFTTRNENNI------LNTILSRC-VQY 142 (261)
T ss_pred cCchhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhcCCCCCeEEEEEECChHhC------chHhhhhe-eee
Confidence 1 2348999999999987 555999999998 3444444 4334333 78899998 778
Q ss_pred eCCCC
Q 011578 376 HFNDF 380 (482)
Q Consensus 376 ~~~~~ 380 (482)
.|+.+
T Consensus 143 ~~~~~ 147 (261)
T PRK05818 143 VVLSK 147 (261)
T ss_pred ecCCh
Confidence 88888
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.3e-07 Score=83.86 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=44.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeecccccccccccchhhHHHHHHhc-CCcEEEEecccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYR 317 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~ 317 (482)
...+++|+||||||||.|+.++|+++... + ..++.++..++...... ......+.++.. ...+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g----~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG----VPVLYFPFVEGFGDLKD-DFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC----ceEEEEEHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEecccc
Confidence 35689999999999999999999988653 2 24455555444332111 001112222222 347999999944
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.8e-07 Score=83.06 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE---------eecccccc-ccccc--chhhHHHHHHh-----
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---------VQRTDLVG-EFVGH--TGPKTRRRIKE----- 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~g~--~~~~~~~~~~~----- 304 (482)
-+..+||+|| +||+++|+.+|+.+.........+.-. -+.+++.- .--|. .-..++++.+.
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4556899996 689999999999886533211111100 01111110 00011 12344554432
Q ss_pred --cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 305 --AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 305 --a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
+...|++||++|.+.. .+.|.||..+|+ ...++|+ |.+.+.+ .|.+++|+ ..|.|+.
T Consensus 101 ~~~~~kV~II~~ad~m~~-----------~AaNaLLKtLEEPp~~t~~iL~t~~~~~l------LpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV-----------NAANSLLKVIEEPQSEIYIFLLTNDENKV------LPTIKSRT-QIFHFPK 162 (290)
T ss_pred ccCCcEEEEeehhhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------chHHHHcc-eeeeCCC
Confidence 2337999999999987 445999999998 3344444 4333333 78899999 9999977
Q ss_pred CCHHHHHHHHH
Q 011578 380 FNSEELAKILH 390 (482)
Q Consensus 380 ~~~~~~~~il~ 390 (482)
+.++..+++.
T Consensus 163 -~~~~~~~~L~ 172 (290)
T PRK07276 163 -NEAYLIQLLE 172 (290)
T ss_pred -cHHHHHHHHH
Confidence 6666666664
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.3e-06 Score=83.45 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=38.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++++-+..-.+.++.|+.... .+.....-+||+||||||||+++++||++++.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~-----------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMF-----------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHh-----------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34556666666666776654332 11123345788999999999999999999975
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.9e-07 Score=82.96 Aligned_cols=75 Identities=25% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc-cchhhHHHHHHh--cCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE--AEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~--a~~~vl~iDE~d~l 318 (482)
...+++|+||||||||++|.+++..+...|. .+..++..++...+.. .....+...+.. ....+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~----~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI----KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4567999999999999999999987654332 4444555555433211 111123344443 34479999999876
Q ss_pred cc
Q 011578 319 IP 320 (482)
Q Consensus 319 ~~ 320 (482)
..
T Consensus 177 ~~ 178 (259)
T PRK09183 177 PF 178 (259)
T ss_pred CC
Confidence 44
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=68.91 Aligned_cols=69 Identities=32% Similarity=0.500 Sum_probs=49.2
Q ss_pred hHHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 197 KMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 197 ~~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
....++..+. .+.||+-+.+.+...+..... . .....|..+.|+||||||||.+++.||+.++..|..+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~--------~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S 84 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLA--------N-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS 84 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHc--------C-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence 3444555554 589999999888877654421 1 1233555667999999999999999999998766443
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-07 Score=87.38 Aligned_cols=93 Identities=23% Similarity=0.239 Sum_probs=77.5
Q ss_pred HhHHHHHcCCHHHHHHHHhhCC--CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 16 TIHGCAQSGDLLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 16 ~l~~a~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
-|..|+...|+..+..||.++- ...+...+..|+|+||+||..|++.+.++|+= .|+|+..+|..|+|+|.||-
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~yar 702 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW----YGVDVMARDAHGRTALFYAR 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH----hCccceecccCCchhhhhHh
Confidence 4778888889988888886542 22233333348999999999999999999996 68999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCcc
Q 011578 94 KNGCNEAAKLLLAHGAFIE 112 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~ 112 (482)
+.|..+|+.+|+++|+...
T Consensus 703 ~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hcccHHHHHHHHHcCCCcc
Confidence 9999999999999997543
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=83.42 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc-chhhHHHHHHhc-CCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
...+++|+||||||||.||.++|+++...+. .+..++.++++..+... ......+.++.. ...||+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV----SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc
Confidence 4578999999999999999999999975443 44555555554432111 011123344433 44899999997653
Q ss_pred cCCCCCCChhHHHHHHHHHh-hhcCCcEEEEEecC
Q 011578 320 PMQKADDKDYGIEALEEIMS-VMDGGKVVVIFAGY 353 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~-~l~~~~~~vi~~~~ 353 (482)
.+ .....+++..+++ .+..+..++|.++.
T Consensus 231 ~s-----~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 231 MS-----SWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cc-----HHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 31 1112245555543 34456666666643
|
|
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=84.35 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=41.1
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.|.|.+++|+.+.-. ...-.++.+.-.+......+|||.|.|||.|+-+.|-+-+..
T Consensus 332 SIfG~~DiKkAiaCl----LFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs 388 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACL----LFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS 388 (729)
T ss_pred hhcCchhHHHHHHHH----hhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence 478999999888764 233344444444444556789999999999999998887644
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.5e-07 Score=91.58 Aligned_cols=124 Identities=20% Similarity=0.251 Sum_probs=101.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCC---CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPS---LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
+.+.-.+..||+.|+.-.|+.+|..... ++|..|.- |.++||.|..+-+.+++++|+++ +... ..
T Consensus 23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~l-Gr~al~iai~nenle~~eLLl~~----~~~~-------gd 90 (822)
T KOG3609|consen 23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPL-GRLALHIAIDNENLELQELLLDT----SSEE-------GD 90 (822)
T ss_pred chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChH-hhhceecccccccHHHHHHHhcC----cccc-------ch
Confidence 3455567899999999999999986554 56888876 99999999999999999999994 2222 35
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCcc----------ccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIE----------AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 150 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~----------~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~ 150 (482)
+|.+|+..|.+++|++++.+..... ..-.-+.|||.+|| ..++++|+++|+.+|+.+..
T Consensus 91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAA----h~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAA----HLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHH----HhcchHHHHHHHHcCCCCCC
Confidence 8999999999999999998754321 12235789999999 89999999999999998654
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.1e-07 Score=78.66 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=46.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc-chhhHHHHHHh-cCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKE-AEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-a~~~vl~iDE~d~l 318 (482)
...+++|+||||||||.+|-++++++-..+. .+..++.+++...+-.. ......+.+.. ....+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 4568999999999999999999998876443 56667777665442211 11122233332 24589999999644
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=84.06 Aligned_cols=257 Identities=14% Similarity=0.169 Sum_probs=127.1
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC-
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR- 277 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~- 277 (482)
.+...+. +|.|++++|+.|.-.+ +--..++...|+++ ....+++|.|.||+.||-|-+.+.+.....-+.....
T Consensus 335 kLa~SiAPEIyGheDVKKaLLLlL--VGgvd~~~~dGMKI--RGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS 410 (721)
T KOG0482|consen 335 KLAASIAPEIYGHEDVKKALLLLL--VGGVDKSPGDGMKI--RGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS 410 (721)
T ss_pred HHHHhhchhhccchHHHHHHHHHh--hCCCCCCCCCCcee--ecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC
Confidence 3444443 6899999999887543 11122223334443 3456899999999999999999998654311111100
Q ss_pred -eEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhh----hcC--------C
Q 011578 278 -VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV----MDG--------G 344 (482)
Q Consensus 278 -~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~----l~~--------~ 344 (482)
=+.+.++-+.....|+.. .--.++-.|.+||--|||+|++..... -++.+.+++ +.+ .
T Consensus 411 SGVGLTAAVmkDpvTgEM~-LEGGALVLAD~GICCIDEfDKM~e~DR--------tAIHEVMEQQTISIaKAGI~TtLNA 481 (721)
T KOG0482|consen 411 SGVGLTAAVMKDPVTGEMV-LEGGALVLADGGICCIDEFDKMDESDR--------TAIHEVMEQQTISIAKAGINTTLNA 481 (721)
T ss_pred CccccchhhhcCCCCCeeE-eccceEEEccCceEeehhhhhhhhhhh--------HHHHHHHHhhhhhhhhhccccchhh
Confidence 011222211111122110 000123356779999999999976322 222222222 111 1
Q ss_pred cEEEEEecC--------chhHHHHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHH----hcccccccc---------
Q 011578 345 KVVVIFAGY--------SEPMKRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKM----NNQTEDSLL--------- 402 (482)
Q Consensus 345 ~~~vi~~~~--------~~~~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l----~~~~~~~~~--------- 402 (482)
+.-|++|.+ ....+.-+...++|++|||..+-+ +.||.+.=..+.+... .+......+
T Consensus 482 R~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR 561 (721)
T KOG0482|consen 482 RTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMR 561 (721)
T ss_pred hHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHH
Confidence 122233321 112233344468899999875543 5566543333333211 111100000
Q ss_pred ----ccccccCcccHHHHHHHHHHHhhHhhcc-------ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHH
Q 011578 403 ----YGFKLHSSCSMDAIAALIEKETTEKQRR-------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLE 471 (482)
Q Consensus 403 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~ 471 (482)
.--...|-+..+.-+.++..|...+... ....|.|-.++..+...+..|++ ..+..+|+.
T Consensus 562 ~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls---------~~V~~~DV~ 632 (721)
T KOG0482|consen 562 RYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLS---------DSVEEDDVN 632 (721)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhc---------cccchhhHH
Confidence 0001223334443344444443222222 23457777777777777666665 357778888
Q ss_pred HHHHHHH
Q 011578 472 AGLKLLL 478 (482)
Q Consensus 472 ~al~~~~ 478 (482)
+||.-+.
T Consensus 633 EALRLme 639 (721)
T KOG0482|consen 633 EALRLME 639 (721)
T ss_pred HHHHHHH
Confidence 8876543
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=78.06 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=51.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc-c-hhhHHHHHH-hcCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-T-GPKTRRRIK-EAEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~-~a~~~vl~iDE~d~l 318 (482)
...+++|+||||||||.||-||++++...|. .+..++.++++.+.-.. . +..-.++.+ -...-||+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~----sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI----SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 5678999999999999999999999975443 56677777776653221 0 111222333 234589999999766
Q ss_pred cc
Q 011578 319 IP 320 (482)
Q Consensus 319 ~~ 320 (482)
..
T Consensus 180 ~~ 181 (254)
T COG1484 180 PF 181 (254)
T ss_pred cC
Confidence 43
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-06 Score=78.62 Aligned_cols=127 Identities=7% Similarity=0.065 Sum_probs=81.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC---CCC-CCC--eEEeecccccccccccchhhHHHHHHh--------cCCc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG---ILP-TDR--VTEVQRTDLVGEFVGHTGPKTRRRIKE--------AEGG 308 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~-~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------a~~~ 308 (482)
.+..||+|+.|.||+++|+.+++.+.... ... ..| +..++. .+..++ ...++++.+. ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~--vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLS--KSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCC--HHHHHHHHHHhccCCcccCCce
Confidence 34577999999999999999999884321 000 111 222210 011111 1234444332 2448
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
|++||++|.+.. .+.|.|+..+++ ...++|+.++ ++ ..+ .|++++|+ .+++|++++.++..
T Consensus 93 vvII~~~e~m~~-----------~a~NaLLK~LEEPp~~t~~il~~~-~~-~kl---l~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTSN-----------SLLNALLKTIEEPPKDTYFLLTTK-NI-NKV---LPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccCH-----------HHHHHHHHHhhCCCCCeEEEEEeC-Ch-HhC---hHHHHhCe-EEEECCCCCHHHHH
Confidence 999999998876 455899999987 3444444433 22 333 67889999 89999999999998
Q ss_pred HHHHH
Q 011578 387 KILHI 391 (482)
Q Consensus 387 ~il~~ 391 (482)
+.+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 77764
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=80.40 Aligned_cols=65 Identities=26% Similarity=0.400 Sum_probs=33.9
Q ss_pred HHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCc
Q 011578 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120 (482)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 120 (482)
|..||+.|..+.|++|++ .|.++|.+|.+..+||.+|+-.||.++|++|+++||-...-...|.-
T Consensus 40 lceacR~GD~d~v~~LVe----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R 104 (516)
T KOG0511|consen 40 LCEACRAGDVDRVRYLVE----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR 104 (516)
T ss_pred HHHHhhcccHHHHHHHHH----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch
Confidence 455555555555555555 35555555555555555555555555555555555543333333433
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-06 Score=73.79 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=61.9
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----------------------cccccc-hhh----H
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------------------EFVGHT-GPK----T 298 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~g~~-~~~----~ 298 (482)
++++||||+|||+++..++...... ..+++.++...... .+.... ... .
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK----GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKA 77 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc----CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHH
Confidence 6899999999999999999987542 22333333322111 000110 111 1
Q ss_pred HHHHHhcCCcEEEEecccccccCCC---CCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 299 RRRIKEAEGGILFVDEAYRLIPMQK---ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 299 ~~~~~~a~~~vl~iDE~d~l~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
..........+|+|||+..+.+... .+......+.+..|+....+..+.+|++++..
T Consensus 78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 1222334558999999998875322 12233445677788888776666666665443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-07 Score=94.40 Aligned_cols=88 Identities=36% Similarity=0.437 Sum_probs=77.7
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..|.|+||.|+..|..-++++|+++|+++|..|..|+||||.+. ..|+...+.+|+++|+++++.+.+|.+|++++
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~----~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHAT----ASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhh----hhcccchhhhhccccccccccCccCcchhhHH
Confidence 45799999999999999999999999999999999999999999 88999999999999999999999999999766
Q ss_pred hcCCCChHHHHHH
Q 011578 163 SNGPGSAKLRELL 175 (482)
Q Consensus 163 a~~~~~~~~~~lL 175 (482)
... .+..++-++
T Consensus 730 ~~~-~~~d~~~l~ 741 (785)
T KOG0521|consen 730 MEA-ANADIVLLL 741 (785)
T ss_pred hhh-ccccHHHHH
Confidence 554 444444333
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-05 Score=77.36 Aligned_cols=173 Identities=14% Similarity=0.201 Sum_probs=90.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc-------cccccccccchhhHH-----HHH-Hhc-----
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHTGPKTR-----RRI-KEA----- 305 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~-----~~~-~~a----- 305 (482)
.-+|++||+||||||..+.|+++++. .+.++... .+-..-.+.+..... +-| ..+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~-------~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~ 183 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGY-------QLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGS 183 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCc-------eeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhch
Confidence 45889999999999999999999986 44554421 111111111111111 111 111
Q ss_pred ----------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCc-----hhHHHHHhcCccc
Q 011578 306 ----------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYS-----EPMKRVIASNEGF 367 (482)
Q Consensus 306 ----------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~-----~~~~~~~~~~~~l 367 (482)
...+|||||+=..+... .. +.+...|+.+-. -.+|++.|... +....+ -.+--.
T Consensus 184 l~~~g~~~~~~~~liLveDLPn~~~~d---~~----~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf-~~d~q~ 255 (634)
T KOG1970|consen 184 LQMSGDDLRTDKKLILVEDLPNQFYRD---DS----ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLF-PKDIQE 255 (634)
T ss_pred hhhcccccccCceEEEeeccchhhhhh---hH----HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhc-hhhhhh
Confidence 12589999986554321 11 333333333322 22444444321 111100 000001
Q ss_pred cCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 368 CRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 368 ~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.-|+ ..|.|.+..+.-+.+.|.+++..+..... ++++. +...+..++.+. +.+||.++......
T Consensus 256 ~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s--~~k~~---~~~~v~~i~~~s----------~GDIRsAInsLQls 319 (634)
T KOG1970|consen 256 EPRI-SNISFNPIAPTIMKKFLKRICRIEANKKS--GIKVP---DTAEVELICQGS----------GGDIRSAINSLQLS 319 (634)
T ss_pred ccCc-ceEeecCCcHHHHHHHHHHHHHHhccccc--CCcCc---hhHHHHHHHHhc----------CccHHHHHhHhhhh
Confidence 2255 68999999999999999888887653211 11111 345666666654 45666666554443
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.3e-07 Score=93.19 Aligned_cols=122 Identities=25% Similarity=0.288 Sum_probs=78.0
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~ 126 (482)
|+|.+|+++..++...++.+++. .+......|.+|...+|+ |..++++++-+|+. .|..++.+|.+||||||+|+
T Consensus 574 ~~lllhL~a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa 649 (975)
T KOG0520|consen 574 DMLLLHLLAELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA 649 (975)
T ss_pred chHHHHHHHHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence 77777777777777777777773 133344445555566666 44455555544443 56777777777777777777
Q ss_pred hhccCCChHHHHHHHhhCCCC------ccccCCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 127 WYSIRSEDYATVKTLLEYNAD------CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad------~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
..|+..++..|++.|++ ++..+..|.|+- ..+..+++..+..+|.+.
T Consensus 650 ----~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~-~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 650 ----FRGREKLVASLIELGADPGAVTDPSPETPGGKTAA-DLARANGHKGIAGYLSEK 702 (975)
T ss_pred ----hcCHHHHHHHHHHhccccccccCCCCCCCCCCchh-hhhhcccccchHHHHhhh
Confidence 66777777777755443 344455677777 444556666666666655
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-05 Score=79.57 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.-|+++.|++++++++.+++..... +. . ....-++|.||||+|||+||++||+.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~-------gl--~-~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ-------GL--E-EKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH-------hc--C-CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3467789999999999987532211 11 1 13356889999999999999999998864
|
|
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-05 Score=79.06 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=59.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-------CeE
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------RVT 279 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~-------~~~ 279 (482)
.|.|+..+|..+.-.+- .-..+..+-......-.++||.|.||||||-+.|..++..... +..++ -..
T Consensus 450 sIyGh~~VK~AvAlaLf----GGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA-V~tTGqGASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALF----GGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA-VFTTGQGASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHh----cCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce-eEeccCCccccceeE
Confidence 57888888888764321 1111111222223345689999999999999999999866531 11110 001
Q ss_pred EeecccccccccccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
.+.-.-...+|.=+.+ ++-.|.+||-+|||+|++..
T Consensus 525 ~v~KdPvtrEWTLEaG-----ALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAG-----ALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred EEeeCCccceeeeccC-----eEEEccCceEEeehhhhhcc
Confidence 1111111222332222 33457789999999999975
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-06 Score=78.91 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC--eEEeecccccccccccchhhHHHHHHh--------------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKTRRRIKE--------------A 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------a 305 (482)
...++||.||+|||||++++.+-..+.. .. ...++.+... +...+.++++. .
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~------~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~ 99 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS------DKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGG 99 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTT------CCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESS
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCc------cccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCC
Confidence 3568999999999999999886543221 12 1122222110 11122222211 1
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh---hcC--------CcEEEEEecCchhHHHHHhcCccccCCCcce
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~---l~~--------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
+..|+|||++..-.+...+ .....+.+.++++. .|. .++.+++|.++..-. ....|.|.+.| .+
T Consensus 100 k~lv~fiDDlN~p~~d~yg--tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr--~~is~R~~r~f-~i 174 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYG--TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR--NPISPRFLRHF-NI 174 (272)
T ss_dssp SEEEEEEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT----SHHHHHHTTE-EE
T ss_pred cEEEEEecccCCCCCCCCC--CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC--CCCChHHhhhe-EE
Confidence 2279999999766553321 11112333333322 111 235666665543211 11267788888 79
Q ss_pred eeCCCCCHHHHHHHHHHHHhcc
Q 011578 375 FHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~ 396 (482)
+.++.|+.+.+..|+..++...
T Consensus 175 ~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EE----TCCHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhhh
Confidence 9999999999999999888754
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-06 Score=93.18 Aligned_cols=86 Identities=31% Similarity=0.429 Sum_probs=79.1
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.|+||.|+..|..-++++|++ .++++|..|..|+||||.+...|+...+..|+++|++.++.+..|.+||++|.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~- 730 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM- 730 (785)
T ss_pred ccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh-
Confidence 7999999999999999999999 68889999999999999999999999999999999999999999999999998
Q ss_pred hccCCChHHHHHHH
Q 011578 128 YSIRSEDYATVKTL 141 (482)
Q Consensus 128 ~~~~~~~~~~v~~L 141 (482)
...+.+++-+|
T Consensus 731 ---~~~~~d~~~l~ 741 (785)
T KOG0521|consen 731 ---EAANADIVLLL 741 (785)
T ss_pred ---hhccccHHHHH
Confidence 44556665554
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=72.79 Aligned_cols=68 Identities=29% Similarity=0.462 Sum_probs=48.7
Q ss_pred cccccCcCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 76 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
.++|.+|.+|+|||+.|+..|+.+.|.||+.+| +.|...|..|.+++.+|- ..|+.++++.|.+.-.+
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlae----k~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAE----KGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHH----hcChHHHHHHHHHHhcc
Confidence 456777777777777777777777777777777 677777777777777777 67777777777665333
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.4e-06 Score=79.62 Aligned_cols=85 Identities=25% Similarity=0.249 Sum_probs=73.8
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
.--|..||+.|.++.|++|++.|.++|.+|+....||.+|+ -.||.++|++|+++||-+.--..+|..++ +.|.
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAs----LcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaL- 110 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLAS----LCGHEDVVKLLLENGAICSRDTFDGDRCH-YGAL- 110 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHH----HcCcHHHHHHHHHcCCcccccccCcchhh-hhhh-
Confidence 44588999999999999999999999999999999999999 88999999999999999987777888886 6554
Q ss_pred CCChHHHHHHHhh
Q 011578 166 PGSAKLRELLLWH 178 (482)
Q Consensus 166 ~~~~~~~~lL~~~ 178 (482)
+..+...|+.+
T Consensus 111 --nd~IR~mllsy 121 (516)
T KOG0511|consen 111 --NDRIRRMLLSY 121 (516)
T ss_pred --hHHHHHHHHHH
Confidence 34566666654
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.2e-05 Score=74.22 Aligned_cols=219 Identities=19% Similarity=0.225 Sum_probs=103.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc---------------ccccc-c----hhhHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG---------------EFVGH-T----GPKTRR 300 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~g~-~----~~~~~~ 300 (482)
.+|..++|+|++|+||||++..||..+...+. .+.-+++..... ..++. . ...+.+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~----kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGL----KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 35677999999999999999999998875432 222233222100 01111 1 122344
Q ss_pred HHHhcC-CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccCCCc-ceeeC
Q 011578 301 RIKEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVT-KFFHF 377 (482)
Q Consensus 301 ~~~~a~-~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~-~~i~~ 377 (482)
.++.+. .-+|+||...++... +...+-+..+........+++++ +++........ ..+...++ .-+-+
T Consensus 169 al~~~~~~DvVIIDTAGr~~~d------~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a---~~F~~~l~i~gvIl 239 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHALE------EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA---KAFHEAVGIGGIII 239 (437)
T ss_pred HHHHhhcCCEEEEECCCcccch------HHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH---HHHHhcCCCCEEEE
Confidence 454433 379999998766531 11122233344444444554444 43332222111 11222221 23334
Q ss_pred CCCCHHHHH-HHHHHH-HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCC
Q 011578 378 NDFNSEELA-KILHIK-MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD 455 (482)
Q Consensus 378 ~~~~~~~~~-~il~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~ 455 (482)
...|...+. .++... ....+-.....|-.+ .++..-.-..++..- ....++..+++.|.......-...
T Consensus 240 TKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v-~Dle~f~~~~~~~~i--------lgmgd~~~l~e~~~~~~~~~~~~~ 310 (437)
T PRK00771 240 TKLDGTAKGGGALSAVAETGAPIKFIGTGEKI-DDLERFDPDRFISRL--------LGMGDLESLLEKVEEALDEEEEEK 310 (437)
T ss_pred ecccCCCcccHHHHHHHHHCcCEEEEecCCCc-ccCCcCCHHHHHHHH--------hCCCChHHHHHHHHHhhhHHHHHH
Confidence 555543332 222211 112221111123333 333333333333332 234577888887766531110000
Q ss_pred CCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 456 CLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 456 ~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
....-..-.+|.+||.+-++.+++.|
T Consensus 311 ~~~~~~~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 311 DVEKMMKGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHhcC
Confidence 00001113689999999999999988
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.5e-06 Score=87.88 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=109.3
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc--eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH--MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.++.|.......+..++...... +...+.......... ++++||||.|||+.|.+.|+.++. .+++.++
T Consensus 320 k~~~~~~~~~~~~~~~l~~~k~~--~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~-------~v~E~Na 390 (871)
T KOG1968|consen 320 KALEGNASSSKKASKWLAKSKDK--EKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF-------KVVEKNA 390 (871)
T ss_pred HhhhcccchhhhhhhHHHhhhcc--ccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc-------ceeecCc
Confidence 34555554444555555444222 111112122222222 689999999999999999999987 7888888
Q ss_pred ccccccccc-----c--chhhHHHHHH-------h-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEE
Q 011578 284 TDLVGEFVG-----H--TGPKTRRRIK-------E-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVV 347 (482)
Q Consensus 284 ~~~~~~~~g-----~--~~~~~~~~~~-------~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~ 347 (482)
++..+++.. . +...+...+. . ....||++||+|.+... . +..+.++.+.... ..-+
T Consensus 391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-d-------Rg~v~~l~~l~~ks~~Pi 462 (871)
T KOG1968|consen 391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-D-------RGGVSKLSSLCKKSSRPL 462 (871)
T ss_pred cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-h-------hhhHHHHHHHHHhccCCe
Confidence 876655322 2 1222223331 1 12359999999998761 1 1233444444443 3334
Q ss_pred EEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 348 VIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 348 vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
++.|+..+.. ...-..|-+.-++|+.|+.+.+..-+...+..+. ..++...+..+...+
T Consensus 463 v~~cndr~~p------~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~-----------~ki~~~~l~~~s~~~ 521 (871)
T KOG1968|consen 463 VCTCNDRNLP------KSRALSRACSDLRFSKPSSELIRSRIMSICKSEG-----------IKISDDVLEEISKLS 521 (871)
T ss_pred EEEecCCCCc------cccchhhhcceeeecCCcHHHHHhhhhhhhcccc-----------eecCcHHHHHHHHhc
Confidence 4445333221 1212335557899999999999888888777653 346788899998876
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-05 Score=65.61 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=27.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
....+.++||||+||||++..++..+...++..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 356799999999999999999999997765433
|
|
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=67.49 Aligned_cols=161 Identities=11% Similarity=0.192 Sum_probs=89.6
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE--Eeeccc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT--EVQRTD 285 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~--~~~~~~ 285 (482)
+.|..+-...+.++++.... .....++++.||-|+|||++.-..-...... ...|+ .+++.-
T Consensus 26 l~g~~~~~~~l~~~lkqt~~------------~gEsnsviiigprgsgkT~li~~~Ls~~q~~----~E~~l~v~Lng~~ 89 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL------------HGESNSVIIIGPRGSGKTILIDTRLSDIQEN----GENFLLVRLNGEL 89 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH------------hcCCCceEEEccCCCCceEeeHHHHhhHHhc----CCeEEEEEECccc
Confidence 45666666666665443321 1345689999999999998755443332111 11333 333221
Q ss_pred c-------------------cccccccchhhHHHHHHhc-------CCcEEEE-eccccccc-CCCCCCChhHHHHHHHH
Q 011578 286 L-------------------VGEFVGHTGPKTRRRIKEA-------EGGILFV-DEAYRLIP-MQKADDKDYGIEALEEI 337 (482)
Q Consensus 286 ~-------------------~~~~~g~~~~~~~~~~~~a-------~~~vl~i-DE~d~l~~-~~~~~~~~~~~~~~~~l 337 (482)
. ..+.+|....++..++..- .+.|+|| ||||-+.+ +|| -.+-.|
T Consensus 90 ~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------tllYnl 161 (408)
T KOG2228|consen 90 QTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ--------TLLYNL 161 (408)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhh--------HHHHHH
Confidence 1 1123444444454444321 1247777 79999876 455 233333
Q ss_pred Hhhhc--CCcEEEEEecCchhHHHHHhcCccccCCCcce-eeC-CCCCHHHHHHHHHHHHh
Q 011578 338 MSVMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKF-FHF-NDFNSEELAKILHIKMN 394 (482)
Q Consensus 338 l~~l~--~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~-i~~-~~~~~~~~~~il~~~l~ 394 (482)
...-+ ...+.||+.|+.-...+.++. ...+||..+ |++ |+..-++...+++..+.
T Consensus 162 fDisqs~r~Piciig~Ttrld~lE~LEK--RVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 162 FDISQSARAPICIIGVTTRLDILELLEK--RVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHhhcCCCeEEEEeeccccHHHHHHH--HHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 33333 255788888776666555433 457799443 554 55556888888887663
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.1e-06 Score=89.07 Aligned_cols=128 Identities=20% Similarity=0.087 Sum_probs=102.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....|.+.+|+++..+....+..+++..+...+..+.. |.-.+|+ |..++++..-+++.. .+..++.+|..|+|
T Consensus 569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d-~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~t 643 (975)
T KOG0520|consen 569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRD-GQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWT 643 (975)
T ss_pred cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhccc-CCChhhH-hhhcCCceeEEEEee---cccccccccCCCCc
Confidence 445678999999999999999999997534444444443 7777787 666777777777765 68889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccc------cccCCCcceeeehhhccCCChHHHHHHHhhC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEA------KANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~------~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ 144 (482)
|||||+..|+..++..|++.|++.+. ....|.|+--.|. ..|+..+.-+|-+.
T Consensus 644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~----s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR----ANGHKGIAGYLSEK 702 (975)
T ss_pred ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh----cccccchHHHHhhh
Confidence 99999999999999999998875443 3456888888887 88899898888876
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=71.45 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=23.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++++|+||||||++|.+|++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.4e-05 Score=66.36 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=64.1
Q ss_pred CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCC-cccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccccc
Q 011578 38 SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN 116 (482)
Q Consensus 38 ~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 116 (482)
.++|.+|.. |||||+.|+..|+.+.+.+|+.+ | +.+...|..|.+++-+|-+.|..+++..|.+.-.+-...+.
T Consensus 3 ~~in~rD~f-gWTalmcaa~eg~~eavsyllgr----g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n 77 (223)
T KOG2384|consen 3 GNINARDAF-GWTALMCAAMEGSNEAVSYLLGR----GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN 77 (223)
T ss_pred CCccchhhh-cchHHHHHhhhcchhHHHHHhcc----CcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence 467888886 99999999999999999999995 5 78889999999999999999999999999997555444333
|
|
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=63.20 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCC-CCCCCeEEeecc-cccccccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGI-LPTDRVTEVQRT-DLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
|.|+||||+|||++|+.|++.+..... .....++..++. +....|. ...|+++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~--------------~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ--------------GQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC--------------CCcEEEEeecCcccccc-
Confidence 579999999999999999998875321 111223222221 1111111 34789999997665421
Q ss_pred CCCChhHHHHHHHHHhhhcCCcE
Q 011578 324 ADDKDYGIEALEEIMSVMDGGKV 346 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~l~~~~~ 346 (482)
.......|++.++...+
T Consensus 66 ------~~~~~~~l~~l~s~~~~ 82 (107)
T PF00910_consen 66 ------NYSDESELIRLISSNPF 82 (107)
T ss_pred ------chHHHHHHHHHHhcCCc
Confidence 11244667777765443
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-05 Score=77.07 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE--eecccccccccccchhhHHHHHHh-cCC-cEEEEecc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLVGEFVGHTGPKTRRRIKE-AEG-GILFVDEA 315 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~-a~~-~vl~iDE~ 315 (482)
...+.++.||||+|+|||+|.-.+...+.... .....|.. .....-..++.|... .+..+.+. +.. .||.|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k~R~HFh~Fm~~vh~~l~~~~~~~~-~l~~va~~l~~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-KRRVHFHEFMLDVHSRLHQLRGQDD-PLPQVADELAKESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccc-cccccccHHHHHHHHHHHHHhCCCc-cHHHHHHHHHhcCCEEEEeee
Confidence 45789999999999999999999988664311 11111110 000001111122111 12222222 233 49999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHH
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 358 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~ 358 (482)
.--... .--++..|++.+=...+++|+|+|..|-+
T Consensus 137 ~V~Dia--------DAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 137 QVTDIA--------DAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred eccchh--------HHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 644321 12566777777666677777777655543
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-05 Score=70.32 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=57.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccccchhhHHHHHHh------------cCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGHTGPKTRRRIKE------------AEG 307 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~------------a~~ 307 (482)
...++.||||||||++.+.+...+...+ ..++.+.++.-... ..|.....+...+.. ...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g----~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~ 94 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG----KRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKK 94 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TST
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcc
Confidence 4577899999999999999999887643 25666665432111 122222223333221 123
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
.||+|||+..+.. ..+..|+.........+|+.+.++.+
T Consensus 95 ~vliVDEasmv~~-----------~~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 95 DVLIVDEASMVDS-----------RQLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp SEEEESSGGG-BH-----------HHHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred cEEEEecccccCH-----------HHHHHHHHHHHhcCCEEEEECCcchh
Confidence 7999999988876 45577778777744455555445543
|
|
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00029 Score=68.60 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=58.2
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCc----------cccC-CCccee
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNE----------GFCR-RVTKFF 375 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~----------~l~~-R~~~~i 375 (482)
.-||||||+|++.+ +...+++..+-..++-..+++|++..++.+...+...- ..++ -|+..+
T Consensus 173 ~iViiIDdLDR~~~-------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~ 245 (325)
T PF07693_consen 173 RIVIIIDDLDRCSP-------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPF 245 (325)
T ss_pred eEEEEEcchhcCCc-------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEE
Confidence 37999999999976 33445556555556667788888766666555443321 2233 448889
Q ss_pred eCCCCCHHHHHHHHHHHHhccc
Q 011578 376 HFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.+|+++..+..+++...+.+..
T Consensus 246 ~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 246 SLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred EeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999888766543
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00022 Score=64.31 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=102.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----cccccc--c-------------hhhHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGH--T-------------GPKTRRRI 302 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~--~-------------~~~~~~~~ 302 (482)
..-+.++|+.|+|||++.|++...+.... ...+.++...+. ..++-+ + ...+...+
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~----~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQ----VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCc----eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 34578999999999999997776554211 122233332211 111111 1 11111222
Q ss_pred HhcCC-cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHH-HhcCccccCCCcceeeCC
Q 011578 303 KEAEG-GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV-IASNEGFCRRVTKFFHFN 378 (482)
Q Consensus 303 ~~a~~-~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~-~~~~~~l~~R~~~~i~~~ 378 (482)
.+... -++++||++.+..+.- +++..|...-++ +..-++..+.+.-..++ ...-..+..|++..|+++
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~l--------e~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSAL--------EALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHH--------HHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecC
Confidence 33333 7999999999976322 333333333333 33456666555433222 000133455998889999
Q ss_pred CCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 379 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 379 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++.++-...++..++.-. ...+=++.+++..+..... +--+.+.+++..|....
T Consensus 199 P~~~~~t~~yl~~~Le~a~--------~~~~l~~~~a~~~i~~~sq-------g~P~lin~~~~~Al~~a 253 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAG--------LPEPLFSDDALLLIHEASQ-------GIPRLINNLATLALDAA 253 (269)
T ss_pred CcChHHHHHHHHHHHhccC--------CCcccCChhHHHHHHHHhc-------cchHHHHHHHHHHHHHH
Confidence 9999999999999988653 2334567777777766553 23456667766666543
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=64.01 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=59.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
..+++.||||+||||+|+.|++.++. +++.++. +.-. .+ -.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~-------~~~~lD~--l~~~-----------------~~-------------w~ 42 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI-------PVHHLDA--LFWK-----------------PN-------------WE 42 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC-------Cceecch--hhcc-----------------cC-------------Cc
Confidence 36899999999999999999998865 4443321 1000 00 00
Q ss_pred CCCChhHHHHHHHHHhh-hcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 324 ADDKDYGIEALEEIMSV-MDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~-l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
..+. +....+++. +.... .||-.++....... ..++|.+|.+..|...-..+++++.++..
T Consensus 43 ~~~~----~~~~~~~~~~~~~~~-wVidG~~~~~~~~~-------l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~ 104 (167)
T PRK08118 43 GVPK----EEQITVQNELVKEDE-WIIDGNYGGTMDIR-------LNAADTIIFLDIPRTICLYRAFKRRVQYR 104 (167)
T ss_pred CCCH----HHHHHHHHHHhcCCC-EEEeCCcchHHHHH-------HHhCCEEEEEeCCHHHHHHHHHHHHHHHc
Confidence 0000 111222222 33333 34444344333211 33688999999999888899999988643
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.2e-05 Score=67.33 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.9
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++||||||||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999998886643
|
A related protein is found in archaea. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00093 Score=66.64 Aligned_cols=219 Identities=17% Similarity=0.169 Sum_probs=102.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeecccccc----------c-----cc----ccchhhH-H
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVG----------E-----FV----GHTGPKT-R 299 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~----------~-----~~----g~~~~~~-~ 299 (482)
.+|..++|.||+|+||||++..+|..+... +. .+.-+++..... . ++ +.....+ .
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~----kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~ 173 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKK----KVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAK 173 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCC----cEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence 346678899999999999999999987653 32 233333332111 0 01 1122222 2
Q ss_pred HHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccCCCc-ce
Q 011578 300 RRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVT-KF 374 (482)
Q Consensus 300 ~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~-~~ 374 (482)
+.++.+ ..-+|+||=..++.. ++...+.+..+...+....+++++ +++....... -..+..+++ .-
T Consensus 174 ~a~~~a~~~~~DvVIIDTaGrl~~------d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~---a~~F~~~~~i~g 244 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAGRLHI------DEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNT---AKAFNEALGLTG 244 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccc------CHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHH---HHHHHhhCCCCE
Confidence 344332 346999998876653 122223334444444444555555 3332222211 122222221 22
Q ss_pred eeCCCCCHHHHHHHHHHHHhcccccccc--ccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 375 FHFNDFNSEELAKILHIKMNNQTEDSLL--YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
+-+..+|...+.-.+-...........+ .|-.+ .++..-.-..++.. .....++..+++.|.......-
T Consensus 245 iIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v-~DLe~f~p~~~~~~--------ilgmgD~~~l~e~~~~~~~~~~ 315 (433)
T PRK10867 245 VILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKL-DDLEPFHPDRMASR--------ILGMGDVLSLIEKAQEVVDEEK 315 (433)
T ss_pred EEEeCccCcccccHHHHHHHHHCcCEEEEeCCCcc-ccCccCCHHHHHHH--------HhCCCChHHHHHHHHHhhCHHH
Confidence 3344455333322222222221111111 12222 22222222222322 2235678888888776531110
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
.......-..-..|.+||.+-++.+++.|
T Consensus 316 ~~~~~~~~~~g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 316 AEKLAKKLKKGKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 00000000112689999999999999987
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=63.83 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=60.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~ 324 (482)
.+++.|+||+||||+|+.|+..++. +++..+ .+. + .++ + .+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D--~~~--~---------------~~~--~-~~~--------- 43 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLD--TLH--F---------------QPN--W-QER--------- 43 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecC--CEE--e---------------ccc--c-ccC---------
Confidence 5889999999999999999987643 333322 110 0 000 0 000
Q ss_pred CCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 325 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
+ ..+.+..+...+.++. .||=+++.... .+....++|.+|.+..|-..-+.+++++.+..
T Consensus 44 -~---~~~~~~~~~~~~~~~~-wIidg~~~~~~------~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 44 -D---DDDMIADISNFLLKHD-WIIDGNYSWCL------YEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred -C---HHHHHHHHHHHHhCCC-EEEcCcchhhh------HHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 0 0122233344455555 44444444322 12334478899999999999999999998864
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.4e-05 Score=69.04 Aligned_cols=65 Identities=29% Similarity=0.248 Sum_probs=48.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~ 320 (482)
..+..++||+|||||.+.|.+|+.++. +++.+++++...- ..+.++|.- ..|+-+.+||++++..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~-------~~~vfnc~~~~~~------~~l~ril~G~~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGR-------FVVVFNCSEQMDY------QSLSRILKGLAQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT---------EEEEETTSSS-H------HHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCC-------eEEEecccccccH------HHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence 356778999999999999999999987 8888998875432 334555542 2478999999999975
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00016 Score=68.94 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc----cc---cccccc---------hhhHHH-HHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VG---EFVGHT---------GPKTRR-RIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~----~~---~~~g~~---------~~~~~~-~~~~ 304 (482)
....+.++|++|+|||++|+.+++............++.+..... .. ..++.. .....+ +.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 456788999999999999999998755322221122333332211 00 011111 111222 2221
Q ss_pred --cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh---cCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 305 --AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM---DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 305 --a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l---~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
.+.++|+||+++... .+..+...+ ..+.. ||+||...... .... .-...++++.
T Consensus 98 L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~k-ilvTTR~~~v~------~~~~-~~~~~~~l~~ 156 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSSGSK-ILVTTRDRSVA------GSLG-GTDKVIELEP 156 (287)
T ss_dssp HCCTSEEEEEEEE-SHH-------------HH-------HCHHSS-E-EEEEESCGGGG------TTHH-SCEEEEECSS
T ss_pred hccccceeeeeeecccc-------------ccccccccccccccccc-ccccccccccc------cccc-cccccccccc
Confidence 236899999987543 222233332 22433 44444333221 1111 1147899999
Q ss_pred CCHHHHHHHHHHHHhcc
Q 011578 380 FNSEELAKILHIKMNNQ 396 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~ 396 (482)
++.++-.+++.......
T Consensus 157 L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRK 173 (287)
T ss_dssp --HHHHHHHHHHHHTSH
T ss_pred ccccccccccccccccc
Confidence 99999999999886543
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-05 Score=81.55 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=100.0
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
+.--...||.+|+...|+..++.......++|..|..|+++|+.|..+.+.+++++|++++..+ ..+|.+|+
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI- 96 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI- 96 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH-
Confidence 3445778999999999999998655456789999999999999999999999999999998766 34788888
Q ss_pred hccCCChHHHHHHHhhCCCCc----------cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHH
Q 011578 128 YSIRSEDYATVKTLLEYNADC----------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~----------~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (482)
+.|...+|++++.+-... ...-..+-||+ ..|+..++.+++.+|+..|+..
T Consensus 97 ---~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl-iLAAh~NnyEil~~Ll~kg~~i 157 (822)
T KOG3609|consen 97 ---AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL-MLAAHLNNFEILQCLLTRGHCI 157 (822)
T ss_pred ---HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH-HHHHHhcchHHHHHHHHcCCCC
Confidence 899999999999773332 12334578999 6677778888999998887653
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0015 Score=64.72 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.++..++|.||+|+||||++..||..+...+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3456788999999999999999999886543
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0015 Score=63.48 Aligned_cols=139 Identities=19% Similarity=0.196 Sum_probs=80.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------------------ccc----------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------------------FVG----------H 293 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g----------~ 293 (482)
+...+.+.||..+|||++...+.+.+...++ ..+.++...+-.. .++ +
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~----~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~ 105 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY----RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE 105 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCC----EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 4567889999999999999999988875443 3333443321110 000 0
Q ss_pred ---chhhHHHHHHh------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------CcEEEEEecCchhH
Q 011578 294 ---TGPKTRRRIKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGYSEPM 357 (482)
Q Consensus 294 ---~~~~~~~~~~~------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~vi~~~~~~~~ 357 (482)
+.......|++ .++-||||||||.+....+ ...+.+..|....+. .++++|++..+...
T Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-----~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-----IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-----hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 11122222322 2457999999999986322 223444433333332 34666666554333
Q ss_pred HHHHhc-CccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 358 KRVIAS-NEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 358 ~~~~~~-~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
.. ... .+++ -+...|.++.++.+|...+++.+
T Consensus 181 ~~-~~~~~SPF--NIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 181 II-LDINQSPF--NIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred cc-cCCCCCCc--ccccceeCCCCCHHHHHHHHHhh
Confidence 21 111 2333 44678999999999999988765
|
|
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00052 Score=64.11 Aligned_cols=166 Identities=11% Similarity=0.153 Sum_probs=89.0
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++-.+++.+.+.++.+.+ ..+..|+||.|.+|+||++++|..|...+. .++.+..+.-
T Consensus 9 ~lVlf~~ai~hi~ri~RvL--------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~-------~~~~i~~~~~ 67 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL--------------SQPRGHALLVGVGGSGRQSLARLAAFICGY-------EVFQIEITKG 67 (268)
T ss_dssp -----HHHHHHHHHHHHHH--------------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE-------EEE-TTTSTT
T ss_pred ceeeHHHHHHHHHHHHHHH--------------cCCCCCeEEecCCCccHHHHHHHHHHHhcc-------ceEEEEeeCC
Confidence 4667777777777765444 246688999999999999999988876554 5555543321
Q ss_pred cccccccchhhHHHHHHhc----CCcEEEEecccccccCC--------CCC------CChhHHHHHHHHHhhhc------
Q 011578 287 VGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQ--------KAD------DKDYGIEALEEIMSVMD------ 342 (482)
Q Consensus 287 ~~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~--------~~~------~~~~~~~~~~~ll~~l~------ 342 (482)
. -..+-...++.++..| ++.+++|++-+-..... .++ +.+....+++.+.....
T Consensus 68 y--~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~ 145 (268)
T PF12780_consen 68 Y--SIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISD 145 (268)
T ss_dssp T--HHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--S
T ss_pred c--CHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCC
Confidence 0 0111112344555443 34777777644322110 001 12222333333332221
Q ss_pred --------------CC-cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 343 --------------GG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 343 --------------~~-~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
.+ .+++++....+.+....+..|+|..++ .+.-|.+-+.+.+..+...++++.
T Consensus 146 ~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 146 SRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp SHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 11 234444433333344455679999877 677778888899999999988764
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=70.97 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=23.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++|+||||||||++|-+|++.+.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999874
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00028 Score=61.87 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+++.+++.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999887753
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=63.72 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
+++++|+||+||||+.+.+.+.+...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc
Confidence 58999999999999999999999543
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.5e-05 Score=64.63 Aligned_cols=33 Identities=30% Similarity=0.629 Sum_probs=26.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.+++.||||+||||+|+.||+.+ ++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~---------~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL---------GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---------CCcEEcHhHH
Confidence 58999999999999999999984 4555654444
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0003 Score=71.54 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=63.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
..++|+||||||||+++.+|.+.++. ..+.++.+...+. |.| -.+...+.+||++-.-....
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G-------~vlsVNsPt~ks~FwL~----------pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG-------KSLNVNCPPDKLNFELG----------CAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEEeeCCcchhHHHhh----------hhhhceEEEeeecccccccc
Confidence 36899999999999999999998843 4455554332111 111 12345788899885433311
Q ss_pred CCCCChhHHHHHHHHHhhhcCC-cE---------------EEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 323 KADDKDYGIEALEEIMSVMDGG-KV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~-~~---------------~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
..-+...+..-+.-|...+|+. .| -.|.|++...+ +..+.-||-.++.|..
T Consensus 495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~i------P~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYLI------PQTVKARFAKVLDFKP 561 (647)
T ss_pred ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCccc------chhHHHHHHHhccccc
Confidence 1011111122235566777765 21 23334322222 4555668888888754
|
|
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=62.87 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=68.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKAD 325 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~ 325 (482)
++++||+|||||.+|-.+|+.++. +++..+.-....+..-.+++....-+...+. +||||-. +.. .--+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y~~l~v~Sgrp~~~el~~~~R--iyL~~r~-l~~-G~i~ 72 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCYPELSVGSGRPTPSELKGTRR--IYLDDRP-LSD-GIIN 72 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-GGGTTTTT---SGGGTT-EE--EES-----GGG--S--
T ss_pred EEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecccccccccCCCCHHHHcccce--eeecccc-ccC-CCcC
Confidence 689999999999999999999987 8887776554444322233333222332233 7777532 211 0001
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhcccccccccc
Q 011578 326 DKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYG 404 (482)
Q Consensus 326 ~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 404 (482)
..+.....+..+...-+ +..+|+=.++-.-+..+. .++-....|. .+..++.|+.+.-..-.++..+++-.
T Consensus 73 a~ea~~~Li~~v~~~~~-~~~~IlEGGSISLl~~m~-~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~------ 144 (233)
T PF01745_consen 73 AEEAHERLISEVNSYSA-HGGLILEGGSISLLNCMA-QDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR------ 144 (233)
T ss_dssp HHHHHHHHHHHHHTTTT-SSEEEEEE--HHHHHHHH-H-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHhccc-cCceEEeCchHHHHHHHH-hcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC------
Confidence 12223333344433333 444444444444444443 3454444552 45556778876555544444444421
Q ss_pred ccccCcccHHHHHHHHHHH
Q 011578 405 FKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~ 423 (482)
...-....|.++..-.
T Consensus 145 ---p~~~~~Sll~EL~~lW 160 (233)
T PF01745_consen 145 ---PDSSGPSLLEELVALW 160 (233)
T ss_dssp -----SSS--HHHHHHHHH
T ss_pred ---CCCCCCcHHHHHHHHH
Confidence 1123456666666544
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00026 Score=63.33 Aligned_cols=118 Identities=11% Similarity=0.176 Sum_probs=59.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH--HcCCCCCC---------CeEEeeccccccc---ccccchhhHHHHHHhcC---
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY--MVGILPTD---------RVTEVQRTDLVGE---FVGHTGPKTRRRIKEAE--- 306 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~--~~~~~~~~---------~~~~~~~~~~~~~---~~g~~~~~~~~~~~~a~--- 306 (482)
.-+++.||+|+||||+.|.|+.... ..|..... -|......+-... .+......+.++++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 4678999999999999999997653 22321100 0111111111000 11111244666777654
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccc
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGF 367 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l 367 (482)
+.+|++||.-.-.. ......+...+++.+.+....+|++|........++..+.+
T Consensus 106 p~llllDEp~~glD------~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v 160 (199)
T cd03283 106 PVLFLLDEIFKGTN------SRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAV 160 (199)
T ss_pred CeEEEEecccCCCC------HHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCe
Confidence 58999999743221 11122334455555544345556655544443343333333
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00067 Score=67.66 Aligned_cols=249 Identities=19% Similarity=0.283 Sum_probs=131.7
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHH-HHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc----CC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV----GI 272 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~----~~ 272 (482)
+-+...+. .|.|++.+|+.|.-++- .+. +.-..|..+ ....++|+.|.|-|.||-|.|.+-+..... |-
T Consensus 293 dlLa~SLAPSI~GH~~vKkAillLLlGGvE---k~L~NGshl--RGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGR 367 (818)
T KOG0479|consen 293 DLLARSLAPSIYGHDYVKKAILLLLLGGVE---KNLENGSHL--RGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGR 367 (818)
T ss_pred HHHhhccCcccccHHHHHHHHHHHHhccce---eccCCCcee--ccceeEEEecCchHHHHHHHHHHHhcccccccccCC
Confidence 33333333 68999999998876431 111 111112222 234579999999999999999987754321 10
Q ss_pred CCCCCeEEeecccccccccccchhhHH-HHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE-----
Q 011578 273 LPTDRVTEVQRTDLVGEFVGHTGPKTR-RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV----- 346 (482)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----- 346 (482)
-+++ +.+.++--..+-.| ++++. ..+-.|..||+.|||+|++.-- .+-++.+ .|+.+.|
T Consensus 368 GSSG--VGLTAAVTtD~eTG--ERRLEAGAMVLADRGVVCIDEFDKMsDi--------DRvAIHE---VMEQqtVTIaKA 432 (818)
T KOG0479|consen 368 GSSG--VGLTAAVTTDQETG--ERRLEAGAMVLADRGVVCIDEFDKMSDI--------DRVAIHE---VMEQQTVTIAKA 432 (818)
T ss_pred CCCC--ccceeEEeeccccc--hhhhhcCceEEccCceEEehhcccccch--------hHHHHHH---HHhcceEEeEec
Confidence 0010 11111111111112 22221 2344567799999999999642 2233333 3444333
Q ss_pred -----------EEEEec--------CchhHHHHHhcCccccCCCcceeeC-CCCCHHHHH----HHHHHH--Hhcccc--
Q 011578 347 -----------VVIFAG--------YSEPMKRVIASNEGFCRRVTKFFHF-NDFNSEELA----KILHIK--MNNQTE-- 398 (482)
Q Consensus 347 -----------~vi~~~--------~~~~~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~----~il~~~--l~~~~~-- 398 (482)
++.+|+ +..|++ -+....+|++|||..|.+ ..-+.+.=. .+|+.+ +..-..
T Consensus 433 GIHasLNARCSVlAAANPvyG~Yd~~k~P~e-NIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dG 511 (818)
T KOG0479|consen 433 GIHASLNARCSVLAAANPVYGQYDQSKTPME-NIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDG 511 (818)
T ss_pred cchhhhccceeeeeecCccccccCCCCChhh-ccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCC
Confidence 333333 123332 223347788999876654 333322111 222222 100000
Q ss_pred -----c----------------------------------------------cccc-cccccCcccHHHHHHHHHHHhhH
Q 011578 399 -----D----------------------------------------------SLLY-GFKLHSSCSMDAIAALIEKETTE 426 (482)
Q Consensus 399 -----~----------------------------------------------~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 426 (482)
. ...| ..++.|.++.++...+++.|++.
T Consensus 512 e~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~L 591 (818)
T KOG0479|consen 512 EPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDL 591 (818)
T ss_pred CcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhh
Confidence 0 0000 11355777888888888877643
Q ss_pred h---------hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 427 K---------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 427 ~---------~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
+ ...+..+|.|..++..|...+..|++ ..++.+|-+.|++-+
T Consensus 592 R~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlS---------k~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 592 RNDDSRKDQERTSPITARTLETLIRLATAHAKARLS---------KVVEKDDAEAAVNLL 642 (818)
T ss_pred hccccccccccccCCcHHHHHHHHHHHHHHHHhhhc---------ceeehhhHHHHHHHH
Confidence 2 22345678999999999998888887 356777777776654
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=65.27 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.-+++.||+|||||++|.+++...
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999854
|
|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=7e-05 Score=67.47 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.+..+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 356699999999999999999974
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00016 Score=75.08 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=106.6
Q ss_pred HHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCch
Q 011578 299 RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSE 355 (482)
Q Consensus 299 ~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~ 355 (482)
...+.+|.+|||||||+..|....+ +.+|+.|..+ ++.+|+.++..
T Consensus 218 pGaVHkAngGVLiIdei~lL~~~~~-----------w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~ 286 (647)
T COG1067 218 PGAVHKANGGVLIIDEIGLLAQPLQ-----------WKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE 286 (647)
T ss_pred CcccccccCcEEEEEhhhhhCcHHH-----------HHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH
Confidence 3567889999999999999986443 5566665432 35888888888
Q ss_pred hHHHHHhcCccccCCCcceeeC--CCC-CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH---hhc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHF--NDF-NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQR 429 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~--~~~-~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~ 429 (482)
.+..+...+|.++.-|....+| +.| +++.+.+.++.+.+...+. .--+.++.+++.++.....+. ...
T Consensus 287 ~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d------~~ip~~~~~Av~~li~~a~R~Ag~~~~ 360 (647)
T COG1067 287 DLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARD------GNIPHLDKDAVEELIREAARRAGDQNK 360 (647)
T ss_pred HHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHHhccccce
Confidence 8877755555555544444444 555 5688888888888776531 112678999999988765532 222
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
-..+.|++.++|+.|.-.+ ..+....|+.+|+++|+++-.+
T Consensus 361 Ltl~~rdl~~lv~~A~~ia---------~~~~~~~I~ae~Ve~a~~~~~~ 401 (647)
T COG1067 361 LTLRLRDLGNLVREAGDIA---------VSEGRKLITAEDVEEALQKREL 401 (647)
T ss_pred eccCHHHHHHHHHHhhHHH---------hcCCcccCcHHHHHHHHHhhhh
Confidence 2457899999998776554 1223457999999999998543
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=63.90 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=22.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
-.+++||||+|||+++..++..+...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~ 29 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER 29 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc
Confidence 36789999999999999999887543
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0035 Score=61.69 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=46.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCC--CCCCeEEeecccc--------ccc------ccccchhhHHHHHHhc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--PTDRVTEVQRTDL--------VGE------FVGHTGPKTRRRIKEA 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--~~~~~~~~~~~~~--------~~~------~~g~~~~~~~~~~~~a 305 (482)
.+..++|.||+|+||||++..+|..+...... .+..++.+++-.. ..+ .+......+.+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45678999999999999999999877532111 1122333332110 011 1223334455555444
Q ss_pred C-CcEEEEeccccccc
Q 011578 306 E-GGILFVDEAYRLIP 320 (482)
Q Consensus 306 ~-~~vl~iDE~d~l~~ 320 (482)
. .-+|+||++.....
T Consensus 253 ~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK 268 (388)
T ss_pred CCCCEEEEcCCCCCcc
Confidence 3 47999999987753
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.002 Score=61.38 Aligned_cols=187 Identities=18% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc---------------ccccccch----hhHH---
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV---------------GEFVGHTG----PKTR--- 299 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~g~~~----~~~~--- 299 (482)
-|..+.++|.+|||||.+.|.+-+.++. +.+-+++-+.. ..+-|... .++.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i 101 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFI 101 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHH
Confidence 4566799999999999999999987744 33444433211 11112111 1111
Q ss_pred HHHHh---c--C--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC-
Q 011578 300 RRIKE---A--E--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV- 371 (482)
Q Consensus 300 ~~~~~---a--~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~- 371 (482)
..|++ + + .-+|++|.+|.+.-.. ...-..+-.|.+.+....+++++....-+..-. .+ .+-+
T Consensus 102 ~~l~q~~~~t~~d~~~~liLDnad~lrD~~-----a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~--~n---~g~~~ 171 (438)
T KOG2543|consen 102 YLLVQWPAATNRDQKVFLILDNADALRDMD-----AILLQCLFRLYELLNEPTIVIILSAPSCEKQYL--IN---TGTLE 171 (438)
T ss_pred HHHHhhHHhhccCceEEEEEcCHHhhhccc-----hHHHHHHHHHHHHhCCCceEEEEeccccHHHhh--cc---cCCCC
Confidence 22333 1 2 3578889999986321 111233334444455666666665333222211 11 1222
Q ss_pred cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 372 TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 372 ~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
...++||.|+.++..+|+.+-- + + ....+..+....-.+..-...-.+..+++.++..+..+...+
T Consensus 172 i~~l~fP~Ys~~e~~~Il~~~~---p------~-----~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~ep 237 (438)
T KOG2543|consen 172 IVVLHFPQYSVEETQVILSRDN---P------G-----KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEP 237 (438)
T ss_pred ceEEecCCCCHHHHHHHHhcCC---c------c-----ccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhccc
Confidence 4689999999999999997531 1 0 112222233333222222222235667777788887777777
Q ss_pred hcCCCCCh
Q 011578 452 LSFDCLDT 459 (482)
Q Consensus 452 ~~~~~~~~ 459 (482)
+..+.+++
T Consensus 238 i~~~~i~~ 245 (438)
T KOG2543|consen 238 ITKGKIDP 245 (438)
T ss_pred cccCCCCh
Confidence 76655443
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=65.47 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
....++|.||+|+||||++..||..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998764
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00043 Score=78.73 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=38.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++++|.+...+.+..++. ........+.++||+|+||||+|+++++.+..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~--------------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLH--------------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccccchHHHHHHHHHHHc--------------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 45678898887777776531 11234456889999999999999999987754
|
syringae 6; Provisional |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=70.66 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH-HHcCCCCCCCeEEeecccccccccccchhhHHHHHH-hcCCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~vl~iDE~d~l~ 319 (482)
...++++.||||||||.+|.+++... ...| -.++.+.++... .. +.+. -++..+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-------~f~T~a~Lf~~L----~~---~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-------GTITVAKLFYNI----ST---RQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-------CcCcHHHHHHHH----HH---HHHhhhccCCEEEEEcCCCCc
Confidence 55789999999999999999998872 2222 122333333221 11 2222 2345899999998876
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
-.++ ++.+..|...|++|
T Consensus 274 ~~~~-------~~~v~imK~yMesg 291 (449)
T TIGR02688 274 FAKP-------KELIGILKNYMESG 291 (449)
T ss_pred CCch-------HHHHHHHHHHHHhC
Confidence 5333 35677888888764
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0003 Score=62.52 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=21.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.-+.+.||+|||||++|-+.|-.+-..
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 358899999999999999999877543
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.3e-05 Score=62.55 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.9
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++.||||+||||+|+.||+.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 689999999999999999998853
|
... |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00035 Score=63.24 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=57.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--------c----cc-----------cc---h
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------F----VG-----------HT---G 295 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~g-----------~~---~ 295 (482)
...-++++||||+|||+++..++......+ ...+.++...+... + .+ +. -
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g----~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQG----KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 344578999999999999999988765432 23444444321000 0 00 00 1
Q ss_pred hhHHHHHHhcCCcEEEEecccccccCCCCCCCh----hHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 296 PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKD----YGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 296 ~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~----~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
..+.+.+......+|+||-+..+......+... ...+.+..|........+.+++++.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 112222333356899999999886422111111 1122233344444566777777753
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=62.98 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.|+||+||||+|+.|++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998764
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0033 Score=62.76 Aligned_cols=217 Identities=17% Similarity=0.181 Sum_probs=99.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH-HcCCCCCCCeEEeecccccc----------c-----cc----ccchhh-HHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVG----------E-----FV----GHTGPK-TRR 300 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~----------~-----~~----g~~~~~-~~~ 300 (482)
.|..++|.||||+||||++..+|..+. ..+. .+.-+++..... . ++ +..... ..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~----kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK----KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC----eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 456788999999999999999999874 2222 333333332110 1 01 111212 233
Q ss_pred HHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccC--CCcce
Q 011578 301 RIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCR--RVTKF 374 (482)
Q Consensus 301 ~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~--R~~~~ 374 (482)
.++.+ ..-+|+||=...+.. ++.....+..+...+....+++|+ +++........ ..+.. .++ -
T Consensus 174 al~~~~~~~~DvVIIDTaGr~~~------d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a---~~f~~~v~i~-g 243 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRLQI------DEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTA---KTFNERLGLT-G 243 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCcccc------CHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHH---HHHHhhCCCC-E
Confidence 44332 336899998766542 122233344444544444444444 44333322221 11222 222 2
Q ss_pred eeCCCCCHHHHHHHHHHHHhcccccccc--ccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 375 FHFNDFNSEELAKILHIKMNNQTEDSLL--YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
+-+..+|...+.-.+............+ .|-.+ .++..-.-+.++.. .....++..+++.|.......-
T Consensus 244 iIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i-~dl~~f~p~~~~~~--------iLg~gD~~~l~e~~~~~~~~~~ 314 (428)
T TIGR00959 244 VVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKI-DDLEPFHPERMASR--------ILGMGDILSLVEKAQEVVDEEE 314 (428)
T ss_pred EEEeCccCcccccHHHHHHHHHCcCEEEEeCCCCh-hhCccCCHHHHHHH--------HhCCCChHHHHHHHHHhhCHHH
Confidence 2244555333322222222222111111 12122 12111111222222 2235678888888766431110
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
.......-..-..|.+||.+-++.+++.|
T Consensus 315 ~~~~~~~~~~~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 315 AKKLAEKMKKGQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 00000000112689999999999999988
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=59.16 Aligned_cols=134 Identities=5% Similarity=-0.016 Sum_probs=87.9
Q ss_pred CceeEecCCC-CchHHHHHHHHHHHHHcCCCC--CCCeEEeeccccc---ccccccchhhHHHHHHh-------cCCcEE
Q 011578 244 PHMAFLGNPG-TGKTMVARILGRLLYMVGILP--TDRVTEVQRTDLV---GEFVGHTGPKTRRRIKE-------AEGGIL 310 (482)
Q Consensus 244 ~~~ll~GppG-tGKT~la~~la~~~~~~~~~~--~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~-------a~~~vl 310 (482)
...||.|..+ ++|..++.-+++.+...+... ...+..+.+..-. ++.+ +-..+|++.+. +...|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 4689999997 999999999998875432111 1223333322100 1112 12334444332 233799
Q ss_pred EEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 311 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 311 ~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
+|+++|.+.. .+.|.||..+|+ ...++|+ ++.+..+ .|.+++|+ ..+.|+.|...+-.+
T Consensus 94 II~~ae~mt~-----------~AANALLKtLEEPP~~t~fILit~~~~~L------LpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 94 IIYSAELMNL-----------NAANSCLKILEDAPKNSYIFLITSRAASI------ISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEechHHhCH-----------HHHHHHHHhhcCCCCCeEEEEEeCChhhC------chhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999987 555999999998 3344444 5333333 78899999 999999999988888
Q ss_pred HHHHHHhccc
Q 011578 388 ILHIKMNNQT 397 (482)
Q Consensus 388 il~~~l~~~~ 397 (482)
+...++....
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 8877766543
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=63.76 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (482)
++++.||||+||||+|+.||+.++ +..++..+++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---------~~~is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---------MVQLSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---------CeEEeCcHHHHHH
Confidence 589999999999999999998764 3456666665543
|
|
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00042 Score=63.23 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+++.||||+||||+|+.||+.++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998754
|
|
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=62.62 Aligned_cols=52 Identities=31% Similarity=0.413 Sum_probs=38.3
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
++.|+++..+++.+++...- .+. + ..-.-++|.||+|+|||++++.|-+-+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA-------~g~--~-~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAA-------QGL--E-ERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccCcHHHHHHHHHHHHHHH-------hcc--C-ccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999988887643321 111 1 1334578999999999999999998775
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00042 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++++||+|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 6899999999999999999888764
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00027 Score=63.05 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=13.5
Q ss_pred CCcEEEEecccccccCCCC
Q 011578 306 EGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~ 324 (482)
.+++|+|||+..+.+++..
T Consensus 79 ~~~liviDEa~~~~~~r~~ 97 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSW 97 (193)
T ss_dssp TT-EEEETTGGGTSB---T
T ss_pred CCcEEEEECChhhcCCCcc
Confidence 5799999999999998774
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00017 Score=69.75 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.......+++||||+|||++++.|++.+..
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 345667899999999999999999998865
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00071 Score=66.38 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=63.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------ccc----------c-chhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~------~~g----------~-~~~~~~~~~~~ 304 (482)
+..-++++||||+|||+++..+|..+...+ .+++.++..+...+ .+| + .-..+.+.++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g----~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 445688999999999999999998775422 24444443321111 111 1 11223344444
Q ss_pred cCCcEEEEecccccccCCCCC-C--ChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 305 AEGGILFVDEAYRLIPMQKAD-D--KDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 305 a~~~vl~iDE~d~l~~~~~~~-~--~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
....+|+||++..+......+ . ....++.+..|........+.+++++
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 567999999999886533211 1 22345666777777766666666654
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00065 Score=60.12 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeec-ccccccccccch-------------hh---HHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQR-TDLVGEFVGHTG-------------PK---TRRRIK 303 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~-~~~~~~~~g~~~-------------~~---~~~~~~ 303 (482)
...+.|+.|||||||||+.|-||+.+... .-.....+.-++. +++.+-..|.-+ .+ +-.+++
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 44678999999999999999999988541 1112223333333 344443333311 11 122344
Q ss_pred hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCcccc
Q 011578 304 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFC 368 (482)
Q Consensus 304 ~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~ 368 (482)
.-.+-|+++|||..... ..++++.+..|- -+|.+.+-+.++.+.. +|.|.
T Consensus 216 sm~PEViIvDEIGt~~d-------------~~A~~ta~~~GV-kli~TaHG~~iedl~k-rp~lk 265 (308)
T COG3854 216 SMSPEVIIVDEIGTEED-------------ALAILTALHAGV-KLITTAHGNGIEDLIK-RPTLK 265 (308)
T ss_pred hcCCcEEEEeccccHHH-------------HHHHHHHHhcCc-EEEEeeccccHHHhhc-ChhHH
Confidence 55668999999965431 245666665554 4556656666655532 34443
|
|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00038 Score=63.96 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=30.9
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
...+..+++.||||+||||+|+.||+.++. ..++.++++.+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~---------~his~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF---------KHLSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCC---------eEEEccHHHHH
Confidence 334566889999999999999999997743 45666665543
|
|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00011 Score=64.27 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=25.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..++|+||||||||++|+.||+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999998864
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00039 Score=60.54 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++..+++.|+||+|||++|+.|++.++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45667889999999999999999997653
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00065 Score=58.89 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----------------ccccchhhHHHHHHhc-CC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----------------FVGHTGPKTRRRIKEA-EG 307 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~a-~~ 307 (482)
+++.|+||+|||++|..++...+ .+.+.+....-.+. ...+....+.+.++.. ..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-------~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-------GPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-------CCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 57899999999999999987522 24444443321110 1223455667777554 45
Q ss_pred cEEEEecccccccCCCCCCC----hhHHHHHHHHHhhhcCCcEEEEEe
Q 011578 308 GILFVDEAYRLIPMQKADDK----DYGIEALEEIMSVMDGGKVVVIFA 351 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~vi~~ 351 (482)
.+|+||=+..+....-..+. +...+.+..|+..+......+|+.
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viV 122 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILV 122 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEE
Confidence 79999998877654332211 223455677888876644433333
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0008 Score=67.95 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=63.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc------ccc-----------chhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF------VGH-----------TGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~-----------~~~~~~~~~~~ 304 (482)
+..-++++||||+|||+++..++...... ..+++.++..+...+. +|. .-..+.+.+++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~----g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA----GGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 44468899999999999999999877532 2245555543322111 111 11223333444
Q ss_pred cCCcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 305 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 305 a~~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
....+|+||++..+....-.+ +....++.+..|.....+..+.+++++
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 466899999999886543211 122334566677777666565555553
|
|
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00036 Score=60.64 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=55.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----------------c-cccchhhHHHHHHh--c
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------------F-VGHTGPKTRRRIKE--A 305 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~g~~~~~~~~~~~~--a 305 (482)
.+++.||||+|||++|..++..++. +++.+........ | .-+....+.++++. .
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 4789999999999999999987542 2333332221100 1 11222345556654 2
Q ss_pred CCcEEEEecccccccCCCCCCC-hhHHHHHHHHHhhhcCCc
Q 011578 306 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~-~~~~~~~~~ll~~l~~~~ 345 (482)
.+.+++||=+..+....-..+. +.....+..|+..+....
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~ 116 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLP 116 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCC
Confidence 3578999988877553321111 233455677788876644
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00066 Score=66.71 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=21.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999988
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00025 Score=65.01 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
+...+++.||||+||+|+|+.||+.++ +..++..+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~---------~~his~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYC---------LCHLATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcC---------CcEEchhHHHHH
Confidence 456799999999999999999999774 345555555443
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=58.12 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=57.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH--cCCCCCCCeEEeec----------cc----ccccccccchhhHHHHHHhc-C
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM--VGILPTDRVTEVQR----------TD----LVGEFVGHTGPKTRRRIKEA-E 306 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~--~~~~~~~~~~~~~~----------~~----~~~~~~g~~~~~~~~~~~~a-~ 306 (482)
.-+++.||+|+|||++.+.++..... .|.........+.. .+ -.+.+.++ -+.+..++..+ +
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e-~~~~~~il~~~~~ 108 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE-MSETAYILDYADG 108 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHH-HHHHHHHHHhcCC
Confidence 45899999999999999999865432 22211111111111 00 01111111 12344455554 5
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHh
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 362 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~ 362 (482)
+.++++||+.+=.. ......+...+++.+.+....++++|+...+...+.
T Consensus 109 ~~lvllDE~~~gt~------~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 109 DSLVLIDELGRGTS------SADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CcEEEeccccCCCC------HHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 69999999853221 112223334555555544556666766555544443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=57.13 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH--HcCCCCCCC----------eEEeeccccccccccc---chhhHHHHHHhc-C
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDR----------VTEVQRTDLVGEFVGH---TGPKTRRRIKEA-E 306 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~g~---~~~~~~~~~~~a-~ 306 (482)
...++++||.|+|||++.+.++.... ..|...... +..+...+.....++. ....+..++..+ .
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 34689999999999999999994331 222111111 1111111111222222 222333444433 4
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
+.++++||...-... .....+...+++.+......+|++|+.......
T Consensus 109 ~~llllDEp~~gld~------~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 109 RSLVLIDELGRGTST------AEGLAIAYAVLEHLLEKGCRTLFATHFHELADL 156 (202)
T ss_pred CeEEEEecCCCCCCH------HHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 599999998543221 112234455555554434455556554444333
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00022 Score=65.85 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.7
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
......++++||+|+|||++++.+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346678999999999999999999987753
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0025 Score=57.68 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..++++||.|+|||++.|.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 56899999999999999999953
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=59.27 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-+++.||+|+||||+++++...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999988763
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00098 Score=71.44 Aligned_cols=88 Identities=24% Similarity=0.266 Sum_probs=53.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccccchhhHHHHHHh-------------cC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIKE-------------AE 306 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~-------------a~ 306 (482)
..+++.|+||||||++++++...+...+. ..++.-+.++.-. .+..|.....+.+.+.. ..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~--~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~ 416 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG--LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPID 416 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcccc
Confidence 46889999999999999999998875431 0134444443211 12223222233333321 13
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
..+|+|||+.++.. ..+..|+..+..+
T Consensus 417 ~~llIvDEaSMvd~-----------~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 417 CDLLIVDESSMMDT-----------WLALSLLAALPDH 443 (720)
T ss_pred CCEEEEeccccCCH-----------HHHHHHHHhCCCC
Confidence 47999999988865 4457777777654
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0021 Score=57.33 Aligned_cols=104 Identities=17% Similarity=0.262 Sum_probs=57.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc--------ccccc------c---ch-hhHHHHHHh
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--------GEFVG------H---TG-PKTRRRIKE 304 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g------~---~~-~~~~~~~~~ 304 (482)
|..++|.||+|+||||.+-.||..+... ..+..++..+..... .+..| . .. ....+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3468899999999999999999988754 222233433322110 01111 1 11 223344443
Q ss_pred c---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 305 A---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 305 a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
. ..-+||||-..+... +....+-+..+++.+...++.+++..+.
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~------d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPR------DEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp HHHTTSSEEEEEE-SSSST------HHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred HhhcCCCEEEEecCCcchh------hHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 2 236999998754432 1222344566666776666766666443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00021 Score=62.28 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=23.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+|||++++.||+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998876
|
|
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00089 Score=64.07 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|+||||+|||++++.|++.++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999997743
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0002 Score=63.19 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=23.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.|+||+||||+++.||+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998865
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.002 Score=71.63 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=81.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccc-cccchhhH----HHHHH-hcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEF-VGHTGPKT----RRRIK-EAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~------~~~~~-~g~~~~~~----~~~~~-~a~~~v 309 (482)
..++++|.|.||+|||++..++|+..+. .++.++.++ +++.+ .++.+... ...+. ...|+-
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~-------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~W 1614 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGK-------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGW 1614 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcC-------ceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCE
Confidence 3467999999999999999999998876 777777764 33332 22211111 11222 235689
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhc-----------C-----CcEEEEEecCchhHH---HHHhcCccccCC
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-----------G-----GKVVVIFAGYSEPMK---RVIASNEGFCRR 370 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~-----------~-----~~~~vi~~~~~~~~~---~~~~~~~~l~~R 370 (482)
+++||+.-... .++.-|-..+| . ..+.|++|-++...- .. .+..+..|
T Consensus 1615 VlLDEiNLaSQ-----------SVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKg--LPkSF~nR 1681 (4600)
T COG5271 1615 VLLDEINLASQ-----------SVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKG--LPKSFLNR 1681 (4600)
T ss_pred EEeehhhhhHH-----------HHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCccc--CCHHHhhh
Confidence 99999954332 33333333333 1 335666664333211 11 13567789
Q ss_pred CcceeeCCCCCHHHHHHHHHHHH
Q 011578 371 VTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 371 ~~~~i~~~~~~~~~~~~il~~~l 393 (482)
| .++.+..++.+++..|+..+.
T Consensus 1682 F-svV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1682 F-SVVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred h-heEEecccccchHHHHHHhhC
Confidence 9 888899999999998887654
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0025 Score=58.49 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+++.||||||||++|..++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999986655544
|
|
| >PLN02459 probable adenylate kinase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=61.10 Aligned_cols=38 Identities=42% Similarity=0.586 Sum_probs=29.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
.+..++|.||||+||||+|+.||+.++ +..++..+++.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~---------~~~is~gdllR 65 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLG---------VPHIATGDLVR 65 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC---------CcEEeCcHHHH
Confidence 445689999999999999999999774 34555555543
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=57.95 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
++.-++|.||||+|||++++.|.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45568899999999999999998754
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00048 Score=59.80 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.-++++|+||+||||+|+.|++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999977
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.006 Score=55.74 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=56.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc----cccc----------c-----c---c-cc-hh
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGE----------F-----V---G-HT-GP 296 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~----~~~~----------~-----~---g-~~-~~ 296 (482)
.+..-+++.|+||+|||+++-.++......|. +.+.++..+ +... + + . .+ ..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge----~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGR----TGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHH
Confidence 34456889999999999999998876643221 222222111 0000 0 0 0 01 11
Q ss_pred hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 297 KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 297 ~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.+..+.......+|+||=+..+..... ..+ ....+..|.....+..+.+|+++.
T Consensus 138 ii~~l~~~~~~~lVVIDsLq~l~~~~~--~~e-l~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 138 IIARLASAPRGTLVVIDYLQLLDQRRE--KPD-LSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HHHHHHHhhCCCEEEEEcHHHHhhccc--chh-HHHHHHHHHHHHHhCCCeEEEEec
Confidence 233344434568999998877743222 122 233344555555565666666643
|
|
| >PLN02840 tRNA dimethylallyltransferase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.002 Score=63.47 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc-cccchhhHHHHHHhcCCcEEEEecccccccC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF-VGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~ 321 (482)
...+++.||+|+|||++|..||+.++. .++..+...+...+ +| +.+...+ +.+.-.=-|||-++ +.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~-------~iis~Ds~qvYr~~~Ig-TaKpt~e--E~~~V~Hhlidil~---p~ 87 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG-------EIISADSVQVYRGLDVG-SAKPSLS--ERKEVPHHLIDILH---PS 87 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC-------CeEeccccceecceeEE-cCCCCHH--HHcCCCeEeEeecC---CC
Confidence 345889999999999999999998754 45554433222111 11 1111111 11111223444443 22
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
...+-..+...+...+-...+.|++.||+.+|.--+..+
T Consensus 88 e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aL 126 (421)
T PLN02840 88 DDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWY 126 (421)
T ss_pred CceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHH
Confidence 222334566677666666777788877777665555444
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00081 Score=49.69 Aligned_cols=25 Identities=44% Similarity=0.676 Sum_probs=18.1
Q ss_pred CceeEecCCCCchH-HHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKT-MVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT-~la~~la~~~~ 268 (482)
..+++.|||||||| ++++.++..+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34666999999999 56666666553
|
|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00027 Score=61.77 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++.|+||||||++|+.||+.++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999976
|
|
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=64.34 Aligned_cols=119 Identities=21% Similarity=0.216 Sum_probs=68.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---CCcEEEEecccccccC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM 321 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~ 321 (482)
-++++||-+|||||+.+.+.+.+.. ..+.++..++......- ......+... +...||||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~-------~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE-------EIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc-------ceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh-
Confidence 7889999999999999777774432 24555555543332211 1111222222 337999999987642
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcE-EEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~-~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
... .+-...|.+.. +++.++ +..+. .....+.|.+|. ..+.+.|++-.|...
T Consensus 109 --------W~~---~lk~l~d~~~~~v~itgs-ss~ll-~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 --------WER---ALKYLYDRGNLDVLITGS-SSSLL-SKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --------HHH---HHHHHHccccceEEEECC-chhhh-ccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 123 33334444442 333332 22221 112246678885 888999999888854
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0061 Score=58.86 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+.-++|.||||+||||++..+|..+...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999886543
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00027 Score=58.03 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+++|++|-|||||||++..||..++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 3568999999999999999999987754
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.025 Score=55.19 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc--c---cc---------ccccchhhHHHHHHhcC-
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--V---GE---------FVGHTGPKTRRRIKEAE- 306 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--~---~~---------~~g~~~~~~~~~~~~a~- 306 (482)
.+..++|.||+|+||||++..||..+...+. +..++..+.-.. . .. ++..+...+.+.+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk--kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK--TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 3567899999999999999999998864332 112232222110 0 01 11234555555554432
Q ss_pred ---CcEEEEecccccc
Q 011578 307 ---GGILFVDEAYRLI 319 (482)
Q Consensus 307 ---~~vl~iDE~d~l~ 319 (482)
.-+||||-..+..
T Consensus 318 ~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 318 EARVDYILIDTAGKNY 333 (436)
T ss_pred ccCCCEEEEeCccccC
Confidence 4799999876654
|
|
| >PRK14529 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=59.60 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.||||+||||+++.|++.++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999998865
|
|
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00053 Score=64.80 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE--eecccccccccccchhhHHHHH-Hh-cCCcEEEEecc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLVGEFVGHTGPKTRRRI-KE-AEGGILFVDEA 315 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~-~~-a~~~vl~iDE~ 315 (482)
...+.++.|||+-|+|||+|.-.....+..... ....|.. .....-.....|++.. +..+- +- +..-||.|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k-~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERK-RRLHFHRFMARVHQRLHTLQGQTDP-LPPIADELAAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCcccc-ccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHhcCCEEEeeee
Confidence 457789999999999999999988886643110 0111100 0000111223355421 22221 11 23479999998
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchh
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 356 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~ 356 (482)
.-=-. ..--++..|++.|=...|++|+|++..|
T Consensus 140 ~VtDI--------~DAMiL~rL~~~Lf~~GV~lvaTSN~~P 172 (367)
T COG1485 140 EVTDI--------ADAMILGRLLEALFARGVVLVATSNTAP 172 (367)
T ss_pred eecCh--------HHHHHHHHHHHHHHHCCcEEEEeCCCCh
Confidence 53221 1125677888877666677777765444
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00048 Score=56.71 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+...++|.|+.|+|||+++|.+++.++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~ 50 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQG 50 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCC
Confidence 445688999999999999999999887543
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00032 Score=62.05 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=27.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
++++||||+||||+|+.||+.++ +..++.++++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~---------~~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG---------FTHLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---------CeEEECChHHHH
Confidence 68999999999999999999774 355666665543
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.003 Score=58.25 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.....++++||||+|||+++..++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345568899999999999999997654
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0036 Score=64.82 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=42.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-C-CCeEEeecccccccc--cccchhhHHHHHHhcCCcEEEEecccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-T-DRVTEVQRTDLVGEF--VGHTGPKTRRRIKEAEGGILFVDEAYR 317 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-~-~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~a~~~vl~iDE~d~ 317 (482)
...+++++||||+||||++++++..+...+... + ..-.++.....+.+| .+.......+.+-..++-+|++||+-.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 346799999999999999999999886433110 0 000011111122222 111112222333345689999999953
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00027 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.8
Q ss_pred eeEecCCCCchHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~ 268 (482)
+++.||||+||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998664
|
... |
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0032 Score=60.19 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=58.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccc------------cch---hhHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVG------------HTG---PKTRRRI 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g------------~~~---~~~~~~~ 302 (482)
+..-++++||||||||+||-.++......+ +.++.++...... +.+| ..+ ..+..++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g----~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAG----GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC----CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 344578999999999999998877665432 2444443321100 0001 011 1122223
Q ss_pred HhcCCcEEEEecccccccCCC--CC--CC--hhHH----HHHHHHHhhhcCCcEEEEEec
Q 011578 303 KEAEGGILFVDEAYRLIPMQK--AD--DK--DYGI----EALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~~~~--~~--~~--~~~~----~~~~~ll~~l~~~~~~vi~~~ 352 (482)
++....+|+||-+..+.+... +. +. .... +.+..|...+....+.+|+++
T Consensus 130 ~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 333458999999999886422 11 11 1111 344555555666777777774
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00036 Score=59.70 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++++||||+|||++|+.||+.++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998865
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00097 Score=60.63 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++++||||+||||+|+.||+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998754
|
|
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00034 Score=58.40 Aligned_cols=24 Identities=46% Similarity=0.648 Sum_probs=22.2
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+-+.|||||||||+|+.||+.++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 568899999999999999999976
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0059 Score=54.02 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred eeEecCCCCchHHHHHHHHHHHH--HcCCCCCCCeEEeecc----------ccccccccc---chhhHHHHHHhc-CCcE
Q 011578 246 MAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVTEVQRT----------DLVGEFVGH---TGPKTRRRIKEA-EGGI 309 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~g~---~~~~~~~~~~~a-~~~v 309 (482)
++++||.|.|||++.|.++-... ..|......-..+... +...+..+. .-..+..++..+ .+.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999994332 2222111111111111 111111111 112233444443 5589
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHHH
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVI 361 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~~ 361 (482)
+++||...-.. ......+...+++.+.+ ....++++|+...+....
T Consensus 82 lllDEp~~g~d------~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 82 VLLDELGRGTS------TYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA 128 (185)
T ss_pred EEEecCCCCCC------HHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence 99999854332 12233444566665543 234455555544554443
|
|
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00049 Score=60.42 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=32.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 293 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 293 (482)
++..++|.|++|+|||++++.||+.++. +|+. ...+..+..|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD--~D~~ie~~~g~ 51 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML-------HFID--TDRYIERVTGK 51 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE--CCHHHHHHHhC
Confidence 5678999999999999999999998876 6664 33444444443
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0039 Score=55.96 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.++|+||.|+|||++.|.++.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 599999999999999999983
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0018 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-+.+.|+||+||||+|+.|+..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577889999999999999998764
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0005 Score=49.89 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.4
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999977
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0021 Score=56.95 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
....+++.||+|+||||+.++++..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999998664
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0039 Score=57.11 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=61.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeecccccc-----------------------------cc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVG-----------------------------EF 290 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------~~ 290 (482)
.....+++.||||||||+++..++...... +. +.+.++..+-.. ..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 345668999999999999999877544322 21 333333322100 00
Q ss_pred -------cccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 291 -------VGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 291 -------~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
+.+-...+.+.++..+..+++||-+..+.. . .+....+..+..|...+.+..++++++.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~--~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-Y--DDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-S--SSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-c--CCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 001123344555666679999999998822 1 1234455677888888876555555543
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0046 Score=57.88 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++++.||||+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998664
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0098 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45568899999999999999999754
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0088 Score=56.03 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=53.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee-ccccc-----ccccc-cchhhHHHHHHh---cCCcEEEE
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ-RTDLV-----GEFVG-HTGPKTRRRIKE---AEGGILFV 312 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~g-~~~~~~~~~~~~---a~~~vl~i 312 (482)
...+++.||+|+||||+.+++...+.... ..++.+. +.++. .-.+. +.+....+.++. ..+-+|+|
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~----~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~v 155 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPE----KNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMV 155 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCC----CeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEe
Confidence 34589999999999999999987664211 1222221 11111 00111 111122233332 35689999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
+|+..- +....+++....|.. ++.|.+.+..
T Consensus 156 gEiR~~-------------e~a~~~~~aa~tGh~-v~tTlHa~~~ 186 (264)
T cd01129 156 GEIRDA-------------ETAEIAVQAALTGHL-VLSTLHTNDA 186 (264)
T ss_pred ccCCCH-------------HHHHHHHHHHHcCCc-EEEEeccCCH
Confidence 999532 333566777777776 4555444443
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0072 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.......+.+.||+|+||||+.|+|..
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 344556788999999999999999975
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00048 Score=56.80 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.5
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
|++.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999986
|
... |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00086 Score=65.36 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=26.1
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.......+++.||||+|||++++.+++.+..
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 3446667999999999999999999997754
|
Members of this family differ in the specificity of RNA binding. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00039 Score=60.49 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=23.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++.||||+|||++++.||+.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998875
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00066 Score=59.95 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=31.2
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
++|.++..+++...+. . .....+..++++||||+|||++.+.+...+...
T Consensus 2 fvgR~~e~~~l~~~l~-~------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4677777777776532 1 223456789999999999999999999988764
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0022 Score=69.08 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=45.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccccchhhHHHHH---Hh-----cCCcEEE
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGHTGPKTRRRI---KE-----AEGGILF 311 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~---~~-----a~~~vl~ 311 (482)
.-+++.|+||||||++++++...+...+. .++.+.++....+ ..|.....+...+ .. ....+|+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~----~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGY----RVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCC----eEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence 45789999999999999999887765442 4555555433222 2232222232221 11 2347999
Q ss_pred Eeccccccc
Q 011578 312 VDEAYRLIP 320 (482)
Q Consensus 312 iDE~d~l~~ 320 (482)
|||+-++..
T Consensus 445 vDEasMv~~ 453 (744)
T TIGR02768 445 IDEAGMVGS 453 (744)
T ss_pred EECcccCCH
Confidence 999988765
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0014 Score=59.39 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++.||||+||||+|+.||+.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999987643
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >smart00072 GuKc Guanylate kinase homologues | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=52.14 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.||||+||+++++.|....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999864
|
Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0054 Score=68.44 Aligned_cols=130 Identities=22% Similarity=0.338 Sum_probs=84.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccccccchhhH---HHHHHhc--CCcEE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKT---RRRIKEA--EGGIL 310 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~---~~~~~~a--~~~vl 310 (482)
...++|+.||.-+|||++...+|++.+. .|+.++..+ .++.|+......+ ..++-.| +|--|
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh-------kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWI 959 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGH-------KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWI 959 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCc-------cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEE
Confidence 4457999999999999999999998876 788887653 3344443321111 1222222 45678
Q ss_pred EEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHH----HHHhcCccccCCC
Q 011578 311 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK----RVIASNEGFCRRV 371 (482)
Q Consensus 311 ~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~----~~~~~~~~l~~R~ 371 (482)
++||..-... .++.+|-..+|+++ -+.++||.+.|.- ..+ ..|++.||
T Consensus 960 VLDELNLApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~L--SrAFRNRF 1026 (4600)
T COG5271 960 VLDELNLAPT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGL--SRAFRNRF 1026 (4600)
T ss_pred EeeccccCcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHH--HHHHHhhh
Confidence 8899854333 56666666666532 1344444332211 111 46788899
Q ss_pred cceeeCCCCCHHHHHHHHHHH
Q 011578 372 TKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 372 ~~~i~~~~~~~~~~~~il~~~ 392 (482)
..++|..-..+|+..|++..
T Consensus 1027 -lE~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1027 -LEMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred -HhhhcccCcHHHHHHHHhcc
Confidence 88999999999999999754
|
|
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00044 Score=59.17 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=24.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++|.|++|+||||+.+.||+.++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 57999999999999999999999987
|
|
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00046 Score=60.52 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.-++|.||||+||||+|+.|++.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35889999999999999999998754
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0052 Score=67.38 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=51.8
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----cccchhhHHHHHHh--------cCCcEEEE
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VGHTGPKTRRRIKE--------AEGGILFV 312 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~--------a~~~vl~i 312 (482)
-+++.|+||||||++.+++...+...+. .++.+.++....+- .|-....+...+.. ....||+|
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~----~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIV 439 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGY----EVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVI 439 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEE
Confidence 5779999999999999988877765443 45555554432222 23223333333321 13369999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcC
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDG 343 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~ 343 (482)
||+-++.. +.+..|+.....
T Consensus 440 DEASMv~~-----------~~m~~LL~~a~~ 459 (988)
T PRK13889 440 DEAGMVGT-----------RQLERVLSHAAD 459 (988)
T ss_pred ECcccCCH-----------HHHHHHHHhhhh
Confidence 99988765 344666665544
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.014 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...++.||.|+|||++.++++-.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357889999999999999998876654
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0012 Score=37.78 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=10.3
Q ss_pred CChHHHHHHhCCcHHHHHHHHc
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLE 69 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~ 69 (482)
|.||+|+|+..++.+++++|++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~ 23 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLD 23 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444444444444
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >TIGR00174 miaA tRNA isopentenyltransferase (miaA) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0038 Score=58.75 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=55.3
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc-cccchhhHHHHHHhcCCcEEEEecccccccCCCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF-VGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~ 324 (482)
+++.||+|+|||++|..||+.++. .++.++...+...+ +| |.+...+-.+.. .=-|+|-++ +....
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~-------~iis~Ds~qvY~~l~Ig-Takp~~~e~~~v--~hhlid~~~---~~~~~ 68 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNA-------EIISVDSMQIYKGMDIG-TAKPSLQEREGI--PHHLIDILD---PSESY 68 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC-------cEEEechhheeeecccc-CCCCCHHHHcCc--cEEEEEEec---hhheE
Confidence 678999999999999999997743 55555543332221 11 111111111111 223444322 11112
Q ss_pred CCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 325 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
+-.++...+...+-+.++.|++.|++.+|.--+..+
T Consensus 69 ~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~al 104 (287)
T TIGR00174 69 SAADFQTLALNAIADITARGKIPLLVGGTGLYLKAL 104 (287)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHH
Confidence 224455566666666677788777766655544444
|
Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. |
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0016 Score=60.73 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHc
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
++|.|+||+||||+|+.|++.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999988753
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=53.75 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH--HHcCCCCCCCeEEeecc----------ccccc---ccccchhhHHHHHHhc-
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL--YMVGILPTDRVTEVQRT----------DLVGE---FVGHTGPKTRRRIKEA- 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~----------~~~~~---~~g~~~~~~~~~~~~a- 305 (482)
....+++.||.|+|||++.+.++... ...|....+.-..+..- +-... .+...-..+..+++.+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 34568999999999999999999832 22222111111111111 11100 1222234455667765
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
...+++|||+.+=... ..+..+...+++.+.+ ....+|++|....+..+
T Consensus 110 ~~sLvllDE~~~gT~~------~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 110 SRSLVILDELGRGTST------HDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred CCeEEEEccCCCCCCh------hhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 4599999998543221 1122222344444433 24556666665554444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.004 Score=54.78 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=18.9
Q ss_pred eeEecCCCCchHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~ 265 (482)
+.++|+||+||||+++.+++
T Consensus 2 i~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999998
|
7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis. |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=59.35 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.6
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
+++.|+||+|||++.+.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999864
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00064 Score=60.09 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++++||||+||||+++.||+.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 482 | ||||
| 3syl_A | 309 | Crystal Structure Of The Aaa+ Protein Cbbx, Native | 2e-35 | ||
| 3zuh_A | 289 | Negative Stain Em Map Of The Aaa Protein Cbbx, A Re | 2e-35 | ||
| 3syk_A | 309 | Crystal Structure Of The Aaa+ Protein Cbbx, Selenom | 3e-33 | ||
| 1n0r_A | 126 | 4ank: A Designed Ankyrin Repeat Protein With Four I | 6e-18 | ||
| 2p2c_P | 169 | Inhibition Of Caspase-2 By A Designed Ankyrin Repea | 6e-17 | ||
| 2p2c_P | 169 | Inhibition Of Caspase-2 By A Designed Ankyrin Repea | 2e-07 | ||
| 2j8s_D | 169 | Drug Export Pathway Of Multidrug Exporter Acrb Reve | 7e-16 | ||
| 2j8s_D | 169 | Drug Export Pathway Of Multidrug Exporter Acrb Reve | 2e-05 | ||
| 4gmr_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 6e-15 | ||
| 4gmr_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 2e-07 | ||
| 1mj0_A | 166 | Sank E3_5: An Artificial Ankyrin Repeat Protein Len | 8e-15 | ||
| 1mj0_A | 166 | Sank E3_5: An Artificial Ankyrin Repeat Protein Len | 4e-07 | ||
| 4hqd_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 1e-14 | ||
| 4hqd_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 1e-06 | ||
| 3nog_D | 169 | Designed Ankyrin Repeat Protein (Darpin) Binders To | 3e-14 | ||
| 3nog_D | 169 | Designed Ankyrin Repeat Protein (Darpin) Binders To | 3e-06 | ||
| 1svx_A | 169 | Crystal Structure Of A Designed Selected Ankyrin Re | 3e-14 | ||
| 1svx_A | 169 | Crystal Structure Of A Designed Selected Ankyrin Re | 5e-07 | ||
| 3noc_D | 169 | Designed Ankyrin Repeat Protein (Darpin) Binders To | 4e-14 | ||
| 3noc_D | 169 | Designed Ankyrin Repeat Protein (Darpin) Binders To | 2e-06 | ||
| 2bkg_A | 166 | Crystal Structure Of E3_19 An Designed Ankyrin Repe | 7e-14 | ||
| 2bkg_A | 166 | Crystal Structure Of E3_19 An Designed Ankyrin Repe | 1e-05 | ||
| 4gpm_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 8e-14 | ||
| 4hb5_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 9e-14 | ||
| 4hb5_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 9e-06 | ||
| 2xeh_A | 157 | Structural Determinants For Improved Thermal Stabil | 2e-13 | ||
| 2xeh_A | 157 | Structural Determinants For Improved Thermal Stabil | 3e-11 | ||
| 2xee_A | 157 | Structural Determinants For Improved Thermal Stabil | 2e-13 | ||
| 2xee_A | 157 | Structural Determinants For Improved Thermal Stabil | 5e-08 | ||
| 1n0q_A | 93 | 3ank: A Designed Ankyrin Repeat Protein With Three | 2e-13 | ||
| 3zu7_B | 169 | Crystal Structure Of A Designed Selected Ankyrin Re | 2e-13 | ||
| 3zu7_B | 169 | Crystal Structure Of A Designed Selected Ankyrin Re | 2e-08 | ||
| 4drx_E | 169 | Gtp-Tubulin In Complex With A Darpin Length = 169 | 3e-13 | ||
| 4drx_E | 169 | Gtp-Tubulin In Complex With A Darpin Length = 169 | 2e-07 | ||
| 4dui_A | 169 | Darpin D1 Binding To Tubulin Beta Chain (not In Com | 4e-13 | ||
| 4dui_A | 169 | Darpin D1 Binding To Tubulin Beta Chain (not In Com | 1e-07 | ||
| 4atz_D | 154 | Ad5 Knob In Complex With A Designed Ankyrin Repeat | 4e-13 | ||
| 4atz_D | 154 | Ad5 Knob In Complex With A Designed Ankyrin Repeat | 9e-05 | ||
| 2qyj_A | 166 | Crystal Structure Of A Designed Full Consensus Anky | 5e-13 | ||
| 2qyj_A | 166 | Crystal Structure Of A Designed Full Consensus Anky | 4e-08 | ||
| 4f6r_D | 169 | Tubulin:stathmin-Like Domain Complex Length = 169 | 1e-12 | ||
| 4f6r_D | 169 | Tubulin:stathmin-Like Domain Complex Length = 169 | 3e-06 | ||
| 2bkk_B | 169 | Crystal Structure Of Aminoglycoside Phosphotransfer | 1e-12 | ||
| 2bkk_B | 169 | Crystal Structure Of Aminoglycoside Phosphotransfer | 2e-06 | ||
| 2v5q_C | 167 | Crystal Structure Of Wild-type Plk-1 Kinase Domain | 1e-12 | ||
| 2v5q_C | 167 | Crystal Structure Of Wild-type Plk-1 Kinase Domain | 2e-10 | ||
| 3twq_A | 175 | Crystal Structure Of Arc4 From Human Tankyrase 2 (A | 3e-12 | ||
| 3twq_A | 175 | Crystal Structure Of Arc4 From Human Tankyrase 2 (A | 7e-05 | ||
| 3twu_A | 167 | Crystal Structure Of Arc4 From Human Tankyrase 2 In | 3e-12 | ||
| 3twu_A | 167 | Crystal Structure Of Arc4 From Human Tankyrase 2 In | 8e-05 | ||
| 3twr_A | 165 | Crystal Structure Of Arc4 From Human Tankyrase 2 In | 4e-12 | ||
| 3twr_A | 165 | Crystal Structure Of Arc4 From Human Tankyrase 2 In | 8e-05 | ||
| 3q9u_C | 158 | In Silico And In Vitro Co-Evolution Of A High Affin | 4e-12 | ||
| 1n11_A | 437 | D34 Region Of Human Ankyrin-R And Linker Length = 4 | 5e-12 | ||
| 4grg_A | 135 | Crystal Structure Of Ige Complexed With E2_79, An A | 1e-11 | ||
| 2xzt_G | 136 | Caspase-3 In Complex With Darpin-3.4_i78s Length = | 1e-10 | ||
| 2y0b_G | 136 | Caspase-3 In Complex With An Inhibitory Darpin-3.4_ | 2e-10 | ||
| 2xzd_G | 136 | Caspase-3 In Complex With An Inhibitory Darpin-3.4 | 3e-10 | ||
| 2v4h_C | 136 | Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13 | 4e-10 | ||
| 2l6b_A | 115 | Nrc Consensus Ankyrin Repeat Protein Solution Struc | 4e-10 | ||
| 2l6b_A | 115 | Nrc Consensus Ankyrin Repeat Protein Solution Struc | 3e-09 | ||
| 2y1l_E | 169 | Caspase-8 In Complex With Darpin-8.4 Length = 169 | 5e-10 | ||
| 3aji_A | 231 | Structure Of Gankyrin-S6atpase Photo-Cross-Linked S | 1e-09 | ||
| 3zuv_B | 136 | Crystal Structure Of A Designed Selected Ankyrin Re | 2e-09 | ||
| 2dvw_A | 231 | Structure Of The Oncoprotein Gankyrin In Complex Wi | 2e-09 | ||
| 1uoh_A | 226 | Human Gankyrin Length = 226 | 5e-09 | ||
| 1qym_A | 227 | X-Ray Structure Of Human Gankyrin Length = 227 | 5e-09 | ||
| 2jab_A | 136 | A Designed Ankyrin Repeat Protein Evolved To Picomo | 9e-09 | ||
| 3hg0_D | 136 | Crystal Structure Of A Darpin In Complex With Orf49 | 1e-08 | ||
| 1ap7_A | 168 | P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1 | 2e-08 | ||
| 3utm_A | 351 | Crystal Structure Of A Mouse Tankyrase-Axin Complex | 2e-08 | ||
| 1blx_B | 166 | P19ink4dCDK6 COMPLEX Length = 166 | 2e-08 | ||
| 1bi8_B | 166 | Mechanism Of G1 Cyclin Dependent Kinase Inhibition | 2e-08 | ||
| 3v30_A | 172 | Crystal Structure Of The Peptide Bound Complex Of T | 2e-08 | ||
| 1k1b_A | 241 | Crystal Structure Of The Ankyrin Repeat Domain Of B | 6e-08 | ||
| 4b93_B | 269 | Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri | 7e-08 | ||
| 2zgg_A | 92 | Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom | 1e-07 | ||
| 3uxg_A | 172 | Crystal Structure Of Rfxank Length = 172 | 1e-07 | ||
| 1awc_B | 153 | Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1 | 1e-07 | ||
| 2zgd_A | 110 | Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom | 2e-07 | ||
| 1bd8_A | 156 | Structure Of Cdk Inhibitor P19ink4d Length = 156 | 2e-07 | ||
| 2rfa_A | 232 | Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat | 1e-06 | ||
| 2xen_A | 91 | Structural Determinants For Improved Thermal Stabil | 2e-06 | ||
| 2he0_A | 253 | Crystal Structure Of A Human Notch1 Ankyrin Domain | 3e-06 | ||
| 2qc9_A | 210 | Mouse Notch 1 Ankyrin Repeat Intracellular Domain L | 4e-06 | ||
| 2kbx_A | 171 | Solution Structure Of Ilk-Pinch Complex Length = 17 | 4e-06 | ||
| 3f6q_A | 179 | Crystal Structure Of Integrin-Linked Kinase Ankyrin | 5e-06 | ||
| 1yyh_A | 253 | Crystal Structure Of The Human Notch 1 Ankyrin Doma | 5e-06 | ||
| 2f8y_A | 223 | Crystal Structure Of Human Notch1 Ankyrin Repeats T | 6e-06 | ||
| 2f8x_K | 256 | Crystal Structure Of Activated Notch, Csl And Maml | 7e-06 | ||
| 3b7b_A | 237 | Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le | 8e-06 | ||
| 1ikn_D | 236 | IkappabalphaNF-Kappab Complex Length = 236 | 1e-05 | ||
| 1nfi_E | 213 | I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213 | 2e-05 | ||
| 1mx4_A | 168 | Structure Of P18ink4c (F82q) Length = 168 | 2e-05 | ||
| 1oy3_D | 282 | Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer | 2e-05 | ||
| 1k3z_D | 282 | X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi | 2e-05 | ||
| 1ihb_A | 162 | Crystal Structure Of P18-Ink4c(Ink6) Length = 162 | 3e-05 | ||
| 2rfm_A | 192 | Structure Of A Thermophilic Ankyrin Repeat Protein | 3e-05 | ||
| 1bu9_A | 168 | Solution Structure Of P18-Ink4c, 21 Structures Leng | 4e-05 | ||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 4e-05 | ||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 5e-05 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 6e-05 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 6e-05 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 6e-05 | ||
| 1ixv_A | 231 | Crystal Structure Analysis Of Homolog Of Oncoprotei | 7e-05 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 7e-05 | ||
| 1wg0_A | 243 | Structural Comparison Of Nas6p Protein Structures I | 7e-05 | ||
| 2dzn_A | 228 | Crystal Structure Analysis Of Yeast Nas6p Complexed | 7e-05 | ||
| 1mx2_A | 168 | Structure Of F71n Mutant Of P18ink4c Length = 168 | 8e-05 | ||
| 3eu9_A | 240 | The Ankyrin Repeat Domain Of Huntingtin Interacting | 1e-04 | ||
| 1mx6_A | 168 | Structure Of P18ink4c (F92n) Length = 168 | 2e-04 | ||
| 1ot8_A | 239 | Structure Of The Ankyrin Domain Of The Drosophila N | 3e-04 | ||
| 1ot8_A | 239 | Structure Of The Ankyrin Domain Of The Drosophila N | 4e-04 | ||
| 3hra_A | 201 | Crystal Structure Of Ef0377 An Ankyrin Repeat Prote | 3e-04 |
| >pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native Structure Length = 309 | Back alignment and structure |
|
| >pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type Rubisco Activase From R. Sphaeroides Length = 289 | Back alignment and structure |
|
| >pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Selenomethionine Structure Length = 309 | Back alignment and structure |
|
| >pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126 | Back alignment and structure |
|
| >pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169 | Back alignment and structure |
|
| >pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169 | Back alignment and structure |
|
| >pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169 | Back alignment and structure |
|
| >pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169 | Back alignment and structure |
|
| >pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169 | Back alignment and structure |
|
| >pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169 | Back alignment and structure |
|
| >pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166 | Back alignment and structure |
|
| >pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166 | Back alignment and structure |
|
| >pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169 | Back alignment and structure |
|
| >pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169 | Back alignment and structure |
|
| >pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169 | Back alignment and structure |
|
| >pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169 | Back alignment and structure |
|
| >pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169 | Back alignment and structure |
|
| >pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169 | Back alignment and structure |
|
| >pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169 | Back alignment and structure |
|
| >pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169 | Back alignment and structure |
|
| >pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166 | Back alignment and structure |
|
| >pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166 | Back alignment and structure |
|
| >pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169 | Back alignment and structure |
|
| >pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169 | Back alignment and structure |
|
| >pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169 | Back alignment and structure |
|
| >pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157 | Back alignment and structure |
|
| >pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157 | Back alignment and structure |
|
| >pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157 | Back alignment and structure |
|
| >pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157 | Back alignment and structure |
|
| >pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93 | Back alignment and structure |
|
| >pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169 | Back alignment and structure |
|
| >pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169 | Back alignment and structure |
|
| >pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169 | Back alignment and structure |
|
| >pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169 | Back alignment and structure |
|
| >pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169 | Back alignment and structure |
|
| >pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169 | Back alignment and structure |
|
| >pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154 | Back alignment and structure |
|
| >pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154 | Back alignment and structure |
|
| >pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166 | Back alignment and structure |
|
| >pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166 | Back alignment and structure |
|
| >pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169 | Back alignment and structure |
|
| >pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169 | Back alignment and structure |
|
| >pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169 | Back alignment and structure |
|
| >pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169 | Back alignment and structure |
|
| >pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167 | Back alignment and structure |
|
| >pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167 | Back alignment and structure |
|
| >pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175 | Back alignment and structure |
|
| >pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175 | Back alignment and structure |
|
| >pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167 | Back alignment and structure |
|
| >pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167 | Back alignment and structure |
|
| >pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165 | Back alignment and structure |
|
| >pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165 | Back alignment and structure |
|
| >pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158 | Back alignment and structure |
|
| >pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437 | Back alignment and structure |
|
| >pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135 | Back alignment and structure |
|
| >pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136 | Back alignment and structure |
|
| >pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136 | Back alignment and structure |
|
| >pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136 | Back alignment and structure |
|
| >pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136 | Back alignment and structure |
|
| >pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115 | Back alignment and structure |
|
| >pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115 | Back alignment and structure |
|
| >pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169 | Back alignment and structure |
|
| >pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231 | Back alignment and structure |
|
| >pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136 | Back alignment and structure |
|
| >pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231 | Back alignment and structure |
|
| >pdb|1UOH|A Chain A, Human Gankyrin Length = 226 | Back alignment and structure |
|
| >pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227 | Back alignment and structure |
|
| >pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136 | Back alignment and structure |
|
| >pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136 | Back alignment and structure |
|
| >pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168 | Back alignment and structure |
|
| >pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351 | Back alignment and structure |
|
| >pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166 | Back alignment and structure |
|
| >pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166 | Back alignment and structure |
|
| >pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172 | Back alignment and structure |
|
| >pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241 | Back alignment and structure |
|
| >pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269 | Back alignment and structure |
|
| >pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92 | Back alignment and structure |
|
| >pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172 | Back alignment and structure |
|
| >pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153 | Back alignment and structure |
|
| >pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110 | Back alignment and structure |
|
| >pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156 | Back alignment and structure |
|
| >pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232 | Back alignment and structure |
|
| >pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91 | Back alignment and structure |
|
| >pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253 | Back alignment and structure |
|
| >pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210 | Back alignment and structure |
|
| >pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171 | Back alignment and structure |
|
| >pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179 | Back alignment and structure |
|
| >pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253 | Back alignment and structure |
|
| >pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223 | Back alignment and structure |
|
| >pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256 | Back alignment and structure |
|
| >pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237 | Back alignment and structure |
|
| >pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236 | Back alignment and structure |
|
| >pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213 | Back alignment and structure |
|
| >pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168 | Back alignment and structure |
|
| >pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282 | Back alignment and structure |
|
| >pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282 | Back alignment and structure |
|
| >pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162 | Back alignment and structure |
|
| >pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192 | Back alignment and structure |
|
| >pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168 | Back alignment and structure |
|
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243 | Back alignment and structure |
|
| >pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228 | Back alignment and structure |
|
| >pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168 | Back alignment and structure |
|
| >pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240 | Back alignment and structure |
|
| >pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168 | Back alignment and structure |
|
| >pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239 | Back alignment and structure |
|
| >pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239 | Back alignment and structure |
|
| >pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 1e-58
Identities = 102/293 (34%), Positives = 149/293 (50%), Gaps = 23/293 (7%)
Query: 186 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH 245
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL H
Sbjct: 14 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLH 69
Query: 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 305
M+F GNPGTGKT VA + LL+ +G + + V R DLVG+++GHT PKT+ +K A
Sbjct: 70 MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA 129
Query: 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIFAGYSEPMKRVIAS 363
GG+LF+DEAY L DYG EA+E ++ VM+ +VVI AGY++ M+ S
Sbjct: 130 MGGVLFIDEAYYLYRPDNER--DYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS 187
Query: 364 NEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423
N GF R+ F D++ EEL +I +++Q + + +A AL
Sbjct: 188 NPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ-----------NYQMTPEAETALRAYI 236
Query: 424 TTEKQRREM-NGGLVDPMLVNARENLDLRL---SFDCLDTDELRTITLEDLEA 472
+ + N + L AR RL S LD L TI ED+ A
Sbjct: 237 GLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRA 289
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-33
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
I + G+ +A + L + LN+ + +PLH + ++ +V+ L+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMR----GA 63
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 136
+ N +TPLH+AA +G + + LL + A I A +G PLH + ++ +
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG--QDQ-- 119
Query: 137 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+ L+ A S + G+ P+ + P LRE
Sbjct: 120 VAEDLVANGALVSICNKYGEMPV-DKAKAPLRELLRERAEKM 160
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-30
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ A V+ L+ ND L + +G +PLH A + G + ++L+ G
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTEND---LNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A I TPLHL+ + D V+ LL+Y AD +A + G PL H + G
Sbjct: 63 ARINVMNRGDDTPLHLAASHG--HRD--IVQKLLQYKADINAVNEHGNVPL-HYACFWGQ 117
Query: 169 AKLRELLLWH 178
++ E L+ +
Sbjct: 118 DQVAEDLVAN 127
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 84.8 bits (211), Expect = 2e-19
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143
+ + G A +L L + + ++G +PLH + RS V+ L+
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG-RSA---VVEMLIM 60
Query: 144 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
A + + TPL HL+ G + + LL +
Sbjct: 61 RGARINVMNRGDDTPL-HLAASHGHRDIVQKLLQY 94
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 68.2 bits (168), Expect = 1e-13
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
PLH + + + ++ + L+ + + N YGE P+ A + G
Sbjct: 106 NVPLHYACFWGQDQVAEDLVA----NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161
Query: 109 AFIEAKANNGMTPLHLSVW 127
+ P + W
Sbjct: 162 QNLNR------IPYKDTFW 174
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 7e-05
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 116 NNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPGSAKLREL 174
M + + V+ L+ D + D+ G +PL H + G + + E+
Sbjct: 3 PEFMDDIFTQCREG----NAVAVRLWLDNTENDLNQGDDHGFSPL-HWACREGRSAVVEM 57
Query: 175 LLWH 178
L+
Sbjct: 58 LIMR 61
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-32
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH+++ V+ LL+ G+D ++ G TPLH A +G + +LLL H
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQ-NGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + +PLH + D VK LL Y A +A + G P+ ++
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNG--HVD--IVKLLLSYGASRNAVNIFGLRPV-DYTDDESM 121
Query: 169 AKLRELLLWH 178
L L +
Sbjct: 122 KSLLLLPEKN 131
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 91.3 bits (228), Expect = 3e-22
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139
N GET LH+A+ G + + LL +G+ K + G TPLH + + V+
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG----HLKVVE 60
Query: 140 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
LL++ A + + +PL H + G + +LLL +
Sbjct: 61 LLLQHKALVNTTGYQNDSPL-HDAAKNGHVDIVKLLLSY 98
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 5e-13
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+PLH +A +IVK LL + G + A N++G P+ L +
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSY-GASR---NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Query: 109 A 109
+
Sbjct: 133 S 133
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
Score = 117 bits (297), Expect = 2e-31
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
H A G+L + LR+ +L+N+ + TPL ++ + + E V+ LLEW G D
Sbjct: 7 HQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEW-GADP-- 62
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 137
E+ L +A+ G + LLL I NG TPL +V +
Sbjct: 63 -HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN--HVK--C 117
Query: 138 VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V+ LL AD + + + G TP+ L+ G K+++++ H
Sbjct: 118 VEALLARGADLTTEADSGYTPM-DLAVALGYRKVQQVIENH 157
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-29
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+H A + + +K L G++ V + G TPL A+ G E + LL G
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRK-GDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
A A + L L+ D V LLE + D + D G TPL
Sbjct: 60 ADPHILAKERESALSLASTGG--YTD--IVGLLLERDVDINIYDWNGGTPL 106
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-28
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++ L +++ +IV LLE V++ + G TPL A + + + LLA G
Sbjct: 70 ESALSLASTGGYTDIVGLLLE----RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 158
A + +A++G TP+ L+V + + + + P
Sbjct: 126 ADLTTEADSGYTPMDLAVALG--YRK--VQQVIENHILKLFQSNLVPADP 171
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 1e-17
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143
+H A G + K L G + G TPL + + + TV+ LLE
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG----EIETVRFLLE 57
Query: 144 YNADCSAKDNEGKTPL 159
+ AD E ++ L
Sbjct: 58 WGADPHILAKERESAL 73
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-31
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+PLH++A Y + LL V +A+ TPLHMAA G ++LL HG
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + AK MT LH + ++ ++ V+ L++Y AD + KT +S G+
Sbjct: 91 ADVNAKDMLKMTALHWATEHN--HQE--VVELLIKYGADVHTQSKFCKTAF-DISIDNGN 145
Query: 169 AKLRELL 175
L E+L
Sbjct: 146 EDLAEIL 152
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-28
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L +A + + V+ L+ + G +PLH+AA+ G ++LL G
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAP-----FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
+A+ TPLH++ + V+ LL++ AD +AKD T L H +
Sbjct: 58 VSRDARTKVDRTPLHMAASEG--HAN--IVEVLLKHGADVNAKDMLKMTAL-HWATEHNH 112
Query: 169 AKLRELLLWH 178
++ ELL+ +
Sbjct: 113 QEVVELLIKY 122
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 85.1 bits (212), Expect = 7e-20
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
L AA+ G ++ ++L+A+GA G +PLHL+ Y T + LL
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQY--GHFS--TTEVLLRA 56
Query: 145 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
A+ +TPL H++ G A + E+LL H
Sbjct: 57 GVSRDARTKVDRTPL-HMAASEGHANIVEVLLKH 89
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-31
Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH +A AE VK LL G D A++ G TPLH+AAKNG E KLLLA G
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLS-KGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
A + A++ +G TP HL+ + VK L AD +A+ H
Sbjct: 66 ADVNARSKDGNTPEHLAKKNG--HHE--IVKLLDAKGADVNARSWGSSHHHHH 114
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 90.1 bits (225), Expect = 5e-22
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141
+ G TPLH AAKNG E K LL+ GA + A++ +G TPLHL+ + VK L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HAE--IVKLL 61
Query: 142 LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
L AD +A+ +G TP HL+ G ++ +LL
Sbjct: 62 LAKGADVNARSKDGNTPE-HLAKKNGHHEIVKLLDAK 97
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 46.6 bits (112), Expect = 1e-06
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
G + +G TPLH + + VK LL AD +A+ +G TPL HL+ G
Sbjct: 1 GHMW--GSKDGNTPLHNAAKNG--HAE--EVKKLLSKGADVNARSKDGNTPL-HLAAKNG 53
Query: 168 SAKLRELLLWH 178
A++ +LLL
Sbjct: 54 HAEIVKLLLAK 64
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 4e-31
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH +AGYN+ +V+ LL+ ++ A++ G PLH A G E A+LL+ HG
Sbjct: 43 STPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + TPLH + + K LL++ AD + K+ +G TPLD + + G
Sbjct: 99 AVVNVADLWKFTPLHEAAAKG--KYE--ICKLLLQHGADPTKKNRDGNTPLDLVKD--GD 152
Query: 169 AKLRELLLWH 178
+++LL
Sbjct: 153 TDIQDLLRGD 162
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 7e-30
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L +A E VK L + TPLH AA + LL HG
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + AK G+ PLH + Y Y + L+++ A + D TPL H + G
Sbjct: 66 ADVHAKDKGGLVPLHNACSYG----HYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGK 120
Query: 169 AKLRELLLWH 178
++ +LLL H
Sbjct: 121 YEICKLLLQH 130
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 88.2 bits (220), Expect = 8e-21
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 82 NMYGETPLHMAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140
N + L AAK G E K L TPLH + Y V+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY--NRVS--VVEY 60
Query: 141 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
LL++ AD AKD G PL H + G ++ ELL+ H
Sbjct: 61 LLQHGADVHAKDKGGLVPL-HNACSYGHYEVAELLVKH 97
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 60.5 bits (148), Expect = 4e-11
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH +A K EI K LL+ G D +N G TPL + +G + LL
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQH-GADP---TKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163
Query: 109 A 109
A
Sbjct: 164 A 164
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-31
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TP +A + + LLE +++A + G T L A G ++ +LL G
Sbjct: 45 ETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99
Query: 109 AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
A ++ + G+T LH++ Y + V+ L+E AD +D G T L L+
Sbjct: 100 ADLDHRDMRGGLTALHMAAGYV--RPE--VVEALVELGADIEVEDERGLTAL-ELAREIL 154
Query: 168 SAKLRELLLWH 178
+ +
Sbjct: 155 KTTPKGNPMQF 165
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 6e-23
Identities = 28/131 (21%), Positives = 42/131 (32%), Gaps = 14/131 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ + D ETP AA+ +A LL
Sbjct: 15 AMEYLIEWKDGHSPSWVPSSY-IAADV------VSEYETPWWTAARKADEQALSQLL-ED 66
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE-GKTPLDHLSNGPG 167
++A NG T L S+ V+ L E AD +D G T L H++ G
Sbjct: 67 RDVDAVDENGRTALLFVAGLG--SDK--CVRLLAEAGADLDHRDMRGGLTAL-HMAAGYV 121
Query: 168 SAKLRELLLWH 178
++ E L+
Sbjct: 122 RPEVVEALVEL 132
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 1e-22
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 107
+T L AG + V+ L E +L+ ++M G T LHMAA E + L+
Sbjct: 77 RTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152
GA IE + G+T L L+ ++ +++ +
Sbjct: 133 GADIEVEDERGLTALELAREIL-KTT---PKGNPMQFGRRIGLEK 173
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 7e-15
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
+ R+ T LH++AGY + E+V++L+E ++E ++ G T L +A +
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVE----LGADIEVEDERGLTALELAREILKTTP 158
Query: 101 AKLLLAHGAFIEAKA 115
+ G I +
Sbjct: 159 KGNPMQFGRRIGLEK 173
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-13
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139
G + K+G + + A + ++ TP + + D +
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKA----DEQALS 61
Query: 140 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
LLE + D A D G+T L G GS K LL
Sbjct: 62 QLLE-DRDVDAVDENGRTAL-LFVAGLGSDKCVRLLAEA 98
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
Score = 117 bits (297), Expect = 5e-31
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+P + + EI+ +L+ + +L N YG L AA+ G + KLLL G
Sbjct: 73 DSPYLYAGAQGRTEILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Query: 109 -AFIEAKANNGMTPLHLSVWYSIRSEDY-ATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166
I+ + + G T L +V ++ Y VK L+E AD S KDN G+T +D+ +
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK- 188
Query: 167 GSAKLRELLLWHS 179
G ++ ++L ++
Sbjct: 189 GYTEISKILAQYN 201
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-26
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L + + ++ + L + +++ + G TPL++A N E AK L+ G
Sbjct: 7 GALLEAANQRDTKKVKEILQD----TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPL 159
A I + + +P + + + +L++ D + + G L
Sbjct: 63 ADINLQNSISDSPYLYAGAQG--RTE--ILAYMLKHATPDLNKHNRYGGNAL 110
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
Score = 87.9 bits (219), Expect = 2e-20
Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140
+ L A + + ++L ++ G TPL+++V + K
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN--NDIE--IAKA 57
Query: 141 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
L++ AD + +++ +P + G ++ +L H
Sbjct: 58 LIDRGADINLQNSISDSPY-LYAGAQGRTEILAYMLKH 94
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-30
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPL +A + + +V+ LL+ G D + E+ L +A G + K+LL G
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQN-GADP---QLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
+ NG TPL +V + VK LLE AD + + + G + L+ G
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGN----HVKCVKMLLESGADPTIETDSGYNSM-DLAVALGY 147
Query: 169 AKLRELLLWH 178
+++++ H
Sbjct: 148 RSVQQVIESH 157
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 112 bits (284), Expect = 1e-29
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+H A + + + +E + + + G TPL AA +G + LL +G
Sbjct: 4 SLSVHQLAAQGEMLYLATRIE----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
A + + L L+ D VK LL+ D + D G TPL
Sbjct: 60 ADPQLLGKGRESALSLACSKG--YTD--IVKMLLDCGVDVNEYDWNGGTPL 106
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-25
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++ L ++ +IVK LL+ V++ + G TPL A + K+LL G
Sbjct: 70 ESALSLACSKGYTDIVKMLLD----CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 154
A + ++G + L+V + + + E
Sbjct: 126 ADPTIETDSGYNSMDLAVAL--GYRS--VQQVIESHLLKLLQNIKE 167
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 87.1 bits (217), Expect = 2e-20
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
+H A G + I G TPL + + A V+ LL+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG----QIAVVEFLLQN 58
Query: 145 NADCSAKDNEGKTPL 159
AD ++ L
Sbjct: 59 GADPQLLGKGRESAL 73
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 43.5 bits (104), Expect = 3e-05
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 117 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
+H + + T +E + D EG TPL
Sbjct: 2 ANSLSVHQLA----AQGEMLYLATRIEQENVINHTDEEGFTPL 40
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-30
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH + + + + L+ N +L+A+ G TPL +AA+ + L+
Sbjct: 59 RTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + A + G + LH + + + D LL+ A+ ++N +TPL L+ GS
Sbjct: 116 ADVNAVDDLGKSALHWAAAVN--NVD--AAVVLLKNGANKDMQNNREETPL-FLAAREGS 170
Query: 169 AKLRELLLWH 178
+ ++LL H
Sbjct: 171 YETAKVLLDH 180
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-30
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPL ++A +++ L+ ++ A + G++ LH AA +AA +LL +G
Sbjct: 93 TTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + + N TPL L+ Y T K LL++ A+ D+ + P ++
Sbjct: 149 ANKDMQNNREETPLFLAAREG----SYETAKVLLDHFANRDITDHMDRLPR-DIAQERMH 203
Query: 169 AKLRELLLWH 178
+ LL +
Sbjct: 204 HDIVRLLDEY 213
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-30
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH++A Y++++ K LLE + Q+ G TPLH A ++L+ +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 109 AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
A ++A+ ++G TPL L+ + E ++ L+ +AD +A D+ GK+ L H +
Sbjct: 82 ATDLDARMHDGTTPLILAARLA--VEG--MLEDLINSHADVNAVDDLGKSAL-HWAAAVN 136
Query: 168 SAKLRELLLWH 178
+ +LL +
Sbjct: 137 NVDAAVVLLKN 147
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++ LH +A N + LL+ + + QN ETPL +AA+ G E AK+LL H
Sbjct: 126 KSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153
A + + P ++ D V+ L EYN S + +
Sbjct: 182 ANRDITDHMDRLPRDIAQERM--HHD--IVRLLDEYNLVRSPQLH 222
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 7e-22
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 59 NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG 118
+ ++ + G + GET LH+AA+ ++AAK LL A + N G
Sbjct: 2 DAPAVISDFIY-QGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG 58
Query: 119 MTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177
TPLH +V ++ + L+ A D A+ ++G TPL L+ + E L+
Sbjct: 59 RTPLHAAVSA--DAQG--VFQILIRNRATDLDARMHDGTTPL-ILAARLAVEGMLEDLIN 113
Query: 178 H 178
Sbjct: 114 S 114
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-30
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
L +A + + V+ L+ + ++ A++ YG TPL++A +G E ++LL +GA
Sbjct: 16 KKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169
+ A G TPLHL+ + + + LL++ AD +A+D GKT +S G G+
Sbjct: 72 DVNAVDAIGFTPLHLAAFIG--HLE--IAEVLLKHGADVNAQDKFGKTAF-DISIGNGNE 126
Query: 170 KLRELLLWHS 179
L E+L +
Sbjct: 127 DLAEILQKLN 136
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 95.1 bits (238), Expect = 1e-23
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPL+++ + EIV+ LL+ + ++ A + G TPLH+AA G E A++LL HG
Sbjct: 48 LTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145
A + A+ G T +S+ +ED + L + N
Sbjct: 104 ADVNAQDKFGKTAFDISIGNG--NED--LAEILQKLN 136
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 89.8 bits (224), Expect = 1e-21
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 137
L AA+ G ++ ++L+A+GA + AK G+TPL+L+ + +
Sbjct: 7 HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLE--I 62
Query: 138 VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V+ LL+ AD +A D G TPL HL+ G ++ E+LL H
Sbjct: 63 VEVLLKNGADVNAVDAIGFTPL-HLAAFIGHLEIAEVLLKH 102
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 2e-07
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 99 EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 158
+ HG+ + L + +D V+ L+ AD +AKD G TP
Sbjct: 2 RGSHHHHHHGS-------DLGKKLLEAARAG--QDD--EVRILMANGADVNAKDEYGLTP 50
Query: 159 LDHLSNGPGSAKLRELLLWH 178
L +L+ G ++ E+LL +
Sbjct: 51 L-YLATAHGHLEIVEVLLKN 69
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 112 bits (284), Expect = 4e-30
Identities = 59/130 (45%), Positives = 76/130 (58%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE G D A++ G TPLH+AA+NG E KLLL G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + AK NG TPLHL+ + VK LLE AD +AKD G+TPL HL+ G
Sbjct: 59 ADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEAGADVNAKDKNGRTPL-HLAARNGH 113
Query: 169 AKLRELLLWH 178
++ +LLL
Sbjct: 114 LEVVKLLLEA 123
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 93.9 bits (235), Expect = 3e-23
Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE G D A++ G TPLH+AA+NG E KLLL G
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146
A + AK NG TPLHL+ + VK LLE A
Sbjct: 92 ADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEAGA 125
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 89.7 bits (224), Expect = 9e-22
Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
G TPLH+AA+NG E KLLL GA + AK NG TPLHL+ + VK LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEA 57
Query: 145 NADCSAKDNEGKTPL 159
AD +AKD G+TPL
Sbjct: 58 GADVNAKDKNGRTPL 72
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 70.1 bits (173), Expect = 7e-15
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE G D A++ G TPLH+AA+NG E KLLL G
Sbjct: 69 RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 109 AF 110
A+
Sbjct: 125 AY 126
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 43.9 bits (105), Expect = 1e-05
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 117 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
NG TPLHL+ + VK LLE AD +AKD G+TPL
Sbjct: 1 NGRTPLHLAARNG--HLE--VVKLLLEAGADVNAKDKNGRTPL 39
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 113 bits (287), Expect = 4e-30
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH++A EIV+ LL+ G D A + G TPL +AA G E ++LL +G
Sbjct: 48 WTPLHLAAFNGHLEIVEVLLK-NGADV---NAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + A G TPLHL+ + + V+ LL+ AD +A+D GKT +S G+
Sbjct: 104 ADVNANDMEGHTPLHLAAMFG--HLE--IVEVLLKNGADVNAQDKFGKTAF-DISIDNGN 158
Query: 169 AKLRELLLWHS 179
L E+L +
Sbjct: 159 EDLAEILQKLN 169
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-29
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L +A + + V+ L+ + ++ A++ G TPLH+AA NG E ++LL +G
Sbjct: 15 GKKLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + A + GMTPL L+ + + V+ LL+ AD +A D EG TPL HL+ G
Sbjct: 71 ADVNAVDHAGMTPLRLAALFG--HLE--IVEVLLKNGADVNANDMEGHTPL-HLAAMFGH 125
Query: 169 AKLRELLLWH 178
++ E+LL +
Sbjct: 126 LEIVEVLLKN 135
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 89.0 bits (222), Expect = 4e-21
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 137
L AA+ G ++ ++L+A+GA + A+ +G TPLHL+ + +
Sbjct: 7 HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HLE--I 62
Query: 138 VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V+ LL+ AD +A D+ G TPL L+ G ++ E+LL +
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPL-RLAALFGHLEIVEVLLKN 102
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-30
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH++ V L+ EL+ N +TPLH+A +LL+ G
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS----AKDNEGKTPLDHLSN 164
A A +G T HL+ + RS ++ LL+ A + A++ +G T L H++
Sbjct: 70 ASPMALDRHGQTAAHLACEH--RSPT--CLRALLDSAAPGTLDLEARNYDGLTAL-HVAV 124
Query: 165 GPGSAKLRELLLWH 178
+ +LLL
Sbjct: 125 NTECQETVQLLLER 138
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
QT H++ + +++LL+ ++LEA+N G T LH+A C E +LLL G
Sbjct: 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 109 AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
A I+A +G +PL +V + S V+ LL++ A+ +A+ G + L H ++G G
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENN--SLS--MVQLLLQHGANVNAQMYSGSSAL-HSASGRG 194
Query: 168 SAKLRELLLWH 178
L L+
Sbjct: 195 LLPLVRTLVRS 205
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-27
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 107
T LHV+ E V+ LLE +++A ++ G +PL A +N +LLL H
Sbjct: 117 LTALHVAVNTECQETVQLLLER----GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
GA + A+ +G + LH + V+TL+ AD S K+ TPL ++
Sbjct: 173 GANVNAQMYSGSSALHSASGRG--LLP--LVRTLVRSGADSSLKNCHNDTPL-MVARSRR 227
Query: 168 SAKLRELLLWH 178
+
Sbjct: 228 VIDILRGKATR 238
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 3e-21
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
+ + ++PL + N +V+ LL+ + AQ G + LH A+ G
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLPL 198
Query: 101 AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146
+ L+ GA K + TPL ++ R D ++ A
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPLMVARSR--RVID--ILRGKATRPA 240
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 8e-21
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLL----AHGAFIEAKANNGMTPLHLSVWYSIRSEDY 135
+ G+TPLH+A G A L+ G ++ N TPLHL+V
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT--TLPS- 60
Query: 136 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V+ L+ A A D G+T HL+ S LL
Sbjct: 61 -VVRLLVTAGASPMALDRHGQTAA-HLACEHRSPTCLRALLDS 101
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-29
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T L + N+ I + LL G++ ++ G+TPL + G +E + LL HG
Sbjct: 69 STALIWAVKNNRLGIAEKLLS-KGSNV---NTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + + G TPL ++ Y + VK LLE AD SA+D G T + G
Sbjct: 125 ANVNDRNLEGETPLIVASKYG--RSE--IVKKLLELGADISARDLTGLTAE-ASARIFGR 179
Query: 169 AKLRELLLWH 178
++ ++
Sbjct: 180 QEVIKIFTEV 189
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 15/130 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ + + + + L ++ Y TPL +A G A L+ +
Sbjct: 9 EIVEKIKDEKSINQNLDFLRN----------YRDSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
+E K G T L +V + + LL ++ + KD GKTPL S G
Sbjct: 59 DKLEDKDIEGSTALIWAVKNN--RLG--IAEKLLSKGSNVNTKDFSGKTPL-MWSIIFGY 113
Query: 169 AKLRELLLWH 178
+++ LL H
Sbjct: 114 SEMSYFLLEH 123
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 94.0 bits (235), Expect = 1e-22
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPL S + +E+ LLE G + +N+ GETPL +A+K G +E K LL G
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLE-HGANV---NDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146
A I A+ G+T + + ++ +K E
Sbjct: 158 ADISARDLTGLTAEASARIFG--RQE--VIKIFTEVRR 191
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 1e-14
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140
+ GE + + N+ L + + TPL ++ E+ +
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLG--MEN--AIDK 53
Query: 141 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
L+E KD EG T L + + E LL
Sbjct: 54 LVENFDKLEDKDIEGSTAL-IWAVKNNRLGIAEKLLSK 90
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH + + + + L+ N +L+A+ G TPL +AA+ + L+
Sbjct: 91 RTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + A + G + LH + + + D LL+ A+ ++N +TPL L+ GS
Sbjct: 148 ADVNAVDDLGKSALHWAAAVN--NVD--AAVVLLKNGANKDMQNNREETPL-FLAAREGS 202
Query: 169 AKLRELLLWH 178
+ ++LL H
Sbjct: 203 YETAKVLLDH 212
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 6e-29
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPL ++A +++ L+ N ++ A + G++ LH AA +AA +LL +G
Sbjct: 125 TTPLILAARLAVEGMLEDLI----NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + + N TPL L+ Y T K LL++ A+ D+ + P ++
Sbjct: 181 ANKDMQNNREETPLFLAAREG----SYETAKVLLDHFANRDITDHMDRLPR-DIAQERMH 235
Query: 169 AKLRELLLWH 178
+ LL
Sbjct: 236 HDIVRLLDLE 245
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 1e-23
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGN-DKVEL---------EAQNMYGETPLHMAAKNGCN 98
TPL +++ + E + + GET LH+AA+ +
Sbjct: 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70
Query: 99 EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKT 157
+AAK LL A + N G TPLH +V + L+ A D A+ ++G T
Sbjct: 71 DAAKRLLEASADANIQDNMGRTPLHAAVSAD----AQGVFQILIRNRATDLDARMHDGTT 126
Query: 158 PLDHLSNGPGSAKLRELLLWH 178
PL L+ + E L+
Sbjct: 127 PL-ILAARLAVEGMLEDLINS 146
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 1e-22
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++ LH +A N + LL+ + + QN ETPL +AA+ G E AK+LL H
Sbjct: 158 KSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147
A + + P ++ D V+ L +
Sbjct: 214 ANRDITDHMDRLPRDIAQER--MHHD--IVRLLDLEHHH 248
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 81.7 bits (203), Expect = 1e-17
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query: 76 VELEAQNMYGETPLHMAAKNG-------------CNEAAKLLLAHGAFIE-AKANNGMTP 121
+++ + G TPL +A+ +G + GA + G T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
LHL+ YS RS+ K LLE +AD + +DN G+TPL H + + + ++L+ +
Sbjct: 61 LHLAARYS-RSD---AAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRN 112
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-12
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPL ++A E K LL+ + + P +A + ++ +LL
Sbjct: 191 ETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246
Query: 109 AFI 111
Sbjct: 247 HHH 249
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TP +A + + LLE +++A + G T L A G ++ +LL G
Sbjct: 46 ETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100
Query: 109 AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
A ++ + G+T LH++ Y + V+ L+E AD +D G T L L+
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYV--RPE--VVEALVELGADIEVEDERGLTAL-ELAREIL 155
Query: 168 SAKLRELLLWH 178
+ +
Sbjct: 156 KTTPKGNPMQF 166
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 7e-23
Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 32/153 (20%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 107
+T L AG + V+ L E +L+ ++M G T LHMAA E + L+
Sbjct: 78 RTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD-------------------- 147
GA IE + G+T L L+ +++
Sbjct: 134 GADIEVEDERGLTALELAREIL--KTT--PKGNPMQFGRRIGLEKVINVLEGQVFEYAEV 189
Query: 148 --CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
K +GK +L + H
Sbjct: 190 DEIVEKRGKGKDVE-YLVRWKDGGDCEWVKGVH 221
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 5e-21
Identities = 28/131 (21%), Positives = 42/131 (32%), Gaps = 14/131 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ + D ETP AA+ +A LL
Sbjct: 16 AMEYLIEWKDGHSPSWVPSSYI-AADV------VSEYETPWWTAARKADEQALSQLL-ED 67
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE-GKTPLDHLSNGPG 167
++A NG T L S+ V+ L E AD +D G T L H++ G
Sbjct: 68 RDVDAVDENGRTALLFVAGLG--SDK--CVRLLAEAGADLDHRDMRGGLTAL-HMAAGYV 122
Query: 168 SAKLRELLLWH 178
++ E L+
Sbjct: 123 RPEVVEALVEL 133
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
G + K+G + + A + ++ TP + + D + LLE
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKA----DEQALSQLLE- 66
Query: 145 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+ D A D G+T L G GS K LL
Sbjct: 67 DRDVDAVDENGRTAL-LFVAGLGSDKCVRLLAEA 99
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-11
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 20/96 (20%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEW------------------PGNDKVELEAQNMYGETPLH 90
T L ++ K + +++ + E+ + G+ +
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204
Query: 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126
+ + + H A AK L +V
Sbjct: 205 LVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAV 238
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLE------WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
T +A Y K + +K L + K + E G T L AA+ G E K
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 103 LLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
+LL GA + A N G L ++ S S+ A LL++ AD + + GKTPL
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL-I 224
Query: 162 LSNGPGSAKLRELLLWH 178
L+ L + LL
Sbjct: 225 LAVEKKHLGLVQRLLEQ 241
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAH 107
L + ++V+ LLE + Q G TPLH A + + +LLL H
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
GA + NG TP L+ +K L AD + D G T
Sbjct: 62 GADPVLRKKNGATPFLLAAIAG----SVKLLKLFLSKGADVNECDFYGFTAF 109
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG----CNEAAKLL 104
T L +A E++K LL+ G D A + G L A + LL
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 105 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLS 163
L HGA + + G TPL L+V V+ LLE + + + D++GKT L L+
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKK----HLGLVQRLLEQEHIEINDTDSDGKTAL-LLA 260
Query: 164 NGPGSAKLRELLLWH 178
K+ ELL
Sbjct: 261 VELKLKKIAELLCKR 275
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-25
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
N + TPLH + ++ +IV+ LL G D + G TP +AA G +
Sbjct: 32 NFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADP---VLRKKNGATPFLLAAIAGSVKL 87
Query: 101 AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
KL L+ GA + G T + Y +K L + A+ + + +
Sbjct: 88 LKLFLSKGADVNECDFYGFTAFMEAAVYG----KVKALKFLYKRGANVNLRRKTKEDQER 143
Query: 161 HLSNG 165
G
Sbjct: 144 LRKGG 148
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 3e-20
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 49 QTPLHVSAGYN----KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
+ L + + I LL+ ++ + G+TPL +A + + L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 105 LAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153
L I ++G T L L+V + + + L + A D
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVEL--KLKK--IAELLCKRGASTDCGDL 284
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 4e-19
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKT 140
+ L A +N + + LL GA + + G TPLH +V S ED V+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS--RED--IVEL 57
Query: 141 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
LL + AD + G TP L+ GS KL +L L
Sbjct: 58 LLRHGADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSK 94
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-29
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T L+ + +IV+ L P +EL QN G+T LH AA G + +LLLA G
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPN---IELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
A + + ++ + S +K +A + + E S+
Sbjct: 164 ARTDLRNIEKKLAFDMATNAACAS----LLKKKQGTDAVRTLSNAEDYLDD-EDSDLEH 217
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 9e-23
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T + ++ S Q + PLH AAK G + L +
Sbjct: 46 DTNWWKGTSKGRTGLIPSNYVA---------EQAESIDNPLHEAAKRGNLSWLRECLDNR 96
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNGPG 167
+ G T L+ + +D V+ L + N + + ++ G T L H + G
Sbjct: 97 VGVNGLDKAGSTALYWACHGG--HKD--IVEMLFTQPNIELNQQNKLGDTAL-HAAAWKG 151
Query: 168 SAKLRELLLWH 178
A + +LLL
Sbjct: 152 YADIVQLLLAK 162
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-19
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 14/130 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
Q + + + L G+ + +T G L
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGD----IIYITDMSDTNWWKGTSKGR-----TGLIPS 63
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
++ +A + PLH + + ++ L+ + D G T L + + G
Sbjct: 64 NYVAEQAESIDNPLHEAAKR--GNLS--WLRECLDNRVGVNGLDKAGSTAL-YWACHGGH 118
Query: 169 AKLRELLLWH 178
+ E+L
Sbjct: 119 KDIVEMLFTQ 128
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 10/101 (9%)
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 137
G+ + A L I + T +
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT---------SK 55
Query: 138 VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+T L + + + PL H + G+ L +
Sbjct: 56 GRTGLIPSNYVAEQAESIDNPL-HEAAKRGNLSWLRECLDN 95
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-29
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LH++A E+V+ LL N ++++ Q+ G TP+ A + + KLLL+ G
Sbjct: 78 STCLHLAAKKGHYEVVQYLLS---NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
+ I + N LH + + D + LL D A + G +PL H++
Sbjct: 135 SDINIRDNEENICLHWAAFSG--CVD--IAEILLAAKCDLHAVNIHGDSPL-HIAARENR 189
Query: 169 AKLRELLLWH 178
L L
Sbjct: 190 YDCVVLFLSR 199
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-28
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TP+ + Y ++VK LL G+D ++ LH AA +GC + A++LLA
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSK-GSDI---NIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
+ A +G +PLH++ + D V L ++D + K+ EG+TPL
Sbjct: 168 CDLHAVNIHGDSPLHIAAREN--RYD--CVVLFLSRDSDVTLKNKEGETPLQ 215
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 4e-27
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++PLH +A +I L++ ++ + TPL AA+N EA K L+ G
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPG 167
A ++ K G T LHL+ Y V+ LL D + +D+ G TP+ +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKG----HYEVVQYLLSNGQMDVNCQDDGGWTPM-IWATEYK 122
Query: 168 SAKLRELLLWH 178
L +LLL
Sbjct: 123 HVDLVKLLLSK 133
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 95.6 bits (239), Expect = 1e-22
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
LH +A +I + LL K +L A N++G++PLH+AA+ + L L+
Sbjct: 145 NICLHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147
+ + K G TPL + S + + + D
Sbjct: 201 SDVTLKNKEGETPLQCASLNS----QVWSALQMSKALQD 235
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 1e-21
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 135
+ + ++ +PLH AA+ G + +L+ GA I+ + + TPL + +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHLE- 58
Query: 136 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
VK L++ A KD EG T L HL+ G ++ + LL +
Sbjct: 59 -AVKYLIKAGALVDPKDAEGSTCL-HLAAKKGHYEVVQYLLSN 99
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-29
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
+ G A GD+ +RLL + N +T L V + I LL+ G
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQVMM-FGSTAIALELLK-QGASP 61
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 135
Q+ G +P+H AA+ G + K+L+ HGA + G P+HL+V
Sbjct: 62 ---NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG--HTA- 115
Query: 136 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V L +D +D G TPL L+ G+ L ++L H
Sbjct: 116 -VVSFLAA-ESDLHRRDARGLTPL-ELALQRGAQDLVDILQGH 155
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-28
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
L +A + V+ LL V +A N +G+T L + G A LL GA
Sbjct: 4 DRLSGAAARGDVQEVRRLLHREL---VHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169
+ +G +P+H + D T+K L+E+ AD + D G P+ HL+ G
Sbjct: 60 SPNVQDTSGTSPVHDAARTG--FLD--TLKVLVEHGADVNVPDGTGALPI-HLAVQEGHT 114
Query: 170 KLRELLLWH 178
+ L
Sbjct: 115 AVVSFLAAE 123
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
Score = 78.2 bits (194), Expect = 2e-17
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 85 GETPLHMAAKNG-CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143
L AA G E +LL +A G T L + ++ S A LL+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-----AIALELLK 56
Query: 144 YNADCSAKDNEGKTPL 159
A + +D G +P+
Sbjct: 57 QGASPNVQDTSGTSPV 72
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-29
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L +A E + SLL+ + AQN +G T L + G E A+ LL G
Sbjct: 6 GNELASAAARGDLEQLTSLLQN-NVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRG 60
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + K G +H + D T++TLLE+ AD + +DNEG PL HL+ G
Sbjct: 61 ANPDLKDRTGFAVIHDAARA--GFLD--TLQTLLEFQADVNIEDNEGNLPL-HLAAKEGH 115
Query: 169 AKLRELLLWH 178
++ E L+ H
Sbjct: 116 LRVVEFLVKH 125
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-26
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T L V EI + LL G + + ++ G +H AA+ G + + LL
Sbjct: 39 RTALQV-MKLGNPEIARRLLL-RGANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPG 167
A + + N G PLHL+ V+ L+++ A + ++++G T L+ G
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEG--HLR--VVEFLVKHTASNVGHRNHKGDTAC-DLARLYG 148
Query: 168 SAKLRELLLWH 178
++ L+ +
Sbjct: 149 RNEVVSLMQAN 159
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 88.6 bits (221), Expect = 5e-21
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
L AA G E LL + + A+ G T L + + + LL
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-----EIARRLLLR 59
Query: 145 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
A+ KD G + H + G + LL
Sbjct: 60 GANPDLKDRTGFAVI-HDAARAGFLDTLQTLLEF 92
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 70.5 bits (174), Expect = 1e-14
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
PLH++A +V+ L++ + + +N G+T +A G NE L+ A+G
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK---HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Query: 109 A 109
A
Sbjct: 161 A 161
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 5e-05
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 115 ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
A L + D + +LL+ N + +A++ G+T L
Sbjct: 2 AEPWGNELASAAARG----DLEQLTSLLQNNVNVNAQNGFGRTAL 42
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 5e-29
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+ + VK + G D G PLH AA G E + LL GA
Sbjct: 9 KEFMWALKNGDLDEVKDYVA-KGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
I A + +TPL +V+ + VK LL AD + K +G T +
Sbjct: 65 DINAPDKHHITPLLSAVYEG----HVSCVKLLLSKGADKTVKGPDGLTAFE 111
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 89.8 bits (224), Expect = 7e-22
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ PLH +A + EI++ LL G D A + + TPL A G KLLL+ G
Sbjct: 41 RKPLHYAADCGQLEILEFLLL-KGADI---NAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Query: 109 AFIEAKANNGMTPLHL 124
A K +G+T
Sbjct: 97 ADKTVKGPDGLTAFEA 112
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 5e-21
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139
+ A KNG + K +A G + G PLH + + E ++
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG-QLE---ILE 57
Query: 140 TLLEYNADCSAKDNEGKTPL 159
LL AD +A D TPL
Sbjct: 58 FLLLKGADINAPDKHHITPL 77
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 3e-07
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
TPL + VK LL G DK + G T
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLS-KGADK---TVKGPDGLTAFEATDNQAIKA 120
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 8e-29
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH++A N+ E+ +SLL++ A+++ G TPLH+AA+ G E LLL+
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQY----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A +G+TPLHL L+++ A G TPL H+++ G+
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEG----HVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGN 323
Query: 169 AKLRELLLWH 178
KL + LL H
Sbjct: 324 IKLVKFLLQH 333
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH++A AE+V LL + N G TPLH+ A+ G A +L+ HG
Sbjct: 246 VTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
++A G TPLH++ Y + VK LL++ AD +AK G +PL H + G
Sbjct: 302 VMVDATTRMGYTPLHVASHY--GNIK--LVKFLLQHQADVNAKTKLGYSPL-HQAAQQGH 356
Query: 169 AKLRELLLWH 178
+ LLL +
Sbjct: 357 TDIVTLLLKN 366
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLHV+ +N +IVK LL + G TPLH+AAK E A+ LL +G
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPR----GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A++ G+TPLHL+ V LL A+ + + G TPL HL G
Sbjct: 236 GSANAESVQGVTPLHLAAQEG----HAEMVALLLSKQANGNLGNKSGLTPL-HLVAQEGH 290
Query: 169 AKLRELLLWH 178
+ ++L+ H
Sbjct: 291 VPVADVLIKH 300
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLHV++ IVK+LL+ N+ ETPLHMAA+ G E AK LL +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + AKA + TPLH + R VK LLE NA+ + G TPL H++ G
Sbjct: 71 AKVNAKAKDDQTPLH----CAARIGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGH 125
Query: 169 AKLRELLL 176
+ LL
Sbjct: 126 VETVLALL 133
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 6e-27
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH++A E V +LLE + G TPLH+AAK G A+LLL
Sbjct: 114 HTPLHIAAREGHVETVLALLEK----EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A A NG+TPLH++V ++ + VK LL + G TPL H++
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHN----NLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQ 224
Query: 169 AKLRELLLWH 178
++ LL +
Sbjct: 225 VEVARSLLQY 234
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-26
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
QTPLH +A +VK LLE + G TPLH+AA+ G E LL
Sbjct: 81 QTPLHCAARIGHTNMVKLLLE----NNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A G TPLH++ Y + LLE +A +A G TPL H++ +
Sbjct: 137 ASQACMTKKGFTPLHVAAKYG----KVRVAELLLERDAHPNAAGKNGLTPL-HVAVHHNN 191
Query: 169 AKLRELLL 176
+ +LLL
Sbjct: 192 LDIVKLLL 199
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 7e-24
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLHV++ Y ++VK LL+ + ++ A+ G +PLH AA+ G + LLL +G
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL---LEYNADCSAKDNEGKTPLD----H 161
A +++G TPL ++ + L + + D + +
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLG----YISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI 423
Query: 162 LSNG 165
L
Sbjct: 424 LDVS 427
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-20
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 135
+ G TPLH+A+ G K LL GA TPLH++ +
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTE- 61
Query: 136 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
K LL+ A +AK + +TPL H + G + +LLL +
Sbjct: 62 -VAKYLLQNKAKVNAKAKDDQTPL-HCAARIGHTNMVKLLLEN 102
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 9e-09
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 107 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166
G +G+TPLH++ + VK LL+ A + + + +TPL H++
Sbjct: 3 PGISGGGGGESGLTPLHVASFMG----HLPIVKNLLQRGASPNVSNVKVETPL-HMAARA 57
Query: 167 GSAKLRELLLWH 178
G ++ + LL +
Sbjct: 58 GHTEVAKYLLQN 69
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 9e-29
Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 11/166 (6%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
+Q + + L N TPLHV+ + AE+V+ L +
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDA----G 181
Query: 76 VELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED 134
+L G TPLH+A + +LLL GA A+ G TPL ++ +
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP----N 237
Query: 135 YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180
+ L + A + +P S + R+ + +
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPC-SSSGSDSDSDNRDEGDEYDD 282
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-27
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LH++ + + LL L+ QN G+T LH+AA G + L A G
Sbjct: 10 DTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165
A + G T LHL+ R+ LL+ ++
Sbjct: 69 AGVLVAERGGHTALHLACRV--RAHT--CACVLLQPRPSHPRDASDTYLTQSQDCTP 121
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-26
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 36 NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95
+ + P + P V + N + E ++LEA+N G TPLH+A +
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR---LQLEAENYDGHTPLHVAVIH 168
Query: 96 GCNEAAKLLLAHGAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 154
E +LL GA + G TPLHL+V + ++ LL+ AD +A+
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ--AAS--VLELLLKAGADPTARMYG 224
Query: 155 GKTPLDHLSNGPGSAKLRELLLWH 178
G+TPL + + L LL H
Sbjct: 225 GRTPL-GSALLRPNPILARLLRAH 247
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-22
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 36 NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95
L+ +N + QT LH++A +A V+ L + G T LH+A +
Sbjct: 34 GHEYLDLQN-DLGQTALHLAAILGEASTVEKLYA----AGAGVLVAERGGHTALHLACRV 88
Query: 96 GCNEAAKLLLAHGAFIEAKAN-------------NGMTPLHLSVWYSIRSEDYATVKTLL 142
+ A +LL A+ P + + +E
Sbjct: 89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE---EEPRDE 145
Query: 143 EYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
++ A++ +G TPL H++ A++ LL
Sbjct: 146 DWRLQLEAENYDGHTPL-HVAVIHKDAEMVRLLR 178
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA---FIEAKANNGMTPLHLSVWYSIRSED 134
G+T LH+A + LL A +++ + + G T LHL+
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL--GEAS 59
Query: 135 YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
TV+ L A + G T L HL+ + +LL
Sbjct: 60 --TVEKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQP 100
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
+ A+SG+ LL + + TPLH++AGYN+ IV+ LL+
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTPLHLAAGYNRVRIVQLLLQH----G 81
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 135
++ A++ G PLH A G E +LLL HGA + A TPLH + + +
Sbjct: 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKN--RVE- 138
Query: 136 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
LL + AD + + GK+ + ++ P +
Sbjct: 139 -VCSLLLSHGADPTLVNCHGKSAV-DMAPTPELRERLTYEF 177
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAG---YNKAEIVKSLLEWPG 72
++ A+ DL ++ L + +T LH + + ++ + LL
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQ--SHETALHCAVASLHPKRKQVAELLL---- 234
Query: 73 NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRS 132
+ +N TPLH+AA+ N+ ++L HGA + A + G T LH +
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG--- 291
Query: 133 EDYATVKTLLEYNADCSAKDNEGKTPLD 160
T + LL Y +D S +G T
Sbjct: 292 -HLQTCRLLLSYGSDPSIISLQGFTAAQ 318
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
L + N+ +++ L V A + TPLH+AA +LLL HGA
Sbjct: 27 ELLEAARSGNEEKLMALLTP----LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169
+ AK G+ PLH + Y Y + LL++ A +A D TPL H +
Sbjct: 83 DVHAKDKGGLVPLHNACSYG----HYEVTELLLKHGACVNAMDLWQFTPL-HEAASKNRV 137
Query: 170 KLRELLLWH 178
++ LLL H
Sbjct: 138 EVCSLLLSH 146
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLHV+A ++++ L + ++ A + G+T LH AA G + +LLL++G
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKH----GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 157
+ + G T + V+ +L + D + +
Sbjct: 304 SDPSIISLQGFTAAQMGN---------EAVQQILSESTPMRTSDVDYRL 343
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 2e-24
Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 25/150 (16%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
PLH + Y E+ + LL+ + A +++ TPLH AA E LLL+HG
Sbjct: 92 LVPLHNACSYGHYEVTELLLKH----GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 109 AFIEAKANNGMTPLHLSVWY-----------------SIRSEDYATVKTLLEYNADCSAK 151
A +G + + ++ + R D A VK L +
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207
Query: 152 DNEGKTPLDHL---SNGPGSAKLRELLLWH 178
+T L H S P ++ ELLL
Sbjct: 208 PQSHETAL-HCAVASLHPKRKQVAELLLRK 236
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 79 EAQNMYGETPLHMAA-KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 137
Y + L AA + LL A TPLHL+ Y
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY--NRVR--I 73
Query: 138 VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V+ LL++ AD AKD G PL H + G ++ ELLL H
Sbjct: 74 VQLLLQHGADVHAKDKGGLVPL-HNACSYGHYEVTELLLKH 113
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 17/95 (17%)
Query: 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143
+G++ L L A L + + + L
Sbjct: 3 FGKSALD-------------LADPSAKAVLTGEYKKDELL---EAARSGNEEKLMALLTP 46
Query: 144 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
N +C A D TPL HL+ G ++ +LLL H
Sbjct: 47 LNVNCHASDGRKSTPL-HLAAGYNRVRIVQLLLQH 80
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-28
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
++ + TPLH + +V L+++ + + G + +H+AA+ G
Sbjct: 69 DQLGGDLNSTPLHWATRQGHLSMVVQLMKY----GADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 101 AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPL 159
L+A G ++ NGMTPL + + + + + LL +N + D T L
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD---PTRLLLTFNVSVNLGDKYHKNTAL 181
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-27
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ + Y E + L+E G D + T LH AA N + K ++ G
Sbjct: 10 TWDIVKATQYGIYERCRELVEA-GYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 109 AFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
A ++ + TPLH + V L++Y AD S D EG + +
Sbjct: 66 AIVDQLGGDLNSTPLHWATRQG--HLS--MVVQLMKYGADPSLIDGEGCSCI 113
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 3e-25
Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 11/132 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-CNEAAKLLLAH 107
+ +H++A + IV L+ +++ + G TPL AA + +LLL
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAK----GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 108 GAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166
+ + T LH +V + + LLE A+ A++ +G++ L L+
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAG----NTTVISLLLEAGANVDAQNIKGESAL-DLAKQR 220
Query: 167 GSAKLRELLLWH 178
+ + L
Sbjct: 221 KNVWMINHLQEA 232
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 1e-21
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 49 QTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLA 106
TPL +A + + + LL + V + + T LH A G LLL
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTF----NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 107 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152
GA ++A+ G + L L+ ++ + L E +
Sbjct: 199 AGANVDAQNIKGESALDLAKQR--KNVW--MINHLQEARQAKGYDN 240
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 84.0 bits (209), Expect = 1e-18
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 137
+ + Y + A + G E + L+ G + +T LH + +
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN----RIDL 57
Query: 138 VKTLLEYNADCSAKDNE-GKTPL 159
VK + A + TPL
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPL 80
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 1e-13
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 40 LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
+N + T LH + ++ LLE ++AQN+ GE+ L +A +
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVW 224
Query: 100 AAKLLLAHGAFIEAK 114
L
Sbjct: 225 MINHLQEARQAKGYD 239
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-28
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TP H++ E+VKSL + K +L G T LH+A E ++ L+ +G
Sbjct: 73 WTPFHIACSVGNLEVVKSLYD--RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDHLSNGPG 167
A + K PLH + S ++ L + + +D +G TPL + G
Sbjct: 131 ASVRIKDKFNQIPLHRAASVG--SLK--LIELLCGLGKSAVNWQDKQGWTPL-FHALAEG 185
Query: 168 SAKLRELLL 176
LL+
Sbjct: 186 HGDAAVLLV 194
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LH++ G E+ + L+E + + ++ + + PLH AA G + +LL G
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Query: 109 -AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGP 166
+ + + G TPL ++ D L+E Y A+ DN+G D N
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEG--HGD--AAVLLVEKYGAEYDLVDNKGAKAEDVALNE- 218
Query: 167 GSAKLRELLLWH 178
++++ L +
Sbjct: 219 ---QVKKFFLNN 227
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
M+ PLH + N+ V+ LL + ++ G PLH + +E LL+
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLL---LQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Query: 107 HGAFI---EAKANNGMTPLHLSVWYSIRSEDYATVKTLLE--YNADCSAKDNEGKTPLDH 161
+ + ++G TP H++ + VK+L + D + N+G T L H
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVG----NLEVVKSLYDRPLKPDLNKITNQGVTCL-H 112
Query: 162 LSNGPGSAKLRELLLWH 178
L+ G ++ + L+ +
Sbjct: 113 LAVGKKWFEVSQFLIEN 129
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 5e-28
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+P+H +A E V SL+ + ++ + + TPL++A +N K LL G
Sbjct: 158 ASPIHEAARRGHVECVNSLIAY----GGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
A + + +PLH V + SE+ L+++ AD AK+ EGK P++
Sbjct: 214 ADVN-QGKGQDSPLHAVVRTA--SEE--LACLLMDFGADTQAKNAEGKRPVE 260
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG 72
K + G +G L NP + + + +P+H +A + +++L+
Sbjct: 27 KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS---DWSPMHEAAIHGHQLSLRNLIS--- 80
Query: 73 NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRS 132
+ +PLH A G K+LL HGA + + TPL + S
Sbjct: 81 -QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG--S 137
Query: 133 EDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
D V LL++ A + + +P+ H + G + L+ +
Sbjct: 138 WD--CVNLLLQHGASVQPESD-LASPI-HEAARRGHVECVNSLIAY 179
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPL + + V LL+ ++ ++ +P+H AA+ G E L+A+G
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQH----GASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
I+ K ++ TPL+L+ + VK LLE AD + + +PL H S
Sbjct: 181 GNIDHKISHLGTPLYLACEN--QQRA--CVKKLLESGADVN-QGKGQDSPL-HAVVRTAS 234
Query: 169 AKLRELLLWH 178
+L LL+
Sbjct: 235 EELACLLMDF 244
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 6e-19
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPL+++ + VK LLE G D V Q ++PLH + E A LL+ G
Sbjct: 191 GTPLYLACENQQRACVKKLLES-GAD-VN---QGKGQDSPLHAVVRTASEELACLLMDFG 245
Query: 109 AFIEAKANNGMTPLHLSVWYS 129
A +AK G P+ L S
Sbjct: 246 ADTQAKNAEGKRPVELVPPES 266
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 13/126 (10%)
Query: 54 VSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 112
+ + ++ L+ + ++ + M G P G LL++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPL--M 53
Query: 113 AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172
A + +P+H + + + +++ L+ + + +PL H + G
Sbjct: 54 GDAVSDWSPMHEAAIH--GHQL--SLRNLISQGWAVNIITADHVSPL-HEACLGGHLSCV 108
Query: 173 ELLLWH 178
++LL H
Sbjct: 109 KILLKH 114
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 24/179 (13%)
Query: 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-DKV 76
A+ D+ A +LL+ +++R M +T LH++A Y+ E L+E
Sbjct: 8 LLAAKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-------------GMTPLH 123
+ ++ G+T LH+A N + LLA GA + A+A G PL
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 124 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS----NGPGSAKLRELLLWH 178
+ SE+ V+ L+E+ AD A+D+ G T L H+ N + ++ LLL +
Sbjct: 127 FAACVG--SEE--IVRLLIEHGADIRAQDSLGNTVL-HILILQPNKTFACQMYNLLLSY 180
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
QT LH++ +V++LL YGE PL AA G E
Sbjct: 76 QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135
Query: 100 AAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK------DN 153
+LL+ HGA I A+ + G T LH+ + ++ LL Y+ K +N
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195
Query: 154 EGKTPLDHLSNGPGSAKLRELLLWH 178
+G TP L+ G+ + + L+
Sbjct: 196 QGLTPF-KLAGVEGNIVMFQHLMQK 219
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 5e-24
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 26/148 (17%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++PL ++A N + + LL++ G E+ + GET LH+AA EAA +L+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEG---CEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 109 AFIE-----AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN---------- 153
+ ++ G T LH++V ++ V+ LL A SA+
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVIN----QNVNLVRALLARGASVSARATGSVFHYRPHN 116
Query: 154 ---EGKTPLDHLSNGPGSAKLRELLLWH 178
G+ PL + GS ++ LL+ H
Sbjct: 117 LIYYGEHPL-SFAACVGSEEIVRLLIEH 143
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-19
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 83 MYGETPLHMAAKNGCNEA-AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141
M E+PL +AAK +A +KLL G + + G T LH++ Y + + L
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD--NLE--AAMVL 56
Query: 142 LEYNAD-----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+E + +++ EG+T L H++ + L LL
Sbjct: 57 MEAAPELVFEPMTSELYEGQTAL-HIAVINQNVNLVRALLAR 97
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-27
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+++ E+ + +L DK + T LH A G E + LL G
Sbjct: 9 MICNLAYSGKLDELKERILA----DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169
+ K + G +PLH++ VK LL A +A + G TPL H +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRH 119
Query: 170 KLRELLLWHSEEQRKR 185
++ +LL +
Sbjct: 120 EIAVMLLEGGANPDAK 135
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 2e-23
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH + EIV+ LL+ V + ++ G +PLH+AA G +E K LL G
Sbjct: 41 RTALHWACSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + A NG TPLH + + + LLE A+ AKD+ T + H + G+
Sbjct: 97 AHVNAVNQNGCTPLHYAASKN----RHEIAVMLLEGGANPDAKDHYDATAM-HRAAAKGN 151
Query: 169 AKLRELLLWHSEEQRKR 185
K+ +LL++ +
Sbjct: 152 LKMVHILLFYKASTNIQ 168
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 4e-20
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+PLH++A EIVK+LL + A N G TPLH AA +E A +LL G
Sbjct: 74 WSPLHIAASAGXDEIVKALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A +AK + T +H + + V LL Y A + +D EG TPL HL+
Sbjct: 130 ANPDAKDHYDATAMHRAAAKG----NLKMVHILLFYKASTNIQDTEGNTPL-HLACDEER 184
Query: 169 AKLRELLLWHSEEQRKR 185
+ + L+
Sbjct: 185 VEEAKFLVTQGASIYIE 201
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 5e-19
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141
+ ++A +E + +LA + + T LH + V+ L
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG----HTEIVEFL 59
Query: 142 LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185
L+ + KD+ G +PL H++ G ++ + LL
Sbjct: 60 LQLGVPVNDKDDAGWSPL-HIAASAGXDEIVKALLVKGAHVNAV 102
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 2e-17
Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 9/152 (5%)
Query: 20 CAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79
A S + L + +N N TPLH +A N+ EI LLE N +
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGAN----PD 133
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139
A++ Y T +H AA G + +LL + A + G TPLHL+ K
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE----RVEEAK 189
Query: 140 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171
L+ A ++ E KTPL G G
Sbjct: 190 FLVTQGASIYIENKEEKTPLQVAKGGLGLILK 221
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 1e-13
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 11/147 (7%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK 60
+ K + + T A S + +L E + + ++ T +H +A
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGN 151
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120
++V LL K Q+ G TPLH+A E AK L+ GA I + T
Sbjct: 152 LKMVHILLF----YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Query: 121 PLHLSVWYSIRSEDYATVKTLLEYNAD 147
PL ++ + L +
Sbjct: 208 PLQVA------KGGLGLILKRLAEGEE 228
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 114 KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRE 173
+ + +L+ + + +L + + D + +T L H + G ++ E
Sbjct: 3 GCVSNIMICNLAYSGKLDE----LKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVE 57
Query: 174 LLLWH 178
LL
Sbjct: 58 FLLQL 62
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDK---------------VEL--------EAQNMYG 85
TPL ++ E++++ + G D + G
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199
Query: 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145
T LH+AA G E KLL+ + K +G TPLH + + E+ + L+E
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG--KEE--ACRILVENL 255
Query: 146 ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS---EEQRKRR 186
D A + G+T +++ L EL + E+R+++
Sbjct: 256 CDMEAVNKVGQTAF-DVADEDILGYLEELQKKQNLLHSEKREKK 298
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ E V LLE ++ N+ G T LH A + + K L+ +G
Sbjct: 41 GAVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
A I N G PLH + + L+ A A ++EG TPLD
Sbjct: 97 ANINQPDNEGWIPLHAAASCG----YLDIAEYLISQGAHVGAVNSEGDTPLDI 145
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-24
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 28/153 (18%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LH + + ++VK L+E + + + G PLH AA G + A+ L++ G
Sbjct: 74 LTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 109 AFIEAKANNGMTPLHLSVWY----------SIRSED-------------YATVKTLLEYN 145
A + A + G TPL ++ + + D + L +
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 146 ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+ G T L H++ G ++ +LL+
Sbjct: 190 INDVRHAKSGGTAL-HVAAAKGYTEVLKLLIQA 221
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+ + ++ + + + + + G A +G E LL
Sbjct: 8 QKRNEQLKRWIGSETDLEPPVV----KRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
GA I +G+T LH + + D VK L+E A+ + DNEG PL
Sbjct: 63 GADINYANVDGLTALHQACIDD--NVD--MVKFLVENGANINQPDNEGWIPL 110
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 137
++ + + + G + + + K ++G L S D
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAAC-----SSGDTEE 55
Query: 138 VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V LLE AD + + +G T L H + + + + L+ +
Sbjct: 56 VLRLLERGADINYANVDGLTAL-HQACIDDNVDMVKFLVEN 95
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-26
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ LH++ + + + ++ D L QN +TPLH+A E A+ LL G
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS------AKDNEGKTPLDHL 162
E + G TPLHL+ A+V L + A + G T L HL
Sbjct: 69 CDPELRDFRGNTPLHLACEQG----CLASVGVLTQSCTTPHLHSILKATNYNGHTCL-HL 123
Query: 163 SNGPGSAKLRELLLWH 178
++ G + ELL+
Sbjct: 124 ASIHGYLGIVELLVSL 139
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 6e-26
Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74
A GC S +L S+L N T LH+++ + IV+ L+
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATN-YNGHTCLHLASIHGYLGIVELLVSL---- 139
Query: 75 KVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE 133
++ AQ G T LH+A + LLL GA + G +P L+
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP---- 195
Query: 134 DYATVKTLLEYNADCSAKDNEGKTPLD 160
+ L + + E +
Sbjct: 196 STRIQQQLGQLTLENLQMLPESEDEES 222
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 5e-22
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 79 EAQNMYGETPLHMAAKNGCNEAA----KLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED 134
+ G++ LH+A + + + AF+ + N TPLHL+V +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPE 59
Query: 135 YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEA 190
+ LL D +D G TPL HL+ G +L L+A
Sbjct: 60 --IAEALLGAGCDPELRDFRGNTPL-HLACEQGCLASVGVLTQSCTTPHLHSILKA 112
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 3e-16
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
N + P +T LH++ ++V LL+ ++ G +P +
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLK----CGADVNRVTYQGYSPYQLTWGRPSTRI 199
Query: 101 AKLLLAHGAFIEAKANNGMTPLHLSV 126
+ L
Sbjct: 200 QQQLGQLTLENLQMLPESEDEESYDT 225
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 101
+P ++ G I + L + + ++ E ++ E
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQ-LTLENLQ---MLPESEDEESYDTESEFTEFT 233
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L +A + E V+ LLE + A N +G P+ + G + A+LLL HG
Sbjct: 13 DAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHG 67
Query: 109 AFIEAKANNGMT-PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
A +T P+H + D T+ L A D G+ P+
Sbjct: 68 AEPNCADPATLTRPVHDAAREG--FLD--TLVVLHRAGARLDVCDAWGRLPV 115
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 84.4 bits (210), Expect = 8e-20
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 79 EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATV 138
+ L AA G E + LL GA A G P+ + + S +
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ-----VA 60
Query: 139 KTLLEYNADCSAKDNEGKT-PLDHLSNGPGSAKLRELLL 176
+ LL + A+ + D T P+ H + G +L
Sbjct: 61 ELLLLHGAEPNCADPATLTRPV-HDAAREGFLDTLVVLH 98
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 84.4 bits (210), Expect = 9e-20
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAH 107
+ P+ V A++ + LL G + + T P+H AA+ G + +L
Sbjct: 46 RRPIQV-MMMGSAQVAELLLLH-GAEP---NCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147
GA ++ G P+ L+ + L D
Sbjct: 101 GARLDVCDAWGRLPVDLAEEQ----GHRDIARYLHAATGD 136
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 1e-13
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
N +P P+H +A + + L L+ + +G P+ +A + G +
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRA----GARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 101 AKLLLAHGA 109
A+ L A
Sbjct: 127 ARYLHAATG 135
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 49.7 bits (120), Expect = 1e-07
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165
I + L + TV+ LLE AD +A + G+ P+ + G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARG----QVETVRQLLEAGADPNALNRFGRRPIQVMMMG 55
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 10/131 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG-ETPLHMAAKNGCNEAAKLLLAH 107
T L+ + + VK ++ L G +T + A L+
Sbjct: 96 NTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
++ +H+++ D + LL+Y + ++ P L+
Sbjct: 152 IP-STFDLAILLSCIHITIKNG--HVD--MMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206
Query: 168 SAKLRELLLWH 178
++ + L +
Sbjct: 207 DIEMLQALFKY 217
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-24
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 12/131 (9%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ + + N +V +LL E PLH AA + K+LL G
Sbjct: 32 HSASYYAIADNNVRLVCTLLNA----GALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPLDHLSNGPG 167
+ G T L+ +V + TVK ++ N G KT + +
Sbjct: 86 LDDSQFDDKGNTALYYAVDS--GNMQ--TVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLN 140
Query: 168 SAKLRELLLWH 178
+ L
Sbjct: 141 DVSIVSYFLSE 151
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-22
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 14/130 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
++ K++ +KS L + +++G + + A + LL G
Sbjct: 2 MDLSRINTW--KSKQLKSFLS-----SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG 54
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A PLH + D VK LL D S D++G T L + + G+
Sbjct: 55 ALKNLL--ENEFPLHQAATLE----DTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGN 107
Query: 169 AKLRELLLWH 178
+ +L +
Sbjct: 108 MQTVKLFVKK 117
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-21
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
+T + + N IV L + +H+ KNG +
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST----FDLAILLSCIHITIKNGHVDM 176
Query: 101 AKLLLAHGAFIEAKANNGMTP-LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155
LLL + + P + L++ D ++ L +Y+ + + + E
Sbjct: 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNK----DIEMLQALFKYDINIYSANLEN 228
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 17/129 (13%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP-LHMAAKNGCNEAAKLLLAH 107
+ +H++ +++ LL+ N P + +A N E + L +
Sbjct: 162 LSCIHITIKNGHVDMMILLLD----YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
N + +V D K ++E + + + + +N
Sbjct: 218 DI-------NIYSANLENVLLD----DAEIAKMIIEKHVEYKSDSYTKDLDI-VKNNKLD 265
Query: 168 SAKLRELLL 176
+ L
Sbjct: 266 EIISKNKEL 274
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 9/106 (8%), Positives = 31/106 (29%), Gaps = 16/106 (15%)
Query: 49 QTP-LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
P + ++ E++++L + + + E AK+++
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFK-YDIN----------IYSANLENVLLDDAEIAKMIIEK 243
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153
++ + + + + ++ + L K N
Sbjct: 244 HVEYKSDSYTKDLDIV----KNNKLDEIISKNKELRLMYVNCVKKN 285
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
L +A + E V++LLE A N YG P+ + G A+LLL HGA
Sbjct: 14 DWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA 68
Query: 110 FIEAKANNGMT-PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
+T P+H + T+ L A +D G+ P+D
Sbjct: 69 EPNCADPATLTRPVHDAAREG----FLDTLVVLHRAGARLDVRDAWGRLPVD 116
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 6e-22
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 11/116 (9%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAH 107
+ P+ V A + + LL G + + T P+H AA+ G + +L
Sbjct: 46 RRPIQV-MMMGSARVAELLLLH-GAEP---NCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD-HL 162
GA ++ + G P+ L+ + L ++ +
Sbjct: 101 GARLDVRDAWGRLPVDLAEEL----GHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 4e-18
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139
+ L AA G E + LL GA A + G P+ + + S R +
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR-----VAE 61
Query: 140 TLLEYNADCSAKDNEGKT-PL 159
LL + A+ + D T P+
Sbjct: 62 LLLLHGAEPNCADPATLTRPV 82
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 2e-16
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA 100
N +P P+H +A + + L L+ ++ +G P+ +A + G +
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRA----GARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 101 AKLLLAHGAFIEAKANNGMTPLH 123
A+ L A + +
Sbjct: 127 ARYLRAAAGGTRGSNHARIDAAE 149
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 5/53 (9%), Positives = 15/53 (28%), Gaps = 9/53 (16%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 101
+ P+ ++ ++ + L G + A G ++
Sbjct: 112 RLPVDLAEELGHRDVARYLRAA-AGGT--------RGSNHARIDAAEGPSDIP 155
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 15/140 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVE----LEAQNMYGETPLHMAAKNGCNEAAKLL 104
+T LH A + AE + L+ + + + A + TPL +A L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185
Query: 105 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDH 161
+ GA + + LH + D+ + +L D D G T L
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANR----DFGMMVYMLNSTKLKGDIEELDRNGMTAL-M 240
Query: 162 L---SNGPGSAKLRELLLWH 178
+ + G +LL+
Sbjct: 241 IVAHNEGRDQVASAKLLVEK 260
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH +A + IVK L+ G++K + Q+ G+TP+ +AA+ G E L+ G
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNK---DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147
A +EA T L+ + V +
Sbjct: 337 ASVEAVDATDHTARQLAQAN--NHHN--IVDIFDRCRPE 371
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 5e-23
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 13/138 (9%)
Query: 49 QTPLHVSAGYNKAE---IVKSLLE----WPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 101
T L + A + K L+E + +++ G T LH AA+
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295
Query: 102 KLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
K L+ G+ + + +G TP+ L+ V L++ A A D T
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQEG----RIEVVMYLIQQGASVEAVDATDHTAR- 350
Query: 161 HLSNGPGSAKLRELLLWH 178
L+ + ++
Sbjct: 351 QLAQANNHHNIVDIFDRC 368
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-19
Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 26/172 (15%)
Query: 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLE 69
R+ K I+ + ++ + + S+ + Q L ++ + ++ L
Sbjct: 5 RTRKRRMINASVWMPPMENEEKNRKNHQSITSS------QHSLLEASYDGYIKRQRNEL- 57
Query: 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129
Y P NG + + LH S
Sbjct: 58 ------------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS 105
Query: 130 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181
YA + + + + +T L H SA+ E L+ H +
Sbjct: 106 -----YAITEPITRESVNI-IDPRHNRTVL-HWIASNSSAEKSEDLIVHEAK 150
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TP+ ++A + E+V L++ +EA + T +A N + +
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369
Query: 109 AFIE 112
E
Sbjct: 370 PERE 373
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
PL++S + K LL+ P ++ + + + AA E
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304
Query: 100 AAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
+LL + N G + A + L +A +
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGAVKRKKKA----APAVKRMKLAPSAPVRTRSRSRARSS 360
Query: 160 D 160
Sbjct: 361 A 361
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 8/121 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
+TPL + + E + +++ + + L+ N G + LH A + A +
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD---CSAKDNEGKTPLDHLSN 164
G + + N PL+LSV + K LL+ + + G T L
Sbjct: 234 GIDVNMEDNEHTVPLYLSVRAA----MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289
Query: 165 G 165
Sbjct: 290 W 290
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 30/136 (22%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGND------------------KVELEAQNMYGETPLH 90
Q P+H++ NK ++V +L+E + ++ ++ G+T LH
Sbjct: 85 QKPIHLAVMANKTDLVVALVE-GAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 91 MAAKNGCN--EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN--- 145
G E K+L+ GA AK TPL ++ + R+ + + +++
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF--RNRE--ALDLMMDTVPSK 199
Query: 146 --ADCSAKDNEGKTPL 159
+ +G + L
Sbjct: 200 SSLRLDYANKQGNSHL 215
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-22
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 34/153 (22%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+HV+A + + V+ L+E V QN +G T LH+A K GC + AK L + G
Sbjct: 21 MEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD--------------------- 147
+G P+HL+V D V L+E +
Sbjct: 77 EVHSLW--HGQKPIHLAVMA--NKTD--LVVALVEGAKERGQMPESLLNECDEREVNEIG 130
Query: 148 CSAKDNEGKTPLDHL--SNGPGSAKLRELLLWH 178
K +G+T L H GP ++ ++L+
Sbjct: 131 SHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQL 162
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 30/149 (20%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LH++ + + K L G + G+ P+H+A + L+
Sbjct: 54 CTALHLACKFGCVDTAKYLAS-VGEVH---SLWH--GQKPIHLAVMANKTDLVVALVEGA 107
Query: 109 A-----------------FIEAKAN----NGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147
E ++ G T LH V + +K L++ A
Sbjct: 108 KERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLE--MIKILVQLGAS 165
Query: 148 CSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
+AKD +TPL + + + +L++
Sbjct: 166 PTAKDKADETPL-MRAMEFRNREALDLMM 193
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED 134
K+ + +H+AA+ G + + L+ G + G T LHL+ + D
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF--GCVD 67
Query: 135 YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
T K L S G+ P+ HL+ L L+
Sbjct: 68 --TAKYLASVGEVHSLWH--GQKPI-HLAVMANKTDLVVALV 104
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ +A +K E+++ L E E+ G K ++ LA
Sbjct: 291 LDFVPAAADPSKQEVLQLLQE----KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346
Query: 109 AFIEAKANNGMTPLHLS 125
A + ++ + +S
Sbjct: 347 APVRTRSRSRARSSAVS 363
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 101 AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
+ + M +H++ V+ L+E + ++ G T L
Sbjct: 3 GSMTDFPKLNRIKSDDENMEKIHVAARKG----QTDEVRRLIETGVSPTIQNRFGCTAL- 57
Query: 161 HLSNGPGSAKLRELLLWH 178
HL+ G + L
Sbjct: 58 HLACKFGCVDTAKYLASV 75
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-25
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
L +A + E+V+ ++ ND N G T LH A L+ GA
Sbjct: 23 VLLLDAALTGELEVVQQAVKE-MNDP---SQPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDH 161
+ + ++G TPLH + + D L+++ A A ++G T +
Sbjct: 79 NVNSPDSHGWTPLHCAASCN----DTVICMALVQHGAAIFATTLSDGATAFEK 127
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-24
Identities = 29/133 (21%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LH + IV L+ + + + +G TPLH AA L+ HG
Sbjct: 55 ITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 109 AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167
A I A ++G T Y D L + ++ L S
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYAD--CATYLADVEQSMGLMNSGAVYALWDYSAE-- 166
Query: 168 SAKLRELLLWHSE 180
EL E
Sbjct: 167 --FGDELSFREGE 177
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 1e-19
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAA--KNGCNEAAKLLL 105
TPLH +A N I +L++ + A + G T + G + A L
Sbjct: 88 WTPLHCAASCNDTVICMALVQH----GAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143
Query: 106 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
+ + + L YS +E + + +D +T
Sbjct: 144 DVEQSMGLMNSGAVYALW---DYS--AEFGDELSFREGESVTVLRRDGPEETDW 192
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 4e-19
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 64 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 123
++S+L + + L AA G E + + G+T LH
Sbjct: 1 MRSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 59
Query: 124 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
++ +Y+ V L+ A+ ++ D+ G TPL
Sbjct: 60 NAICG----ANYSIVDFLITAGANVNSPDSHGWTPL 91
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 8/91 (8%), Positives = 20/91 (21%), Gaps = 7/91 (7%)
Query: 40 LNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC 97
+ T Y + A+ L + + + N L +
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLA----DVEQSMGLMNSGAVYALWDYSAEFG 168
Query: 98 NEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
+E + + T + +
Sbjct: 169 DEL-SFREGESVTVLRRDGPEETDWWWAALH 198
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLLA 106
A L + E+ + V + ++ ET AA +G +
Sbjct: 156 AVYALWDYSAEFGDELSFRE-----GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFG 210
Query: 107 HGAFIEAKANNGMTPLH 123
++ + + H
Sbjct: 211 LFPRVKPQRSKVKHHHH 227
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-24
Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 17/172 (9%)
Query: 16 TIHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
T+ A G F L + ++ ++ L + + +I L+
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNIL-YDVLRNNNDEARYKISMFLIN---- 63
Query: 74 DKVELEAQNMYGETPLHMAAKNGCN------EAAKLLLAHGAFIEAKANNGMTPLHLSVW 127
+++++ G T + G N E K+ L GA I A + +++
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123
Query: 128 Y--SIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
+E K + + KD G T L +++
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKPIALKMME 174
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 3e-22
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 44 NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 103
N + + +A E L E G + E ++ L + +
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELFE-KGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 104 LLAHGAFIEAKANNGMTPLHLSVWYSIRS--EDYATVKTLLEYNADCSAKDNEGKTPL 159
L+ GA I+++ G T K LE AD +A K +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-17
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 21/118 (17%)
Query: 49 QTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
T E+ K LE ++ A + + N + +
Sbjct: 76 TTLFFPLFQGGGNDITGTTELCKIFLEK----GADITALYKPYKIVVFKNIFNYFVDENE 131
Query: 103 -------LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153
+ G + K G+T L + R + +K + +Y + K+N
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALE----FVKRCQKPIALKMMEDYIKKYNLKEN 185
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-14
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139
+ M + AA G E L G + ++ L+ + + Y
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGY-EDKESVLKSNILYDVLRNNNDEARYKISM 59
Query: 140 TLLEYNADCSAKDNEGKTPL 159
L+ AD ++ EG T
Sbjct: 60 FLINKGADIKSRTKEGTTLF 79
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 49 QTPLHVSAGYNKAE------IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
+ + + + + K + G L ++ +G T L + A K
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTALEFVKRCQKPIALK 171
Query: 103 LLLAHGAFIEAKANN 117
++ + K N+
Sbjct: 172 MMEDYIKKYNLKENS 186
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-24
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
Q L N + + G N L ++ G + + ++
Sbjct: 6 QVSLPPGKRTNLRKTGSERIA-HGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
+ G+T LH +V VK L+++ + +A D++G TPL
Sbjct: 61 DDPSLPNDEGITALHNAVCAG----HTEIVKFLVQFGVNVNAADSDGWTPL 107
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-24
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L S+ + ++V+ ++ +D N G T LH A G E K L+ G
Sbjct: 38 LALLLDSSLEGEFDLVQRIIY-EVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN---EGKTPLDHLSNG 165
+ A ++G TPLH + + + K L+E A A +
Sbjct: 94 VNVNAADSDGWTPLHCAASCN----NVQVCKFLVESGAAVFAMTYSDMQTAADK-CEEME 148
Query: 166 PGSAKLRELLLWH 178
G + + L
Sbjct: 149 EGYTQCSQFLYGV 161
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 4e-18
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
G+ L + + +AHG ++ + L S ++ V+ ++
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEG----EFDLVQRIIYE 59
Query: 145 NADCSAKDNEGKTPL 159
D S ++EG T L
Sbjct: 60 VDDPSLPNDEGITAL 74
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 4e-18
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 10/127 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH +A N ++ K L+E G + +M + G + ++ L
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162
Query: 109 AFIEAKANNGMTPLHL-----SVWYSIRSEDYATVKTLLEYNA----DCSAKDNEGKTPL 159
+ + L ++ D T+ + + D EG P
Sbjct: 163 EKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPR 222
Query: 160 DHLSNGP 166
+ L P
Sbjct: 223 NLLGLYP 229
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 5e-23
Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 25/152 (16%)
Query: 49 QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 99
+ LH++ + VK L+E + +GE PL +AA +
Sbjct: 91 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150
Query: 100 AAKLLLAHG---AFIEAKANNGMTPLHLSVWYSIRSEDYA------------TVKTLLEY 144
LL + A +EA + G T LH V + S + + L
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210
Query: 145 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
+++G TPL L+ G ++ +L
Sbjct: 211 VQLEEISNHQGLTPL-KLAAKEGKIEIFRHIL 241
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 4e-20
Identities = 33/179 (18%), Positives = 49/179 (27%), Gaps = 37/179 (20%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQ------TPLHVSA---GYNKAEIVKS 66
+ G LL T L + +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 67 LLE-------WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-- 117
LL+ + + G + LH+A + + KLL+ +GA + +A
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124
Query: 118 -----------GMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDHL 162
G PL L+ D V LLE A A D+ G T L H
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTK--QWD--VVTYLLENPHQPASLEATDSLGNTVL-HA 178
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 84 YGETPLHMAAKNGCNEAAKLLLAH--------GAFIEAKANNGMTPLHLSVWYSIRSEDY 135
+ L G E LL + + + G T L +V +
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNL-QDGVN 59
Query: 136 ATVKTLLEY-----------NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
A + LL+ NA C+ + +G + L H++ S + +LL+ +
Sbjct: 60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL-HIAIEKRSLQCVKLLVEN 112
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 91.6 bits (229), Expect = 7e-23
Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE G D A++ G TPLH+AA+NG E KLLL G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146
A + AK NG TPLHL+ + VK LLE A
Sbjct: 59 ADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEAGA 92
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 86.3 bits (215), Expect = 6e-21
Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
G TPLH+AA+NG E KLLL GA + AK NG TPLHL+ + VK LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEA 57
Query: 145 NADCSAKDNEGKTPL 159
AD +AKD G+TPL
Sbjct: 58 GADVNAKDKNGRTPL 72
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 69.7 bits (172), Expect = 4e-15
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+TPLH++A E+VK LLE G D A++ G TPLH+AA+NG E KLLL G
Sbjct: 36 RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 109 AF 110
A+
Sbjct: 92 AY 93
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 42.7 bits (102), Expect = 1e-05
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 117 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
NG TPLHL+ VK LLE AD +AKD G+TPL
Sbjct: 1 NGRTPLHLAARN----GHLEVVKLLLEAGADVNAKDKNGRTPL 39
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 1e-22
Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 41/196 (20%)
Query: 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLL------NERNPVMAQTPLHV 54
+K R +I + + LL ++P +T L
Sbjct: 5 GEKPPRLYDRR----SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 55 ---SAGYNKAEIVKSLLE-------WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
+ + + + LL+ G+T LH+A + LL
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 105 LAHGAFIEAKANN--------------GMTPLHLSVWYSIRSEDYATVKTLLE---YNAD 147
+ +GA ++A AN G PL L+ + A VK LL+ AD
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN----QLAIVKFLLQNSWQPAD 176
Query: 148 CSAKDNEGKTPLDHLS 163
SA+D+ G T L L
Sbjct: 177 ISARDSVGNTVLHALV 192
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 2e-17
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 29/131 (22%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN---------- 98
+ PL ++A N+ IVK LL+ ++ A++ G T LH + N
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQN-SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 99 ------EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152
L E G+TPL L+ + +L+ ++
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG----KIGVLAYILQ-------RE 256
Query: 153 NEGKTPLDHLS 163
H +
Sbjct: 257 IHEPECR-HAA 266
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 4e-12
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 19/92 (20%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKV------------ELEAQNMYGETPLHMAAKNG 96
T LH + + +++ E N G TPL +AA +G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 97 CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
+L + H + +
Sbjct: 245 KIGVLAYILQREI-------HEPECRHAAAHH 269
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
T + ++L L L N TPL ++A K ++ +L+
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITN-RKGLTPLALAASSGKIGVLAYILQ------ 254
Query: 76 VELEAQNMYGETPLHMAAKNG 96
+ ++ H AA +
Sbjct: 255 -----REIHEPECRHAAAHHH 270
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 3e-22
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 56 AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115
+ ++ L+ G+ L AA+ G ++ ++L+A+GA + AK
Sbjct: 2 SSHHHHHHSSGLVP-RGSHM------GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54
Query: 116 NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175
NG TPLHL+ + VK LLE AD A+D GKT +S G+ L E+L
Sbjct: 55 KNGSTPLHLAARNG--HLE--VVKLLLEAGADVXAQDKFGKTAF-DISIDNGNEDLAEIL 109
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 3e-19
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L +A + + V+ L+ G D A++ G TPLH+AA+NG E KLLL G
Sbjct: 25 GKKLLEAARAGQDDEVRILMAN-GADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 109 AFIEAKANNGMTPLHLSVWY 128
A + A+ G T +S+
Sbjct: 81 ADVXAQDKFGKTAFDISIDN 100
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-12
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 151
+ + + + L+ G+ + + L + +D V+ L+ AD +AK
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAG--QDD--EVRILMANGADVAAK 53
Query: 152 DNEGKTPL 159
D G TPL
Sbjct: 54 DKNGSTPL 61
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 1e-20
Identities = 47/229 (20%), Positives = 72/229 (31%), Gaps = 52/229 (22%)
Query: 3 KNQDRRSRSAKPATIHGCAQSGD---LLAFQRLLRENPSLLNE---RNPVMAQTPLHVSA 56
K +R + G L L + L + R P +T L +
Sbjct: 2 KVFNRP-------ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL 54
Query: 57 ---GYNKAEIVKSLLEWPGNDKVELEAQNM-------YGETPLHMAAKNGCNEAAKLLLA 106
+ + + LL+ E N G+T LH+A + C +LL+
Sbjct: 55 LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE 114
Query: 107 HGAFIEAKANN--------------GMTPLHLSVWYSIRSEDYATVKTLLE---YNADCS 149
GA + A+A G PL L+ + V L E AD
Sbjct: 115 KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA----CTNQPHIVHYLTENGHKQADLR 170
Query: 150 AKDNEGKTPL--------DHLSNGPGSAKLRELLLWHSEEQRKRRALEA 190
+D+ G T L + N K+ +LLL + LEA
Sbjct: 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 3e-16
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 25/129 (19%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN---------E 99
+ PL ++A N+ IV L E G+ + +L Q+ G T LH N +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTE-NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199
Query: 100 AAKLLLAHGAFIEAKA-------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152
LLL A + N+G++PL ++ + + ++ D
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG-KIG---IFQHIIRRE----IAD 251
Query: 153 NEGKTPLDH 161
H
Sbjct: 252 AAAHHHHHH 260
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 2e-19
Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 10/206 (4%)
Query: 30 QRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-EAQNMYGETP 88
L + S N Q HVS E+ + N ++ L + +G TP
Sbjct: 79 PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP----NTQLNLNIPVDEHGNTP 134
Query: 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148
LH E K L+ HG+ N G + L +V + D T + LL+Y C
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV-NNYDSGTFEALLDYLYPC 193
Query: 149 -SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE---EQRKRRALEACSETKAKMDELENE 204
+D+ +T L H+ G ++ + ++ + + N+
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253
Query: 205 LSNIVGLHELKIQLRKWAKGMLLDER 230
+ L+ KW +L+ +
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQ 279
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 2e-15
Identities = 16/78 (20%), Positives = 30/78 (38%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ + + + L+ L AQ+ G+T L++AA+ G LL +G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306
Query: 109 AFIEAKANNGMTPLHLSV 126
A +G+ P+
Sbjct: 307 ADPFIANKSGLRPVDFGA 324
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 5e-14
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 17/150 (11%)
Query: 23 SGDLLAFQRLLRENPSLLNERNPVMAQTPLH------------VSAGYNKAEIVKSLLEW 70
+ D F+ LL L + M +T LH +A Y ++ +++
Sbjct: 177 NYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235
Query: 71 PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130
+ + K+ E L + A+ +NG T L+ +
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN----IAA 291
Query: 131 RSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
R + + V LL+Y AD + G P+D
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPVD 321
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 1e-12
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 19/145 (13%)
Query: 49 QTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA----KNGCNEAA 101
++ L + + ++LL++ L ++ T LH GC+ AA
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPC---LILEDSMNRTILHHIIITSGMTGCSAAA 221
Query: 102 K--------LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153
K ++ N + + +A+D+
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281
Query: 154 EGKTPLDHLSNGPGSAKLRELLLWH 178
G T L +++ G+ + + LL +
Sbjct: 282 NGDTCL-NIAARLGNISIVDALLDY 305
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 3e-12
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 85 GETPLHMAAKNG---CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141
ET LH+A ++ L+ + ++ + G T LH Y +++ +K L
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH----YCCLTDNAECLKLL 224
Query: 142 LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
L A + G+TPLD ++ ELL
Sbjct: 225 LRGKASIEIANESGETPLD-IAKRLKHEHCEELLT 258
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 6e-11
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQ----TPLHVSAGYNKA 61
+AK ++ ++ D+ + + L + T LH++
Sbjct: 123 KHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR 182
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
+ ++++ + L+ Q G T LH E KLLL A IE +G TP
Sbjct: 183 TSL-HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241
Query: 122 LHLSV 126
L ++
Sbjct: 242 LDIAK 246
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 19/128 (14%)
Query: 4 NQDRRSRSAKPATIHGCAQSGDLLAFQ--RLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
N +A +H +S D + L +N L+++ T LH + A
Sbjct: 164 NGHEPDETA----LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALHYCCLTDNA 218
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
E +K LL K +E N GETPL +A + +LL +A +G
Sbjct: 219 ECLKLLLRG----KASIEIANESGETPLDIAKRLKHEHCEELLT--------QALSGRFN 266
Query: 122 LHLSVWYS 129
H+ V Y
Sbjct: 267 SHVHVEYE 274
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 5e-12
Identities = 11/108 (10%), Positives = 25/108 (23%), Gaps = 7/108 (6%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
++A ++ L E + +AA+NG L
Sbjct: 130 QAFRLAAENGHLHVLNRLCEL-APT-EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187
Query: 110 FIEAKA--NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155
W ++ + + LL+ + +
Sbjct: 188 TEATAMIQAENYYAFR---WAAVGRGHHNVINFLLDCPVMLAYAEIHE 232
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-11
Identities = 13/113 (11%), Positives = 24/113 (21%), Gaps = 12/113 (10%)
Query: 59 NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA--KAN 116
+ + + LL ++ +AA+NG L
Sbjct: 106 SALDTLCLLLT----SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161
Query: 117 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--NEGKTPLDHLSNGPG 167
L+ + L E + E + G G
Sbjct: 162 ENYHAFRLAAEN----GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 7e-08
Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 1/81 (1%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
++A ++ L E + Q A G + LL
Sbjct: 165 HAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223
Query: 110 FIEAKANNGMTPLHLSVWYSI 130
+ + V I
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFI 244
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 8e-08
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 23/95 (24%)
Query: 77 ELEAQNMYGETPLHMAAKNGCN---EAAKLLLAHGAFIEAKANNGMTPL-------HLSV 126
+ + + E +AA GC+ + LLL ++ HL V
Sbjct: 84 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143
Query: 127 WYSIRSEDYATVKTLLEYNADCSAKD--NEGKTPL 159
+ L E E
Sbjct: 144 -----------LNRLCELAPTEIMAMIQAENYHAF 167
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 49 QTPLHVSAGYNKA---EIVKSLLEWPG-NDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
L N + ++ LL PG L +A + G A LL
Sbjct: 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338
Query: 105 LAHGAFIEAKANNG 118
L+ + + N
Sbjct: 339 LSIPSVLALTKANN 352
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 18/164 (10%), Positives = 41/164 (25%), Gaps = 33/164 (20%)
Query: 39 LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEW-----PGNDKVELEAQNMY--------- 84
L + ++A +H Y + + + +D +L +
Sbjct: 217 FLLDCPVMLAYAEIH-EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 275
Query: 85 --GETPLHMAAKNGCNEAAKLL--------LAHGAFIEAKANNGMTPLHLSVWYSIRSED 134
G L + + + A + L L++ +
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG----N 331
Query: 135 YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
LL + + +++ G LR + L H
Sbjct: 332 QGACALLLSIPSVLALTKANN----YYINETGGRLDLRAVALEH 371
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 7/61 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
L ++ LL P + L N ++ G + + L H
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSV--LALTKAN-----NYYINETGGRLDLRAVALEHH 372
Query: 109 A 109
Sbjct: 373 H 373
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 2e-11
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 20/161 (12%)
Query: 8 RSRSAKPATIHGCAQSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLH--VSAGYNKA 61
R + +P + + DLL+ L + LH V +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
+ + G L+A+ G T LH AA + KLLL A + G T
Sbjct: 206 LPLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262
Query: 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162
L ++ + + + LLE A+ H+
Sbjct: 263 LDIAR-----KKHHKECEELLE-----QAQAGT-FAFPLHV 292
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 4e-10
Identities = 53/438 (12%), Positives = 110/438 (25%), Gaps = 128/438 (29%)
Query: 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNE------------GKTPLDHLSNGPGSAK 170
H+ + Y K +L D + + K +DH+ +
Sbjct: 6 HMD--FETGEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 171 LRELLLWHSEEQRKR---RALEA----------------CSETKAKMDELENELSNI--- 208
L W +++ + +E + + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 209 --------VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKT--- 257
V + ++LR+ L E R A + + G G+GKT
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQA-----LLELRPAKNVLI------D----GVLGSGKTWVA 167
Query: 258 -MVARILGRLLYMV-GIL---------PTDRVTEVQ----RTDLVGEFVGHTGPKTRRRI 302
V M I P + +Q + D + RI
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 303 KEAEGGI--LFVDEAYR--LIPMQKADD-KDYGIEALEEIMSVMDGG-KVVVIFAGYSEP 356
+ + L + Y L+ + + ++ + + + K+++ + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVL---LNVQN------AKAWNAFNLSCKILLT-TRFKQV 277
Query: 357 MKRVIASNEGFCRRVTKFFHFNDFNSEEL-AKILHIKMNNQTEDSL----LYGFKLHSSC 411
+ A+ + L K L + L L
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREVLTTNPRR--L 330
Query: 412 SMDAIAALIEKETTEKQR-REMNGGLVDPMLVNARENLD--LRLSFDCLDTDELR----- 463
S+ IA I + +N + L + S + L+ E R
Sbjct: 331 SI--IAESIRDGLATWDNWKHVN-----------CDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 464 -TITLEDLEAGLKLLLRL 480
++ LL +
Sbjct: 378 LSVFPPSAHIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 54/397 (13%), Positives = 106/397 (26%), Gaps = 155/397 (39%)
Query: 53 HVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 112
H S E+ LL++ +L P E
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDL---------PR----------------------E 321
Query: 113 AKANNGMTPLHLS-VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171
N P LS + SIR + AT N D ++ L+ L A+
Sbjct: 322 VLTTN---PRRLSIIAESIR-DGLATWDNWKHVNCD--KLTTIIESSLNVLE----PAEY 371
Query: 172 REL-------------------LLWHSEEQRKRRALEACSETKAKMDELENEL------- 205
R++ L+W + + +++L
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKS---------DVMVVVNKLHKYSLVEKQPK 422
Query: 206 SNIVGLHELKIQLRKWAKGM------LLDERRKALGLKVGARRPPHM-----AFLGNPGT 254
+ + + + ++L+ + ++D PP++ + +G
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---- 478
Query: 255 GKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 313
+ + I +R+T + +F+D
Sbjct: 479 -------------HHLKNIEHPERMTLFRM--------------------------VFLD 499
Query: 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEG-FCRRVT 372
+R + QK A S+++ + Y K I N+ + R V
Sbjct: 500 --FRFLE-QKIRHDST---AWNASGSILN---TLQQLKFY----KPYICDNDPKYERLVN 546
Query: 373 KFFHF------NDFNSEELAKILHIKMNNQTEDSLLY 403
F N S+ +L I + ED ++
Sbjct: 547 AILDFLPKIEENLICSKYT-DLLRIALMA--EDEAIF 580
|
| >3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 22 QSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLH--VSAGYNKAEIVKSLLEWPGNDK 75
+ DLL+ L + LH V + + + G
Sbjct: 141 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH- 199
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126
L+A+ G T LH AA + KLLL A + G T L ++
Sbjct: 200 --LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 4e-07
Identities = 31/163 (19%), Positives = 44/163 (26%), Gaps = 10/163 (6%)
Query: 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA 61
++D S L L + TPL + N
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 62 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121
L G + + + G PLH A G A L L GA + A+ + G P
Sbjct: 249 LAC-EFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304
Query: 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164
L + A + TLL A + D
Sbjct: 305 LTI-----AMETANADIVTLLR-LAKMREAEAAQGQAGDETYL 341
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 39/221 (17%)
Query: 205 LSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL 263
L + G ++L+ W + K G+ G PG GKT A ++
Sbjct: 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97
Query: 264 GRLL-YMV---------GI-LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFV 312
+ L Y + L V V + H K ++ +
Sbjct: 98 AQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHF---VIIM 154
Query: 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG--YSEPMKRVIASNEGFCRR 370
DE M D + ++ +I + P R
Sbjct: 155 DEV---DGMSGGD-----RGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDR------- 199
Query: 371 VTKFFHFNDFNSEELAKIL-------HIKMNNQTEDSLLYG 404
V F ++ + L K++ D L+
Sbjct: 200 VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 32/251 (12%)
Query: 236 LKVGARRPPHMAFLGNPGTGKTMVARILGRLL------YMVGILPTDRVTEVQRTDLVGE 289
L+ P LG PGTGKT+ R L L V I +
Sbjct: 37 LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96
Query: 290 FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM-------QKADDKDYGIEALEEIMSVMD 342
+ P+ E ++ L A D L + +
Sbjct: 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 156
Query: 343 GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL 402
++ ++ G+++ + + + F+ + +++ IL +
Sbjct: 157 AFRIALVIVGHNDAVLNNLDPSTR-GIMGKYVIRFSPYTKDQIFDILLDR---------A 206
Query: 403 YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDE 461
S S D + + + + G +AR +D L S +
Sbjct: 207 KAGLAEGSYSEDILQMIADITGAQTPLDTNRG--------DARLAIDILYRSAYAAQQNG 258
Query: 462 LRTITLEDLEA 472
+ I ED+
Sbjct: 259 RKHIAPEDVRK 269
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 264
+I G + Q+++ + L R AL +G + P + G PGTGKT++AR +
Sbjct: 203 YDDIGGCRKQLAQIKE---MVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 265 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG---ILFVDEAYRLIPM 321
+ +++ + G + R+ +EAE I+F+DE + P
Sbjct: 260 NETGA-------FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP- 311
Query: 322 QKADDKDYGIEA--LEEIMSVMDG----GKVVVIFA 351
K + +E + +++++MDG V+V+ A
Sbjct: 312 -KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARI 262
L +VG E+ +L+ + + + PH+ F G PGTGKT A
Sbjct: 14 RTLDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIA 57
Query: 263 LGRLLY 268
L R L+
Sbjct: 58 LARDLF 63
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARI 262
L +VG E+ +L+ + + + PH+ F G PGTGKT A
Sbjct: 14 RTLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIA 57
Query: 263 LGRLLY 268
L R L+
Sbjct: 58 LARDLF 63
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGEFVGHTGPKT 298
+ LG PG K+++AR L R E T ++ G
Sbjct: 43 SVFLLGPPGIAKSLIARRLKFAFQNA------RAFEYLMTRFSTPEEVFGPLSIQALKDE 96
Query: 299 RRRIKEAEGG-----ILFVDE 314
R + G I+F+DE
Sbjct: 97 GRYERLTSGYLPEAEIVFLDE 117
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.98 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.97 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.97 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.97 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.97 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.97 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.97 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.96 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.96 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.96 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.96 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.96 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.96 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.96 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.96 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.96 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.96 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.96 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.96 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.96 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.96 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.96 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.96 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.96 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.96 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.96 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.96 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.96 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 99.95 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.95 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.95 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.95 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.95 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.95 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.95 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.95 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.95 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.95 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.95 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 99.95 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.95 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.95 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.95 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.95 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.95 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.95 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.95 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.95 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.95 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.95 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.95 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.95 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.95 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.95 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.94 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 99.94 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.94 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.94 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.94 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.94 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.94 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.94 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.94 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.94 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.94 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.94 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.94 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.94 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.94 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.94 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.94 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.94 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.93 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.93 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.93 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.93 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.93 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.93 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.93 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.93 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.93 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.93 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.93 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.93 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.93 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.92 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.92 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.92 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.92 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.92 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.92 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.92 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.92 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.92 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.91 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.91 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.91 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.91 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.91 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.91 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.91 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.91 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.91 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.9 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.9 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.9 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.9 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.9 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.9 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.9 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.9 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.89 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.89 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.89 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.89 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.89 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.89 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.89 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.88 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.87 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.87 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.87 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.87 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.87 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.86 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.86 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.86 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.86 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.86 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.85 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.85 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.85 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.85 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.85 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.85 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.84 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.83 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.83 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.83 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.83 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.82 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.82 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.82 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.81 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.8 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.8 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.8 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.79 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.77 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.76 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.76 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.75 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.75 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.75 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.75 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.75 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.74 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.73 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.72 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.72 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.72 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.72 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.71 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.71 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.71 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.7 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.7 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.7 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.69 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.69 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.68 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.68 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.67 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.65 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.65 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.65 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.64 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.64 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 99.63 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.63 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.62 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.62 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.62 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.59 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.58 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.53 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.46 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.42 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.38 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 99.32 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.96 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.91 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.87 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.84 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.78 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.77 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.76 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.69 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.68 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.66 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.57 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.46 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.43 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.33 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 98.32 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.3 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 98.28 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.24 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.1 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 98.08 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 97.85 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.85 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 97.83 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.83 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 97.79 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.76 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.75 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.72 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.64 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.54 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.5 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.46 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.44 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.44 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.35 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.35 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.34 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 97.32 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.32 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.31 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.3 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.29 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.26 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.24 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 97.23 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.2 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.19 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.18 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.17 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.15 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 97.13 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.1 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.08 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.06 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.05 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.05 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.05 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.03 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.01 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.0 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.0 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.0 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 96.98 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.97 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.95 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.93 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.92 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.91 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.89 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.88 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.87 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.87 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.87 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.86 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.85 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.83 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.82 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.81 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.81 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.81 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.8 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.8 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.78 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.77 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.77 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.75 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.75 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.75 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.74 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.73 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.73 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.73 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.73 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.73 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.72 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.71 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.7 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.7 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.7 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.69 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.69 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.68 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.65 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.65 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.65 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.63 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.63 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.59 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.59 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.57 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.57 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.54 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.54 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.52 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.48 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.48 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.46 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.44 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.43 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.39 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.38 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.38 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.37 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.37 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 96.36 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.36 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.36 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.33 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.32 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.32 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.29 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.25 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 96.25 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.25 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.24 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 96.23 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 96.22 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 96.2 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.19 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.18 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.16 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.16 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.14 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 96.13 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.11 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.08 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.06 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.02 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.01 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 95.98 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.98 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 95.96 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.96 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.96 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.93 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.9 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.89 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.84 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.83 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.83 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.82 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.79 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.79 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 95.77 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.76 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 95.76 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.74 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.74 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.68 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.64 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.64 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 95.6 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 95.6 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.56 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 95.52 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.52 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 95.52 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.51 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 95.51 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.5 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.5 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 95.5 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.49 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 95.47 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.46 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.46 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 95.45 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.43 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.42 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.41 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 95.4 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 95.4 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 95.38 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.35 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 95.33 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.32 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 95.29 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.27 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 95.25 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 95.24 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 95.21 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 95.2 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.2 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.16 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 95.15 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.13 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 95.13 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 95.11 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 95.11 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 95.1 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 95.05 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 95.04 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.04 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.03 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.01 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 95.0 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 94.99 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 94.95 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.94 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 94.84 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 94.81 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.81 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 94.8 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.78 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.77 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.75 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 94.73 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 94.72 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 94.71 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.62 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 94.61 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 94.6 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.58 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.57 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 94.54 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 94.49 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 94.48 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.47 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.44 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 94.43 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 94.42 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 94.37 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.28 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 94.27 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 94.25 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 94.23 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 94.22 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 94.22 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.18 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.14 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 94.12 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 94.08 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 94.07 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 94.07 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 94.07 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 94.0 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 93.94 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 93.9 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 93.9 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 93.89 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 93.88 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 93.88 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 93.82 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 93.81 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.76 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 93.75 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 93.74 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 93.73 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.72 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 93.72 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.68 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 93.67 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 93.67 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 93.64 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 93.6 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 93.59 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 93.57 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 93.52 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 93.51 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 93.47 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 93.44 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 93.43 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 93.39 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 93.39 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 93.38 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.38 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 93.38 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 93.35 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 93.32 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 93.3 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.27 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 93.27 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 93.24 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 93.24 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 93.24 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 93.22 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 93.2 |
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=307.86 Aligned_cols=236 Identities=19% Similarity=0.284 Sum_probs=197.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++++|+.|++. +.+|..+++.+..++..+|.++|||||||||||++|+++|++++. +|+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~---v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEV---IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceEE
Confidence 35799999999999999988 566667777777677788999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++++|..| .+|||||||+|.++++|..++ +....+++++||..||+ ..++||+|
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA 293 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA 293 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence 999999999999999999999877 459999999999999886443 33456889999999986 56778887
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..... ||+++| |||..|+||.|+.++|.+||+.++++. .+..+++.+.++..+.
T Consensus 294 TNrpd~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~l~~dvdl~~lA~~t~-------- 351 (405)
T 4b4t_J 294 TNRLDIL-----DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM---------NLTRGINLRKVAEKMN-------- 351 (405)
T ss_dssp ESCSSSS-----CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------BCCSSCCHHHHHHHCC--------
T ss_pred cCChhhC-----CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHCC--------
Confidence 6544332 999988 999999999999999999999998865 3456677777766665
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|++|++++.+|...+..+ ....|+.+||..|++++.|
T Consensus 352 -G~SGADi~~l~~eA~~~Air~---------~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 352 -GCSGADVKGVCTEAGMYALRE---------RRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhC
Confidence 456899999999998776432 2357999999999999876
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=302.01 Aligned_cols=237 Identities=20% Similarity=0.307 Sum_probs=196.7
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++++|+.|++. +.++..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~---v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-------~fi~v 247 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKES---VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-------TFLRI 247 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHH---HHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCcceecCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-------CEEEE
Confidence 35799999999999999988 455556666666667778999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|...+ +....+++++||..||+ +.++||+|
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA 327 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence 999999999999999999999876 459999999999999886432 34567888999999974 56788887
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.... + ||+++| |||..|+|+.||.++|.+||+.++++. .+..+++.+.++..+.
T Consensus 328 TNrpd~--L---DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~---------~l~~dvdl~~LA~~T~-------- 385 (437)
T 4b4t_I 328 TNKIET--L---DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM---------NLSEDVNLETLVTTKD-------- 385 (437)
T ss_dssp ESCSTT--C---CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS---------CBCSCCCHHHHHHHCC--------
T ss_pred CCChhh--c---CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCC--------
Confidence 654433 2 999998 999999999999999999999999865 3456677777776665
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..+|++|++++.+|...+..+ ....|+.+||++|++++.|.
T Consensus 386 -GfSGADI~~l~~eA~~~Air~---------~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 386 -DLSGADIQAMCTEAGLLALRE---------RRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSCBCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhCC
Confidence 456899999999998776433 23469999999999999873
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=298.46 Aligned_cols=235 Identities=20% Similarity=0.265 Sum_probs=195.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++|+|++++|+.|++. +.++..+++.+..++..++.++|||||||||||++|+++|++++. +|+.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~---V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREV---VELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhccHHHHHHHHHHH---HHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEEE
Confidence 5789999999999999987 455556666666667778999999999999999999999999987 999999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++.++|+|++++.++.+|..| .+|||||||+|.++++|..++ .....+++++||..|++ +.++||+||
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred hHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 99999999999999999999876 459999999999999886543 23456788999999985 567888886
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... + ||+++| |||..|+|+.|+.++|.+||+.++++.. +..+++.+.|+..+.
T Consensus 356 Nrpd~--L---DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~---------l~~dvdl~~LA~~T~--------- 412 (467)
T 4b4t_H 356 NRPNT--L---DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS---------VERGIRWELISRLCP--------- 412 (467)
T ss_dssp SCTTS--B---CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHHCC---------
T ss_pred CCccc--C---ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC---------CCCCCCHHHHHHHCC---------
Confidence 54433 2 999988 9999999999999999999999988653 456677777776665
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|++|++++.+|...+..+ ....|+.+||.+|++++.+
T Consensus 413 GfSGADI~~l~~eAa~~Air~---------~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 413 NSTGAELRSVCTEAGMFAIRA---------RRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhc
Confidence 456899999999988776433 2346999999999999864
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=299.71 Aligned_cols=237 Identities=20% Similarity=0.271 Sum_probs=196.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++++|+.|++. +.+|..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------~~~~v 246 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREV---IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------NFIFS 246 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChhHhCChHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEE
Confidence 35799999999999999988 555666666666677788999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|..++ +.....++++||..||+ +.++||+|
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~A 326 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA 326 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEe
Confidence 999999999999999999999876 469999999999999886443 33456788999999986 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.... + ||+++| |||..|+||.|+.++|.+||+.++++.. ...+++.+.++..+.
T Consensus 327 TNrp~~--L---DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------~~~d~dl~~lA~~t~-------- 384 (437)
T 4b4t_L 327 TNRPDT--L---DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK---------KTGEFDFEAAVKMSD-------- 384 (437)
T ss_dssp ESSTTS--S---CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC---------BCSCCCHHHHHHTCC--------
T ss_pred cCCchh--h---CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC---------CCcccCHHHHHHhCC--------
Confidence 654333 2 999977 6999999999999999999999998653 445677766666555
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..+|++|++++..|...+..+ ....|+.+||..|++++.|.
T Consensus 385 -G~sGADi~~l~~eA~~~air~---------~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 385 -GFNGADIRNCATEAGFFAIRD---------DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHHhc
Confidence 456899999999988776432 23469999999999999874
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=302.03 Aligned_cols=237 Identities=21% Similarity=0.278 Sum_probs=196.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++.+|+.|++. +.+|..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~---v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEA---IVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------TFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---THHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChHhcCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-------CEEEE
Confidence 45799999999999999987 556666666666677778999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|...+ +....+++++||..||+ ..++||+|
T Consensus 247 ~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaa 326 (434)
T 4b4t_M 247 AAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA 326 (434)
T ss_dssp EGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEE
T ss_pred ehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999999999999876 469999999999999886433 23456788999999986 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.... + ||++++ |||..|+||.|+.++|.+||+.++++.. +..+++.+.++..+.
T Consensus 327 TNrp~~--L---D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------~~~dvdl~~lA~~t~-------- 384 (434)
T 4b4t_M 327 TNRVDV--L---DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT---------TDDDINWQELARSTD-------- 384 (434)
T ss_dssp CSSCCC--C---CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC---------BCSCCCHHHHHHHCS--------
T ss_pred CCCchh--c---CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC---------CCCcCCHHHHHHhCC--------
Confidence 654333 2 999977 9999999999999999999999998653 456677777766665
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..+|++|++++.+|...+..+ ....|+.+||.+|+++++|.
T Consensus 385 -G~sGADi~~l~~eA~~~a~r~---------~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 385 -EFNGAQLKAVTVEAGMIALRN---------GQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHSCSSS
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhCC
Confidence 456899999999988776433 23469999999999998774
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=291.77 Aligned_cols=235 Identities=20% Similarity=0.287 Sum_probs=193.5
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+|+.|++. +.++..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~v 237 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREA---VELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIRV 237 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhccHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEE
Confidence 35789999999999999987 455556666666667778999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++++|..| .+|||||||+|.++++|... ++....+++++||..||+ ..++||+|
T Consensus 238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~a 317 (428)
T 4b4t_K 238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMA 317 (428)
T ss_dssp EGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEE
T ss_pred ecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence 999999999999999999999876 45999999999999988533 344567899999999985 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCC-CCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFN-DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~-~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|+.... + ||+++| |||..|+|| .|+.++|..||+.++++.. +..+++.+.++..+.
T Consensus 318 TN~~~~--L---D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~---------l~~~~dl~~lA~~t~------- 376 (428)
T 4b4t_K 318 TNRADT--L---DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS---------LAPEADLDSLIIRND------- 376 (428)
T ss_dssp ESCSSS--C---CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC---------BCTTCCHHHHHHHTT-------
T ss_pred cCChhh--c---ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC---------CCcccCHHHHHHHCC-------
Confidence 654332 2 899987 999999997 7999999999999998653 456677777766665
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..+|++|++++.+|...+..+ ....|+.+||++|+.++.
T Consensus 377 --G~sgadi~~l~~eA~~~a~r~---------~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 377 --SLSGAVIAAIMQEAGLRAVRK---------NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHHHHHHC---------CCCCCCHHHHHHHHHHhh
Confidence 456899999999998776433 234699999999998754
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=246.82 Aligned_cols=159 Identities=32% Similarity=0.480 Sum_probs=144.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
++|+.||+.|+.+.|+.||+ .+.++|..+.. |+||||+|+..++.+++++|++ .+++++.+|..|+||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~~-g~t~l~~a~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNASDSD-GRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHHH
Confidence 57999999999999999995 57889999987 9999999999999999999999 688999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHH
Q 011578 95 NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLREL 174 (482)
Q Consensus 95 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~l 174 (482)
.|+.+++++|+++|+++|.+|.+|+||||+|+ ..|+.+++++|+++|+|++.+|.+|+||||+ |...++.+++++
T Consensus 80 ~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~-A~~~g~~~iv~~ 154 (169)
T 4gpm_A 80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAA----ENGHKEVVKLLISKGADVNTSDSDGRTPLDL-AREHGNEEVVKL 154 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHcCCHHHHHH
Confidence 99999999999999999999999999999999 8899999999999999999999999999955 455678899999
Q ss_pred HHhhhHHHHH
Q 011578 175 LLWHSEEQRK 184 (482)
Q Consensus 175 L~~~~~~~~~ 184 (482)
|+++|++...
T Consensus 155 Ll~~GA~ie~ 164 (169)
T 4gpm_A 155 LEKQGGWLEH 164 (169)
T ss_dssp HHTC------
T ss_pred HHHCCCCcCC
Confidence 9999998653
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=305.37 Aligned_cols=245 Identities=17% Similarity=0.256 Sum_probs=166.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++++|+.|.+. +.++..+++.+...+..++.++|||||||||||++|+++|++++. +|+.++
T Consensus 474 v~w~diggl~~~k~~l~e~---v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQEL---VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTT---TTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECC
T ss_pred CCHHHhCCHHHHHHHHHHH---HHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEec
Confidence 3578899999999999987 566777777777888889999999999999999999999999876 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+++.++|+|+++++++++|+.|+ +|||||||||.+.++|+.. ++....+++++||.+||+ ..++||+||
T Consensus 544 ~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT 623 (806)
T 3cf2_A 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp HHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred cchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence 999999999999999999998874 5999999999999988633 345567999999999986 457777776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... + ||+++| |||..|+||.|+.++|.+||+.++++. .+..+++.+.|++.+.+++
T Consensus 624 N~p~~--l---D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---------~~~~~~dl~~la~~t~g~S------ 683 (806)
T 3cf2_A 624 NRPDI--I---DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVAKDVDLEFLAKMTNGFS------ 683 (806)
T ss_dssp CCSSS--S---CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CCC--------------------
T ss_pred CCchh--C---CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHhCCCCC------
Confidence 54433 2 999988 999999999999999999999988764 3456777788888887665
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCC----------------CChhhhhcccHHHHHHHHHHHHhc
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDC----------------LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~----------------~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
|++|.+++.+|...+..+..... ...+....|+.+||++|+++++|+
T Consensus 684 ---Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS 746 (806)
T 3cf2_A 684 ---GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp -----CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence 78889999988877766532110 111224479999999999999985
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-33 Score=293.48 Aligned_cols=246 Identities=20% Similarity=0.299 Sum_probs=206.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|++|+|++.+++.|++. +.++..+++.+..++..+|.++|||||||||||++||++|++++. +|+.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~---v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHH---HHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEEE
T ss_pred CChhhhcCHHHHHHHHHHH---HHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEEE
Confidence 4689999999999999987 567778888888899999999999999999999999999998876 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.++|+|+++.+++++|+.|+ ++||||||+|.+++++++.+++...+++++|+..|++ +.++||++|+..
T Consensus 271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred hHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 999999999999999999999875 5999999999999999877788889999999999975 567888876544
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.. + +|++++ ||+..|+++.|+.++|.+||+.++++. .+..+++...++..+. ...
T Consensus 351 d~--L---D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~---------~~~~dvdl~~lA~~T~---------Gfs 407 (806)
T 3cf2_A 351 NS--I---DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETH---------GHV 407 (806)
T ss_dssp TT--S---CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS---------EECTTCCHHHHHHHCC---------SCC
T ss_pred hh--c---CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhcC---------CCC
Confidence 33 2 999998 999999999999999999999988764 3456677776666665 455
Q ss_pred cchhHHHHHHHHHHhhhhhc------CCCCChh--hhhcccHHHHHHHHHHHHhcC
Q 011578 434 GGLVDPMLVNARENLDLRLS------FDCLDTD--ELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~------~~~~~~~--~~~~i~~~d~~~al~~~~~~~ 481 (482)
+++|.+++.+|...+..|.. ......+ +...|+.+||..|++.++|..
T Consensus 408 gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 78889999988887766632 1112222 345789999999999988864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=250.21 Aligned_cols=246 Identities=17% Similarity=0.200 Sum_probs=194.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+|+.|.+. +.++..++..+... ..++.++||+||||||||++|+++|+++. ..+|+.++
T Consensus 9 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~~i~ 78 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS 78 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHH---HHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT------SCEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHH---HHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC------CCcEEEEE
Confidence 3588999999999999987 45566666665432 34668999999999999999999999872 23899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.++|+|+++..++.+|..+ .++||||||+|.+.++++....+...+++++|+..|++ ..++||++|+.
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 99999999999999999999765 45899999999999988877777788999999999974 55778877654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.++.|+.++|.+|++.++.+.. ..++...+..++.... ..++
T Consensus 159 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg 216 (322)
T 1xwi_A 159 PWV-----LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-----------NSLTEADFRELGRKTD------GYSG 216 (322)
T ss_dssp TTT-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-----------BCCCHHHHHHHHHTCT------TCCH
T ss_pred ccc-----CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 422 28999999999999999999999999999987643 2345666777766542 5678
Q ss_pred chhHHHHHHHHHHhhhhhcCC--------------------------------------CCChhh--hhcccHHHHHHHH
Q 011578 435 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTDE--LRTITLEDLEAGL 474 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~~--~~~i~~~d~~~al 474 (482)
++|.+++..|...+..++... ....+. ...|+.+||.+|+
T Consensus 217 adl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al 296 (322)
T 1xwi_A 217 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSL 296 (322)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHH
Confidence 999999999988776654210 000111 2379999999999
Q ss_pred HHHHhc
Q 011578 475 KLLLRL 480 (482)
Q Consensus 475 ~~~~~~ 480 (482)
++++|.
T Consensus 297 ~~~~ps 302 (322)
T 1xwi_A 297 SNTKPT 302 (322)
T ss_dssp HTCCCS
T ss_pred HhCCCC
Confidence 999885
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=227.98 Aligned_cols=161 Identities=30% Similarity=0.469 Sum_probs=147.2
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.++.+.|+||.|+..|+.+.++.|+...+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 78 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR-QSTPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVP 78 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccC-CCCHHHHHHHcChHHHHHHHHh----cCCCCCccCCCCCCH
Confidence 35678999999999999999999998788888887776 9999999999999999999999 578899999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+ |.. ++
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-a~~-~~ 152 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA----AKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKD-GD 152 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG-SCT-TC
T ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCCCCCChhHh-Hhc-CC
Confidence 99999999999999999999999999999999999999 8899999999999999999999999999955 554 67
Q ss_pred hHHHHHHHhhhH
Q 011578 169 AKLRELLLWHSE 180 (482)
Q Consensus 169 ~~~~~lL~~~~~ 180 (482)
.+++++|...|+
T Consensus 153 ~~i~~~L~~~gA 164 (165)
T 3twr_A 153 TDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHHTC--
T ss_pred hHHHHHHhhccc
Confidence 799999998875
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=245.97 Aligned_cols=262 Identities=37% Similarity=0.558 Sum_probs=213.0
Q ss_pred HHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 198 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 198 ~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
..+....++ +++|++.+++.+.+++.....+..+...+.... .+..+++|+||||||||++|+++|+.+...+.....
T Consensus 22 ~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~ 100 (309)
T 3syl_A 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG 100 (309)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC
Confidence 344555666 799999999999999887777777777776543 356689999999999999999999999988877788
Q ss_pred CeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCc
Q 011578 277 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS 354 (482)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~ 354 (482)
+++.++++++.+.++|++...+..+|+.+.++||||||+|.+.+.++. +.....+++.|++.|+. ..+++|+++++
T Consensus 101 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 101 HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 999999999999999999999999999999999999999999876542 33446788899999986 46788888888
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH-hhccccC
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMN 433 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 433 (482)
..+..+...+|+|++||+..++|++|+.+++.+|++.++.+.. ..++++++..+....... ....++|
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~gn 247 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----------YQMTPEAETALRAYIGLRRNQPHFAN 247 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHHHHHHHTTSSSCCH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHhccCCCCCc
Confidence 7777666678999999999999999999999999999998643 356777777777653211 1123789
Q ss_pred cchhHHHHHHHHHHhhhhhcC---CCCChhhhhcccHHHHHHH
Q 011578 434 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAG 473 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~a 473 (482)
+|.++++++.|...+..|+.. +..+.++...++.+||..+
T Consensus 248 ~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 248 ARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRAS 290 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHHHhccc
Confidence 999999999999998888764 3455677888999998753
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=230.84 Aligned_cols=164 Identities=27% Similarity=0.348 Sum_probs=149.9
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
+.||||.||..|+.+.++.++..++..++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWASAFGEIETVRFLLE----WGADPHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCchhhcccCCCHHHHH
Confidence 5689999999999999999998877778888876 9999999999999999999999 5788999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+ |...++.+++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-A~~~~~~~~~ 151 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV----RGNHVKCVEALLARGADLTTEADSGYTPMDL-AVALGYRKVQ 151 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHhCcHHHH
Confidence 9999999999999999999999999999999999 8899999999999999999999999999955 5556788999
Q ss_pred HHHHhhhHHHHHHh
Q 011578 173 ELLLWHSEEQRKRR 186 (482)
Q Consensus 173 ~lL~~~~~~~~~~~ 186 (482)
++|++++++...+.
T Consensus 152 ~~L~~~~~~~~~~~ 165 (172)
T 3v30_A 152 QVIENHILKLFQSN 165 (172)
T ss_dssp HHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHhccc
Confidence 99999998765444
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=249.48 Aligned_cols=245 Identities=16% Similarity=0.192 Sum_probs=188.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.|.+. +.++..++..... ...++.++||+||||||||++|+++|++++. +|+.++
T Consensus 15 ~~~~di~G~~~~~~~l~~~---i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~v~ 83 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHH---THHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhcChHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEc
Confidence 3588999999999999987 4455565555544 3456789999999999999999999999865 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.++|+|+++..++.+|..+. ++||||||+|.+.++++....+...+++++|+..|++ ..++||++|+.
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred hHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 999999999999999999998754 4899999999999988765666677888999988863 55777777654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.|+.|+.++|.+|++.++.+.. ..++...+..++.... ..++
T Consensus 164 ~~~-----ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~l~~la~~t~------g~sg 221 (322)
T 3eie_A 164 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------CVLTKEDYRTLGAMTE------GYSG 221 (322)
T ss_dssp GGG-----SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-----------CCCCHHHHHHHHHTTT------TCCH
T ss_pred hhh-----CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 332 28999999999999999999999999999987643 2345667777776543 5688
Q ss_pred chhHHHHHHHHHHhhhhhcCC----CC------------------------------ChhhhhcccHHHHHHHHHHHHhc
Q 011578 435 GLVDPMLVNARENLDLRLSFD----CL------------------------------DTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~----~~------------------------------~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
++|++++..|...+..+.... .. +......||.+||.+|++.++|.
T Consensus 222 ~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 301 (322)
T 3eie_A 222 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 301 (322)
T ss_dssp HHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCC
Confidence 999999998877666554210 00 00012469999999999999885
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=224.90 Aligned_cols=160 Identities=24% Similarity=0.334 Sum_probs=147.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
.|.||||.||..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEE-GFTPLMWAAAHGQIAVVEFLLQ----NGADPQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCC-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcCCCCCcHHHH
Confidence 578999999999999999999976 5668888886 9999999999999999999999 578899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHH
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~ 171 (482)
|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||+|+| ...++.++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~ 150 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV----HGNHVKCVKMLLESGADPTIETDSGYNSMDLA-VALGYRSV 150 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTCHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCcHHH
Confidence 99999999999999999999999999999999999 88999999999999999999999999999554 55678889
Q ss_pred HHHHHhhhHHH
Q 011578 172 RELLLWHSEEQ 182 (482)
Q Consensus 172 ~~lL~~~~~~~ 182 (482)
+++|.+++++.
T Consensus 151 ~~~L~~~~~~~ 161 (167)
T 3v31_A 151 QQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=248.05 Aligned_cols=245 Identities=16% Similarity=0.207 Sum_probs=187.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.|.+. +.++...+..+.. ...++.++||+||||||||++|+++|+.++. +|+.++
T Consensus 48 ~~~~di~G~~~~~~~l~~~---v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~ 116 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 116 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHH---THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEee
Confidence 4688999999999999987 4445555554443 3456788999999999999999999999865 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.+.|+|+++..++.+|..+ .++||||||+|.+.+.+....++...+++++|+..|++ ..++||++|+.
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 99999999999999999999876 56999999999999887766677778889999999873 56777777654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.++.|+.++|.+|++.++.+.. ..++...+..++.... ..++
T Consensus 197 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~~~~~~l~~la~~t~------G~sg 254 (355)
T 2qp9_X 197 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------SVLTKEDYRTLGAMTE------GYSG 254 (355)
T ss_dssp GGG-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------BCCCHHHHHHHHHHTT------TCCH
T ss_pred ccc-----CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 432 28999999999999999999999999999988643 1345666777776543 5689
Q ss_pred chhHHHHHHHHHHhhhhhcCC--------------------------------CCChh--hhhcccHHHHHHHHHHHHhc
Q 011578 435 GLVDPMLVNARENLDLRLSFD--------------------------------CLDTD--ELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~--------------------------------~~~~~--~~~~i~~~d~~~al~~~~~~ 480 (482)
++|++++.+|...+..+.... ....+ ....|+.+||..|++.++|.
T Consensus 255 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps 334 (355)
T 2qp9_X 255 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 334 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCC
Confidence 999999999988877664210 00001 12469999999999999885
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-30 Score=227.51 Aligned_cols=164 Identities=23% Similarity=0.274 Sum_probs=150.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.++||.||..|+.+.|+.||...+.+++..+.. |+||||+||..|+.+++++|++ .+++++.+|..|+||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHH
Confidence 457899999999999999999999888889998886 9999999999999999999999 57889999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChH
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~ 170 (482)
+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|.||| +.|...+...
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~ 152 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC----FWGQDQVAEDLVANGALVSICNKYGEMPV-DKAKAPLREL 152 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSSBCCTTSCCGG-GGSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcchhccCCCCcH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999 88899999999999999999999999999 5555677889
Q ss_pred HHHHHHhhhHHHHH
Q 011578 171 LRELLLWHSEEQRK 184 (482)
Q Consensus 171 ~~~lL~~~~~~~~~ 184 (482)
++++|.++|++.+.
T Consensus 153 ~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 153 LRERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHHTTCCCSC
T ss_pred HHHHHHHhhcCccc
Confidence 99999999887543
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-30 Score=244.65 Aligned_cols=156 Identities=29% Similarity=0.383 Sum_probs=129.1
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++|+.||. .+.+++..+.. |.||+|+|+..++.+++++|++ .+++++.+|..|+|
T Consensus 81 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~----~g~~~n~~d~~g~T 154 (269)
T 4b93_B 81 VTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNAD-QAVPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNT 154 (269)
T ss_dssp CCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCC
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccCCC-CCCccccccccChHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 345678899999999999998888884 46667777775 8899999999999999999988 57788888888999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+||..|+.+++++|+++|+++|.+|..|+||||+|+ ..|+.++|++|+++|+|++.+|..|+||||+|+. ++
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~-~~ 229 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV----IEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ-NS 229 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT-TC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh-CC
Confidence 999999999999999999999999999999999999998 7888999999999999999999999999966543 22
Q ss_pred ChHHHHHHH
Q 011578 168 SAKLRELLL 176 (482)
Q Consensus 168 ~~~~~~lL~ 176 (482)
.++++|.
T Consensus 230 --~i~~lL~ 236 (269)
T 4b93_B 230 --KIMELLQ 236 (269)
T ss_dssp --HHHHHTT
T ss_pred --cHHHHHH
Confidence 3455543
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-30 Score=230.23 Aligned_cols=161 Identities=24% Similarity=0.282 Sum_probs=148.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 103 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLS----KGSNVNTKDFSGKT 103 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTSCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHh-cccccccccc-CccHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCc
Confidence 4577899999999999999999999966 5678888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||+|+ |...+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-A~~~~ 178 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS----KYGRSEIVKKLLELGADISARDLTGLTAEAS-ARIFG 178 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH-HHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHHhC
Confidence 999999999999999999999999999999999999999 7889999999999999999999999999955 45567
Q ss_pred ChHHHHHHHhhh
Q 011578 168 SAKLRELLLWHS 179 (482)
Q Consensus 168 ~~~~~~lL~~~~ 179 (482)
+.+++++|++++
T Consensus 179 ~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 179 RQEVIKIFTEVR 190 (192)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHhcc
Confidence 888999988765
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-30 Score=222.80 Aligned_cols=161 Identities=31% Similarity=0.376 Sum_probs=145.0
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....+.++||+||..|+.+.|+.|++. +.++|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 82 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLK----NGADVNAVDHAGMT 82 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCC
Confidence 3455678999999999999999999955 6778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||||+| ...+
T Consensus 83 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~ 157 (169)
T 2y1l_E 83 PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA----MFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS-IDNG 157 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHhC
Confidence 999999999999999999999999999999999999999 88999999999999999999999999999554 5567
Q ss_pred ChHHHHHHHhhh
Q 011578 168 SAKLRELLLWHS 179 (482)
Q Consensus 168 ~~~~~~lL~~~~ 179 (482)
+.+++++|+++|
T Consensus 158 ~~~~~~~L~~~G 169 (169)
T 2y1l_E 158 NEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHTC-
T ss_pred CHHHHHHHHHcC
Confidence 888999998765
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-30 Score=221.78 Aligned_cols=159 Identities=24% Similarity=0.312 Sum_probs=144.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
....||||.|+..|+.+.++.|++ .+.+++..+.. |+||||+|+. |+.+++++|++ .+++++.+|..|+||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGF-GRTALQVMKL-GNPEIARRLLL----RGANPDLKDRTGFAVIH 75 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTT-SCCHHHHCCS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh-CCCCccccCcc-CccHHHHHHc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 456799999999999999999995 56778888876 9999999999 99999999999 57889999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC-ccccCCCCCChhhhhhcCCCCh
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD-CSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|++ ++.+|..|+||||+ |...++.
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~-A~~~~~~ 150 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA----KEGHLRVVEFLVKHTASNVGHRNHKGDTACDL-ARLYGRN 150 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH-HHHTTCH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHH-HHHcCCH
Confidence 999999999999999999999999999999999999 88999999999999998 59999999999955 5556788
Q ss_pred HHHHHHHhhhHH
Q 011578 170 KLRELLLWHSEE 181 (482)
Q Consensus 170 ~~~~lL~~~~~~ 181 (482)
+++++|+++|++
T Consensus 151 ~~~~~Ll~~GAd 162 (162)
T 1ihb_A 151 EVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHhCCC
Confidence 999999999874
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=229.97 Aligned_cols=161 Identities=29% Similarity=0.348 Sum_probs=144.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccc-----ccCcCCCC
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGE 86 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~ 86 (482)
.|.||||+||..|+.+.|+.||...+.+++..+.. |+||||+|+..|+.+++++|+++ ++++ +.+|..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEA----APELVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHc----CchhccccccccCCCCc
Confidence 47899999999999999999998778899999886 99999999999999999999994 4554 67788999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCcccccc-------------CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-------------~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~ 153 (482)
||||+|+..|+.+++++|+++|++++..+. .|+||||+|+ ..|+.+++++|+++|++++.+|.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA----CVGSEEIVRLLIEHGADIRAQDS 152 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH----HHTCHHHHHHHHHTTCCTTCCCT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCC
Confidence 999999999999999999999999998866 7999999999 78899999999999999999999
Q ss_pred CCCChhhhhhcCCCChHHH----HHHHhhhHHH
Q 011578 154 EGKTPLDHLSNGPGSAKLR----ELLLWHSEEQ 182 (482)
Q Consensus 154 ~g~tpl~~~a~~~~~~~~~----~lL~~~~~~~ 182 (482)
.|+||||+|+. .++.+++ ++|+++|++.
T Consensus 153 ~g~t~L~~A~~-~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 153 LGNTVLHILIL-QPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TSCCHHHHHHT-CSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCHHHHHHH-cCChHHHHHHHHHHHhcCCch
Confidence 99999966555 5566655 8888888754
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=230.81 Aligned_cols=170 Identities=25% Similarity=0.264 Sum_probs=152.2
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC--CcccccCcCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND--KVELEAQNMY 84 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~ 84 (482)
...+..|.||||+||..|+.++|+.|+ +.+.+++..+.. |+||||+|+..|+.+++++|++++++. ...++..+..
T Consensus 39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (236)
T 1ikn_D 39 NFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116 (236)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence 345667999999999999999999888 557788888876 999999999999999999999965432 2336788899
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+ ..|+.+++++|+++|++++.+|..|+||| +.|
T Consensus 117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A 191 (236)
T 1ikn_D 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLT 191 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GGC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCcccCCCCCHH-HHH
Confidence 99999999999999999999999999999998 9999999999 88999999999999999999999999999 555
Q ss_pred cCCCChHHHHHHHhhhHHHH
Q 011578 164 NGPGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~ 183 (482)
...++.+++++|+++|++..
T Consensus 192 ~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 192 WGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp TTSSCHHHHHHHHTTSCGGG
T ss_pred HccCchHHHHHHHHcchhhh
Confidence 66788999999999998754
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=238.31 Aligned_cols=175 Identities=25% Similarity=0.288 Sum_probs=149.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC------------
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND------------ 74 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~------------ 74 (482)
...+..|.||||+||..|+.++|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++++..
T Consensus 39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (282)
T 1oy3_D 39 DLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116 (282)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcc
Confidence 3456788999999999999999998885 56778888876 999999999999999999999865431
Q ss_pred -------------------------------CcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC-CCcce
Q 011578 75 -------------------------------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPL 122 (482)
Q Consensus 75 -------------------------------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~tpL 122 (482)
+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++.. |+|||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL 196 (282)
T 1oy3_D 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196 (282)
T ss_dssp ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH
Confidence 2457888999999999999999999999999999999998854 99999
Q ss_pred eeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 123 h~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
|+|+ ..|+.+++++|+++|++++.+|..|+||||+ |...++.+++++|+++|++++.+...
T Consensus 197 ~~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~-A~~~~~~~~v~~Ll~~ga~~~~~~~~ 257 (282)
T 1oy3_D 197 HLAV----EAQAASVLELLLKAGADPTARMYGGRTPLGS-ALLRPNPILARLLRAHGAPEPEDGGD 257 (282)
T ss_dssp HHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHTSSCHHHHHHHHHTTCCCCCCC--
T ss_pred HHHH----HcCCHHHHHHHHHcCCCCcccccCCCCHHHH-HHHcCCcHHHHHHHHcCCCcCcCCCc
Confidence 9999 8889999999999999999999999999954 55577889999999999986655433
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=213.47 Aligned_cols=151 Identities=28% Similarity=0.397 Sum_probs=137.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
..++||.|+..|+.+.++.|++.+. +++ .+. .|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGA-PFT-TDW-LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTC-CCC-CCT-TCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCC-CCC-cCC-CCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence 4689999999999999999997754 444 344 49999999999999999999999 5788999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| ...++.+++
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A-~~~~~~~i~ 149 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT----EHNHQEVVELLIKYGADVHTQSKFCKTAFDIS-IDNGNEDLA 149 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHHH-HHcCCHHHH
Confidence 9999999999999999999999999999999999 88999999999999999999999999999555 456778888
Q ss_pred HHH
Q 011578 173 ELL 175 (482)
Q Consensus 173 ~lL 175 (482)
++|
T Consensus 150 ~~L 152 (153)
T 1awc_B 150 EIL 152 (153)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=214.49 Aligned_cols=154 Identities=29% Similarity=0.427 Sum_probs=142.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
+.|+||.||..|+.+.++.|+...+.+++..+.. |+||||+ +..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~-~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQV-MMFGSTAIALELLK----QGASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT-SCCHHHH-SCTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCC-CCcHHHH-HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHH
Confidence 4689999999999999999998866688888876 9999999 99999999999999 5788999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++ ++++.+|..|.||||+|+ ..++.+++
T Consensus 76 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~-~~~~~~~v 149 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV----QEGHTAVVSFLAAE-SDLHRRDARGLTPLELAL-QRGAQDLV 149 (156)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHH-HSCCHHHH
T ss_pred HHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH----HhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHH-HcCcHHHH
Confidence 9999999999999999999999999999999999 88899999999999 999999999999995554 56788888
Q ss_pred HHHHhh
Q 011578 173 ELLLWH 178 (482)
Q Consensus 173 ~lL~~~ 178 (482)
++|+++
T Consensus 150 ~~Ll~~ 155 (156)
T 1bd8_A 150 DILQGH 155 (156)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 888754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=235.99 Aligned_cols=252 Identities=18% Similarity=0.231 Sum_probs=175.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 201 ~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
....|++++|++++|+.|.+. +..+..++.....++...+.+++|+||||||||++++++|.++.. +++.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~---i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~ 74 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA---ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFIS 74 (274)
T ss_dssp -------CCHHHHHHHHHHHH---HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHH---HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEE
Confidence 346799999999999999986 334444444434444556678999999999999999999997754 6899
Q ss_pred eecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----cEEEEEecC
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----KVVVIFAGY 353 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~vi~~~~ 353 (482)
+++.++...++|++.+.++.+|..+ .++|+|+||+|.+.+.+.....+...+++++++..|+++ .++++++++
T Consensus 75 i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 75 VKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp EETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred EEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 9999999999999988999999876 458999999999987654322222346778899998763 345555544
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..... ||++++ |||..|+++.|+.++|.+|++.+++... ......+++.+.++..+. ...
T Consensus 155 ~p~~L-----D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~------~~~~~~~~~~~~la~~~~-------~~g 216 (274)
T 2x8a_A 155 RPDII-----DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT------KPPLDADVNLEAIAGDLR-------CDC 216 (274)
T ss_dssp CGGGS-----CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB------TTBBCTTCCHHHHHTCSG-------GGS
T ss_pred ChhhC-----CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc------CCCCccccCHHHHHHhhc-------cCC
Confidence 43332 899987 9999999999999999999999886532 123445666665554432 124
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC--CChhhhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC--LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~--~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..|++|.+++++|...+..+..... ........|+.+||++|+++++|.
T Consensus 217 ~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 217 YTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCC
Confidence 6689999999999887766543211 111233479999999999999884
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-29 Score=223.00 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=131.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
++.+.||||.||..|+.+.++.+|..++.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l 76 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE-GNTPLNIAVHNNDIEIAKALID----RGADINLQNSISDSPY 76 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence 3557788888888888888888887777677777775 8888888888888888888888 5677788888888888
Q ss_pred HHHHHcCCHHHHHHHH-hCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC-CCccccCCCCCChhhhhhcCCC
Q 011578 90 HMAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|+|+..|+.+++++|+ ..+++++..|..|+||||+|+ ..|+.+++++|+++| ++++.+|..|+||||+++..+.
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA----EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH----HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH----HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence 8888888888888888 566788888888888888888 777888888888887 7888888888888866665443
Q ss_pred ----ChHHHHHHHhhhHHHHHHh
Q 011578 168 ----SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ----~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++++.+.
T Consensus 153 ~~~~~~~~v~~Ll~~ga~~~~~~ 175 (201)
T 3hra_A 153 GNQLYQDIVKLLMENGADQSIKD 175 (201)
T ss_dssp CSHHHHHHHHHHHHTTCCTTCCC
T ss_pred chhhHHHHHHHHHHCCCCCCccC
Confidence 2677888888877765443
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=225.59 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=149.1
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+||..|+.+.++.|++. +.+++..+.. |+||||+|+..|+.+++++|+++ ...+++.++..|.||
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~ 95 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNM-GRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTP 95 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHB---TTSCTTCCCTTCCCH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCcH
Confidence 367899999999999999999999954 6778888876 99999999999999999999995 234788899999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||||+| +..++
T Consensus 96 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~ 170 (223)
T 2f8y_A 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA----AVNNVDAAVVLLKNGANKDMQNNREETPLFLA-AREGS 170 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHTC
T ss_pred HHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHH-HHcCC
Confidence 99999999999999999999999999999999999999 88899999999999999999999999999555 45678
Q ss_pred hHHHHHHHhhhHHHHHH
Q 011578 169 AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 169 ~~~~~lL~~~~~~~~~~ 185 (482)
.+++++|+++|++++.+
T Consensus 171 ~~~v~~Ll~~ga~~~~~ 187 (223)
T 2f8y_A 171 YETAKVLLDHFANRDIT 187 (223)
T ss_dssp HHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHcCCCCccc
Confidence 88999999998876644
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=242.44 Aligned_cols=244 Identities=17% Similarity=0.274 Sum_probs=184.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+++. ++..+++.+...+..++.+++|+||||||||++|+++|+.+.. +|+.+++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~~ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred CHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEEh
Confidence 57899999999999998854 3333333333344557789999999999999999999998754 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++.++|+|+++..++.+|..+. ++||||||+|.+.+.++.. ......+++++|+..|++ ..++||++|+
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 99999999999999999998764 4899999999998766432 123344777888888874 4678888866
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... .+|++++ ||+..++|+.|+.++|.+|++.++++.. +..+++.+.++..+. .
T Consensus 163 ~~~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---------~~~~~~~~~la~~~~---------g 219 (301)
T 3cf0_A 163 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------G 219 (301)
T ss_dssp CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHTCS---------S
T ss_pred Cccc-----cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---------CCccchHHHHHHHcC---------C
Confidence 5432 2888888 9999999999999999999999998653 234566666655433 4
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCC-C------------CC---hhhhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFD-C------------LD---TDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~-~------------~~---~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..|++|++++++|...+..+.... . .+ .+....|+.+||.+|+++++|.
T Consensus 220 ~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 220 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 557799999999988776553210 0 00 1123579999999999988763
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=248.42 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=183.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.|.+. +.++..++..+.. ...++.++||+||||||||++|+++|+++. ..+|+.++
T Consensus 131 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~ 200 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS 200 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHH---HTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEEC
T ss_pred CCHHHhcCHHHHHHHHHHH---HHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEe
Confidence 4688999999999999987 4445554444332 124668999999999999999999999871 23899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.+.|+|+++..++.+|..+ .++||||||||.+.++++....+...+++++|+..|++ ..++||++|+.
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999998765 45999999999999988776777788999999999975 45778877654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.++.|+.+++..|++.++.+.. ..++...+..++.... ..++
T Consensus 281 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg 338 (444)
T 2zan_A 281 PWV-----LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-----------NSLTEADFQELGRKTD------GYSG 338 (444)
T ss_dssp GGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------EECCHHHHHHHHHHTT------TCCH
T ss_pred ccc-----cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 432 38999999999999999999999999999987643 1235566777766543 5688
Q ss_pred chhHHHHHHHHHHhhhhhcCC--------------------------------------CCChh--hhhcccHHHHHHHH
Q 011578 435 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTD--ELRTITLEDLEAGL 474 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~--~~~~i~~~d~~~al 474 (482)
++|.+++..|...+..++... ....+ ....||.+||..|+
T Consensus 339 adl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~ 418 (444)
T 2zan_A 339 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSL 418 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHH
Confidence 999999999988766554210 00001 12479999999999
Q ss_pred HHHHhc
Q 011578 475 KLLLRL 480 (482)
Q Consensus 475 ~~~~~~ 480 (482)
++++|+
T Consensus 419 ~~~~ps 424 (444)
T 2zan_A 419 SSTKPT 424 (444)
T ss_dssp HTCCCS
T ss_pred HhCCCC
Confidence 999885
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=231.44 Aligned_cols=168 Identities=23% Similarity=0.270 Sum_probs=150.4
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+||..|+.++|+.|++ .+.+++..+.. |+||||+|+..|+.+++++|+++ ...+++.++..|.||
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~ 127 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNM-GRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTP 127 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHS---TTSCTTCCCTTCCCH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHc---CCCCccccCCCCCcH
Confidence 46789999999999999999999985 57778888876 99999999999999999999995 234788999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| +..++
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A-~~~~~ 202 (253)
T 1yyh_A 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA----AVNNVDAAVVLLKNGANKDMQNNREETPLFLA-AREGS 202 (253)
T ss_dssp HHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTC
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHCCC
Confidence 99999999999999999999999999999999999999 78899999999999999999999999999555 45678
Q ss_pred hHHHHHHHhhhHHHHHHh
Q 011578 169 AKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 169 ~~~~~lL~~~~~~~~~~~ 186 (482)
.+++++|+++|++.+.+.
T Consensus 203 ~~~v~~Ll~~ga~~~~~d 220 (253)
T 1yyh_A 203 YETAKVLLDHFANRDITD 220 (253)
T ss_dssp HHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHHHcCCCccccc
Confidence 889999999998766543
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=234.99 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=148.8
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+|+..|+.++++.|+..++.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t 159 (253)
T 1yyh_A 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKS 159 (253)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTT-CCCHHHHHHHHTCSSHHHHHHH----TTCCTTCBCTTSCB
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCC-CCcHHHHHHHcChHHHHHHHHH----cCCCCCCcCCCCCC
Confidence 445779999999999999999999998877788888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||+ +.|...+
T Consensus 160 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~g 234 (253)
T 1yyh_A 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPR-DIAQERM 234 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCccccccCCCCHH-HHHHHcC
Confidence 999999999999999999999999999999999999999 88899999999999999999999999999 5555678
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
+.+++.+|......
T Consensus 235 ~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 235 HHDIVRLLDLEHHH 248 (253)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHhhh
Confidence 88899888865543
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=225.63 Aligned_cols=169 Identities=28% Similarity=0.365 Sum_probs=153.4
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|++. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.
T Consensus 34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 107 (231)
T 3aji_A 34 TRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA-GWSPLHIAASAGXDEIVKALLV----KGAHVNAVNQNGC 107 (231)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred hcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHH----cCCCCCCCCCCCC
Confidence 45578899999999999999999999955 6778888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..
T Consensus 108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~ 182 (231)
T 3aji_A 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA----AKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DE 182 (231)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH----HcCCHHHHHHHHhcCCCccccCCCCCCHHHHHH-HC
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999995554 56
Q ss_pred CChHHHHHHHhhhHHHHHHh
Q 011578 167 GSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~~ 186 (482)
++.+++++|+++|++++.+.
T Consensus 183 ~~~~~v~~Ll~~ga~~~~~~ 202 (231)
T 3aji_A 183 ERVEEAKFLVTQGASIYIEN 202 (231)
T ss_dssp TCHHHHHHHHHTTCCSCCCC
T ss_pred CCHHHHHHHHHCCCCCCCCC
Confidence 78889999999998765443
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=235.13 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=146.5
Q ss_pred CCCCCchHhHHHHHc---CCHHHHHHHHhhCCCCccC-----------CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC
Q 011578 9 SRSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNE-----------RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~~~~-----------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 74 (482)
.+..|.||||+||.. |+.++|+.||..+. +++. .+. .|+||||+|+..|+.+++++|++ .
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~----~ 112 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK-DSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQCVKLLVE----N 112 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH-HTTCSSCGGGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHH----T
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCC-cccchhhhcccccccccc-cCCCHHHHHHHcCCHHHHHHHHH----c
Confidence 578899999999999 99999999996533 2321 223 49999999999999999999999 5
Q ss_pred CcccccCcCC-------------CChHHHHHHHcCCHHHHHHHHh---CCCCccccccCCCcceeeehhhccCCChHH--
Q 011578 75 KVELEAQNMY-------------GETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSEDYA-- 136 (482)
Q Consensus 75 ~~~~~~~~~~-------------g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~-- 136 (482)
|++++.+|.. |.||||+|+..|+.+++++|++ +|++++.+|.+|+||||+|+.. ..++.+
T Consensus 113 ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~--~~~~~~~~ 190 (256)
T 2etb_A 113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI--ADNSPENS 190 (256)
T ss_dssp TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH--CCSCHHHH
T ss_pred CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHc--ccCCchhh
Confidence 7888888876 9999999999999999999999 9999999999999999999932 167888
Q ss_pred -----HHHHHhhCCCCc-------cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 137 -----TVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 137 -----~v~~Ll~~gad~-------~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++++|+++|+++ +.+|..|+||||+| +..++.+++++|+++|.+.....
T Consensus 191 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A-~~~g~~~~v~~Ll~~g~~~~~~~ 251 (256)
T 2etb_A 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA-AKEGKIEIFRHILQREFSGAAAH 251 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH-HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH-HHhCCHHHHHHHHhCCCCCCCcc
Confidence 999999999999 99999999999555 45678899999999998766543
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=213.54 Aligned_cols=138 Identities=30% Similarity=0.423 Sum_probs=122.7
Q ss_pred cccc-ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.|.| ...+..|.||||+|+..|+.+.++.++. .+.+++..+.. |+||||+||..|+.++|++|++ .|+++|.+
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~~-g~TpLh~A~~~g~~~~v~~Ll~----~gadvn~~ 99 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSD-GRTPLHHAAENGHKEVVKLLIS----KGADVNAK 99 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCC
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhccC-CCCHHHHHHHcCCHHHHHHHHH----CcCCCCCC
Confidence 4444 3456789999999999999999999885 57788999886 9999999999999999999999 58899999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccc
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 150 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~ 150 (482)
|..|+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++||+++.
T Consensus 100 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~----~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 100 DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR----EHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHTC------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcCC
Confidence 999999999999999999999999999999999999999999999 88999999999999999874
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=225.18 Aligned_cols=165 Identities=29% Similarity=0.382 Sum_probs=144.9
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.+|||.||..|+.+.+++++..++..++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLH 78 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCC-CCCHHHHHHHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHH
Confidence 457889999999999999999998888777777776 9999999999999999999998 57788899999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChH
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~ 170 (482)
+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+. .++.+
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~ 153 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA----SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA-KGNLK 153 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH-cCCHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999955554 56788
Q ss_pred HHHHHHhhhHHHHHH
Q 011578 171 LRELLLWHSEEQRKR 185 (482)
Q Consensus 171 ~~~lL~~~~~~~~~~ 185 (482)
++++|+.+|++.+.+
T Consensus 154 ~v~~Ll~~g~~~~~~ 168 (231)
T 3aji_A 154 MVHILLFYKASTNIQ 168 (231)
T ss_dssp HHHHHHHTTCCSCCC
T ss_pred HHHHHHhcCCCcccc
Confidence 888888888765543
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=224.80 Aligned_cols=164 Identities=25% Similarity=0.305 Sum_probs=152.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+|+..|+.++++.|+..++.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t 127 (223)
T 2f8y_A 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKS 127 (223)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCB
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CCcHHHHHHHhCcHHHHHHHHH----cCCCCcCcCCCCCc
Confidence 455789999999999999999999998877788888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||+|+ |...+
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-A~~~~ 202 (223)
T 2f8y_A 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRDI-AQERM 202 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH----HcCCHHHHHHHHHcCCCCccccccCCCHHHH-HHHhc
Confidence 999999999999999999999999999999999999999 8889999999999999999999999999954 55577
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
+.+++++|+++|+.
T Consensus 203 ~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 203 HHDIVRLLDEYNLV 216 (223)
T ss_dssp CHHHHHHHHHTTCS
T ss_pred chHHHHHHHHcCCC
Confidence 88999999998875
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-28 Score=221.41 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=147.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|++ .+.+++..+.. |+||||+|+..|+.+++++|+++ .+.+++.+|..|.
T Consensus 33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~ 107 (201)
T 3hra_A 33 DEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNSI-SDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGG 107 (201)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSC
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhc---cCcccccccCCCC
Confidence 3456789999999999999999999995 57788888876 99999999999999999999954 5778999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCCh-----HHHHHHHhhCCCCccccCCCCCChhh
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSED-----YATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~-----~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+ ..++ .+++++|+++|++++.+|..|+||||
T Consensus 108 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 183 (201)
T 3hra_A 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV----GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183 (201)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH----HSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH----HhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHH
Confidence 9999999999999999999999 999999999999999999 5554 99999999999999999999999995
Q ss_pred hhhcCCCChHHHHHHHhhh
Q 011578 161 HLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~ 179 (482)
+ |...++.+++++|+++|
T Consensus 184 ~-A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 184 Y-ANQKGYTEISKILAQYN 201 (201)
T ss_dssp H-HHHHTCHHHHHHHHTCC
T ss_pred H-HHHcCCHhHHHHHHhcC
Confidence 5 45567888999998765
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-29 Score=219.33 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=138.0
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcH----HHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
++++||.||..|+.+.++.++..+. +..++..|+||||+|+..|+. +++++|++ .|+++|.+|..|+||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTL 78 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcH
Confidence 5689999999999999999997653 334422499999999999975 59999999 689999999999999
Q ss_pred HHHHHHcCC------HHHHHHHHhCCCCccccccCCC-cceeeehhhccC-CChHHHHHHHhh-CCCCccccCCCCCChh
Q 011578 89 LHMAAKNGC------NEAAKLLLAHGAFIEAKANNGM-TPLHLSVWYSIR-SEDYATVKTLLE-YNADCSAKDNEGKTPL 159 (482)
Q Consensus 89 Lh~A~~~g~------~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A~~~~~~-~~~~~~v~~Ll~-~gad~~~~d~~g~tpl 159 (482)
||+|+..|+ .+++++|+++|+++|.+|..|+ ||||+|+..+.. .++.+++++|++ +|+|++.+|..|+|||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 999999987 6889999999999999999999 999999932211 345679999999 9999999999999999
Q ss_pred hhhhcCCCChHHHHHHHhhhHHH
Q 011578 160 DHLSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~ 182 (482)
| .|...++.+++++|..+....
T Consensus 159 ~-~A~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 159 E-FVKRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp H-HHHTTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHcCCHHHHHHHHHHHHHH
Confidence 5 555678888999999776543
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=226.54 Aligned_cols=171 Identities=24% Similarity=0.326 Sum_probs=125.7
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+|+..|+.++++.|++ .+.+++..+.. |+||||+|+..|+.+++++|++++...+.+++..|..|.||
T Consensus 42 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~ 119 (241)
T 1k1a_A 42 YNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119 (241)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH
Confidence 34557777777777777777777664 45556666654 77777777777777777777775444444777777788888
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
||+|+..|+.+++++|+++|++++..+ ..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..+
T Consensus 120 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~ 194 (241)
T 1k1a_A 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV----ENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS-GRG 194 (241)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH-HHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HcC
Confidence 888888888888888888888888777 67888888888 777888888888888888888888888884444 456
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++++.+.
T Consensus 195 ~~~~v~~Ll~~ga~~~~~~ 213 (241)
T 1k1a_A 195 LLPLVRTLVRSGADSSLKN 213 (241)
T ss_dssp CHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHHhcCCCCCCcC
Confidence 6777778887777765443
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=224.24 Aligned_cols=170 Identities=23% Similarity=0.255 Sum_probs=147.0
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCC-CCccC-CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENP-SLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~-~~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
.+..|.||||+|+..|+.++++.|+..++ .+++. .+.. |+||||+|+..|+.+++++|++++. +++++.++..|.
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~~~~~~g~ 108 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGV 108 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTT-SCCHHHHHHHHCCHHHHHHHHSSSS--CCCTTCCCTTCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCC-CCCHHHHHHHcCCHHHHHHHHhCCC--CcccccCCcCCC
Confidence 67789999999999999999999997652 44454 5554 9999999999999999999999431 278899999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC-CCccccCCCCCChhhhhhcC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~~a~~ 165 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++| ++++.+|..|+||||+|+.
T Consensus 109 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~- 183 (228)
T 2dzn_A 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA----SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA- 183 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH-
T ss_pred CHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH-
Confidence 9999999999999999999999999999999999999999 888999999999999 9999999999999955554
Q ss_pred CCChHHHHHHH-hhhHHHHHHh
Q 011578 166 PGSAKLRELLL-WHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~-~~~~~~~~~~ 186 (482)
.++.+++++|+ ++|++.+.+.
T Consensus 184 ~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 184 EGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp TTCHHHHHHHHHHHCCCSCCBC
T ss_pred cCCHHHHHHHHHhcCCCCCccC
Confidence 56777888888 8888766544
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-29 Score=236.28 Aligned_cols=167 Identities=24% Similarity=0.278 Sum_probs=131.1
Q ss_pred CCCCCchHhHHHHHcCCHH-HHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 9 SRSAKPATIHGCAQSGDLL-AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~-~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.+..+.||||+|+..++.+ .++.|+ ..|.++|..+.. |+||||+||..|+.++|++|++ .+++++.++..|.|
T Consensus 48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~d~~-G~TpLh~A~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t 121 (269)
T 4b93_B 48 ADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVTSQD-GSSPLHVAALHGRADLIPLLLK----HGANAGARNADQAV 121 (269)
T ss_dssp ----------------------------CCCCTTCCCTT-SCCHHHHHHHTTCTTHHHHHHH----TTCCTTCCCTTCCC
T ss_pred cCccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHh----cCCCcCccCCCCCC
Confidence 4456889999999988876 455555 678889999987 9999999999999999999999 67889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..++.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|+|+|.+|..|+||||+|+ ..+
T Consensus 122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~----~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~-~~g 196 (269)
T 4b93_B 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC----SGGHHELVALLLQHGASINASNNKGNTALHEAV-IEK 196 (269)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH----HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH-HTT
T ss_pred ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH-HcC
Confidence 999999999999999999999999999999999999999 889999999999999999999999999995555 567
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++++.+.
T Consensus 197 ~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 197 HVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp CHHHHHHHHHTTCCSCCCC
T ss_pred CHHHHHHHHHCCCCCCCcC
Confidence 8899999999998876554
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=231.88 Aligned_cols=162 Identities=21% Similarity=0.252 Sum_probs=147.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHH-----hCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSA-----GYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
..+..|.||||+||..|+.++|+.||..+..+++..+.. |+||||+|+ ..++.+++++|++ .+.+++..+
T Consensus 106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~tpL~~a~~~~~~~~~~~~~v~~Ll~----~g~~~~~~~ 180 (276)
T 4hbd_A 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA-GYSPIMLTALATLKTQDDIETVLQLFR----LGNINAKAS 180 (276)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTT-SCCHHHHGGGCCCCSHHHHHHHHHHHH----HSCTTCCCT
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCC-CCCHHHHHHHHHhhhhhhHHHHHHHHH----cCCCccccC
Confidence 457789999999999999999999998777689998886 999999999 6689999999999 567788889
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDH 161 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~ 161 (482)
..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+ ..|+.+++++|++ .|+|++.+|..|+||||+
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~ 256 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC----EHGHKEIAGLLLAVPSCDISLTDRDGSTALMV 256 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----HCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999 7889999999999 899999999999999955
Q ss_pred hhcCCCChHHHHHHHhhh
Q 011578 162 LSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~ 179 (482)
|+ ..++.+++++|+++.
T Consensus 257 A~-~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 257 AL-DAGQSEIASMLYSRM 273 (276)
T ss_dssp HH-HHTCHHHHHHHHHHC
T ss_pred HH-HcCCHHHHHHHHhcc
Confidence 55 467788888887654
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=233.88 Aligned_cols=169 Identities=26% Similarity=0.304 Sum_probs=150.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCC--CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPS--LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~--~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
..+..|.||||+||..|+.++|+.||..+.. .++..+.. |+||||+||..|+.+++++|++ .|++++.+|..|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g 78 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYA----AGAGVLVAERGG 78 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTS
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCC
Confidence 4578899999999999999999999976443 37788776 9999999999999999999999 578899999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCC-----------------------------------------------ccccccCC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAF-----------------------------------------------IEAKANNG 118 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g 118 (482)
+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999999999999999999998865 77888999
Q ss_pred CcceeeehhhccCCChHHHHHHHhhCCCCccccCCC-CCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE-GKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 119 ~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~-g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+||||+|+ ..|+.+++++|+++|++++.++.. |+||||+|+ ..++.+++++|+++|++++.+.
T Consensus 159 ~t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~-~~~~~~~v~~Ll~~gad~~~~d 222 (282)
T 1oy3_D 159 HTPLHVAV----IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV-EAQAASVLELLLKAGADPTARM 222 (282)
T ss_dssp CCHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCC
T ss_pred cCHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH-HcCCHHHHHHHHHcCCCCcccc
Confidence 99999999 889999999999999999999865 999995555 4678899999999998876544
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=231.38 Aligned_cols=167 Identities=22% Similarity=0.210 Sum_probs=143.2
Q ss_pred CCCCchHhHHHH---HcCCHHHHHHHHhhCC----------CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCc
Q 011578 10 RSAKPATIHGCA---QSGDLLAFQRLLRENP----------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (482)
Q Consensus 10 ~~~~~t~l~~a~---~~g~~~~v~~ll~~~~----------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 76 (482)
+..|.||||+|+ ..|+.++|+.||..+. ...+..+.. |+||||+||..|+.++|++|++ .|+
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga 117 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR-GQTALHIAIERRCKHYVELLVE----KGA 117 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEE-SBCHHHHHHHTTCHHHHHHHHH----TTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccC-CCCHHHHHHHcCCHHHHHHHHh----CCC
Confidence 367999999999 7799999999997542 223334434 9999999999999999999999 578
Q ss_pred ccccCc--------------CCCChHHHHHHHcCCHHHHHHHHh---CCCCccccccCCCcceeeehhhccCCCh-----
Q 011578 77 ELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSED----- 134 (482)
Q Consensus 77 ~~~~~~--------------~~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~~~----- 134 (482)
+++.++ ..|+||||+|+..|+.+++++|++ +|++++.+|.+|+||||+|+. .++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~----~~~~~~~~ 193 (260)
T 3jxi_A 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA----IADNTREN 193 (260)
T ss_dssp CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH----HCCSSHHH
T ss_pred CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHH----hccCchhH
Confidence 888888 689999999999999999999999 999999999999999999994 334
Q ss_pred ----HHHHHHHhhCCCCc-------cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 135 ----YATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 135 ----~~~v~~Ll~~gad~-------~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.+++++|+++|+++ +.+|..|+||||+| +..++.+++++|+++|.+.....
T Consensus 194 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A-~~~g~~~~v~~Ll~~g~~~~~~~ 255 (260)
T 3jxi_A 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA-AKTGKIGIFQHIIRREIADAAAH 255 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH-HHTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHH-HHcCCHHHHHHHHHhCCCccccc
Confidence 69999999999999 78999999999555 55678899999999988766543
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=230.09 Aligned_cols=169 Identities=24% Similarity=0.275 Sum_probs=141.6
Q ss_pred cCCCCCchHhHHHHHc---CCHHHHHHHHhhCCCC------ccC----CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC
Q 011578 8 RSRSAKPATIHGCAQS---GDLLAFQRLLRENPSL------LNE----RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~------~~~----~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 74 (482)
..+..|.||||+||.. |+.++|+.||..+... +|. .+.. |+||||+|+..|+.++|++|++ .
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~----~ 123 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVE----N 123 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHH----T
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHH----C
Confidence 3467899999999987 9999999999764211 222 3334 9999999999999999999999 5
Q ss_pred CcccccCcC--------------CCChHHHHHHHcCCHHHHHHHHh---CCCCccccccCCCcceeeehhhccCCCh---
Q 011578 75 KVELEAQNM--------------YGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSED--- 134 (482)
Q Consensus 75 ~~~~~~~~~--------------~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~~~--- 134 (482)
|++++.++. .|.||||+|+..|+.+++++|++ +|++++.+|.+|+||||+|+ ..++
T Consensus 124 ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~----~~~~~~~ 199 (273)
T 2pnn_A 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV----EVADNTV 199 (273)
T ss_dssp TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH----HHCCSCH
T ss_pred CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHH----HccCcch
Confidence 788888886 79999999999999999999999 99999999999999999999 5455
Q ss_pred ------HHHHHHHhhCCCCcc-------ccCCCCCChhhhhhcCCCChHHHHHHHhhhH-HHHHHh
Q 011578 135 ------YATVKTLLEYNADCS-------AKDNEGKTPLDHLSNGPGSAKLRELLLWHSE-EQRKRR 186 (482)
Q Consensus 135 ------~~~v~~Ll~~gad~~-------~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~-~~~~~~ 186 (482)
.+++++|+++|++++ .+|..|+||||+| +..++.+++++|+++|+ ++....
T Consensus 200 ~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A-~~~g~~~iv~~Ll~~ga~dp~~~~ 264 (273)
T 2pnn_A 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA-ASSGKIGVLAYILQREIHEPECRH 264 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH-HHTTCHHHHHHHHHHHTC------
T ss_pred hHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH-HHhChHHHHHHHHHCCCCCchhhh
Confidence 789999999999997 5899999999555 55678899999999998 555443
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=228.80 Aligned_cols=161 Identities=23% Similarity=0.267 Sum_probs=140.3
Q ss_pred CchHhHHHHHcCCHHHHHHHHh---hCCCCccC----CCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccc---
Q 011578 13 KPATIHGCAQSGDLLAFQRLLR---ENPSLLNE----RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELE--- 79 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~----~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~--- 79 (482)
|.||||.||..|+.+.|+.+++ ..+.+++. .+.. |+||||+|+.. |+.+++++|+++ +++++
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~-g~t~L~~A~~~~~~g~~~~v~~Ll~~----g~~~~~~~ 76 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGST-GKTCLMKAVLNLQDGVNACIMPLLQI----DKDSGNPK 76 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTT-TBCHHHHHHHTCBTTBCTTHHHHHHH----HHHTTCSS
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCC-CCCHHHHHHHccccchHHHHHHHHhc----CCcccchh
Confidence 7899999999999985544433 45777887 6665 99999999999 999999999994 45444
Q ss_pred --------cCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC-------------CCcceeeehhhccCCChHHHH
Q 011578 80 --------AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-------------GMTPLHLSVWYSIRSEDYATV 138 (482)
Q Consensus 80 --------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~tpLh~A~~~~~~~~~~~~v 138 (482)
.+|..|+||||+|+..|+.+++++|+++|++++.+|.. |+||||+|+ ..|+.+++
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~~~~~~v 152 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA----CTKQWDVV 152 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH----HTTCHHHH
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH----HcCCHHHH
Confidence 23478999999999999999999999999999999886 999999999 88999999
Q ss_pred HHHhh---CCCCccccCCCCCChhhhhhc-CCCChH-------HHHHHHhhhHHH
Q 011578 139 KTLLE---YNADCSAKDNEGKTPLDHLSN-GPGSAK-------LRELLLWHSEEQ 182 (482)
Q Consensus 139 ~~Ll~---~gad~~~~d~~g~tpl~~~a~-~~~~~~-------~~~lL~~~~~~~ 182 (482)
++|++ +|++++.+|..|+||||+|+. ..++.+ ++++|+++|++.
T Consensus 153 ~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 99999 999999999999999977775 256666 999999999987
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=233.31 Aligned_cols=167 Identities=26% Similarity=0.305 Sum_probs=145.9
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
...+.||||.||..|+.+.|+.||.. +.++|..+.. |+||||+||..|+.+++++|++ .|++++.+|..|+|||
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL 110 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVD-GLTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIPL 110 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHH
Confidence 34678999999999999999999965 5678888876 9999999999999999999999 5788999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCC--------------------------------------------------
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGM-------------------------------------------------- 119 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-------------------------------------------------- 119 (482)
|+|+..|+.+++++|+++|++++..|..|.
T Consensus 111 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (299)
T 1s70_B 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190 (299)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence 999999999999999999999988776555
Q ss_pred ----------cceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhh
Q 011578 120 ----------TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 120 ----------tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| +..++.+++++|+++|++++.+..
T Consensus 191 ~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A-~~~~~~~~v~~Ll~~gad~~~~d~ 263 (299)
T 1s70_B 191 NDVRHAKSGGTALHVAA----AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA-AHWGKEEACRILVENLCDMEAVNK 263 (299)
T ss_dssp CCCCCTTTCCCHHHHHH----HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred chhhhcCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH-HhcCCHHHHHHHHHcCCCCCCcCC
Confidence 5555555 56789999999999999999999999999555 456788899999999988765543
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=219.17 Aligned_cols=168 Identities=22% Similarity=0.267 Sum_probs=151.2
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||.|+..|+.++++.|+. .+.+++..+.. |.||||+|+..|+.+++++|+++ ...+++..+..|.|
T Consensus 39 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t 113 (237)
T 3b7b_A 39 TCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSN---GQMDVNCQDDGGWT 113 (237)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTT-SCCHHHHHHHTTCHHHHHHHHTT---TCCCTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhC---CCCCcccCCCCCCC
Confidence 345679999999999999999999884 56778888876 99999999999999999999995 23788999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..|+.+++++|+++|++++.+|..|.||||+|+ ..+
T Consensus 114 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~ 188 (237)
T 3b7b_A 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA----FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA-REN 188 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH-HTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HhC
Confidence 999999999999999999999999999999999999999 788999999999999999999999999995554 567
Q ss_pred ChHHHHHHHhhhHHHHHH
Q 011578 168 SAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~ 185 (482)
+.+++++|+++|++.+.+
T Consensus 189 ~~~~v~~Ll~~gad~~~~ 206 (237)
T 3b7b_A 189 RYDCVVLFLSRDSDVTLK 206 (237)
T ss_dssp CHHHHHHHHTTTCCTTCC
T ss_pred CHhHHHHHHHcCCCCCcc
Confidence 888999999999876544
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-28 Score=221.36 Aligned_cols=167 Identities=25% Similarity=0.342 Sum_probs=151.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.+.++.|++. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.++..|.|
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 79 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSED-QRTPLMEAAENNHLEAVKYLIK----AGALVDPKDAEGST 79 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCCCCCCTTSCC
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCC-CCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCc
Confidence 4567899999999999999999999854 6778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
|||+|+..|+.+++++|+++| ++++..+..|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+ ..
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~ 154 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT----EYKHVDLVKLLLSKGSDINIRDNEENICLHWAA-FS 154 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH-HC
Confidence 999999999999999999999 899999999999999999 888999999999999999999999999995555 46
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
++.+++++|+++|++.+..
T Consensus 155 ~~~~~~~~Ll~~g~~~~~~ 173 (237)
T 3b7b_A 155 GCVDIAEILLAAKCDLHAV 173 (237)
T ss_dssp CCHHHHHHHHTTTCCTTCC
T ss_pred CCHHHHHHHHHcCCCCCCc
Confidence 7888999999998876543
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-28 Score=224.92 Aligned_cols=165 Identities=19% Similarity=0.167 Sum_probs=120.5
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
...|.||||.|+..|+.+.++.+|. .+.+++.. . .|.||||+|+..|+.++|++|++ .+++++.+|..|+|||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~-~-~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L 74 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN-P-LPLALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITAL 74 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHH
T ss_pred CccccccCchhhhhhhHHHHHHHhc-cCCCcccC-c-hhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHH
Confidence 3579999999999999999999885 46667754 3 39999999999999999999999 5778999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC-Chhhhhh-cCCC
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLS-NGPG 167 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~-tpl~~~a-~~~~ 167 (482)
|+||..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.++..|. ||||++. ...+
T Consensus 75 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 75 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA----SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhc
Confidence 9999999999999999999999999999999999999 88999999999999999999998887 9996552 5678
Q ss_pred ChHHHHHHHhhhHHHHHH
Q 011578 168 SAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~ 185 (482)
+.+++++|+.++++....
T Consensus 151 ~~~~~~~Ll~~~a~~~~~ 168 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMGIM 168 (239)
T ss_dssp CCCHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHhhhccccc
Confidence 889999999998876543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=229.31 Aligned_cols=245 Identities=17% Similarity=0.248 Sum_probs=185.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+.+.+. .+..++..+.... .++.++||+||||||||++|+++|+.++. +|+.++
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~ 149 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSIS 149 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEe
Confidence 457889999999999998743 3444444333332 46789999999999999999999998754 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecC
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY 353 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~ 353 (482)
++++.+.++|+....++.+|..+ .++||||||+|.+.+.++.+.+....+++++|+..+++ ..++||++|+
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99999999999988888888765 45999999999999887766667778889999999874 4677887765
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.... .++++++||+..+.++.|+.+++.+|++.++.... ..++.+.+..++.... ...
T Consensus 230 ~~~~-----l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~l~~la~~t~------G~s 287 (357)
T 3d8b_A 230 RPQE-----IDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-----------CCLSEEEIEQIVQQSD------AFS 287 (357)
T ss_dssp CGGG-----BCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-----------BCCCHHHHHHHHHHTT------TCC
T ss_pred Chhh-----CCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-----------CCccHHHHHHHHHHcC------CCC
Confidence 4332 38899999999999999999999999999887642 2356677777777543 457
Q ss_pred cchhHHHHHHHHHHhhhhhcC---CCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 434 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
++++++++..|......++.. ......+...|+.+||..|+++++|.
T Consensus 288 ~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 288 GADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp HHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCC
Confidence 899999999887665444321 12223445689999999999999984
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=242.05 Aligned_cols=245 Identities=19% Similarity=0.277 Sum_probs=191.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+..++++++++.. +..++..+..++..++.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn~ 271 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING 271 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEEH
T ss_pred CHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEEc
Confidence 477899999999999987543 333333333445567889999999999999999999997754 8999999
Q ss_pred ccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~ 356 (482)
+++.+.++|++...++.+|..+.. +||||||||.+.++++....+...++++.|+..|++ ..++||+||+...
T Consensus 272 ~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 999999999999999999987754 699999999999998877778888999999999974 5678888866543
Q ss_pred HHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 357 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 357 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
. .+|++++ ||+..++|+.|+.++|.+|++.+++... +..+.+.+.++..+. ...+
T Consensus 352 ~-----Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~---------l~~~~~l~~la~~t~---------g~s~ 408 (489)
T 3hu3_A 352 S-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETH---------GHVG 408 (489)
T ss_dssp G-----BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC---------BCTTCCHHHHHHTCT---------TCCH
T ss_pred c-----cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC---------CcchhhHHHHHHHcc---------CCcH
Confidence 2 2889988 9999999999999999999999887643 233444444444333 4568
Q ss_pred chhHHHHHHHHHHhhhhhcC------CCCCh--hhhhcccHHHHHHHHHHHHhcC
Q 011578 435 GLVDPMLVNARENLDLRLSF------DCLDT--DELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~------~~~~~--~~~~~i~~~d~~~al~~~~~~~ 481 (482)
+++.+++.+|...+..+... +.... .....|+.+||..|++.++|..
T Consensus 409 ~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 89999999998887666432 11111 1234799999999999999863
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=227.23 Aligned_cols=164 Identities=22% Similarity=0.257 Sum_probs=149.2
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.+.|+.|+.. +.++|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t 127 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITAD-HVSPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHT 127 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCSSCCCTTCCC
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 4567899999999999999999999964 6778888886 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++..+ +|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| +..+
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~~ 201 (285)
T 3d9h_A 128 PLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLA-CENQ 201 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHH----HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHH-HHTT
T ss_pred HHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-HHcC
Confidence 9999999999999999999999998654 5999999999 88899999999999999999999999999555 4567
Q ss_pred ChHHHHHHHhhhHHHH
Q 011578 168 SAKLRELLLWHSEEQR 183 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~ 183 (482)
+.+++++|++.|++.+
T Consensus 202 ~~~~v~~Ll~~ga~~~ 217 (285)
T 3d9h_A 202 QRACVKKLLESGADVN 217 (285)
T ss_dssp CHHHHHHHHHTTCCTT
T ss_pred cHHHHHHHHHCCCCCC
Confidence 8889999999888765
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-28 Score=222.08 Aligned_cols=168 Identities=30% Similarity=0.400 Sum_probs=151.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHh---hCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (482)
..+..|.||||+||..|+.+.+++|+. ..+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~ 78 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVT----AGASPMALDRH 78 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTT
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc-CCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCC
Confidence 467889999999999999999999986 478889998886 9999999999999999999999 57889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCC----CccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC-CCCCChh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGA----FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPL 159 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl 159 (482)
|.||||+|+..|+.+++++|+++++ +++..|..|+||||+|+ ..|+.+++++|+++|++++..+ ..|.|||
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L 154 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV----NTECQETVQLLLERGADIDAVDIKSGRSPL 154 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH----HcCCHHHHHHHHHcCCCcccccccCCCcHH
Confidence 9999999999999999999999987 89999999999999999 7889999999999999999999 7899999
Q ss_pred hhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 160 DHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
|+|+ ..++.+++++|+++|++.+.+
T Consensus 155 ~~A~-~~~~~~~v~~Ll~~g~~~~~~ 179 (241)
T 1k1a_A 155 IHAV-ENNSLSMVQLLLQHGANVNAQ 179 (241)
T ss_dssp HHHH-HTTCHHHHHHHHHTTCCTTCB
T ss_pred HHHH-HcCCHHHHHHHHHcCCCCCCc
Confidence 5555 567888999999998876544
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=217.71 Aligned_cols=163 Identities=29% Similarity=0.381 Sum_probs=145.2
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc-CcCCCChHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYGETPLHM 91 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~tpLh~ 91 (482)
|.||||.||..|+.+.|+.|+..++...+..+.. |+||||+|+..|+.+++++|+++++ ..+++. .+..|+||||+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKME--NVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTCT--TCCGGGCCCTTSCCHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCC-CCCHHHHHHHcCCHHHHHHHHhccc--cccccccCCCCCCCHHHH
Confidence 6899999999999999999998877766667765 9999999999999999999999542 256666 88999999999
Q ss_pred HHHcCCHHHHHHHHhCC--CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 92 AAKNGCNEAAKLLLAHG--AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~g--a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+..|+.+++++|+++| ++++..|..|+||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+ ..++.
T Consensus 79 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~ 153 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV----GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-SVGSL 153 (228)
T ss_dssp HHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCH
T ss_pred HHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHH----HcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH-HcCCH
Confidence 99999999999999999 899999999999999999 889999999999999999999999999995555 46788
Q ss_pred HHHHHHHhhh-HHHH
Q 011578 170 KLRELLLWHS-EEQR 183 (482)
Q Consensus 170 ~~~~lL~~~~-~~~~ 183 (482)
+++++|++.| ++.+
T Consensus 154 ~~v~~Ll~~g~~~~~ 168 (228)
T 2dzn_A 154 KLIELLCGLGKSAVN 168 (228)
T ss_dssp HHHHHHHTTTCCCSC
T ss_pred HHHHHHHhcCccccc
Confidence 8999999888 5543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=233.64 Aligned_cols=233 Identities=22% Similarity=0.312 Sum_probs=177.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+.+..+..+..... ++...+.+++|+||||||||++|+++|++++. +|+.+++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~----~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-------~f~~is~ 82 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNR----IGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHISG 82 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHT----TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEEEG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhh----cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeeeCCH
Confidence 578999999999999998766544443333 34456778999999999999999999998865 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCC---CCChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~---~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++...++|.++..++.+|..+. ++||||||+|.+.++++. +.+....+++++|+..|++ ..++||++|+
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 99999999999999999998764 589999999999988763 2344556788999999973 4577888766
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... .+|++++ ||+..|.|+.|+.++|.+|++.++++.. +..+++...++..+. .
T Consensus 163 ~~~~-----Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~---------l~~~v~l~~la~~t~---------G 219 (476)
T 2ce7_A 163 RPDI-----LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP---------LAEDVNLEIIAKRTP---------G 219 (476)
T ss_dssp CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHTCT---------T
T ss_pred Chhh-----hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC---------CcchhhHHHHHHhcC---------C
Confidence 5432 2888876 9999999999999999999999887642 334455444333222 3
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|+|.+++++|...+..+ ....|+.+||.+|++++.+
T Consensus 220 ~sgadL~~lv~~Aal~A~~~---------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 220 FVGADLENLVNEAALLAARE---------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHHc---------CCCeecHHHHHHHHHHHhc
Confidence 34599999999988765322 2246999999999998753
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=233.49 Aligned_cols=129 Identities=24% Similarity=0.242 Sum_probs=97.2
Q ss_pred CChHHHHHHhCC--cHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCC-----ccccccCCCc
Q 011578 48 AQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-----IEAKANNGMT 120 (482)
Q Consensus 48 g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t 120 (482)
|+||||+|+..| +.++|++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus 138 g~t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 138 GQTALHWCVGLGPEYLEMIKILVQ----LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp CCCHHHHHHHSCGGGHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred CCCHHHHHHHcCCchHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence 777777777777 7777777777 4667777777788888888888888888888877777 7777778888
Q ss_pred ceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 121 pLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
|||+|+ ..|+.+++++|+++|+|++.+|..|+||||+ |+..++.+++++|++++++....
T Consensus 214 ~L~~A~----~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~-A~~~g~~~~v~~Ll~~~~~~~~~ 273 (364)
T 3ljn_A 214 HLHWAI----LINWEDVAMRFVEMGIDVNMEDNEHTVPLYL-SVRAAMVLLTKELLQKTDVFLIQ 273 (364)
T ss_dssp TTHHHH----TTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH-HHHTCCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHhChHHHHHHHHHcCCchhhh
Confidence 888887 7777888888888888888888888888844 44456777777777777766443
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=227.07 Aligned_cols=169 Identities=26% Similarity=0.357 Sum_probs=147.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCC---CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENP---SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~---~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (482)
..+..|.||||+||..|+.+.++.|+.... .++|..+.. |+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~ 77 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLG----AGCDPELRDFR 77 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT-CCCHHHHHHHTTCHHHHHCCCS----CCCCSCCCCTT
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCC
Confidence 456789999999999999999999887554 368888876 9999999999999999999999 57889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCC------ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC-CCCC
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAF------IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKT 157 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~-~g~t 157 (482)
|+||||+|+..|+.+++++|+++|++ ++..+..|+||||+|+ ..|+.+++++|+++|++++.++. .|+|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 153 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS----IHGYLGIVELLVSLGADVNAQEPCNGRT 153 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 99999999999999999999999976 5778889999999999 88999999999999999999998 9999
Q ss_pred hhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 158 PLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 158 pl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
|||+|+ ..++.+++++|+++|++.+.+.
T Consensus 154 pL~~A~-~~~~~~~v~~Ll~~ga~~~~~~ 181 (236)
T 1ikn_D 154 ALHLAV-DLQNPDLVSLLLKCGADVNRVT 181 (236)
T ss_dssp HHHHHH-HTTCHHHHHHHHTTTCCSCCCC
T ss_pred HHHHHH-HcCCHHHHHHHHHcCCCCCccc
Confidence 995555 5678899999999998765443
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-27 Score=222.78 Aligned_cols=166 Identities=25% Similarity=0.310 Sum_probs=140.0
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++ +++++..+ .|.|
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~-~g~t 159 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQH----GASVQPES-DLAS 159 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTT-CCCHHHHHHHHTCHHHHHHHHHT----TCCSSCSC-TTSC
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHcCHHHHHHHHHHC----CCCCCCCC-CCCC
Confidence 346679999999999999999998885 47778888876 99999999999999999999994 55666543 4899
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++. |..|+||||+| +..+
T Consensus 160 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A-~~~~ 233 (285)
T 3d9h_A 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC----ENQQRACVKKLLESGADVNQ-GKGQDSPLHAV-VRTA 233 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH----HTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHH-HHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHH-HHcC
Confidence 999999999999999999999999999999999999999 78889999999999999984 88899999544 4567
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++.+.+.
T Consensus 234 ~~~~v~~Ll~~gad~~~~d 252 (285)
T 3d9h_A 234 SEELACLLMDFGADTQAKN 252 (285)
T ss_dssp CHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHHHCCCCCCCcC
Confidence 7788888888888766543
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-28 Score=226.82 Aligned_cols=175 Identities=23% Similarity=0.263 Sum_probs=143.0
Q ss_pred ccccCCCCCchHhHHHHHcCCHHHHHHHHhh---CCCCcc----CCCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCC
Q 011578 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRE---NPSLLN----ERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGND 74 (482)
Q Consensus 5 ~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~---~~~~~~----~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~ 74 (482)
.....+..|.||||+||..|+.+.|+.||.. .+..++ ..+. .|+||||+|+.. |+.++|++|+++|++.
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE-TGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTT-TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCc-CCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 3456678899999999999999999998863 454444 2344 499999999987 9999999999953321
Q ss_pred -------CcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccccc--------------CCCcceeeehhhccCCC
Q 011578 75 -------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN--------------NGMTPLHLSVWYSIRSE 133 (482)
Q Consensus 75 -------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--------------~g~tpLh~A~~~~~~~~ 133 (482)
...+..+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+ ..|
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~g 159 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA----CTN 159 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH----HTT
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH----HcC
Confidence 111223677899999999999999999999999999999997 7999999999 889
Q ss_pred hHHHHHHHhh---CCCCccccCCCCCChhhhhhcCCCC--------hHHHHHHHhhhHHHHH
Q 011578 134 DYATVKTLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AKLRELLLWHSEEQRK 184 (482)
Q Consensus 134 ~~~~v~~Ll~---~gad~~~~d~~g~tpl~~~a~~~~~--------~~~~~lL~~~~~~~~~ 184 (482)
+.+++++|++ +|++++.+|..|+||||+|+..+.. .+++++|+.+|++.+.
T Consensus 160 ~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~ 221 (273)
T 2pnn_A 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221 (273)
T ss_dssp CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999 9999999999999999777765443 6788899999988753
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-28 Score=231.14 Aligned_cols=166 Identities=18% Similarity=0.110 Sum_probs=124.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.+.|+.|+.. +.+++..+ |+||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~ 96 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLLE---NEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGN 96 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCCT---TCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSC
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCC---CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCC
Confidence 45567788888888888888888888854 56666663 7888888888888888888888 5777888888888
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCC-CcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG-MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
||||+|+..|+.+++++|+++|++++.+|..| .||||+|+ ..|+.+++++|+++|+++... ..|+||||+|+ .
T Consensus 97 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~-~ 170 (285)
T 3kea_A 97 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV----MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI-K 170 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH----HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH-H
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH----HcCCHHHHHHHHhCCCccccc-cCCccHHHHHH-H
Confidence 88888888888888888888888888888888 68888888 666777777777777665222 16677774433 3
Q ss_pred CCChHHHHHHHhhhHHHHHHh
Q 011578 166 PGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.++.+++++|+++|++++.+.
T Consensus 171 ~g~~~~v~~Ll~~gad~n~~~ 191 (285)
T 3kea_A 171 NGHVDMMILLLDYMTSTNTNN 191 (285)
T ss_dssp TTCHHHHHHHHHHHHHTCTTC
T ss_pred cChHHHHHHHHHcCCCCCccc
Confidence 456666666666666655443
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-28 Score=206.65 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=117.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....|.||||+||..|+.+.|+.|+.. +.+++..+.. |+||||+|+ .|+.+++++|++ .+++++.+|..|+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~-~~~~~~v~~Ll~----~g~~~~~~d~~g~t 79 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSY-GRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLT 79 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCC-CCCHHHHHH-cCCHHHHHHHHH----cCCCCCCcCCCCCc
Confidence 4567789999999999999999999955 7788888886 999999986 999999999999 57889999999999
Q ss_pred -HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhh
Q 011578 88 -PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 88 -pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||.+
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE----ELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH----HHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999999999999999999999999999999999999999 788999999999999999999999999983
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=229.36 Aligned_cols=100 Identities=28% Similarity=0.354 Sum_probs=81.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++|+.|++ .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~g~~~iv~~Ll~----~g~~~~~~~~~g~t 126 (351)
T 3utm_A 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKG-GLVPLHNACSYGHYEVTELLLK----HGACVNAMDLWQFT 126 (351)
T ss_dssp CSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCC-CCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 345678899999999999999988885 46778888776 8899999999999999999998 56778888888888
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEA 113 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~ 113 (482)
|||+|+..|+.+++++|+++|++++.
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 127 PLHEAASKNRVEVCSLLLSHGADPTL 152 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 88888888888888887777766554
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-27 Score=227.81 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=148.3
Q ss_pred ccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 3 ~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
.|.+.... .|.||||+||..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|
T Consensus 53 ~g~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~ 125 (285)
T 3kea_A 53 AGALKNLL-ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVK----KNWRLMFYG 125 (285)
T ss_dssp TTGGGSCC-TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCS
T ss_pred CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHh----cCCCCCccC
Confidence 34444444 58999999999999999999885 47778888876 9999999999999999999999 588899999
Q ss_pred CCC-ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCCh-hh
Q 011578 83 MYG-ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP-LD 160 (482)
Q Consensus 83 ~~g-~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tp-l~ 160 (482)
..| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+ ..|+.+++++|+++|++++.+|..|+|| |
T Consensus 126 ~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~----~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L- 199 (285)
T 3kea_A 126 KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI----KNGHVDMMILLLDYMTSTNTNNSLLFIPDI- 199 (285)
T ss_dssp SSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH----HTTCHHHHHHHHHHHHHTCTTCCCBCCTTH-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH----HcChHHHHHHHHHcCCCCCcccCCCCChHH-
Confidence 999 79999999999999999999999887332 28999999999 8889999999999999999999999998 8
Q ss_pred hhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 161 HLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+.|...++.+++++|+++|++++...
T Consensus 200 ~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 200 KLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 44555778899999999999877665
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=229.88 Aligned_cols=244 Identities=22% Similarity=0.268 Sum_probs=177.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+++ ..+..+...+.... .++.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~---~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~ 181 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIV---ILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISA 181 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHT---HHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECS
T ss_pred ChHHhCCHHHHHHHHHHHH---HHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeH
Confidence 5789999999999999874 34444444444443 35679999999999999999999998765 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecCc
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS 354 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~~ 354 (482)
+++.+.|+|+....++.+|..+. ++||||||||.+...++....+...++++.|+..|++ ..++||++|+.
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999999999988998887654 4999999999999887766666777888899988873 45788887654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
.. . .++++++||+..+.|+.|+.+++.+|++.++.+.. ..++.+.+..++.... ...+
T Consensus 262 ~~--~---l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~~~~la~~~~------g~~~ 319 (389)
T 3vfd_A 262 PQ--E---LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-----------SPLTQKELAQLARMTD------GYSG 319 (389)
T ss_dssp GG--G---CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------CCSCHHHHHHHHHHTT------TCCH
T ss_pred ch--h---cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 32 2 38999999999999999999999999999887643 2456677777776543 5677
Q ss_pred chhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 435 GLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
+++..++..|......++... .....+...|+.+||..+++.++|.
T Consensus 320 ~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 320 SDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 899999888877665554321 1222345689999999999987663
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=221.93 Aligned_cols=158 Identities=24% Similarity=0.284 Sum_probs=136.8
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC------
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------ 81 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------ 81 (482)
..+..|.||||+||..|+.++|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++|+ +++..
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t 141 (299)
T 1s70_B 68 YANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGA----HVGAVNSEGDT 141 (299)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCC----CCCCcCCCCCC
Confidence 356779999999999999999999995 57888888886 9999999999999999999999644 44333
Q ss_pred ------------------------------------------------------cCCCChHHHHHHHcCCHHHHHHHHhC
Q 011578 82 ------------------------------------------------------NMYGETPLHMAAKNGCNEAAKLLLAH 107 (482)
Q Consensus 82 ------------------------------------------------------~~~g~tpLh~A~~~g~~~~v~~Ll~~ 107 (482)
+..|.||||+|+..|+.+++++|+++
T Consensus 142 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 221 (299)
T 1s70_B 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221 (299)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence 34688999999999999999999999
Q ss_pred CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHH
Q 011578 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176 (482)
Q Consensus 108 ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~ 176 (482)
|++++.+|..|+||||+|+ ..|+.+++++|+++|+|++.+|..|+||||+| .......+.+++.
T Consensus 222 g~d~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A-~~~~~~~l~~l~~ 285 (299)
T 1s70_B 222 RYDVNIKDYDGWTPLHAAA----HWGKEEACRILVENLCDMEAVNKVGQTAFDVA-DEDILGYLEELQK 285 (299)
T ss_dssp TCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC-CSGGGHHHHHHHH
T ss_pred CCCCCCcCCCCCcHHHHHH----hcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999 88999999999999999999999999999555 4444444444444
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=212.70 Aligned_cols=232 Identities=19% Similarity=0.281 Sum_probs=176.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+.+.+..+..+ ......+...+.+++|+||||||||++|+++|+.+.. +++.++
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~i~ 77 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREP----SRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS 77 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCG----GGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCH----HHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------CEEEEe
Confidence 35789999999999999876554322 2333344456778999999999999999999998754 789999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++...++|++...++.+|..+. ++|+||||+|.+.+.++.. ..+...+.++.++..+++ ..++||++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 157 (257)
T 1lv7_A 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157 (257)
T ss_dssp SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEee
Confidence 999999999999989999998764 3799999999999877632 234445778889988874 457777776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++.+ ||+..+.|+.|+.++|.+|++.++++.. +.++.+... ++. .|
T Consensus 158 n~~~~-----l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~---------l~~~~~~~~---la~-~~------ 213 (257)
T 1lv7_A 158 NRPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---------LAPDIDAAI---IAR-GT------ 213 (257)
T ss_dssp SCTTT-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHH---HHH-TC------
T ss_pred CCchh-----CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC---------CCccccHHH---HHH-Hc------
Confidence 55432 2788887 9999999999999999999999887542 333434332 222 22
Q ss_pred cc-CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 431 EM-NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 431 ~~-~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+| |+|++++++++|...+..+ ....|+.+||.+|++.+.
T Consensus 214 ~G~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 214 PGFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCcccHHHHHHHHHHHh
Confidence 45 9999999999998876332 225799999999999875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-27 Score=224.10 Aligned_cols=245 Identities=22% Similarity=0.307 Sum_probs=181.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+.+.+ ..+..+++....+. .++.+++|+||||||||++|+++|+.+.. +|+.++
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i---~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~ 86 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMV---ILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNIS 86 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHT---HHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHH---HhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEee
Confidence 35789999999999999873 34444444444333 35679999999999999999999998754 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~vi~~~ 352 (482)
++++.+.++|+++..++.+|..+ .++||||||+|.+...++....+...++.+.|+..+++ ..++||++|
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~t 166 (297)
T 3b9p_A 87 AASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT 166 (297)
T ss_dssp STTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEE
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeec
Confidence 99999999999888888887654 46999999999999887755455556777788887764 346777775
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
+.... .+|++++||+..+.++.|+.+++..|++.++.+.. ..++.+.+..++.... ..
T Consensus 167 n~~~~-----l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~~~~la~~~~------g~ 224 (297)
T 3b9p_A 167 NRPQE-----LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-----------SPLDTEALRRLAKITD------GY 224 (297)
T ss_dssp SCGGG-----BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-----------CCSCHHHHHHHHHHTT------TC
T ss_pred CChhh-----CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CC
Confidence 54331 28889999999999999999999999999887642 2356677777776543 56
Q ss_pred CcchhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 433 NGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.+++++++++.|......++... .....+...|+.+||..|++.++|.
T Consensus 225 ~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 225 SGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp CHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 67899999998877665444211 1112234579999999999887763
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=235.74 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=126.1
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC----------------
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN---------------- 73 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~---------------- 73 (482)
+..|.||||+||..|+.++|+.||.. +.+++..+.. |+||||+||..|+.++|++|++++++
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRF-GCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 34455666666666666666655533 4445555554 56666666666666666666554321
Q ss_pred -----------C----Cccccc-----------------CcCCCChHHHHHHHcC--CHHHHHHHHhCCCCccccccCCC
Q 011578 74 -----------D----KVELEA-----------------QNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGM 119 (482)
Q Consensus 74 -----------~----~~~~~~-----------------~~~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~ 119 (482)
. +.+++. +|..|.||||+|+..| +.+++++|+++|++++.+|..|+
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~ 174 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE 174 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence 1 334443 7788999999999999 99999999999999999999999
Q ss_pred cceeeehhhccCCChHHHHHHHhhCCCC-----ccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 120 TPLHLSVWYSIRSEDYATVKTLLEYNAD-----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 120 tpLh~A~~~~~~~~~~~~v~~Ll~~gad-----~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
||||+|+ ..|+.+++++|+++|++ ++.+|..|+||||+ |+..++.+++++|+++|++++.+.
T Consensus 175 t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~gad~~~~d 241 (364)
T 3ljn_A 175 TPLMRAM----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW-AILINWEDVAMRFVEMGIDVNMED 241 (364)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH-HHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred CHHHHHH----HcCCHHHHHHHHhcccccccccccccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCCCC
Confidence 9999999 88899999999999988 99999999999954 455778889999999988865443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-27 Score=220.09 Aligned_cols=234 Identities=19% Similarity=0.292 Sum_probs=161.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+++..+..+. .....+...+.+++|+||||||||++|+++|+.++. +++.+++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~----~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~ 72 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPE----RFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAG 72 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC----------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHH----HHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEech
Confidence 47889999999999998866543322 223344567789999999999999999999998865 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC----ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~----~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
+++...+.|.+...++.+|..+. ++||||||+|.+..++.... +......++.|+..+++ ..+++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t 152 (262)
T 2qz4_A 73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST 152 (262)
T ss_dssp TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence 99988888888888888888764 69999999999987664321 22334667888888775 457777776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH-HHHHHHHHHhhHhhc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD-AIAALIEKETTEKQR 429 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 429 (482)
+.... + ++++.+ ||+..++|+.|+.+++.+|++.++.+.. +.. +.+ .+..++...
T Consensus 153 n~~~~--l---d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-------~~~----~~~~~~~~l~~~~------ 210 (262)
T 2qz4_A 153 NRADI--L---DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-------LTQ----SSTFYSQRLAELT------ 210 (262)
T ss_dssp SCGGG--G---GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-------CCB----THHHHHHHHHHTC------
T ss_pred CChhh--c---CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-------CCc----chhhHHHHHHHHC------
Confidence 54332 2 788888 9999999999999999999999998653 111 222 223333322
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
....+++++++++.|...+.. .....|+.+||..|++++.+
T Consensus 211 ~g~~~~~l~~l~~~a~~~a~~---------~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 211 PGFSGADIANICNEAALHAAR---------EGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp TTCCHHHHHHHHHHHHTC-----------------CCBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHhcc
Confidence 245678999999988765421 23457999999999998875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=219.40 Aligned_cols=234 Identities=22% Similarity=0.315 Sum_probs=179.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+.+++.+.+++.. +...+......+...+.+++|+||||||||++|+++|+.++. +++.+++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 84 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVVG 84 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEEG
T ss_pred CHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeh
Confidence 578899999999999987543 222222222334456788999999999999999999998765 8999999
Q ss_pred ccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++...++|.....+..+|..+ .++||||||+|.+.++++... .......+..++..++. +.++||++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 9999999999988888888765 447999999999988776442 33445677777777753 4677888765
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... .+|++++ ||+..+.|+.|+.+++.+|++.++.... +..+.+...++..+. .
T Consensus 165 ~~~~-----l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~l~~~~~---------g 221 (285)
T 3h4m_A 165 RPDI-----LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---------LAEDVNLEEIAKMTE---------G 221 (285)
T ss_dssp CGGG-----BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHHCT---------T
T ss_pred Cchh-----cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC---------CCCcCCHHHHHHHcC---------C
Confidence 4432 2788888 9999999999999999999999887543 234445555555544 4
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
.+++++++++..|...+..+- ...|+.+||.+|++++.+
T Consensus 222 ~~~~~i~~l~~~a~~~a~~~~---------~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 222 CVGAELKAICTEAGMNAIREL---------RDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT---------CSSBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc---------cCcCCHHHHHHHHHHHHh
Confidence 468899999999988764432 246999999999998864
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-27 Score=230.05 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=125.3
Q ss_pred cccccc--CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc---HHHHHHHHcCCCCCCcc
Q 011578 3 KNQDRR--SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKVE 77 (482)
Q Consensus 3 ~~~~~~--~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~ 77 (482)
.|.+.. .+..|.||||+||..|+.++|+.||+ .+.++|..+.. |+||||+|+..|+ .++++.|+++ ..++
T Consensus 119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~~-g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~~ 193 (327)
T 1sw6_A 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDY---LYPC 193 (327)
T ss_dssp SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHHH---HGGG
T ss_pred cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCC-CCCHHHHHHHhcccccHHHHHHHHHh---hhcc
Confidence 344443 47889999999999999999999995 47889988886 9999999999999 6888888874 2367
Q ss_pred cccCcCCCChHHHHHHH----cCCHHHHHHHHhCC--------------------C------------------------
Q 011578 78 LEAQNMYGETPLHMAAK----NGCNEAAKLLLAHG--------------------A------------------------ 109 (482)
Q Consensus 78 ~~~~~~~g~tpLh~A~~----~g~~~~v~~Ll~~g--------------------a------------------------ 109 (482)
++.+|..|+||||+|+. .|+.+++++|++.+ +
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~ 273 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHH
Confidence 99999999999999999 89999999999873 3
Q ss_pred -CccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 110 -FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 110 -~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
+++.+|.+|+||||+|+ ..|+.++|++|+++|+|++.+|..|+||||+|+.
T Consensus 274 ~~~n~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 274 NMLNAQDSNGDTCLNIAA----RLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HTTTCCCTTSCCHHHHHH----HHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred hCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence 46677777888888888 6677888888888888888888888888855554
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=223.28 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=142.8
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHh---hCCCCccCCC---CCCCChHHHHHH---hCCcHHHHHHHHcCCCCC------
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERN---PVMAQTPLHVSA---GYNKAEIVKSLLEWPGND------ 74 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~~~---~~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~~------ 74 (482)
+.-+.++||.||..|+.+.|+.++. ..+..++..+ +..|+||||+|+ ..|+.+++++|++++++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 3457899999999999998777765 3556666554 134999999999 779999999999954321
Q ss_pred -CcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccc--------------cCCCcceeeehhhccCCChHHHHH
Q 011578 75 -KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVK 139 (482)
Q Consensus 75 -~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~tpLh~A~~~~~~~~~~~~v~ 139 (482)
..+++..|..|+||||+||..|+.++|++|+++|++++.++ .+|+||||+|+ ..|+.++++
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~g~~~~v~ 157 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA----CTNQPHIVH 157 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH----HTTCHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH----HcCCHHHHH
Confidence 13355566789999999999999999999999999999998 68999999999 889999999
Q ss_pred HHhh---CCCCccccCCCCCChhhhhhcCCCC--------hHHHHHHHhhhHHHH
Q 011578 140 TLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AKLRELLLWHSEEQR 183 (482)
Q Consensus 140 ~Ll~---~gad~~~~d~~g~tpl~~~a~~~~~--------~~~~~lL~~~~~~~~ 183 (482)
+|++ +|++++.+|..|+||||+|+..+.. .+++++|+++|++..
T Consensus 158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~ 212 (260)
T 3jxi_A 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212 (260)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence 9999 9999999999999999777754432 578999999999873
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-27 Score=214.40 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=133.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
....++.||||+||..|+.+.|+.||.. +.++|..+.. |+||||+||..|+.+++++|++ .|++++.+|..|+|
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~t 89 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEE-GITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWT 89 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCC
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 3455788999999999999999999965 6678888876 9999999999999999999999 58889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeee--hhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS--VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A--~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
|||+|+..|+.+++++|+++|++++.++ .+|+||||+| + ..|+.+++++|+++|++++.+|..|.||++.++.
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~ 165 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY----REGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTT----STTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHH----hcChHHHHHHHHHcCCCcccccCCchHHHHHHhh
Confidence 9999999999999999999999999986 6999999999 8 8999999999999999988888888888854444
Q ss_pred C
Q 011578 165 G 165 (482)
Q Consensus 165 ~ 165 (482)
.
T Consensus 166 ~ 166 (229)
T 2vge_A 166 E 166 (229)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-27 Score=198.64 Aligned_cols=131 Identities=24% Similarity=0.287 Sum_probs=69.9
Q ss_pred CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC-
Q 011578 39 LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN- 117 (482)
Q Consensus 39 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~- 117 (482)
+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+. |+.+++++|+++|++++.+|..
T Consensus 4 ~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 4 GIHMLGGS-SDAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCSCCCCC-CSCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred CccCCCCC-CccHHHHHHHcCCHHHHHHHHH----cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence 34444443 5555555555555555555555 344555555555555555555 5555555555555555555555
Q ss_pred CCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhH
Q 011578 118 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 118 g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+
T Consensus 78 g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~-~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 78 LTRPVHDAA----REGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE-EQGHRDIARYLHAATG 135 (136)
T ss_dssp TBCHHHHHH----HHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH-HHTCHHHHHHHHHHHC
T ss_pred CCCHHHHHH----HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH-HcCCHHHHHHHHHcCC
Confidence 555555555 445555555555555555555555555553332 2344555555555443
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=232.10 Aligned_cols=166 Identities=29% Similarity=0.395 Sum_probs=136.3
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+|+..|+.+.++.|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .+++++..|..|.||
T Consensus 208 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~ 281 (437)
T 1n11_A 208 PAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTP 281 (437)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCH
Confidence 34567788888888888888887774 45567777665 8888888888888888888888 577788888888999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|+++|.+|..|+||||+|+ ..++
T Consensus 282 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~-~~g~ 356 (437)
T 1n11_A 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS----HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA-QQGH 356 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH----HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTC
T ss_pred HHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHH----HcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH-HCCh
Confidence 99999999999999999999999888889999999998 778889999999999999999999999995554 4667
Q ss_pred hHHHHHHHhhhHHHHHH
Q 011578 169 AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 169 ~~~~~lL~~~~~~~~~~ 185 (482)
.+++++|+++|++++.+
T Consensus 357 ~~iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 357 TDIVTLLLKNGASPNEV 373 (437)
T ss_dssp HHHHHHHHHTTCCSCCC
T ss_pred HHHHHHHHHCcCCCCCC
Confidence 88888888888876543
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=217.32 Aligned_cols=171 Identities=25% Similarity=0.223 Sum_probs=124.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC------
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------ 81 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------ 81 (482)
..+..|.||||+|+..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++ +++++..
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~~~~ 140 (285)
T 1wdy_A 67 LRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFY-GFTAFMEAAVYGKVKALKFLYKR----GANVNLRRKTKED 140 (285)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCCCCHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCcc-cCCHHHHHHHhCCHHHHHHHHHh----CCCcccccccHHH
Confidence 345678888888888888888888774 46667777765 88888888888888888888884 5555555
Q ss_pred ----cCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC
Q 011578 82 ----NMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK 156 (482)
Q Consensus 82 ----~~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~ 156 (482)
+..|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..+......+++++|+++|++++.+|..|+
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~ 220 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC
Confidence 67788888888888888888888876 7888888888888888887322111227788888888888888888888
Q ss_pred ChhhhhhcCCCChHHHHHHHh-hhHHHHHH
Q 011578 157 TPLDHLSNGPGSAKLRELLLW-HSEEQRKR 185 (482)
Q Consensus 157 tpl~~~a~~~~~~~~~~lL~~-~~~~~~~~ 185 (482)
||||+|+. .++.+++++|++ +|++.+.+
T Consensus 221 t~L~~A~~-~~~~~~v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 221 TPLILAVE-KKHLGLVQRLLEQEHIEINDT 249 (285)
T ss_dssp CHHHHHHH-TTCHHHHHHHHHSSSCCTTCC
T ss_pred cHHHHHHH-cCCHHHHHHHHhccCCCcccc
Confidence 88854444 456666666665 66654433
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=195.28 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=121.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCC-C
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-G 85 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g 85 (482)
...+..|.||||+|+..|+.+.++.|++. +.+++..+.. |+||||+|+. |+.+++++|++ .+++++.+|.. |
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~~g 78 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRF-GRRPIQVMMM-GSAQVAELLLL----HGAEPNCADPATL 78 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-CCTTTTTSTT-SCHHHHHHHHH----HTCCSSCCBTTTT
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCC-CCCHHHHHHc-CCHHHHHHHHH----CCCCCCCcCCCCC
Confidence 45677899999999999999999999955 6778888876 9999999999 99999999999 68889999999 9
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE----EQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH----HHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999 78899999999999986
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=223.85 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=142.9
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc----HHHHHHHHcCCCCCCcccccCcCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMY 84 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (482)
.+..|.||||+||..|+.++|+.||.+.+.++|..+.. |.||||+++..++ ..++++|++ .|+++|.+|..
T Consensus 164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~-g~t~l~~~~~~~~~~~~~~i~~lLl~----~gad~n~~d~~ 238 (337)
T 4g8k_A 164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM-GRNALIHALLSSDDSDVEAITHLLLD----HGADVNVRGER 238 (337)
T ss_dssp CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTT-SCCHHHHHHHHSCTTTHHHHHHHHHH----TTCCTTCCCGG
T ss_pred ccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCC-CCcHHHHHHHHcCcccHHHHHHHHHH----CCCCCCCcCCC
Confidence 44568999999999999999999998889999999987 9999998876543 568899999 68889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
|+||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+ ..|+.++|++|+++|+|+|.+ +||| .|
T Consensus 239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~----~~g~~~iv~~Ll~~GAd~n~~-----~~L~-~A 308 (337)
T 4g8k_A 239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV----ELKLKKIAELLCKRGASTDCG-----DLVM-TA 308 (337)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHTTSCSSTTC-----CHHH-HH
T ss_pred CCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCC-----CHHH-HH
Confidence 99999999999999999999985 8999999999999999999 889999999999999999864 5995 45
Q ss_pred cCCCChHHHHHHHhhhHHHHHH
Q 011578 164 NGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
...++.+++++|+++|++++..
T Consensus 309 ~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 309 RRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHTTCHHHHHHHHHTTCCC---
T ss_pred HHcCCHHHHHHHHHCcCCCCCC
Confidence 5567889999999999987644
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=227.68 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=148.0
Q ss_pred cccc-ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.|.+ ...+..|.||||+||..|+.++|+.||. .+.+++..+.. |.||||+|+..|+.+++++|++++. .+++++..
T Consensus 155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~ 231 (373)
T 2fo1_E 155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTK-LKGDIEEL 231 (373)
T ss_dssp TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTTSHH-HHHTTSCC
T ss_pred cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCC-CCCHHHHHHHCCCHHHHHHHHhcCc-cccChhhc
Confidence 3433 3456789999999999999999999885 57778888876 9999999999999999999998411 12788999
Q ss_pred cCCCChHHHHHHHcC---CHHHHHHHHhCCCCccc--------cccCCCcceeeehhhccCCChHHHHHHHhhCC-CCcc
Q 011578 82 NMYGETPLHMAAKNG---CNEAAKLLLAHGAFIEA--------KANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCS 149 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g-ad~~ 149 (482)
|..|.||||+|+..+ +.+++++|+++|++++. .|..|+||||+|+ ..|+.+++++|+++| ++++
T Consensus 232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~----~~g~~~~v~~Ll~~~~~~~n 307 (373)
T 2fo1_E 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA----QVSNMPIVKYLVGEKGSNKD 307 (373)
T ss_dssp CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH----SSCCHHHHHHHHHHSCCCTT
T ss_pred CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHH----HhCCHHHHHHHHHhcCCCcc
Confidence 999999999999988 89999999999999886 5678999999999 889999999999775 9999
Q ss_pred ccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 150 ~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
.+|..|+||||+|+ ..++.+++++|+++|++.+.+
T Consensus 308 ~~d~~g~TpL~~A~-~~g~~~iv~~Ll~~gad~~~~ 342 (373)
T 2fo1_E 308 KQDEDGKTPIMLAA-QEGRIEVVMYLIQQGASVEAV 342 (373)
T ss_dssp CCCTTCCCHHHHHH-HHTCHHHHHHHHHTTCCSSCC
T ss_pred CcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCccCC
Confidence 99999999995554 467888899999988876544
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-26 Score=225.15 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=145.3
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCC--CCccCCCCCCCChHHHHHHhCC---cHHHHHHHHcCCCCCCccccc-
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEA- 80 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~- 80 (482)
...+..|.||||+|+..|+.++++.|+..+. .+++..+.. |+||||+|+..+ +.+++++|+++ +++++.
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~~~~v~~Ll~~----g~~~~~~ 267 (373)
T 2fo1_E 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVEK----GAKVDYD 267 (373)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT-SCCHHHHHHHSCSTTHHHHHHHHHHH----TCCSSCC
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC-CCCHHHHHHHhCCcchHHHHHHHHHC----CCCcccc
Confidence 3456789999999999999999999986532 577888876 999999999998 89999999995 555554
Q ss_pred -------CcCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 81 -------QNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 81 -------~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
.|..|.||||+|+..|+.++|++|++++ ++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|
T Consensus 268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~----~~g~~~iv~~Ll~~gad~~~~d 343 (373)
T 2fo1_E 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA----QEGRIEVVMYLIQQGASVEAVD 343 (373)
T ss_dssp SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCSSCCC
T ss_pred cccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccCCC
Confidence 6779999999999999999999999876 999999999999999999 8889999999999999999999
Q ss_pred CCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 153 NEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 153 ~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
..|+||||+ |...++.+++++|.+++++
T Consensus 344 ~~g~t~l~~-A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 344 ATDHTARQL-AQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp SSSCCHHHH-HHHTTCHHHHHHHHTTC--
T ss_pred CCCCCHHHH-HHHcCCHHHHHHHHhcCcc
Confidence 999999955 5557889999999988865
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-26 Score=228.94 Aligned_cols=160 Identities=28% Similarity=0.339 Sum_probs=146.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||.|+..|+.+.|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t 313 (437)
T 1n11_A 240 AESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYT 313 (437)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHh----CCccCCCCCCCCCC
Confidence 455679999999999999999999985 56778888876 9999999999999999999999 58889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.++|++|+++|+++|.+|..|+||||+|+ ..|+.+++++|+++|++++.+|.+|.||+++ |...+
T Consensus 314 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~----~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~-A~~~g 388 (437)
T 1n11_A 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA----QQGHTDIVTLLLKNGASPNEVSSDGTTPLAI-AKRLG 388 (437)
T ss_dssp HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH-HHHTT
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH----HCChHHHHHHHHHCcCCCCCCCCCCCCHHHH-HHHcC
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999955 45567
Q ss_pred ChHHHHHHHhh
Q 011578 168 SAKLRELLLWH 178 (482)
Q Consensus 168 ~~~~~~lL~~~ 178 (482)
+..++++|...
T Consensus 389 ~~~~~~~l~~~ 399 (437)
T 1n11_A 389 YISVTDVLKVV 399 (437)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHhc
Confidence 78888888754
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=199.98 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=126.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++|+.|++. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 103 (172)
T 3v30_A 30 NKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKE-RESALSLASTGGYTDIVGLLLE----RDVDINIYDWNGG 103 (172)
T ss_dssp GCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSC
T ss_pred cCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhccc-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCC
Confidence 44567899999999999999999999965 6778888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCCh
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 158 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 158 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+++..++..|.||
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV----ALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHHHSCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 9999999999999999999999999999999999999999 8889999999999999999999999887
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=225.03 Aligned_cols=233 Identities=22% Similarity=0.300 Sum_probs=177.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.++..+.+....+. .+.....++...+.+++|+||||||||++|++||+++.. +|+.++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~----~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~ 96 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLK----NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 96 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHH----CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhh----chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEe
Confidence 468899999999999998765442 233444555666788999999999999999999998753 899999
Q ss_pred cccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCC----cEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG----KVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~----~~~vi~~~ 352 (482)
++++...++|.....++.+|+.+.. +|+||||+|.+...++.. .++...+.+++|+..|+++ .+++++++
T Consensus 97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence 9999999999988889999998753 899999999998877632 3445568889999999852 34555555
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++++ ||+..|.|+.|+.++|.+|++.+++.. .+..+++...+ +.. |
T Consensus 177 n~p~~-----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~dv~l~~l---A~~-t------ 232 (499)
T 2dhr_A 177 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALL---AKR-T------ 232 (499)
T ss_dssp SCGGG-----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCSSTTHHH---HTT-S------
T ss_pred CChhh-----cCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChHHHHHHH---HHh-c------
Confidence 44433 3899887 999999999999999999999876532 33444443333 322 2
Q ss_pred ccC-cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~-~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
+|+ +|+|++++++|...+..+ ....|+.+||.+|++++.+
T Consensus 233 ~G~~gadL~~lv~~Aa~~A~~~---------~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 233 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTT---------CCSSCCSHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHHhc
Confidence 444 599999999998765322 2246999999999998754
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=221.87 Aligned_cols=137 Identities=31% Similarity=0.407 Sum_probs=128.0
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.++||.||..|+.+.|+.+|...+.+++..+.. |+||||+|+..|+.++|++|++ .|++++.+|..|+||||
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KSTPLHLAAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHH
Confidence 346799999999999999999998888999999886 9999999999999999999999 57889999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK 156 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~ 156 (482)
+|+..|+.+++++|+++|++++..|..|+||||+|+ ..|+.+++++|+++|++++..+..|.
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~ 158 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA----SKNRVEVCSLLLSHGADPTLVNCHGK 158 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCccccCCCC
Confidence 999999999999999999999999999999999999 88999999999999999987765443
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=207.53 Aligned_cols=168 Identities=21% Similarity=0.177 Sum_probs=148.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC-cCCCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGE 86 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~ 86 (482)
..++.+.|+||.|+..|+.+.++.|++. +.+++..+.. |.||||+|+..|+.+++++|+++ +.+++.. +..|.
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~ 77 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKE-NVTLLHWAAINNRIDLVKYYISK----GAIVDQLGGDLNS 77 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCBTTTTB
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHHHc----CCcchhhcCCcCC
Confidence 3466788999999999999999999954 5778888876 99999999999999999999994 5555544 45599
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..|+.+++++|+++|++++.+|..|.||||+++..+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~ 153 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA----QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT 153 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 888999999999999999999999999998888777
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
+...+.++|...+++.+..
T Consensus 154 ~~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 154 HSVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp CSSTTHHHHHHTTCCTTCC
T ss_pred ChHHHHHHHHhcCCCcchh
Confidence 7788999999888775544
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=212.07 Aligned_cols=166 Identities=25% Similarity=0.279 Sum_probs=149.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
+..|.||||+||..|+.++++.|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|.|||
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L 109 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKN-GATPFLLAAIAGSVKLLKLFLS----KGADVNECDFYGFTAF 109 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTCCBHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCcccCCHH
Confidence 5678999999999999999999995 46778888876 9999999999999999999999 5788999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCcccc----------ccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCCCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAK----------ANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTP 158 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~~g~tp 158 (482)
|+|+..|+.+++++|+++|++++.. +..|.||||+|+ ..|+.+++++|++. |++++.+|..|.||
T Consensus 110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 185 (285)
T 1wdy_A 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA----EKGHVEVLKILLDEMGADVNACDNMGRNA 185 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH----HHTCHHHHHHHHHTSCCCTTCCCTTSCCH
T ss_pred HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH----HcCCHHHHHHHHHhcCCCCCccCCCCCCH
Confidence 9999999999999999999999987 788999999999 88899999999987 99999999999999
Q ss_pred hhhhhcCCCC---hHHHHHHHhhhHHHHHH
Q 011578 159 LDHLSNGPGS---AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 159 l~~~a~~~~~---~~~~~lL~~~~~~~~~~ 185 (482)
||+++..+.. .+++++|.++|++.+.+
T Consensus 186 l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~ 215 (285)
T 1wdy_A 186 LIHALLSSDDSDVEAITHLLLDHGADVNVR 215 (285)
T ss_dssp HHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence 9777765443 77889999998875543
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=206.48 Aligned_cols=169 Identities=19% Similarity=0.268 Sum_probs=139.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||.|+..|+.++++.|+..+.. ++......|+||||+|+..|+.+++++|++ .+++++.++..|.|
T Consensus 37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 111 (240)
T 3eu9_A 37 QPDKENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMK----YGADPSLIDGEGCS 111 (240)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTTBCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc-chhhcCCcCCChhHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCC
Confidence 3456789999999999999999999966544 444443348999999999999999999999 57888889999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC-CCCChhhhhhcCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNGP 166 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~-~g~tpl~~~a~~~ 166 (482)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+ .+..+++++|++.|++++..+. .|.||||+|+ ..
T Consensus 112 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~-~~ 187 (240)
T 3eu9_A 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR---THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV-LA 187 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHH-HH
T ss_pred HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh---CChHHHHHHHHhcCCCcchhhccCCCcHHHHHH-Hc
Confidence 99999999999999999999999999999999999999832 2237888888999999988887 8889995444 45
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
++.+++++|+++|++++.+
T Consensus 188 ~~~~~v~~Ll~~g~~~~~~ 206 (240)
T 3eu9_A 188 GNTTVISLLLEAGANVDAQ 206 (240)
T ss_dssp TCHHHHHHHHHHTCCTTCB
T ss_pred CCHHHHHHHHHcCCCCCCc
Confidence 6778888888888776544
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=218.01 Aligned_cols=172 Identities=24% Similarity=0.247 Sum_probs=147.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC---------CCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN---------PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~---------~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 78 (482)
..+..|.||||+|+..|+.+.++.++.. +.+++... ...|.||||+|+..|+.++|++||++ .|+++
T Consensus 120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~---~gad~ 195 (337)
T 4g8k_A 120 ECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADV 195 (337)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH---SCCCT
T ss_pred hhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc---cCCCc
Confidence 4567899999999999999999998854 44454322 12389999999999999999999964 58899
Q ss_pred ccCcCCCChHHHHHHHcCC----HHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCC
Q 011578 79 EAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDN 153 (482)
Q Consensus 79 ~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~ 153 (482)
+.+|..|.||||+++..+. ..++++|+++|+++|.+|.+|+||||+|+ ..|+.+++++|++. |++++.+|.
T Consensus 196 n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~----~~~~~~~v~~Ll~~~~~~vn~~d~ 271 (337)
T 4g8k_A 196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQEHIEINDTDS 271 (337)
T ss_dssp TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH----HTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HhhhhHHHHHHHHhcCCcccCcCC
Confidence 9999999999999887544 46889999999999999999999999999 88999999999975 899999999
Q ss_pred CCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 154 EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 154 ~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
+|+||||+| +..++.+++++|+++|++++.++++
T Consensus 272 ~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~~L 305 (337)
T 4g8k_A 272 DGKTALLLA-VELKLKKIAELLCKRGASTDCGDLV 305 (337)
T ss_dssp TSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCCHH
T ss_pred CCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCCHH
Confidence 999999555 4567889999999999987765543
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-26 Score=209.64 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=129.2
Q ss_pred CCccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc
Q 011578 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 1 ~~~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (482)
|+.|.+......+.||||.||..|+.+.|+.||. .+.++|..+.. |+||||+||..|+.+++++|++ .+++++.
T Consensus 25 l~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~ 98 (239)
T 1ycs_B 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQ----FGVNVNA 98 (239)
T ss_dssp ------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTT-SCCHHHHHHHHTCHHHHHHHHH----HTCCTTC
T ss_pred hccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCc
Confidence 3456666777888999999999999999999985 45688999886 9999999999999999999999 5888999
Q ss_pred CcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-cceeee--hhhccCCChHHHHHHHhhCCCCcccc------
Q 011578 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM-TPLHLS--VWYSIRSEDYATVKTLLEYNADCSAK------ 151 (482)
Q Consensus 81 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A--~~~~~~~~~~~~v~~Ll~~gad~~~~------ 151 (482)
+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+| + ..|+.+++++|+++|++++..
T Consensus 99 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~----~~g~~~~~~~Ll~~~a~~~~~~~~~~~ 174 (239)
T 1ycs_B 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM----EEGYTQCSQFLYGVQEKMGIMNKGVIY 174 (239)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSS----STTCCCHHHHHHHHHHHTTTTGGGEEE
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHh----hhccHHHHHHHHHhhhcccccccceEE
Confidence 999999999999999999999999999999999998887 999999 6 788999999999999998876
Q ss_pred ---CCCCCChhhhhhcC
Q 011578 152 ---DNEGKTPLDHLSNG 165 (482)
Q Consensus 152 ---d~~g~tpl~~~a~~ 165 (482)
+..+.+|++++...
T Consensus 175 al~d~~~~~~~eLa~~~ 191 (239)
T 1ycs_B 175 ALWDYEPQNDDELPMKE 191 (239)
T ss_dssp ESSCBCCSSTTBCCBCS
T ss_pred EEeccCCCCCCcccccC
Confidence 55577777444443
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=187.73 Aligned_cols=125 Identities=28% Similarity=0.366 Sum_probs=81.9
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.||||+||..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEY-GLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLH 85 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHH
Confidence 4456666666666666666666643 4556666554 6666666666666666666666 45566666666666666
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g 145 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~----~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI----GNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH----HCCCHHHHHHHHHcC
Confidence 666666666666666666666666666666666666 566666666666654
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-25 Score=192.89 Aligned_cols=139 Identities=22% Similarity=0.271 Sum_probs=129.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.
T Consensus 33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~ 106 (179)
T 3f6q_A 33 NQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRG-DDTPLHLAASHGHRDIVQKLLQ----YKADINAVNEHGN 106 (179)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred cccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCC
Confidence 34567899999999999999999999954 7788888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g 155 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++..+..+
T Consensus 107 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~----~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK----APLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC----HHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH----HHHHHHHHHHHHHhhcCcccCCccc
Confidence 9999999999999999999999999999999999999999 8889999999999999999877654
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-25 Score=182.18 Aligned_cols=126 Identities=40% Similarity=0.563 Sum_probs=96.5
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
+|.||||.|+..|+.+.++.|+.. +.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCC-CCcHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHH
Confidence 367788888888888888877754 4556666665 7788888888888888888887 466777777778888888
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+|
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCcHHHHHHHHHcCCC
Confidence 88888888888888888888777778888888887 67778888888877775
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-25 Score=185.87 Aligned_cols=128 Identities=27% Similarity=0.316 Sum_probs=67.5
Q ss_pred cccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 6 ~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
|...+..|.||||+||..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|
T Consensus 3 d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g 76 (137)
T 3c5r_A 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQ----HKALVNTTGYQN 76 (137)
T ss_dssp -CCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCGGG
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCcccCcCCCC
Confidence 33445555555555555555555555553 24444554443 5555555555555555555555 344555555555
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhh
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~ 143 (482)
+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..+..+++.+|.+
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~----~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD----DESMKSLLLLPEK 130 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC----CHHHHHHHSCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh----hccHHHHHhhccc
Confidence 55555555555555555555555555555555555555555 4444444444443
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=188.48 Aligned_cols=128 Identities=27% Similarity=0.330 Sum_probs=112.8
Q ss_pred CCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcc
Q 011578 42 ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121 (482)
Q Consensus 42 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 121 (482)
..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 5 ~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 5 FTNHR-GETLLHIASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp CCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 34444 9999999999999999999999 578899999999999999999999999999999999999999999999
Q ss_pred eeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhh
Q 011578 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 122 Lh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (482)
||+|+ ..|+.+++++|+++|++++.+|..|.||+| .|...+..++..+|.+.+
T Consensus 80 L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 80 LHDAA----KNGHVDIVKLLLSYGASRNAVNIFGLRPVD-YTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCGGG-GCCCHHHHHHHSCC----
T ss_pred HHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHhhccHHHHHhhccccc
Confidence 99999 889999999999999999999999999995 455556666666665544
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-25 Score=186.83 Aligned_cols=124 Identities=31% Similarity=0.419 Sum_probs=115.0
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeeh
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
.|.||||+||..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 38899999999999999999999 57889999999999999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhh
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (482)
..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|
T Consensus 89 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~-~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 ----FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI-GNGNEDLAEILQKLN 136 (136)
T ss_dssp ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHC-
T ss_pred ----HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH-HCCCHHHHHHHHHcC
Confidence 788999999999999999999999999995555 567788999988765
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=186.68 Aligned_cols=129 Identities=27% Similarity=0.350 Sum_probs=117.8
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+
T Consensus 36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 109 (165)
T 3twr_A 36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKG-GLVPLHNACSYGHYEVAELLVK----HGAVVNVADLWKF 109 (165)
T ss_dssp CCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCC
T ss_pred cccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCC-CCCHHHHHHHcCcHHHHHHHHh----CCCCCCCcCCCCC
Confidence 3445678899999999999999999995 46778888886 9999999999999999999999 6888999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ga 146 (482)
||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ . ++.+++++|+++|+
T Consensus 110 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~----~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK----D-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC----T-TCHHHHHHHHTC--
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh----c-CChHHHHHHhhccc
Confidence 9999999999999999999999999999999999999987 5 88999999999886
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=186.13 Aligned_cols=129 Identities=26% Similarity=0.341 Sum_probs=119.4
Q ss_pred ccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 3 ~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
.|.+...+..|.||||+|+..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|
T Consensus 24 ~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~ 97 (153)
T 1awc_B 24 NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKV-DRTPLHMAASEGHANIVEVLLK----HGADVNAKD 97 (153)
T ss_dssp HTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCC
T ss_pred cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHH----cCCCCCCCC
Confidence 35555667889999999999999999999995 56778888876 9999999999999999999999 588899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHH
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~L 141 (482)
..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|
T Consensus 98 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~i~~~L 152 (153)
T 1awc_B 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI----DNGNEDLAEIL 152 (153)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999 88999999987
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-25 Score=180.87 Aligned_cols=126 Identities=44% Similarity=0.625 Sum_probs=117.5
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeeh
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
+|+||||+|+..|+.+++++|++ .+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Confidence 38999999999999999999999 57889999999999999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
..++.+++++|+++|++++.+|..|+||||+ |...++.+++++|+++|++
T Consensus 77 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 ----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHL-AARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHHTCC
T ss_pred ----HcChHHHHHHHHHcCCCCcccCCCCCCHHHH-HHHcCcHHHHHHHHHcCCC
Confidence 8889999999999999999999999999955 5556788999999988864
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=193.28 Aligned_cols=136 Identities=25% Similarity=0.301 Sum_probs=115.9
Q ss_pred CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCc-c
Q 011578 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT-P 121 (482)
Q Consensus 43 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-p 121 (482)
.+.. |.||||+|+..|+.++|++|++ .+++++.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |
T Consensus 8 ~~~~-~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 8 SMEP-SADWLATAAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp --CC-STTHHHHHHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred CCcc-chHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 3443 9999999999999999999999 57889999999999999985 99999999999999999999999999 9
Q ss_pred eeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhHh
Q 011578 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 189 (482)
Q Consensus 122 Lh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~~ 189 (482)
||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++...+....
T Consensus 82 L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~-~~~~~~~v~~Ll~~ga~~~~~~~~g 144 (156)
T 1bi7_B 82 VHDAA----REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE-ELGHRDVARYLRAAAGGTRGSNHAR 144 (156)
T ss_dssp HHHHH----HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH-HHTCHHHHHHHSSCC----------
T ss_pred HHHHH----HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH-HhCHHHHHHHHHHcCCCCCccCcCc
Confidence 99999 788999999999999999999999999995554 5678899999999999887765433
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=188.00 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=120.6
Q ss_pred cccc-ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.|.+ ...+..|.||||+|+. |+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+
T Consensus 27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~ 99 (162)
T 1ihb_A 27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRT-GFAVIHDAARAGFLDTLQTLLE----FQADVNIE 99 (162)
T ss_dssp SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCC
T ss_pred CCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCc
Confidence 3433 3446789999999999 999999999954 7778888876 9999999999999999999999 57889999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCC-ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+ ..|+.+++++|+++|||
T Consensus 100 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR----LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTC--
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH----HcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999998 6999999999999999 88999999999999986
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-25 Score=200.56 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=124.4
Q ss_pred HHHHHhhCCCCccCC--CCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHh
Q 011578 29 FQRLLRENPSLLNER--NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106 (482)
Q Consensus 29 v~~ll~~~~~~~~~~--~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 106 (482)
|+.||.++. +++.. ....|.||||+|+..|+.++|++|++ .+++++.+|..|+||||+||..|+.+++++|++
T Consensus 1 v~~ll~~~~-~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 1 MRSVLRKAG-SPRKARRARLNPLVLLLDAALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CeehhccCC-CCccccccccchhHHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 355665543 33322 22348899999999999999999999 678899999999999999999999999999999
Q ss_pred CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC-CCCCChhhhh-hcCCCChHHHHHHHhhhHHHHH
Q 011578 107 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHL-SNGPGSAKLRELLLWHSEEQRK 184 (482)
Q Consensus 107 ~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl~~~-a~~~~~~~~~~lL~~~~~~~~~ 184 (482)
+|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.++ ..|+||||+| +...++.+++++|++.|++.+.
T Consensus 76 ~ga~~n~~d~~g~tpLh~A~----~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~ 151 (229)
T 2vge_A 76 AGANVNSPDSHGWTPLHCAA----SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151 (229)
T ss_dssp TTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc
Confidence 99999999999999999999 8899999999999999999997 6999999655 1778899999999999988665
Q ss_pred Hh
Q 011578 185 RR 186 (482)
Q Consensus 185 ~~ 186 (482)
+.
T Consensus 152 ~~ 153 (229)
T 2vge_A 152 MN 153 (229)
T ss_dssp SG
T ss_pred cc
Confidence 54
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=185.53 Aligned_cols=128 Identities=30% Similarity=0.415 Sum_probs=119.1
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t 115 (169)
T 2y1l_E 42 AEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLK----NGADVNANDMEGHT 115 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCC
Confidence 456789999999999999999999995 46778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g 145 (482)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..|+.+++++|+++|
T Consensus 116 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI----DNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHTC-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HhCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999 889999999999876
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-24 Score=196.92 Aligned_cols=229 Identities=22% Similarity=0.307 Sum_probs=164.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.++..+++....+..+........ ..+.+++|+||||||||++++++++.+.. +++.++
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~ 81 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 81 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEee
Confidence 3578899999999999987665543333333333 34567999999999999999999997753 788898
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCC---c-EEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG---K-VVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~---~-~~vi~~~ 352 (482)
+.++...+.|.....+..+|+.+. ++++||||+|.+...++.. ..+...+.+++++..|+++ + +++++++
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEcc
Confidence 888877788887788888898764 4899999999998766431 2344567788999888763 3 3444444
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++++ ||+..++|+.|+.++|.+|++.+++.. .+..+++...++..+.
T Consensus 162 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~la~~~~--------- 218 (254)
T 1ixz_A 162 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTP--------- 218 (254)
T ss_dssp SCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCT---------
T ss_pred CCchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCcccCHHHHHHHcC---------
Confidence 33322 2899988 999999999999999999999887543 3334444443333222
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
...++++++++++|...+..+ ....|+.+||++|+
T Consensus 219 G~~~~dl~~~~~~a~~~a~~~---------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 219 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 253 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCCCcCHHHHHHHh
Confidence 345699999999998765322 12469999999886
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-26 Score=217.84 Aligned_cols=234 Identities=19% Similarity=0.306 Sum_probs=168.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+.+..+..+......+ ...+.+++|+||||||||++|+++|+.+.. +++.+++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 77 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-------PFFSMGG 77 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHS----CCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-------CCCCCCS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCC----CCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEech
Confidence 46789999999999999877666555444433 345678999999999999999999998865 7788888
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC----ChhHHHHHHHHHhhhcC-----CcEEEEEe
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG-----GKVVVIFA 351 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~----~~~~~~~~~~ll~~l~~-----~~~~vi~~ 351 (482)
+++...+.|.+...++.+|+.+. ++||||||+|.+..+++.++ +....++++.|+..+++ ..++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 157 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA 157 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEEC
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEe
Confidence 88888888888777777777654 49999999999988653211 11122456778888865 34677777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
++.... .+|++.+ ||+..+.|+.|+.++|.+|++.+++... +..+++.+.++.++
T Consensus 158 tn~~~~-----ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~la~~~--------- 214 (268)
T 2r62_A 158 TNRPEI-----LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDVNLQEVAKLT--------- 214 (268)
T ss_dssp BSCCTT-----SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSCCTTTTTSSS---------
T ss_pred cCCchh-----cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCccCHHHHHHHc---------
Confidence 654432 2788887 9999999999999999999999887542 22233333333322
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
....++++++++++|...+.. .....|+.+|+.+|++.+.|.
T Consensus 215 ~g~~g~dl~~l~~~a~~~a~~---------~~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 215 AGLAGADLANIINEAALLAGR---------NNQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp CSSCHHHHHHHHHHHHHTTSS---------SCCCSCCHHHHHTSCTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------hccCCcCHHHHHHHHHHHhhc
Confidence 234578999999998876521 122469999999988776553
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=176.63 Aligned_cols=107 Identities=27% Similarity=0.309 Sum_probs=72.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~- 81 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV- 81 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH----TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH-
T ss_pred cchHHHHHHHcCCHHHHHHHHH----cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH-
Confidence 5666777777777777766666 35566666666667777777766677777777666666666666677777666
Q ss_pred hccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..++.+++++|+++|++++.+|..|+||+|+|
T Consensus 82 ---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 82 ---YEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp ---HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred ---HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 55666677777666666666666677776443
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-25 Score=211.50 Aligned_cols=164 Identities=24% Similarity=0.287 Sum_probs=143.6
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCC-CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCc-ccccCcCCCChHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENP-SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV-ELEAQNMYGETPLH 90 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~-~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~g~tpLh 90 (482)
..+++|.|+..|+.+.++.++.... ..+|..+.. |+||||+||..|+.++|++|+++ ++ +++..|..|+||||
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~tpL~ 150 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSN-GNTALHYSVSHANFPVVQQLLDS----GVCKVDKQNRAGYSPIM 150 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTT-SCCHHHHHHHTTCHHHHHHHHHT----SCCCTTCCCTTSCCHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCC-CCCHHHHHHHCCCHHHHHHHHHC----CCCcCCCCCCCCCCHHH
Confidence 3567899999999999998875432 236777776 99999999999999999999994 55 89999999999999
Q ss_pred HHH-----HcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 91 MAA-----KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 91 ~A~-----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
+|+ ..++.+++++|++.|++++..|..|+||||+|+ ..|+.+++++|+++|+|+|.+|..|+||||+|+.
T Consensus 151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~----~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~- 225 (276)
T 4hbd_A 151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV----SHGRVDVVKALLACEADVNVQDDDGSTALMCACE- 225 (276)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-
T ss_pred HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH-
Confidence 999 678899999999999999999999999999999 8899999999999999999999999999965554
Q ss_pred CCChHHHHHHHh-hhHHHHHHh
Q 011578 166 PGSAKLRELLLW-HSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~-~~~~~~~~~ 186 (482)
.++.+++++|+. .|++.+.+.
T Consensus 226 ~g~~~iv~~Ll~~~gad~~~~d 247 (276)
T 4hbd_A 226 HGHKEIAGLLLAVPSCDISLTD 247 (276)
T ss_dssp HTCHHHHHHHHTSTTCCTTCCC
T ss_pred CCCHHHHHHHHhcCCCCCcCcC
Confidence 567888888888 787765443
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=194.22 Aligned_cols=137 Identities=30% Similarity=0.333 Sum_probs=125.1
Q ss_pred CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCC
Q 011578 39 LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG 118 (482)
Q Consensus 39 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 118 (482)
.+|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 27 ~~n~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 101 (192)
T 2rfm_A 27 LRNYRDSY-NRTPLMVACMLGMENAIDKLVE----NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101 (192)
T ss_dssp HHTCCCTT-CCCHHHHHHHHTCGGGHHHHHH----HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred HHhCcCCC-CCCHHHHHHHcCCHHHHHHHHH----hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence 35667765 9999999999999999999999 578899999999999999999999999999999999999999999
Q ss_pred CcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 119 ~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++...+
T Consensus 102 ~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~~ 163 (192)
T 2rfm_A 102 KTPLMWSI----IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK-YGRSEIVKKLLELGADISAR 163 (192)
T ss_dssp CCHHHHHH----HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH-HTCHHHHHHHHHTTCCTTCB
T ss_pred CcHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCCc
Confidence 99999999 7889999999999999999999999999955554 67888999999998876544
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-24 Score=196.14 Aligned_cols=137 Identities=23% Similarity=0.270 Sum_probs=102.2
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..|.||||+||..|+.+.|+.||. .+.+++..+.. |+||||+||..|+.++|++|+++ .+++++.+|..|+||||
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKA-GSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALH 145 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHH
T ss_pred cccccccccccccCcHHHHHHHHh-CCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHH
Confidence 356788999999999988888885 46677877775 88999999999999999998883 37888888888899999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK 156 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~ 156 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..++.++++.|++.|++.+..+..++
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT----NAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC----SHHHHHHHC-----------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc----chhHHHHHHHHhccchhhhccchhhh
Confidence 999999999999999889988888888999999888 77888888888888888877776553
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-24 Score=174.16 Aligned_cols=111 Identities=25% Similarity=0.280 Sum_probs=102.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
.+.+.||||+|+..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEG-GRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTT-SSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCC-CCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHH
Confidence 46788999999999999999999954 6678888876 9999999999999999999999 5788999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeeh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
|+|+..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 9999999999999999999999999999999999998
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-24 Score=204.83 Aligned_cols=139 Identities=20% Similarity=0.221 Sum_probs=117.7
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccC------CCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccccCc
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNE------RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~------~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
...++||.|+..|+.+.|+.+|. .+.+++. .+.. |+||||+|+.. |+.+++++|++ .|+++|.+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~~~~-g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadvn~~d 223 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAP-EELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKA 223 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSSCSC-EECHHHHHHHTCCTTTHHHHHHHHH----HSSCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCcccCCC-CccHHHHHHHhcccCcHHHHHHHHh----cCCCCCCCC
Confidence 45678999999999999999984 4566766 3544 99999999987 89999999999 578899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..++.+++++|+++|++ .|.||||+|
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~----~~~~~~iv~~Ll~~ga~------~g~tpLh~A 293 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR----KKHHKECEELLEQAQAG------TFAFPLHVD 293 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHH------TTSSCCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHhcCC------CCCChhHHH
Confidence 99999999999999999999999999999999999999999999 78899999999999876 578999666
Q ss_pred hcCC
Q 011578 163 SNGP 166 (482)
Q Consensus 163 a~~~ 166 (482)
+..+
T Consensus 294 ~~~g 297 (301)
T 2b0o_E 294 YSWV 297 (301)
T ss_dssp ----
T ss_pred HhcC
Confidence 6544
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-25 Score=214.96 Aligned_cols=165 Identities=21% Similarity=0.092 Sum_probs=135.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccC-CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
+.+|.|+..+..++++.|+ ..+.++|. .+.. |+||||+||..|+.++|++|++ .|++++.+|..|+||||+|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~-~~g~dvn~~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~ 172 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFP-NTQLNLNIPVDEH-GNTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAV 172 (327)
T ss_dssp -----CHHHHHHHHHHHCT-TSCCCSCSCCSTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHH-hcCCCcccccCCC-CCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH
Confidence 3457777776666666555 67888999 6765 9999999999999999999999 58899999999999999999
Q ss_pred HcCC---HHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCC-----------------------
Q 011578 94 KNGC---NEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA----------------------- 146 (482)
Q Consensus 94 ~~g~---~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ga----------------------- 146 (482)
..|+ .++++.|++++ ++++.+|..|+||||+|+..+...|+.+++++|++.++
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~ 252 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence 9998 78888888887 78999999999999999943323889999999998743
Q ss_pred ----------------------CccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 147 ----------------------DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 147 ----------------------d~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+++.+|..|+||||+|+. .++.+++++|+++|++++.+.
T Consensus 253 ~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp -------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH-HCCHHHHHHHHHTTCCTTCCC
T ss_pred cccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCcccC
Confidence 578889999999955554 678899999999999876554
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-24 Score=184.40 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=122.7
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+|+..|+.++++.|+.. +.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|.
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 103 (167)
T 3v31_A 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKG-RESALSLACSKGYTDIVKMLLD----CGVDVNEYDWNGG 103 (167)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSC
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHH----CCCCCCcCCCCCC
Confidence 34567899999999999999999999965 7778888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcc
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~ 149 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|++++++..
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV----ALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 8889999999999876643
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=199.48 Aligned_cols=255 Identities=19% Similarity=0.253 Sum_probs=173.2
Q ss_pred HHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC--CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 200 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK--VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 200 ~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
.+...+++ ++|++.+++.+...+.... .+...+.. -...++.++||+||||||||++|++||+.++.
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------- 77 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHY---KRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------- 77 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHH---HHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHH---hhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------
Confidence 34445554 6999999999988754332 22222211 11235678999999999999999999998854
Q ss_pred CeEEeeccccccc-ccccc-hhhHHHHHHhc-------CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcCC
Q 011578 277 RVTEVQRTDLVGE-FVGHT-GPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 277 ~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~~ 344 (482)
+|+.++++.+... |+|++ ...++++|..+ .++||||||+|.+.+.+.+.+ +.....+++.|++.|++.
T Consensus 78 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 78 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred CEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 8999999987754 88886 55667777554 568999999999998765432 223345889999999831
Q ss_pred -----------------------cEEEEEecCchhHHHHHh---------------------------------------
Q 011578 345 -----------------------KVVVIFAGYSEPMKRVIA--------------------------------------- 362 (482)
Q Consensus 345 -----------------------~~~vi~~~~~~~~~~~~~--------------------------------------- 362 (482)
.+++|++++...++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~ 237 (363)
T 3hws_A 158 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237 (363)
T ss_dssp ----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHH
T ss_pred eeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHc
Confidence 123344433322222111
Q ss_pred -cCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchh
Q 011578 363 -SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 437 (482)
Q Consensus 363 -~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 437 (482)
..|+|.+||+.++.|++|+.+++.+|+.. ++.+..+....+ .....++++++..++...+ ...+|+|.|
T Consensus 238 ~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~--~~~l~~~~~a~~~L~~~~~----~~~~gaR~L 311 (363)
T 3hws_A 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLE--GVDLEFRDEALDAIAKKAM----ARKTGARGL 311 (363)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT--TCEEEECHHHHHHHHHHHH----HTTCTTTTH
T ss_pred CCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CceEEECHHHHHHHHHhhc----CCccCchHH
Confidence 27899999999999999999999999987 444332211111 2334679999999997543 137889999
Q ss_pred HHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHH
Q 011578 438 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472 (482)
Q Consensus 438 ~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 472 (482)
++++++++.....++.... .-....|+.+++++
T Consensus 312 ~~~ie~~~~~~l~~~~~~~--~~~~~~I~~~~v~~ 344 (363)
T 3hws_A 312 RSIVEAALLDTMYDLPSME--DVEKVVIDESVIDG 344 (363)
T ss_dssp HHHHHHHHHHHHHSTTTCC--CSEEEECHHHHTTC
T ss_pred HHHHHHHHHHHHHhccccc--CCceeEEcHHHHhC
Confidence 9999999999877664321 01233566666654
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-23 Score=177.32 Aligned_cols=126 Identities=19% Similarity=0.280 Sum_probs=117.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+ |..|+.+.++.|++ .+.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 102 (156)
T 1bd8_A 30 DALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDTS-GTSPVHDAARTGFLDTLKVLVE----HGADVNVPDGTGA 102 (156)
T ss_dssp TCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSC
T ss_pred cccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCC
Confidence 3456789999999 99999999999995 47788888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ 144 (482)
||||+|+..|+.+++++|+++ ++++.+|.+|+||||+|+ ..|+.+++++|+++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~----~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 103 LPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELAL----QRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHH----HSCCHHHHHHHHTT
T ss_pred cHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHhh
Confidence 999999999999999999999 999999999999999999 88999999999874
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-24 Score=187.51 Aligned_cols=138 Identities=26% Similarity=0.260 Sum_probs=104.8
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL 89 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpL 89 (482)
..|.||||+||..|+.+.++.||. +.++|..+.. |+||||+|+..|+.+++++|++ .+++++.++ ..|+|||
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~g~tpL 114 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSSCCHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCCHH
Confidence 456788888888888888888885 6677777775 8888888888888888888888 567777777 7788888
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+|+..|+.+++++|+++|++++.+|.+|+||||+|+..+ ....+.+||++++ ..+..
T Consensus 115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~---------------------~~~~~~~~l~~a~-~~~~~ 172 (183)
T 3deo_A 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFGR-RIGLE 172 (183)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH---------------------HTCCCCSHHHHHH-HHHHH
T ss_pred HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc---------------------cCcccccHHHHHH-HcCHH
Confidence 8888888888888888888888888888888888887211 1134567884444 45666
Q ss_pred HHHHHHHh
Q 011578 170 KLRELLLW 177 (482)
Q Consensus 170 ~~~~lL~~ 177 (482)
+++++|..
T Consensus 173 ~i~~~L~~ 180 (183)
T 3deo_A 173 KVINVLEG 180 (183)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77777764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=193.69 Aligned_cols=229 Identities=22% Similarity=0.307 Sum_probs=163.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.+++.+......+..+........ ..+.+++|+||||||||++++++++.+.. +++.++
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~----~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~ 105 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 105 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEec
Confidence 4578999999999999987665544433333333 34567999999999999999999997753 788888
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCC---c-EEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG---K-VVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~---~-~~vi~~~ 352 (482)
+.++...+.|.....+..+|+.+. ++++||||+|.+...+... ..+...+.+++++..|+++ . +++++++
T Consensus 106 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEec
Confidence 888877778877777888888764 4899999999997765421 2344567788899888763 2 4444444
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++++ ||+..++|+.|+.++|.+|++.+++.. .+..+++...++..+.
T Consensus 186 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~la~~~~--------- 242 (278)
T 1iy2_A 186 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTP--------- 242 (278)
T ss_dssp SCTTS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCT---------
T ss_pred CCchh-----CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---------CCCcccCHHHHHHHcC---------
Confidence 43322 2888877 999999999999999999999887542 2334444443332221
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
...+++|++++++|...+..+ ....|+.+||.+|+
T Consensus 243 G~~~~dl~~l~~~a~~~a~~~---------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 243 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 277 (278)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCCSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHh
Confidence 334589999999998765322 12469999999886
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=191.22 Aligned_cols=259 Identities=17% Similarity=0.258 Sum_probs=174.8
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCC-CCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
.+...++ .++|++.+++.+...+... ..+....... ....+.+++|+||||||||++|+++|+.+.. +
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-------~ 77 (310)
T 1ofh_A 8 EIVSELDQHIIGQADAKRAVAIALRNR---WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (310)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHH---HHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------C
T ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHH---HhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence 3444555 4899999999998765431 0100000000 0125678999999999999999999998854 8
Q ss_pred eEEeecccccc-cccccc-hhhHHHHHHhc--------CCcEEEEecccccccCCCCCCChhH-HHHHHHHHhhhcCC--
Q 011578 278 VTEVQRTDLVG-EFVGHT-GPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGG-- 344 (482)
Q Consensus 278 ~~~~~~~~~~~-~~~g~~-~~~~~~~~~~a--------~~~vl~iDE~d~l~~~~~~~~~~~~-~~~~~~ll~~l~~~-- 344 (482)
++.++++.+.. .|+|.. ...+++++..+ .++||||||+|.+.+.......+.. ..+.+.|++.|++.
T Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 157 (310)
T 1ofh_A 78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV 157 (310)
T ss_dssp EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeE
Confidence 89999988766 577754 34466666543 3689999999999987654444433 34578888888864
Q ss_pred ----------cEEEEEecC---chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccc
Q 011578 345 ----------KVVVIFAGY---SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKL 407 (482)
Q Consensus 345 ----------~~~vi~~~~---~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~ 407 (482)
.+++|++++ .++ . ..+|++.+||+..++|++|+.+++.+|++. ++.+........ ..
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~-~---~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~--~~ 231 (310)
T 1ofh_A 158 STKHGMVKTDHILFIASGAFQVARP-S---DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE--GV 231 (310)
T ss_dssp EETTEEEECTTCEEEEEECCSSSCG-G---GSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHT--TC
T ss_pred ecccccccCCcEEEEEcCCcccCCc-c---cCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhc--CC
Confidence 567777752 222 1 238999999998899999999999999983 222111000001 12
Q ss_pred cCcccHHHHHHHHHHHhhH-hhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 408 HSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
...++++++..++...|.. .....+|.|.++++++.+......+... ..+....|+.+|+.++++.+
T Consensus 232 ~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 232 NIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD---MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG---CTTCEEEECHHHHHHHTCSS
T ss_pred eeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc---ccCCEEEEeeHHHHHHHHhh
Confidence 2467899999999988732 1122589999999999998775544331 11223369999999988754
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=194.96 Aligned_cols=140 Identities=26% Similarity=0.258 Sum_probs=116.4
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL 89 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpL 89 (482)
+.|.||||+||..|+.+.|+.||. +.++|..+.. |+||||+||..|+.++|++|++ .+++++.++ ..|+|||
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSCCCHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCcCCCCCCCCHH
Confidence 467899999999999999998886 6778888876 9999999999999999999998 578888888 7899999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..+ ....+.||||++ +..++.
T Consensus 116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---------------------~~~~~~~~l~~a-~~~g~~ 173 (244)
T 3ui2_A 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFG-RRIGLE 173 (244)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH---------------------TTCCCSSHHHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH---------------------hccCCCCHHHHH-HHcChH
Confidence 9999999999999999999999999999999999998211 224578999554 446677
Q ss_pred HHHHHHHhhh
Q 011578 170 KLRELLLWHS 179 (482)
Q Consensus 170 ~~~~lL~~~~ 179 (482)
+++++|..++
T Consensus 174 ~iv~~L~~~~ 183 (244)
T 3ui2_A 174 KVINVLEGQV 183 (244)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7888888654
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-24 Score=188.35 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=117.3
Q ss_pred CCCchHhHHHHHcCCHH----HHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc------HHHHHHHHcCCCCCCccccc
Q 011578 11 SAKPATIHGCAQSGDLL----AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~----~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~------~~~v~~Ll~~~~~~~~~~~~ 80 (482)
..|.||||+|+..|+.+ +++.|| +.|.++|..+.. |+||||+|+..|+ .+++++|++ .|+++|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~-g~TpLh~a~~~~~~~~~~~~~iv~~Ll~----~Gadin~ 109 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLE----KGADITA 109 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTT-CCCTHHHHHHHCTTCHHHHHHHHHHHHH----TTCCSSS
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCC-CCcHHHHHHHcCCcchhhHHHHHHHHHH----CCCCCCc
Confidence 46899999999999864 788777 568899999976 9999999999987 688999999 6899999
Q ss_pred CcCCCC-hHHHHHHHcC-----CHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 81 QNMYGE-TPLHMAAKNG-----CNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 81 ~~~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
+|..|+ ||||+|+..+ +.+++++|++ +|++++.+|..|+||||+|+ ..|+.+++++|.++..+.+.++
T Consensus 110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~----~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK----RCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH----TTTCHHHHHHHHHHHHHHTCCC
T ss_pred cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH----HcCCHHHHHHHHHHHHHHhccc
Confidence 999999 9999999954 4579999999 99999999999999999999 8899999999998776666655
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=192.85 Aligned_cols=258 Identities=17% Similarity=0.261 Sum_probs=178.2
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCC-CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
++...++ .++|++.+|+.+... +..+.++......+.. .++.++||+||||||||++|+++|+.++. +
T Consensus 8 ~i~~~Ld~~IvGqe~ak~~l~~a---v~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-------~ 77 (444)
T 1g41_A 8 EIVSELDQHIIGQADAKRAVAIA---LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (444)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHH---HHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH---HHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC-------C
Confidence 3445555 689999999999776 3344455555444433 25678999999999999999999998866 8
Q ss_pred eEEeecccccc-ccccc-chhhHHHHHH----------------------------------------------------
Q 011578 278 VTEVQRTDLVG-EFVGH-TGPKTRRRIK---------------------------------------------------- 303 (482)
Q Consensus 278 ~~~~~~~~~~~-~~~g~-~~~~~~~~~~---------------------------------------------------- 303 (482)
|+.++++.+.. .|+|+ .+..++++|.
T Consensus 78 ~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~ 157 (444)
T 1g41_A 78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQ 157 (444)
T ss_dssp EEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred ceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHH
Confidence 88999888777 48885 3444433332
Q ss_pred --------------------------------------------------------------------------------
Q 011578 304 -------------------------------------------------------------------------------- 303 (482)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (482)
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~ 237 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINP 237 (444)
T ss_dssp --------------------------------------------------------------------CCGGGSCSSCCH
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCH
Confidence
Q ss_pred ---------hc-CCcEEEEecccccccCCCCCCChhHH-HHHHHHHhhhcC------------CcEEEEEecC---chhH
Q 011578 304 ---------EA-EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGY---SEPM 357 (482)
Q Consensus 304 ---------~a-~~~vl~iDE~d~l~~~~~~~~~~~~~-~~~~~ll~~l~~------------~~~~vi~~~~---~~~~ 357 (482)
.+ ..+|||+||||+++.+..+...+.+. .+.+.||+.||+ ..+++|+++. .++.
T Consensus 238 ~~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 238 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh
Confidence 22 35799999999999764433445444 477889999986 3456777761 2232
Q ss_pred HHHHhcCccccCCCcceeeCCCCCHHHHHHHHH---HHHhccc-cccccccccccCcccHHHHHHHHHHHhh-Hhhcccc
Q 011578 358 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQT-EDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREM 432 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~---~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 432 (482)
+ ..|+|.+||+.++.|++++.++..+|+. .++-++. +..... .....++++++..+++.... ....+..
T Consensus 318 d----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~--~~~l~~~~~al~~i~~~a~~~~~~t~~~ 391 (444)
T 1g41_A 318 D----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE--GVNIAFTTDAVKKIAEAAFRVNEKTENI 391 (444)
T ss_dssp G----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT--TCEEEECHHHHHHHHHHHHHHHHHSCCC
T ss_pred h----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhccc--CceEEECHHHHHHHHHHHHHhccCCccC
Confidence 2 2699999999999999999999999993 2222211 111111 23456799999999987542 1233567
Q ss_pred CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 433 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
++|.++++++.+++..+.++.... .....||.+++.+.+..
T Consensus 392 GaR~L~~~ie~~~~~~~~~~~~~~---~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 392 GARRLHTVMERLMDKISFSASDMN---GQTVNIDAAYVADALGE 432 (444)
T ss_dssp GGGHHHHHHHHHHHHHHHHGGGCT---TCEEEECHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhhccccC---CCeEEEeHHHHHHhcCc
Confidence 899999999999999877765321 23457899888877653
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=191.97 Aligned_cols=132 Identities=19% Similarity=0.234 Sum_probs=110.8
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~ 126 (482)
|.||||+||..|+.+++++|++ .+++++.+|..|+||||+||..|+.+++++|+++ |++++.+|.+|+||||+|+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 7899999999999999999999 5788999999999999999999999999999999 9999999999999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
..|+.+++++|+++|++++.+|..|+||| +.|...+..++++.|...++........
T Consensus 149 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 149 ----WKGYADIVQLLLAKGARTDLRNIEKKLAF-DMATNAACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp ----HHTCHHHHHHHHHHTCCSCCCCTTSCCHH-HHCCSHHHHHHHC---------------
T ss_pred ----HcCCHHHHHHHHHcCCCCccccCCCCCHH-HHhcchhHHHHHHHHhccchhhhccchh
Confidence 78899999999999999999999999999 5555677888888888888876655543
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-23 Score=183.67 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=102.9
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~ 126 (482)
|.||||+|+..|+.+++++|++ +++++.+|..|+||||+|+..|+.+++++|+++|++++.+| .+|+||||+|+
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 8999999999999999999997 56889999999999999999999999999999999999998 89999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 119 ----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 119 ----GYVRPEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp ----HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred ----hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 8899999999999999999999999999976654
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=158.43 Aligned_cols=92 Identities=48% Similarity=0.671 Sum_probs=82.1
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~- 76 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA- 76 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred CCcHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH-
Confidence 8899999999999999999998 57888889999999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHhhCCCC
Q 011578 128 YSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad 147 (482)
..|+.+++++|+++|++
T Consensus 77 ---~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 ---RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ---HTTCHHHHHHHHHTTCC
T ss_pred ---HcCCHHHHHHHHHcCCC
Confidence 78889999999998875
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-23 Score=205.64 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=127.6
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCc--cCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCC-cccccCcCCCCh
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLL--NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGET 87 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~--~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~t 87 (482)
..+.||||.||..|+.++|+.|+..+.... +..+.. |.||||+||..|+.++|++|+++|++.. ++++..+ +|
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~-~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~T 165 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YH 165 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH-HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccC-CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CC
Confidence 345699999999999999999997654221 122333 8899999999999999999999532100 2333333 89
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccc--cccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEA--KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
|||+||..|+.++|++|+++|++++. .|..|+||||+|+. ..|+.++|++|+++|++ |.|||| .|+.
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~---~~G~~eiv~~Ll~~ga~-------~~taL~-~Aa~ 234 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV---GRGHHNVINFLLDCPVM-------LAYAEI-HEFE 234 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHTTSHHH-------HHHHHH-CTTT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH---HCCCHHHHHHHHhCCCc-------cchHHH-HHHH
Confidence 99999999999999999999999988 89999999999981 35789999999998753 899995 5555
Q ss_pred CCChHHHHHHHhhhHHHHHHh
Q 011578 166 PGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.++.+++++|.++|++...+.
T Consensus 235 ~g~~evv~lL~~~ga~~~~~~ 255 (376)
T 2aja_A 235 YGEKYVNPFIARHVNRLKEMH 255 (376)
T ss_dssp TTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCccccccc
Confidence 677789999999999876553
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-22 Score=188.33 Aligned_cols=160 Identities=15% Similarity=0.209 Sum_probs=117.0
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEE
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILF 311 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~ 311 (482)
+...|.++||+||||||||++|+++|+.++. +|+.++++++.++|+|+++..++++|+.+ .++|||
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3456789999999999999999999999965 89999999999999999999999999887 679999
Q ss_pred EecccccccCCCCCC--ChhHHHHHHHHHhhhcC---------------CcEEEEEecCchhHHHHHhcCccccC--CCc
Q 011578 312 VDEAYRLIPMQKADD--KDYGIEALEEIMSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCR--RVT 372 (482)
Q Consensus 312 iDE~d~l~~~~~~~~--~~~~~~~~~~ll~~l~~---------------~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~ 372 (482)
|||||++.+.+.+.+ ......+.+.|++.||+ ..++||+||+..... +|++++ ||+
T Consensus 105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~l-----d~al~R~~R~d 179 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTL-----YAPLIRDGRME 179 (293)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-------CHHHHHHHEE
T ss_pred EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccC-----CHHHhCCCCCc
Confidence 999999998654322 22345777888888862 356777776543322 788875 998
Q ss_pred ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh
Q 011578 373 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 425 (482)
Q Consensus 373 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (482)
..|.+ |+.+++.+|++.++.. ..++.+.++.++.++.+
T Consensus 180 ~~i~~--P~~~~r~~Il~~~~~~-------------~~~~~~~l~~~~~~~~~ 217 (293)
T 3t15_A 180 KFYWA--PTREDRIGVCTGIFRT-------------DNVPAEDVVKIVDNFPG 217 (293)
T ss_dssp EEEEC--CCHHHHHHHHHHHHGG-------------GCCCHHHHHHHHHHSCS
T ss_pred eeEeC--cCHHHHHHHHHHhccC-------------CCCCHHHHHHHhCCCCc
Confidence 88875 5999999999988764 24567888888887653
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-22 Score=197.66 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=152.5
Q ss_pred HHHhhhhchHHHH---HHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 203 NELSNIVGLHELK---IQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
..|++++|++.++ ..+...+.. ....+++|+||||||||++|++||+.+.. +|+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~-------~f~ 79 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------------GHLHSMILWGPPGTGKTTLAEVIARYANA-------DVE 79 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------------TCCCEEEEECSTTSSHHHHHHHHHHHTTC-------EEE
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------------CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------CeE
Confidence 4578899999998 555554321 23468999999999999999999998754 777
Q ss_pred EeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
.+++... +...++++|.. ..++||||||||.+....+ +.|+..++++.+++|++|
T Consensus 80 ~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q-----------~~LL~~le~~~v~lI~at 141 (447)
T 3pvs_A 80 RISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIEDGTITFIGAT 141 (447)
T ss_dssp EEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHTTSCEEEEEE
T ss_pred EEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-----------HHHHHHHhcCceEEEecC
Confidence 7775432 22334444443 3569999999999987666 789999999999999999
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHHHHHHHHHHhhHhhccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
+.++...+ ++++.+|+ .++.|++|+.+++..+++.++.+... ++ .....++++++..++.. + .
T Consensus 142 t~n~~~~l---~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~-----~~~~~~~~i~~~al~~L~~~-~------~ 205 (447)
T 3pvs_A 142 TENPSFEL---NSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTR-----GYGGQDIVLPDETRRAIAEL-V------N 205 (447)
T ss_dssp SSCGGGSS---CHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTT-----SSTTSSEECCHHHHHHHHHH-H------C
T ss_pred CCCccccc---CHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhh-----hhccccCcCCHHHHHHHHHH-C------C
Confidence 87776444 89999999 58889999999999999999987442 22 12345788999999987 4 7
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
||.|.+.++++.+....... ......||.+++.++++
T Consensus 206 Gd~R~lln~Le~a~~~a~~~-------~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 206 GDARRALNTLEMMADMAEVD-------DSGKRVLKPELLTEIAG 242 (447)
T ss_dssp SCHHHHHHHHHHHHHHSCBC-------TTSCEECCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcccc-------cCCCCccCHHHHHHHHh
Confidence 99999999999998764210 01224577777766654
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-22 Score=163.73 Aligned_cols=108 Identities=39% Similarity=0.491 Sum_probs=98.0
Q ss_pred CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcce
Q 011578 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122 (482)
Q Consensus 43 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL 122 (482)
.+.. |+||||+||..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 5 ~d~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKD-GNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSCS-SCCHHHHHHHHTCHHHHHHHTT----TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 3444 9999999999999999999999 5788999999999999999999999999999999999999999999999
Q ss_pred eeehhhccCCChHHHHHHHhhCCCCccccCCCCCChh
Q 011578 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (482)
Q Consensus 123 h~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 159 (482)
|+|+ ..++.+++++|+++|+++|.++..|.||-
T Consensus 80 ~~A~----~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAK----KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHH----TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHH----HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999 88999999999999999999999999885
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=189.59 Aligned_cols=257 Identities=16% Similarity=0.235 Sum_probs=161.4
Q ss_pred HHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCC-----------------CCCCCCCCceeEecCCCCchHHH
Q 011578 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL-----------------KVGARRPPHMAFLGNPGTGKTMV 259 (482)
Q Consensus 198 ~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ll~GppGtGKT~l 259 (482)
...+...+++ ++|++.+++.+...+.... .+...+. .-...+..+++|+||||||||++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~---~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHY---KRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHH---HHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHH
Confidence 3445556665 7999999999987653111 1111000 00123567899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEeeccccc-ccccccc-hhhHHHHHH-------hcCCcEEEEecccccccCCCCCC---C
Q 011578 260 ARILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADD---K 327 (482)
Q Consensus 260 a~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~---~ 327 (482)
|+++|+.++. +|+.++++.+. ..|+|+. ...+.+.+. .+.++||||||+|.+.+.+.... +
T Consensus 89 a~~la~~l~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~ 161 (376)
T 1um8_A 89 AQTLAKHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRD 161 (376)
T ss_dssp HHHHHHHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------
T ss_pred HHHHHHHhCC-------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecc
Confidence 9999998754 88989888765 4577765 344555554 34679999999999988643211 1
Q ss_pred hhHHHHHHHHHhhhcCCc-----------------------EEEEEecCchhHHHHH-----------------------
Q 011578 328 DYGIEALEEIMSVMDGGK-----------------------VVVIFAGYSEPMKRVI----------------------- 361 (482)
Q Consensus 328 ~~~~~~~~~ll~~l~~~~-----------------------~~vi~~~~~~~~~~~~----------------------- 361 (482)
.....+.+.|++.|+++. +++|++++...++..+
T Consensus 162 ~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~ 241 (376)
T 1um8_A 162 VSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEA 241 (376)
T ss_dssp --CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTT
T ss_pred cchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhH
Confidence 111247788888888542 3566665432222211
Q ss_pred -------------hcCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 362 -------------ASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 362 -------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
...|+|.+||+.++.|++++.+++.+|+.. ++.+........+ ....++++++..++...|
T Consensus 242 ~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 242 ILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE--VDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp SGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT--CEEEECHHHHHHHHHHHH
T ss_pred HHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcC--ceEEECHHHHHHHHHHhc
Confidence 136889999999999999999999999973 3332211100012 234578999999999876
Q ss_pred hHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHH
Q 011578 425 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 473 (482)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a 473 (482)
. ..+|+|.+++++++++.....+.... ......||.+++.++
T Consensus 320 ~----~~~~~R~L~~~le~~~~~~~~~~~~~---~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 320 E----RKTGARGLRAIIEDFCLDIMFDLPKL---KGSEVRITKDCVLKQ 361 (376)
T ss_dssp H----TTCTGGGHHHHHHHHHHHHHHTGGGG---TTSEEEECHHHHTTS
T ss_pred c----cccCcHHHHHHHHHHHHHHHhhccCC---CCCEEEEeHHHhcCC
Confidence 1 24899999999999999876665421 122346888887654
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=187.86 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=155.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+..++.+..++..... ...++.+++|+||||||||++|+++|+.++. +|+.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-------~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-----------RNECLDHILFSGPAGLGKTTLANIISYEMSA-------NIKTTAA 88 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEEG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEecc
Confidence 578899999999999987654421 1235678999999999999999999998754 7888887
Q ss_pred ccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-----------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------------- 345 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------- 345 (482)
+.+. ....+...+.. +.++|||||||+.+.+ ...+.|+..|+++.
T Consensus 89 ~~~~------~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 89 PMIE------KSGDLAAILTNLSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp GGCC------SHHHHHHHHHTCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred hhcc------chhHHHHHHHhccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence 6542 22345555554 6779999999999976 34477787777643
Q ss_pred ---EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 346 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 346 ---~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
+++|++|+.... .+|++++||+..+.|++|+.+++..+++.++.+.. ..++++++..++.
T Consensus 152 ~~~~~~i~atn~~~~-----l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~l~~- 214 (338)
T 3pfi_A 152 LPKFTLIGATTRAGM-----LSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-----------KTCEEKAALEIAK- 214 (338)
T ss_dssp CCCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHH-
T ss_pred CCCeEEEEeCCCccc-----cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH-
Confidence 678888766544 28899999999999999999999999999887542 3467888888887
Q ss_pred HhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 423 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
.| +||.|.+.++++.+...+... ....|+.+++..++..
T Consensus 215 ~~------~G~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 215 RS------RSTPRIALRLLKRVRDFADVN---------DEEIITEKRANEALNS 253 (338)
T ss_dssp TT------TTCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHH
T ss_pred HH------CcCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHH
Confidence 44 789999999999887654211 1234666666666654
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-22 Score=194.04 Aligned_cols=139 Identities=23% Similarity=0.249 Sum_probs=88.2
Q ss_pred CchHhHHHHHc-CCHHHHHHHHhhCCCCccCCCC-CCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 13 KPATIHGCAQS-GDLLAFQRLLRENPSLLNERNP-VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 13 ~~t~l~~a~~~-g~~~~v~~ll~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
+.|+||.|+.. |+++.|+.||. .+.++|..+. ..|+||||+|+..|+.++|++|++ .++++|.+|..|+||||
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~----~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ----NGANVNQADSAGRGPLH 273 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 34577777777 77777777774 4556666651 237777777777777777777777 46667777777777777
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC---CCccccCCCCCChhh
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN---ADCSAKDNEGKTPLD 160 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g---ad~~~~d~~g~tpl~ 160 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..++.+++++|++.+ ++....+..+.|+++
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~----~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM----ETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHC-----------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCcccccccCCCCCCHHH
Confidence 777777777777777777777777777777777777 666777777777554 333344455666663
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=185.25 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=86.9
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCC-----ccCCCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSL-----LNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~-----~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
++|+.|+..|+.+.+..++..+... ++..+.. |+||||+|+.. |+.+++++|++ .|+++|.+|..|+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~-g~t~Lh~A~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g~ 206 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEP-DETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSST-TCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCC
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccC-CCCcchHHHHhcccchHHHHHHHHH----CCCCccccCCCCC
Confidence 5677777777777777776543322 2222443 77777777777 67777777777 4666777777777
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|++
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK----RLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHH----HcCCHHHHHHHHHcCCC
Confidence 7777777777777777777777777777777777777777 66777777777777664
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-22 Score=184.04 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=117.5
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.++++.++..|+.+.+..+. ..+.+++ . .|.||||+||..|+.+++++|++ +++++.+|..|+||||
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~---~-~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~ 82 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSS-YIAADVV---S-EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALL 82 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGG-GSCHHHH---H-HHHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHH
T ss_pred CCCccHHHHHHHcCCCccccccc-ccccccc---c-CCCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHH
Confidence 34556666666666655543322 2222222 2 28999999999999999999997 5688999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
+||..|+.+++++|+++|++++.+| ..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 83 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 83 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA----GYVRPEVVEALVELGADIEVEDERGLTALELARE 153 (244)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 9999999999999999999999998 88999999999 8899999999999999999999999999977763
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=200.53 Aligned_cols=231 Identities=17% Similarity=0.213 Sum_probs=156.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
.++++|++.+++.+.+..... ...... +..+++|+||||||||++|+++|+.+.. ++..++++
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~-------~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l~~-------~~~~i~~~ 142 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQ-------KLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSLGR-------KFVRISLG 142 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHH-------HHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHHTC-------EEEEECCC
T ss_pred HHHhccHHHHHHHHHHHHHHH-------HhcccC---CCCEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEec
Confidence 356899999999987653211 111111 4668999999999999999999998864 66777665
Q ss_pred cccc---------cccccchhhHHHHHHhc--CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----------
Q 011578 285 DLVG---------EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---------- 343 (482)
Q Consensus 285 ~~~~---------~~~g~~~~~~~~~~~~a--~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---------- 343 (482)
.+.. .|+|.....+.+.|..+ .++||||||+|.+.+.++. ...+.|++.|+.
T Consensus 143 ~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 143 GVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp C--------------------CHHHHHHTTCSSSEEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSS
T ss_pred ccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeeccc
Confidence 4322 57888888888888877 5689999999999986542 244778888864
Q ss_pred -------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHH
Q 011578 344 -------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDA 415 (482)
Q Consensus 344 -------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~ 415 (482)
..+++|+|++... . .+|+|++|| .+|+|+.|+.+++.+|++.++.+... ...++ .....+++++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~--~---l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~--~~~~~~~~~i~i~~~~ 287 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLA--T---IPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQI--KEHGLKKSNLQLRDQA 287 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTT--T---SCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHH--HHTTCCGGGCEECHHH
T ss_pred CCeeecccceEEEeccCccc--c---CCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHH--HHcCCCcccccCCHHH
Confidence 3457777755433 2 289999999 58999999999999999988743211 01122 1234678999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
+..++..+. .++|.|.+++.++.+++.+..++..+. .....|+.+|+.+++.
T Consensus 288 l~~l~~~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~~~---~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 288 ILDIIRYYT-----REAGVRSLERQLAAICRKAAKAIVAEE---RKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTTC---CSCCEECTTTTHHHHC
T ss_pred HHHHHHhCC-----hhhchhHHHHHHHHHHHHHHHHHHhcC---CcceecCHHHHHHHhC
Confidence 999988664 268999999999999998877655321 2335688888888774
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=180.44 Aligned_cols=167 Identities=16% Similarity=0.097 Sum_probs=132.8
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCC-----ccCCC--------------------C-----CCCChHHHHHHhC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSL-----LNERN--------------------P-----VMAQTPLHVSAGY 58 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~-----~~~~~--------------------~-----~~g~tpLh~A~~~ 58 (482)
.+..+.++++.+...|+...... ++..-.. ++..+ . ....++||.|+..
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i-~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEI-MECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHH-HTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHH-HHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 45567889999999998766543 4321110 00000 0 0024689999999
Q ss_pred CcHHHHHHHHcCCCCCCcc--cccCcCCCChHHHHHHHc---CCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCC
Q 011578 59 NKAEIVKSLLEWPGNDKVE--LEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE 133 (482)
Q Consensus 59 g~~~~v~~Ll~~~~~~~~~--~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~ 133 (482)
|+.+.+..++..|.+.... ++..|..|+||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|+ ..|
T Consensus 141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~----~~g 216 (278)
T 1dcq_A 141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC----LTD 216 (278)
T ss_dssp TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH----HTT
T ss_pred cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHH----HcC
Confidence 9999999999954332111 556688999999999999 8999999999999999999999999999999 889
Q ss_pred hHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 134 DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 134 ~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
+.+++++|+++|+|++.+|..|+||||+|+ ..++.+++++|+++|++
T Consensus 217 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~-~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 217 NAECLKLLLRGKASIEIANESGETPLDIAK-RLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCCccCCCCCHHHHHH-HcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999995555 56788999999988874
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=185.16 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=151.9
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
|++++|++..++.+..+...+. .+..++.++||+||||||||++|+++|+.+.. ..+++.+++.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~-----------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~~~~~~~ 106 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIR-----------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-----DTPFTAIAGS 106 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-----SCCEEEEEGG
T ss_pred hhhccChHHHHHHHHHHHHHHH-----------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----cCCcccccch
Confidence 6789999999998876654442 12224568999999999999999999998853 2366666655
Q ss_pred cccccc-------------------------------------------------cccchhhHHHHHHhcC---------
Q 011578 285 DLVGEF-------------------------------------------------VGHTGPKTRRRIKEAE--------- 306 (482)
Q Consensus 285 ~~~~~~-------------------------------------------------~g~~~~~~~~~~~~a~--------- 306 (482)
.+...+ .|+....+++.|..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 433222 2222344455543321
Q ss_pred ---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--cEEEEEec---------CchhHHHHHhcCccccCCCc
Q 011578 307 ---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAG---------YSEPMKRVIASNEGFCRRVT 372 (482)
Q Consensus 307 ---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~vi~~~---------~~~~~~~~~~~~~~l~~R~~ 372 (482)
++||||||+|.+.+ .+.+.|+..++.. .+++++++ +.++... .+|++++||.
T Consensus 187 ~~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~---l~~~l~sR~~ 252 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHG---IPIDLLDRLL 252 (368)
T ss_dssp --CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETT---CCHHHHTTEE
T ss_pred cccCceEEEhhccccCh-----------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCccc---CCHHHHhhcc
Confidence 36999999999976 4558888888763 34444443 1122222 2788999995
Q ss_pred ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 373 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 373 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
. +.|++|+.+++.+|++..+.... ..++++++..++...+ +|+.|.+.++++.|...+..+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~-----------~~~~~~~l~~l~~~~~------~G~~r~~~~ll~~a~~~A~~~- 313 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEED-----------VEMSEDAYTVLTRIGL------ETSLRYAIQLITAASLVCRKR- 313 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHT-
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHh-
Confidence 5 89999999999999999887642 3578889999988775 489999999999988775222
Q ss_pred cCCCCChhhhhcccHHHHHHHHHH
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
....|+.+|+.++++.
T Consensus 314 --------~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 314 --------KGTEVQVDDIKRVYSL 329 (368)
T ss_dssp --------TCSSBCHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHH
Confidence 2357999999998876
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=181.18 Aligned_cols=218 Identities=17% Similarity=0.263 Sum_probs=156.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
++++|++.+++.+...+.... .+......+..+++|+||||||||++|+++|+.+... ..+++.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~-------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~----~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH-------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----GGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHh-------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----CcceEEeeccc
Confidence 357899999998887754331 2222222334579999999999999999999988642 23688888775
Q ss_pred ccc-----ccc-------ccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--------
Q 011578 286 LVG-----EFV-------GHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 344 (482)
Q Consensus 286 ~~~-----~~~-------g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------- 344 (482)
+.. .++ |... ..+.+.+..+.++||||||+|.+.+ .+.+.|++.|+++
T Consensus 86 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~ 154 (311)
T 4fcw_A 86 YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGR 154 (311)
T ss_dssp CCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSC
T ss_pred ccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCC
Confidence 432 223 3222 4566777778889999999999976 4558888888753
Q ss_pred -----cEEEEEecCch---------------hHHHHH------hcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccc
Q 011578 345 -----KVVVIFAGYSE---------------PMKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTE 398 (482)
Q Consensus 345 -----~~~vi~~~~~~---------------~~~~~~------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~ 398 (482)
.+++|++++.. .+...+ ..+|+|.+||+..+.|++|+.+++..|++.++.+...
T Consensus 155 ~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 45577776652 111111 2378999999999999999999999999999887643
Q ss_pred ccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 399 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
..... .....++++++..+....| ..++|+|++++++++++.....+
T Consensus 235 ~~~~~--~~~~~~~~~~~~~l~~~~~----~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 235 RLAEK--RISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HHHTT--TCEEEECHHHHHHHHHHSC----BTTTBTTTHHHHHHHHTHHHHHH
T ss_pred HHHhC--CcEEEeCHHHHHHHHHhCC----CccCCchhHHHHHHHHHHHHHHH
Confidence 21111 2245789999999998765 23689999999999998865544
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=189.62 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+..++..+. .+..++.++||+||||||||++|+++|+.++. ..+|+.+++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~-----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~-----~~~~~~~~~ 98 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIK-----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGS-----KVPFCPMVG 98 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-----TSCEEEEEG
T ss_pred chhhccCHHHHHHHHHHHHHHHH-----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-----CceEEEEeH
Confidence 46889999999999988765442 12345678999999999999999999999863 238999999
Q ss_pred ccccccccccchhhHHHHHHhc------CCcEEEEecccccccCCC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a------~~~vl~iDE~d~l~~~~~ 323 (482)
+++.++++|+++. +++.|+.+ .++||||||+|.+.+++.
T Consensus 99 ~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 99 SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 9999999999987 89999887 359999999999986553
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-21 Score=180.66 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=114.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCccccc------CcCCCChHHHHHHHc---CCHHHHHHHHhCCCCccccccCC
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA------QNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNG 118 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~------~~~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g 118 (482)
+.++||+|+..|+.+.++.|++ .+++++. .+..|+||||+|+.. |+.+++++|+++|+++|.+|.+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G 226 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 226 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred hHHHHhhhhhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence 4467999999999999999998 5677777 689999999999997 89999999999999999999999
Q ss_pred CcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 119 ~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
+||||+|+ ..|+.+++++|+++|+|++.+|..|+||||+|+ ..++.+++++|+++|++
T Consensus 227 ~TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~-~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 227 NTALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETALDIAR-KKHHKECEELLEQAQAG 284 (301)
T ss_dssp CCHHHHHH----HTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHhcCC
Confidence 99999999 889999999999999999999999999995554 56788999999998886
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=144.83 Aligned_cols=93 Identities=38% Similarity=0.567 Sum_probs=85.8
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
.|.||||+||..|+.+.++.|+. .+.++|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~-g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHH
Confidence 47899999999999999999985 57788999886 9999999999999999999999 588899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCC
Q 011578 92 AAKNGCNEAAKLLLAHGAF 110 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~ 110 (482)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999985
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-21 Score=185.34 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=114.2
Q ss_pred CChHHHHHHhC-CcHHHHHHHHcCCCCCCcccccCc--CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceee
Q 011578 48 AQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 124 (482)
Q Consensus 48 g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~ 124 (482)
+.||||+|+.. |+.+++++|++ .|++++..+ ..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 56899999999 99999999999 578888888 899999999999999999999999999999999999999999
Q ss_pred ehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhH
Q 011578 125 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 125 A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
|+ ..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+..+.
T Consensus 275 A~----~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~-~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 275 AT----ILGHTGLACLFLKRGADLGARDSEGRDPLTIAM-ETANADIVTLLRLAKM 325 (368)
T ss_dssp HH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHHC
T ss_pred HH----HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH-HCCCHHHHHHHHHcCC
Confidence 99 788999999999999999999999999995554 5678888889887764
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=152.64 Aligned_cols=109 Identities=33% Similarity=0.439 Sum_probs=98.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
-.+..|.||||+||..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t 77 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLA----KGADVNARSKDGNT 77 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCSS-SCCTTHHHHTTTCHHHHHHHTT----TTCCTTCCCTTCCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCC
Confidence 356789999999999999999999885 46778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcce
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL 122 (482)
|||+|+..|+.+++++|+++|+++|.++..|.||-
T Consensus 78 pl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 78 PEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999999999884
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=174.74 Aligned_cols=186 Identities=19% Similarity=0.247 Sum_probs=139.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+..++.+..++...... ...+.+++|+||||||||++|+++++.++. +++.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~-----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR-----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG 71 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH-----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 4678999999999888875543210 124578999999999999999999998864 7777776
Q ss_pred ccccccccccchhhHHHHHHh--cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------------- 344 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----------------- 344 (482)
+.+.. ...+...|.. +.+++|||||++.+.+..+ +.|+..++..
T Consensus 72 ~~~~~------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~-----------~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 72 PAIEK------PGDLAAILANSLEEGDILFIDEIHRLSRQAE-----------EHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp TTCCS------HHHHHHHHTTTCCTTCEEEETTTTSCCHHHH-----------HHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred cccCC------hHHHHHHHHHhccCCCEEEEECCcccccchH-----------HHHHHHHHhhhhHHhcccccccccccc
Confidence 65422 2345556665 5679999999999976333 5566666542
Q ss_pred ---cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
.+++|++|+.... .++++.+||+.++.|++|+.+++..+++.++.+.. ..++++++..+..
T Consensus 135 ~~~~~~~i~~t~~~~~-----~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-----------~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGL-----ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIGR 198 (324)
T ss_dssp ECCCCEEEEEESCCSS-----CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCccc-----CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH
Confidence 3567777665432 27889999988999999999999999999887542 3467888888887
Q ss_pred HHhhHhhccccCcchhHHHHHHHHHH
Q 011578 422 KETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.. .|+.|.+.++++.+...
T Consensus 199 ~~-------~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 199 RS-------RGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp HS-------CSCHHHHHHHHHHHTTT
T ss_pred Hc-------cCCHHHHHHHHHHHHHH
Confidence 63 68889999998887554
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=194.12 Aligned_cols=217 Identities=17% Similarity=0.286 Sum_probs=156.4
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|++..++.+.+.+.... .+...+..+..++||+||||||||++|+++|+.+.. ...+|+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~----~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG----DEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS----CTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC----CCcceEEEechh
Confidence 458899998888887654332 222222223337999999999999999999998853 234899999999
Q ss_pred ccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEec
Q 011578 286 LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAG 352 (482)
Q Consensus 286 ~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~ 352 (482)
+...+... ...+.+.+....++||||||||.+.+ .+.+.|++.|+++. +++|+||
T Consensus 560 ~~~~~~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 560 YMEKHSTS-GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp GCSSCCCC----CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cccccccc-cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 88776655 44556677788889999999999977 56688999998643 4777776
Q ss_pred Cc-----hhHHHHH--hcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh
Q 011578 353 YS-----EPMKRVI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 425 (482)
Q Consensus 353 ~~-----~~~~~~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (482)
+. +.....+ ...|+|++||+.+|.|++|+.+++.+|++.++.+..++.... .....++++++..++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~- 704 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ--DLSIELTDAAKAKVAEEGV- 704 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTT--TCEEEECHHHHHHHHGGGC-
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhC--CCeEEECHHHHHHHHHhCC-
Confidence 62 1111111 137999999999999999999999999999988765432211 2345689999999987422
Q ss_pred HhhccccCcchhHHHHHHHHHHhhhh
Q 011578 426 EKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 426 ~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
..++|+|.+++++++++.....+
T Consensus 705 ---~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 705 ---DLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp ---CTTTTTTTHHHHHHHHTHHHHHH
T ss_pred ---CCCCCChHHHHHHHHHHHHHHHH
Confidence 23799999999999988876544
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=193.47 Aligned_cols=210 Identities=17% Similarity=0.227 Sum_probs=153.6
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.++|++.+++.+...+.. ...+......+..++||+||||||||++|+++|+.++. +++.++++++
T Consensus 459 ~v~g~~~~~~~l~~~i~~-------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-------~~~~i~~s~~ 524 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM-------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLRFDMSEY 524 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH-------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------EEEEEEGGGC
T ss_pred hccCHHHHHHHHHHHHHH-------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-------CEEEEechhh
Confidence 478898888887765432 22333333334457999999999999999999998853 7888888765
Q ss_pred ccc------------ccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc--------
Q 011578 287 VGE------------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------- 345 (482)
Q Consensus 287 ~~~------------~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------- 345 (482)
... |+|.. ...+.+.++.+.++||||||||++.+ ++++.|++.|+++.
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTTEE
T ss_pred cchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEEcCCCCE
Confidence 432 44432 23456778888899999999999976 67799999998643
Q ss_pred -----EEEEEecCchhH-------------------HHH-HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 346 -----VVVIFAGYSEPM-------------------KRV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 346 -----~~vi~~~~~~~~-------------------~~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+++|+|++.... ..+ -...|+|++||+.+|.|++|+.+++..|++.++.+...+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457777664210 000 0237999999999999999999999999999998654322
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccC--cchhHHHHHHHHHHhh
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMN--GGLVDPMLVNARENLD 449 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~~~a~~~~~ 449 (482)
... .+...++++++..++...| +++ +|.+++++++++....
T Consensus 674 ~~~--~~~~~~~~~a~~~l~~~~~------~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 674 DQK--GVSLEVSQEARNWLAEKGY------DRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HHT--TEEEEECHHHHHHHHHHHC------BTTTBTTTHHHHHHHHHTHHH
T ss_pred HHC--CcEEEeCHHHHHHHHHhCC------CcCCCchHHHHHHHHHHHHHH
Confidence 111 1234678999999999877 444 8999999999988643
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-21 Score=185.94 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=120.9
Q ss_pred chHhHHHHH-cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 14 PATIHGCAQ-SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 14 ~t~l~~a~~-~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
.+.++.|+. .++.+.++.++.++. .+.||||+||..|+.++|++|+++++. ....+..+..|.||||+|
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~-~~~~~~~~~~~~tpL~~A 135 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGI---------KSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLA 135 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCHHHHHHHHHcCCc-HHHHHHhccCCCCHHHHH
Confidence 346666665 467777777775432 167999999999999999999996431 112234455688999999
Q ss_pred HHcCCHHHHHHHHhCCCC---ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccc--cCCCCCChhhhhhcCCC
Q 011578 93 AKNGCNEAAKLLLAHGAF---IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA--KDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~--~d~~g~tpl~~~a~~~~ 167 (482)
|..|+.++|++|+++|++ ++..+.+ +||||+|+ ..|+.++|++|+++|++++. +|..|+||||+||...+
T Consensus 136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa----~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G 210 (376)
T 2aja_A 136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA----ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210 (376)
T ss_dssp HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH----HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH----HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC
Confidence 999999999999999986 3333334 99999999 89999999999999999988 89999999966553788
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
+.+++++|+++|+.
T Consensus 211 ~~eiv~~Ll~~ga~ 224 (376)
T 2aja_A 211 HHNVINFLLDCPVM 224 (376)
T ss_dssp CHHHHHHHTTSHHH
T ss_pred CHHHHHHHHhCCCc
Confidence 99999999998764
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=170.07 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=141.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.....+.+.+... .....+++|+||||||||++|+++++.+. ....+|+.++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~GtGKt~la~~i~~~~~----~~~~~~~~v~ 64 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL--------------APLDKPVLIIGERGTGKELIASRLHYLSS----RWQGPFISLN 64 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTSCHHHHHHHHHHTST----TTTSCEEEEE
T ss_pred cccccceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhcC----ccCCCeEEEe
Confidence 36788999988888777665433 12457899999999999999999998553 2235899999
Q ss_pred ccccccc-----ccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------
Q 011578 283 RTDLVGE-----FVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 344 (482)
Q Consensus 283 ~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------ 344 (482)
++.+... .+|.... .....|..+.+++|||||++.+.+. +...|++.|+.+
T Consensus 65 ~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g 133 (265)
T 2bjv_A 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVG 133 (265)
T ss_dssp GGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCC
T ss_pred cCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCC
Confidence 8875322 2332111 1123566778899999999999873 336777777643
Q ss_pred -------cEEEEEecCchhHHHHH--hcCccccCCCc-ceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCccc
Q 011578 345 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCS 412 (482)
Q Consensus 345 -------~~~vi~~~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 412 (482)
.+.+|++++.+....+- ...+.|.+||. ..+.+|+++. +++..+++.++++.... ++......++
T Consensus 134 ~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~---~~~~~~~~~~ 210 (265)
T 2bjv_A 134 GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE---IKLPLFPGFT 210 (265)
T ss_dssp C--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCSSCCCBC
T ss_pred CcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH---hCCCcccCcC
Confidence 46788887765433221 12578888994 5788898885 78888888888765421 1222213689
Q ss_pred HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 413 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++++..+....| ++|.|+++++++.+....
T Consensus 211 ~~a~~~L~~~~~------~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 211 ERARETLLNYRW------PGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHHHHSCC------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC------CCCHHHHHHHHHHHHHhC
Confidence 999999988777 899999999999988654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=189.09 Aligned_cols=219 Identities=17% Similarity=0.274 Sum_probs=156.3
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
++.++|++..++.+...+.... .+......+..+++|+||||||||++|++||+.+... ..+|+.++++
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~-------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~----~~~~i~i~~~ 625 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMIRIDMT 625 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHG-------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS----GGGEEEECTT
T ss_pred hcccCCcHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CCcEEEEech
Confidence 3568899988888877654321 2222222234589999999999999999999988531 2378888887
Q ss_pred ccccc------------ccccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 285 DLVGE------------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 285 ~~~~~------------~~g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
.+... |+|... ..+.+.+....++||||||++.+.+ .+++.|++.|+++
T Consensus 626 ~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 626 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp TCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSS
T ss_pred hccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH-----------HHHHHHHHHhccCceECCCC
Confidence 65432 445543 5567777778889999999999876 6679999999875
Q ss_pred ------cEEEEEecCchh---------------HHHHH------hcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 345 ------KVVVIFAGYSEP---------------MKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 345 ------~~~vi~~~~~~~---------------~~~~~------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.++||+|++... +...+ .-.|+|.+||+.++.|++|+.+++..|++.++.+..
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 456777766411 11111 125889999999999999999999999999998765
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
.+.... .....++++++..++.+.| ..++|+|.+++++++++.....+
T Consensus 775 ~~~~~~--~~~~~~~~~a~~~L~~~~~----~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 775 ARLAEK--RISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHHTT--TCEEEECHHHHHHHHHHHC----BTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHHhC--CceEEECHHHHHHHHHcCC----CCCCChHHHHHHHHHHHHHHHHH
Confidence 422111 1235689999999999876 23689999999999988776544
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=173.48 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=146.7
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++|.+...+.+.+.+..+ .....+++|+||||||||++|+++++.+. ....+|+.++++.+
T Consensus 3 ~iig~s~~~~~~~~~~~~~--------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~----~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV--------------APSDATVLIHGDSGTGKELVARALHACSA----RSDRPLVTLNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH--------------CSTTSCEEEESCTTSCHHHHHHHHHHHSS----CSSSCCCEEECSSC
T ss_pred CcEECCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCchHHHHHHHHHHhCc----ccCCCeEEEeCCCC
Confidence 4778887777777665443 23567899999999999999999998543 23458899998775
Q ss_pred cc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------
Q 011578 287 VG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 345 (482)
Q Consensus 287 ~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 345 (482)
.. .++|+.. ......|+.+.+++||||||+.+... ....|+..++.+.
T Consensus 65 ~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 65 NESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp CHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCCC
T ss_pred ChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCccc
Confidence 43 2344311 12335678888999999999999873 3377788777643
Q ss_pred ----EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 346 ----VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 346 ----~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
+.+|++|+.+....+.. -++.|.+|| ...|.+|++. .+++..+++.++.+.... ++. ....++++++
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~---~~~-~~~~~s~~a~ 209 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAER---NRK-VVKGFTPQAM 209 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHH---TTC-CCCCBCHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHH---hcc-CccCCCHHHH
Confidence 77888877664332211 256778888 4558889988 688999999888765421 111 2246899999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+..+.| +||.|+++++++++....
T Consensus 210 ~~L~~~~w------pGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 210 DLLIHYDW------PGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHHCCC------SSHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCC------CCCHHHHHHHHHHHHHhC
Confidence 99999888 999999999999998764
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-18 Score=158.66 Aligned_cols=242 Identities=8% Similarity=-0.010 Sum_probs=155.2
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCeEEeecc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTEVQRT 284 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~~~~~~~ 284 (482)
+.+.++..+.+...+... +....+.+++++||||||||++++.+++++...... ....++.+++.
T Consensus 22 L~~Re~E~~~i~~~L~~~------------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS------------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHHH------------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 556666666666554333 123477899999999999999999999999753211 12357788876
Q ss_pred cccc----------cccc------cchhhHHHHHHhc-----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh--
Q 011578 285 DLVG----------EFVG------HTGPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-- 341 (482)
Q Consensus 285 ~~~~----------~~~g------~~~~~~~~~~~~a-----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l-- 341 (482)
.+.+ ++.| ++...+.+.|... ...||||||+|.|. .| +++..|+++.
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~ 159 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS 159 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc
Confidence 5432 2223 3455677788753 23799999999998 34 5666666543
Q ss_pred cCCcEEEEEecCch-hHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhccccccc-----c------------
Q 011578 342 DGGKVVVIFAGYSE-PMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSL-----L------------ 402 (482)
Q Consensus 342 ~~~~~~vi~~~~~~-~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~-----~------------ 402 (482)
+.+++++|+.++.- -.... .++++++||. .+|.|++|+.+|+.+|++..++......+ .
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~--L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~ 237 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQ--INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREG 237 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHH--HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC---
T ss_pred cCCcEEEEEEecCcccchhh--cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 44677777765432 22222 1678889995 68999999999999999999987532100 0
Q ss_pred ------ccc-cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 403 ------YGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 403 ------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.++ +....++++++...++... ...|+.|..-+++++|...+-..........+....||.+.+..++.
T Consensus 238 ~~~~~~~~~~~~~~~i~~~ai~~~A~~vA----~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~ 313 (318)
T 3te6_A 238 QNQKIPDNVIVINHKINNKITQLIAKNVA----NVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFS 313 (318)
T ss_dssp -----CTTEEEECEECCHHHHHHHHHHHH----HHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHH
T ss_pred ccccccccccccccccCHHHHHHHHHHHH----hhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHH
Confidence 011 1223568899988887532 11577888888888888876443221111112345677776666665
Q ss_pred HH
Q 011578 476 LL 477 (482)
Q Consensus 476 ~~ 477 (482)
++
T Consensus 314 ~~ 315 (318)
T 3te6_A 314 EA 315 (318)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-18 Score=158.25 Aligned_cols=189 Identities=12% Similarity=0.157 Sum_probs=125.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch----hhHHHHHHhc---CCcEEEEe
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEA---EGGILFVD 313 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a---~~~vl~iD 313 (482)
.++.++||+||||||||++|+++|+.++. +|+.+++++ .++|... ..++.+|+.+ .++|||||
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-------~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iD 131 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD 131 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46678999999999999999999998754 788887764 3444432 4566777764 46999999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCchhHHHHHhcCc-cccCCCcceeeCCCCCH-HHHH
Q 011578 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNE-GFCRRVTKFFHFNDFNS-EELA 386 (482)
Q Consensus 314 E~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~~~~~~~~~~~~-~l~~R~~~~i~~~~~~~-~~~~ 386 (482)
|+|.+...+..+ ......+++.|...++. ..+++|++|+..... ++ .+.+||+..|.+|+++. +++.
T Consensus 132 Eid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l-----~~~~l~~rf~~~i~~p~l~~r~~i~ 205 (272)
T 1d2n_A 132 DIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL-----QEMEMLNAFSTTIHVPNIATGEQLL 205 (272)
T ss_dssp CHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH-----HHTTCTTTSSEEEECCCEEEHHHHH
T ss_pred ChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc-----chhhhhcccceEEcCCCccHHHHHH
Confidence 999997654322 22234556666666653 345666665544322 33 67889999999998886 6666
Q ss_pred HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhccc
Q 011578 387 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 466 (482)
Q Consensus 387 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~ 466 (482)
.++... ..++.+.+..++....+ ..-+++.|.+.++++.|.... ....
T Consensus 206 ~i~~~~----------------~~~~~~~~~~l~~~~~g--~~~~g~ir~l~~~l~~a~~~~--------------~~~~ 253 (272)
T 1d2n_A 206 EALELL----------------GNFKDKERTTIAQQVKG--KKVWIGIKKLLMLIEMSLQMD--------------PEYR 253 (272)
T ss_dssp HHHHHH----------------TCSCHHHHHHHHHHHTT--SEEEECHHHHHHHHHHHTTSC--------------GGGH
T ss_pred HHHHhc----------------CCCCHHHHHHHHHHhcC--CCccccHHHHHHHHHHHhhhc--------------hHHH
Confidence 666541 13466777777765532 111457888888888775432 1245
Q ss_pred HHHHHHHHHHH
Q 011578 467 LEDLEAGLKLL 477 (482)
Q Consensus 467 ~~d~~~al~~~ 477 (482)
.+++..++...
T Consensus 254 ~~~~~~~l~~~ 264 (272)
T 1d2n_A 254 VRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 56666666554
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=150.41 Aligned_cols=203 Identities=23% Similarity=0.229 Sum_probs=138.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|.+..++.+.+++.. ....+++|+||||||||++|+.+++.+...+. ...++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~ 76 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNA 76 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG--GGGEEEEET
T ss_pred CHHHHcCcHHHHHHHHHHHhC----------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc--ccceEEecc
Confidence 467789999998888876421 13346999999999999999999998854221 225667766
Q ss_pred ccccccccccchhhHHHHHH-----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~-----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
+...+. ......+..... ...++||||||+|.+.+. ..+.|+..++. ..+++|++++...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TCTTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ccccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 543221 001111222222 145689999999999763 23556655553 3455555544332
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. .++++.+||. .+.|++|+.+++.++++..+.+.. ..++.+++..+.... .||.+.
T Consensus 144 ~-----~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~g~~r~ 199 (226)
T 2chg_A 144 R-----IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIYIS-------GGDFRK 199 (226)
T ss_dssp G-----SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------TTCHHH
T ss_pred h-----cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCHHH
Confidence 1 2788899996 999999999999999998876532 236778888887644 688888
Q ss_pred hHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 437 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 437 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
+.++++.+.... ..|+.+|+.+++.
T Consensus 200 l~~~l~~~~~~~--------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 200 AINALQGAAAIG--------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTC--------------SCBCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------------ceecHHHHHHHhc
Confidence 888888776532 4799999999875
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=173.66 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=132.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCC---CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA---RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
.|++++|.+..++.+.+++..... .........+. ..+.+++|+||||||||++|+++|++++. ++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~--~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~-------~~i~ 107 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWEN--SKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILE 107 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHH--HHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHh--hchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE
Confidence 578899999999999988654321 11111111221 24568999999999999999999998854 8889
Q ss_pred eecccccccccccchh-------hHHHHHHh--------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc
Q 011578 281 VQRTDLVGEFVGHTGP-------KTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~-------~~~~~~~~--------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 345 (482)
+++++.....+.+... .+...|.. ..++||||||+|.+....+ ..++.|+..++...
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~~ 179 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTS 179 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCS
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhcC
Confidence 9988765543322110 12233332 3458999999999987544 34566776666533
Q ss_pred --EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 346 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 346 --~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
+++++++...+. .+++.+|+ ..+.|++|+.+++.+++...+.+.. ..++++++..++...
T Consensus 180 ~~iIli~~~~~~~~------l~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~-----------~~i~~~~l~~la~~s 241 (516)
T 1sxj_A 180 TPLILICNERNLPK------MRPFDRVC-LDIQFRRPDANSIKSRLMTIAIREK-----------FKLDPNVIDRLIQTT 241 (516)
T ss_dssp SCEEEEESCTTSST------TGGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCCCTTHHHHHHHHT
T ss_pred CCEEEEEcCCCCcc------chhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc
Confidence 333333222111 24455554 7999999999999999988776542 235667788777654
Q ss_pred hhHhhccccCcchhHHHHHHHHH
Q 011578 424 TTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 424 ~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.|+.|.+.++++.+..
T Consensus 242 -------~GdiR~~i~~L~~~~~ 257 (516)
T 1sxj_A 242 -------RGDIRQVINLLSTIST 257 (516)
T ss_dssp -------TTCHHHHHHHHTHHHH
T ss_pred -------CCcHHHHHHHHHHHHh
Confidence 5777888787776543
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=168.41 Aligned_cols=202 Identities=18% Similarity=0.234 Sum_probs=134.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~ 280 (482)
.++.++|.+..++.+...+. .....++||+||||||||++|+++|+.+..... ....+++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~----------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCcHHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 46789999999888877632 124568999999999999999999999864221 23456777
Q ss_pred eecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
++++ +.|.|+.+..++.+|..+. ++||||| .. ..+.+.|+..|+.+.+++|++|+.+.+
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~-----------~~a~~~L~~~L~~g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY 303 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cc-----------hhHHHHHHHhhcCCCEEEEecCCHHHH
Confidence 7776 6788888788888887554 6999999 11 134488999999999999999998887
Q ss_pred HHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchh
Q 011578 358 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 437 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 437 (482)
...+..+|++.+||. .|.|+.|+.+++.+|++.++.+... .....++++++..+.....+. .....-.+..
T Consensus 304 ~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~-------~~~~~i~~~al~~l~~~s~~~-~~~~~lp~~a 374 (468)
T 3pxg_A 304 RKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLSDRY-ISDRFLPDKA 374 (468)
T ss_dssp HHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHHHHS-SCCSCTTHHH
T ss_pred HHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHHHHH-hccCcCCcHH
Confidence 666667999999995 6999999999999999987766432 123456777777777654321 1111112344
Q ss_pred HHHHHHHHHHh
Q 011578 438 DPMLVNARENL 448 (482)
Q Consensus 438 ~~~~~~a~~~~ 448 (482)
.++++.|....
T Consensus 375 i~ll~~a~~~~ 385 (468)
T 3pxg_A 375 IDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666665544
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-19 Score=141.31 Aligned_cols=91 Identities=29% Similarity=0.396 Sum_probs=68.7
Q ss_pred CCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcc
Q 011578 42 ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121 (482)
Q Consensus 42 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 121 (482)
..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 19 ~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 19 HMGSD-LGKKLLEAARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp ---CC-HHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCc-cchHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 33443 7788888888888888888887 466777777778888888888888888888888888888888888888
Q ss_pred eeeehhhccCCChHHHHHHH
Q 011578 122 LHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 122 Lh~A~~~~~~~~~~~~v~~L 141 (482)
||+|+ ..|+.+++++|
T Consensus 94 l~~A~----~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISI----DNGNEDLAEIL 109 (110)
T ss_dssp HHHHH----HHTCHHHHHHH
T ss_pred HHHHH----HcCCHHHHHHh
Confidence 88888 66777777765
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=167.46 Aligned_cols=233 Identities=17% Similarity=0.134 Sum_probs=141.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.+.... + .....++||+||||||||++|+++++.+........
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~--~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCchhccChHHHHHHHHHHh--h--------------CCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 35778999998776543221 1 113457999999999999999999997742100000
Q ss_pred -------------------CCeEEeecccccccccccch----------hhHHHHHHhcCCcEEEEecccccccCCCCCC
Q 011578 276 -------------------DRVTEVQRTDLVGEFVGHTG----------PKTRRRIKEAEGGILFVDEAYRLIPMQKADD 326 (482)
Q Consensus 276 -------------------~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~ 326 (482)
.+++.+........++|... ......+..+.++||||||++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 12222222111122333200 00112344556899999999999873
Q ss_pred ChhHHHHHHHHHhhhcCC---------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCC-CHHHHHHHHH
Q 011578 327 KDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF-NSEELAKILH 390 (482)
Q Consensus 327 ~~~~~~~~~~ll~~l~~~---------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~-~~~~~~~il~ 390 (482)
+.+.|++.|+.+ .+++|+++++... ..++++++||+..+.+++| +.+++.+|++
T Consensus 160 ------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 160 ------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG----DLRPQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC----CCCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 447777777653 5778887664321 1378999999888999999 5777778887
Q ss_pred HHHhcccc-----------------cc-ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 391 IKMNNQTE-----------------DS-LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 391 ~~l~~~~~-----------------~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
..+..... .. ..........++++++..+....++.. ..+.|.+.++++.|...+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~---~~~~R~~~~ll~~a~~~A~~~- 305 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG---SDGLRGELTLLRSARALAALE- 305 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS---SCSHHHHHHHHHHHHHHHHHT-
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHHHc-
Confidence 74321100 00 000001123678899999998877211 113488888888877665221
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
....|+.+|+.+|+..+.
T Consensus 306 --------~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 306 --------GATAVGRDHLKRVATMAL 323 (350)
T ss_dssp --------TCSBCCHHHHHHHHHHHH
T ss_pred --------CCCcCCHHHHHHHHHHHH
Confidence 223589999999888764
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=176.51 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=166.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~ 279 (482)
..|+.++|.+...+++.+.+. .....+++|+||||||||++|+++|+.+..... .....++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred CCCCCccCCHHHHHHHHHHHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 356789999988887776521 235678999999999999999999999864322 1234567
Q ss_pred Eeeccccc--ccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
.++.+.+. .++.|+.+..++.+|+.+. ++||||||+|.+.+..... +....+.+.|...++.+.+.+|++++.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence 77766665 4578888888888887654 5999999999998765422 223466677888888999999999887
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
..+...+..+|++.+||. .+.|+.|+.+++.+|++..+..... .....++.+++..++....+.-. .....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~-------~~~v~~~~~al~~~~~~s~~~i~-~~~lp 395 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAVKYIN-DRHLP 395 (758)
T ss_dssp HHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHHCT-TSCTT
T ss_pred hHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhhhcc-cccCc
Confidence 776555566899999996 7999999999999999987765321 12245667777766654432111 11122
Q ss_pred chhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 435 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
..+..++++|.......-. ......|+.+|+.+++..+
T Consensus 396 ~~~i~lld~a~~~~~~~~~-----~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPV-----SKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSS-----CCCCCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccc-----cccCCccCHHHHHHHHHHh
Confidence 3456677776654321100 0122467888888887765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-18 Score=166.87 Aligned_cols=231 Identities=16% Similarity=0.077 Sum_probs=151.5
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC--CCCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~--~~~~~~~~~~~ 283 (482)
++++|.+...+.+..++... .....+.+++|+||||||||++|+++++.+..... ....+++.+++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA------------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG------------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHH------------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 56899999888888764322 11245678999999999999999999998843200 01236777886
Q ss_pred cccccc----------------ccccchhh-HHHHHHh---c-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 284 TDLVGE----------------FVGHTGPK-TRRRIKE---A-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 284 ~~~~~~----------------~~g~~~~~-~~~~~~~---a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
...... ..|.+... ...++.. . ...||||||+|.+...+ ....++..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence 643211 11222222 2233322 1 24699999999997652 12367777777776
Q ss_pred ----CCcEEEEEecCchhHHHHHhcCccccCCCcc-eeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 343 ----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 343 ----~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
...+++|++++..+... ..++.+.+||.. .+.|++|+.+++.+|++..+..... ...++++++.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------~~~~~~~~~~ 229 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------PGVLDPDVVP 229 (387)
T ss_dssp CC-----CEEEEECSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------TTTBCSSHHH
T ss_pred hcCCCceEEEEEEECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------CCCCCHHHHH
Confidence 55677888776554311 127888999975 8999999999999999998864210 1244566677
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.++...+ ...|+.|.+.++++.|...+.. +....|+.+|+.++++.+.
T Consensus 230 ~l~~~~~----~~~G~~r~~~~~l~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 230 LCAALAA----REHGDARRALDLLRVAGEIAER---------RREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHH----SSSCCHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHH----HhccCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHh
Confidence 7766553 2248889999999988765421 1224689999998888764
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=158.94 Aligned_cols=186 Identities=18% Similarity=0.145 Sum_probs=129.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..++. ....+..+|++||||||||++|+++|+.++. ++++++
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~---------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~ 80 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITS---------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVN 80 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHH---------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEE
T ss_pred CCHHHHhCcHHHHHHHHHHHH---------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEc
Confidence 357889999999998888743 1124455788899999999999999998865 788888
Q ss_pred cccccccccccchhhHHHHHH---hc-----CCcEEEEecccccc-cCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIK---EA-----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~---~a-----~~~vl~iDE~d~l~-~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~ 351 (482)
+++.. ...+++.+. .. ..+||||||+|.+. . ...+.|+..++. ..+++|++
T Consensus 81 ~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~-----------~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 81 GSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA-----------ESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp TTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH-----------HHHHHHHHHHHHHGGGCEEEEE
T ss_pred ccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH-----------HHHHHHHHHHHhCCCCcEEEEE
Confidence 76632 122333222 11 45899999999997 4 334667776664 34555555
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccH-HHHHHHHHHHhhHhhcc
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM-DAIAALIEKETTEKQRR 430 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 430 (482)
++... . .++++++|| .+++|++|+.+++.+|++.++..........+ ..+++ +++..++...
T Consensus 143 ~n~~~--~---l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~----~~~~~~~~~~~l~~~~------- 205 (324)
T 3u61_B 143 ANNID--G---IIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG----IAIADMKVVAALVKKN------- 205 (324)
T ss_dssp ESSGG--G---SCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT----CCBSCHHHHHHHHHHT-------
T ss_pred eCCcc--c---cCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCCCcHHHHHHHHHhC-------
Confidence 44332 2 389999999 68999999999988887766554321111112 34555 7888887763
Q ss_pred ccCcchhHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNAR 445 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~ 445 (482)
.||.|.+.+.++.+.
T Consensus 206 ~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 206 FPDFRKTIGELDSYS 220 (324)
T ss_dssp CSCTTHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHh
Confidence 688899999988886
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=162.34 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=140.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+++.+...+. ...+++|+||||||||++|+++|+.++. +++.++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~------------------~~~~vll~G~pGtGKT~la~~la~~~~~-------~~~~i~ 78 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGIC------------------TGGHILLEGVPGLAKTLSVNTLAKTMDL-------DFHRIQ 78 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHH------------------HTCCEEEESCCCHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred HhccceeCcHHHHHHHHHHHH------------------cCCeEEEECCCCCcHHHHHHHHHHHhCC-------CeEEEe
Confidence 445679999999887776521 1258999999999999999999998754 666666
Q ss_pred ccc--ccccccccchhh-HHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------
Q 011578 283 RTD--LVGEFVGHTGPK-TRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------- 344 (482)
Q Consensus 283 ~~~--~~~~~~g~~~~~-~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----------- 344 (482)
+.. ....++|..... ....+... ..+||||||++.+.+ .+.+.|++.|+++
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~ 147 (331)
T 2r44_A 79 FTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPL 147 (331)
T ss_dssp CCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEEC
T ss_pred cCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEEC
Confidence 531 111122211000 00001111 137999999999876 3447778777643
Q ss_pred --cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccc-----------ccccccCcc
Q 011578 345 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL-----------YGFKLHSSC 411 (482)
Q Consensus 345 --~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~-----------~~~~~~~~~ 411 (482)
.+++++++++.........++++++||+..+.+++|+.+++.+|++..+......... ........+
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 227 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTI 227 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBC
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCC
Confidence 3566666554331111113789999998889999999999999999987653210000 000012345
Q ss_pred cHHHHHHHHHHHhhHh-------------hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEK-------------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+++.+..++....... .....+.|.+.++++.|...+..+ ....|+.+|+.+++..+.
T Consensus 228 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~---------g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 228 SESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN---------NRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHh
Confidence 6666766665432111 111235677777777766554221 223578888888877654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=161.35 Aligned_cols=225 Identities=13% Similarity=0.110 Sum_probs=152.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCC-CCCeEEe
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILP-TDRVTEV 281 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~-~~~~~~~ 281 (482)
++++|.+...+.+..++.... ....+.+++|+||||||||++|+++++.+... .... ..+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~------------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV------------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH------------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 679999999998887754432 12356689999999999999999999988542 0011 3367888
Q ss_pred eccccc-----------ccc-------cccchhh-HHHHHHhc--CCcEEEEecccccccCC-CCCCChhHHHH-HHHHH
Q 011578 282 QRTDLV-----------GEF-------VGHTGPK-TRRRIKEA--EGGILFVDEAYRLIPMQ-KADDKDYGIEA-LEEIM 338 (482)
Q Consensus 282 ~~~~~~-----------~~~-------~g~~~~~-~~~~~~~a--~~~vl~iDE~d~l~~~~-~~~~~~~~~~~-~~~ll 338 (482)
++.... ..+ .|.+... +..++... .+.||||||+|.+.... + .+ +..|+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~--------~~~l~~l~ 159 (384)
T 2qby_B 88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGG--------DIVLYQLL 159 (384)
T ss_dssp EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTS--------HHHHHHHH
T ss_pred ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCC--------ceeHHHHh
Confidence 765432 111 1222222 33333322 22499999999997653 3 44 56666
Q ss_pred hhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHH
Q 011578 339 SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 418 (482)
Q Consensus 339 ~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (482)
... ..+.+|++++..+... ..++++.+||...+.|++|+.+++.+|++.++.+. +. ...++++++..
T Consensus 160 ~~~--~~~~iI~~t~~~~~~~--~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~--------~~-~~~~~~~~~~~ 226 (384)
T 2qby_B 160 RSD--ANISVIMISNDINVRD--YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG--------LI-KGTYDDEILSY 226 (384)
T ss_dssp TSS--SCEEEEEECSSTTTTT--TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT--------SC-TTSCCSHHHHH
T ss_pred cCC--cceEEEEEECCCchHh--hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh--------cc-cCCcCHHHHHH
Confidence 665 6777777776543211 12788888997899999999999999999988631 10 12456677777
Q ss_pred HHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 419 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
++.... ..+||.|.+.++++.|...+. ....|+.+|+.++++++.
T Consensus 227 i~~~~~----~~~G~~r~a~~~l~~a~~~a~-----------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 227 IAAISA----KEHGDARKAVNLLFRAAQLAS-----------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHH----TTCCCHHHHHHHHHHHHHHTT-----------SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHH----hccCCHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence 776553 235888888999999877652 224688899988887764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=144.23 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=138.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 276 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------- 276 (482)
.+++++|.+..++.+..++.. ...+..++|+||||||||++++.+++.+.........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH---------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 456799999999888876431 1234578999999999999999999988643221111
Q ss_pred ----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 277 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 277 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
.++.+.... ......++++++.. .+.||||||+|.+.+ ..++.|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~ 148 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 148 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHH
Confidence 112222111 01123345555543 348999999999865 44577777
Q ss_pred hhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 340 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 340 ~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
.++. ..+++|++++.... ..+++.+|+ ..++|++|+.+++.++++.++.+.. ..++++.+.
T Consensus 149 ~l~~~~~~~~~i~~t~~~~~-----~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~-----------~~~~~~~~~ 211 (250)
T 1njg_A 149 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ 211 (250)
T ss_dssp HHHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHH
T ss_pred HHhcCCCceEEEEEeCChHh-----CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHH
Confidence 7765 45666666544331 267788887 8999999999999999999887532 345778888
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
.+.... .|+.+.+.++++.|.... ...||.+|+.+++
T Consensus 212 ~l~~~~-------~G~~~~~~~~~~~~~~~~-------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 212 LLARAA-------EGSLRDALSLTDQAIASG-------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHH-------TTCHHHHHHHHHHHHTTT-------------TSSBCHHHHHHHS
T ss_pred HHHHHc-------CCCHHHHHHHHHHHHhcc-------------CceecHHHHHHHh
Confidence 887765 678899999988874321 1269999998875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=151.13 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=126.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-hcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~vl~iDE~d~l~~ 320 (482)
...+++|+||||||||++|+++++.+...+ ..++.+++.++...+. +.+. .....||||||++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELE----RRSFYIPLGIHASIST--------ALLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEEGGGGGGSCG--------GGGTTGGGSSEEEEETGGGGTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHH--------HHHHhccCCCEEEEeccccccC
Confidence 457899999999999999999999998643 3667777766544321 1111 13468999999999876
Q ss_pred CCCCCCChhHHHHHHHHHhh-hcCCcE-EEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 321 MQKADDKDYGIEALEEIMSV-MDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~-l~~~~~-~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
... ....+..++.. .+.+.+ +|+.++..... .....+.+.+||. ..++|++|+.+++.++++.++...
T Consensus 119 ~~~------~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 119 HPL------WEEAIFDLYNRVAEQKRGSLIVSASASPME--AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp CHH------HHHHHHHHHHHHHHHCSCEEEEEESSCTTT--TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred CHH------HHHHHHHHHHHHHHcCCCeEEEEcCCCHHH--HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence 431 11222222222 233554 44444332211 1112477888886 899999999999999999988753
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 397 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
. ..++++++..+.... .+|.|.+.++++.+...+. .+...||.+|+.++++
T Consensus 191 ~-----------~~~~~~~~~~l~~~~-------~g~~r~l~~~l~~~~~~a~----------~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 191 G-----------LQLPEDVGRFLLNRM-------ARDLRTLFDVLDRLDKASM----------VHQRKLTIPFVKEMLR 241 (242)
T ss_dssp T-----------CCCCHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHH----------HHTCCCCHHHHHHHHT
T ss_pred C-----------CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HhCCCCcHHHHHHHhh
Confidence 2 356778888887753 6899999999998877641 1224699999998874
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-18 Score=150.18 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=116.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~~ 279 (482)
..+++++|.+...+.+.+.+. ...+.+++|+||||||||++|+++++.+...... ...+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred ccccccccchHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 346788999988777776521 1345789999999999999999999998652211 134667
Q ss_pred Eeeccccc--ccccccchhhHHHHHHh----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.+++..+. ..+.|.....+.+++.. ..+.||||||+|.+.+.+...... .+.+.|...++.+.+.+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~ 159 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHHTTSCCEEEEEC
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhhccCCeEEEEeCC
Confidence 77766554 34455555566666653 234699999999998654321111 2335555666778888888887
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHH
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il 389 (482)
..........++++.+||. .+.|++|+.+++.+|+
T Consensus 160 ~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 7766655566899999996 7999999999998875
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=174.32 Aligned_cols=217 Identities=19% Similarity=0.198 Sum_probs=136.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~ 279 (482)
..++.++|.+...+++.+++. .....+++|+||||||||++|+++|+.+.... .....+++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred CCCcccCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 356789999987777776531 13456899999999999999999999985421 12245788
Q ss_pred Eeeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.++.+.+. ..+.|+.+..+..+|..+ .++||||||+|.+.+..... ....+.+.|...++.+.+.+|++|+
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~~~i~~I~at~ 307 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATT 307 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEEC
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhCCCeEEEEecC
Confidence 88888776 568888888888888765 34799999999998654321 2235567778888889999999988
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
...... +..+|++.+||+ .+.|++|+.+++.+|++.++..... .....++++++..++....+.- ....-
T Consensus 308 ~~~~~~-~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~-------~~~~~i~~~al~~~~~ls~r~i-~~~~l 377 (854)
T 1qvr_A 308 LDEYRE-IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV-------HHGVRISDSAIIAAATLSHRYI-TERRL 377 (854)
T ss_dssp HHHHHH-HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH-------HTTCEECHHHHHHHHHHHHHHC-CSSCT
T ss_pred chHHhh-hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh-------hcCCCCCHHHHHHHHHHHhhhc-ccccC
Confidence 877655 566999999996 5999999999999999987765421 1224556677776665443211 11111
Q ss_pred cchhHHHHHHHHHHh
Q 011578 434 GGLVDPMLVNARENL 448 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~ 448 (482)
......++++|....
T Consensus 378 p~kai~lldea~a~~ 392 (854)
T 1qvr_A 378 PDKAIDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 234455566665544
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=152.45 Aligned_cols=188 Identities=26% Similarity=0.277 Sum_probs=131.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++..++.+..++. .....+++|+||||||||++|+++++.+.... ...+++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~~~~ 76 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFGEN--WRDNFIEMNA 76 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTT----------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC--HHHHCEEEET
T ss_pred CHHHHhCCHHHHHHHHHHHh----------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc--ccCCeEEEeC
Confidence 46789999999988887521 12344699999999999999999999874211 1125677777
Q ss_pred ccccccccccchhhHHHHHH-----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~-----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
++..+. ......+..... ...+.||||||+|.+.+ ...+.|+..++. ..+++|++++...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 654321 111112222221 13468999999999976 344778888876 4566666554332
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. ..|++.+|+ ..++|++|+.+++.++++..+.+.. ..++++++..++... .||.|.
T Consensus 144 --~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~~~-------~G~~r~ 199 (319)
T 2chq_A 144 --R---IIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIYIS-------GGDFRK 199 (319)
T ss_dssp --G---SCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTC-----------CCBCHHHHHHHHHTT-------TTCHHH
T ss_pred --h---cchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCHHH
Confidence 1 278899999 5999999999999999999887643 346788888888543 678888
Q ss_pred hHHHHHHHHH
Q 011578 437 VDPMLVNARE 446 (482)
Q Consensus 437 l~~~~~~a~~ 446 (482)
+.+.++.+..
T Consensus 200 ~~~~l~~~~~ 209 (319)
T 2chq_A 200 AINALQGAAA 209 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=172.12 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=136.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++.++|.+..++++...+. .....++||+||||||||++|+++|+.+... .......++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~----------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCchHHHHHHHHHHh----------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 46789999999988887632 1355689999999999999999999998532 1223446666
Q ss_pred eecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
++. ..+|.|+.+..++.+|..+. ++||||| .. ..+.+.|+..|+.+.+++|++|+...+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~-----------~~~~~~L~~~l~~~~v~~I~at~~~~~ 303 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY 303 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc----Cc-----------hhHHHHHHHHHhcCCEEEEeCCChHHH
Confidence 665 55688888888888887654 6999999 11 134478999999999999999999887
Q ss_pred HHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchh
Q 011578 358 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 437 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 437 (482)
...+..+|++++|| ..|.|+.|+.+++.+|++.++..... .....++++++..++....+. ..........
T Consensus 304 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~-------~~~~~i~~~al~~~~~~s~~~-i~~~~~p~~a 374 (758)
T 3pxi_A 304 RKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLSDRY-ISDRFLPDKA 374 (758)
T ss_dssp HHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHHHHS-SCCSCTTHHH
T ss_pred HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhcc-cccCcCCcHH
Confidence 77667799999999 67999999999999999987665432 223456778877776654321 1111222345
Q ss_pred HHHHHHHHHHhh
Q 011578 438 DPMLVNARENLD 449 (482)
Q Consensus 438 ~~~~~~a~~~~~ 449 (482)
..++..|+....
T Consensus 375 i~ll~~a~~~~~ 386 (758)
T 3pxi_A 375 IDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666665543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-16 Score=150.45 Aligned_cols=207 Identities=17% Similarity=0.219 Sum_probs=136.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|++.+++.+...+..-. .+ ..++.+++|+|||||||||+|+++|+.++. ++...++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~---~~--------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg 84 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK---MR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSG 84 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH---HH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred cHHHccCcHHHHHHHHHHHHHHH---hc--------CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEec
Confidence 56678898888777765533221 11 124578999999999999999999998864 4444443
Q ss_pred ccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------- 343 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------------------- 343 (482)
+.+. ....+..++.. ....|+||||++.+.+.. .+.|+..++.
T Consensus 85 ~~~~------~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~-----------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 85 PVLV------KQGDMAAILTSLERGDVLFIDEIHRLNKAV-----------EELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp TTCC------SHHHHHHHHHHCCTTCEEEEETGGGCCHHH-----------HHHHHHHHHTSCCCC--------------
T ss_pred hHhc------CHHHHHHHHHHccCCCEEEEcchhhcCHHH-----------HHHHHHHHHhcccceeeccCccccccccc
Confidence 3221 12334444444 356899999999987522 2333333322
Q ss_pred -CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 344 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 344 -~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
..+.++.+++.... ..+++++||...+.|++|+.+++.+|++...+... ..++++++..++..
T Consensus 148 l~~~~li~at~~~~~-----Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-----------~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 148 IQPFTLVGATTRSGL-----LSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----------VEIEDAAAEMIAKR 211 (334)
T ss_dssp -CCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHT
T ss_pred CCCeEEEEecCCccc-----CCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHHh
Confidence 12455665544322 27889999988899999999999999998776431 35677888888775
Q ss_pred HhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 423 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
. .|+.|.+.++++++...+..+ ....||.+++.++++.+
T Consensus 212 ~-------~G~~R~a~~ll~~~~~~a~~~---------~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 212 S-------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL 250 (334)
T ss_dssp S-------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred c-------CCChHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHh
Confidence 4 577888888888876654221 11346777777776654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=154.77 Aligned_cols=190 Identities=18% Similarity=0.256 Sum_probs=127.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..++ ......+++|+||||||||++|+++++.+.... .....++.++
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l----------------~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~ 96 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTL----------------KSANLPHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELN 96 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHT----------------TCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEEC
T ss_pred CCHHHhhCCHHHHHHHHHHH----------------hcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEc
Confidence 34778999999988887762 122345699999999999999999999986310 0112567777
Q ss_pred cccccccccccchhhHHHHHH---------------hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---C
Q 011578 283 RTDLVGEFVGHTGPKTRRRIK---------------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---G 344 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~---------------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~ 344 (482)
+++..+. +.....+..... .....||||||+|.+.+..+ +.|+..|+. .
T Consensus 97 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~-----------~~Ll~~le~~~~~ 163 (353)
T 1sxj_D 97 ASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQ-----------SALRRTMETYSGV 163 (353)
T ss_dssp SSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHH-----------HHHHHHHHHTTTT
T ss_pred cccccch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHH-----------HHHHHHHHhcCCC
Confidence 7653211 100011111111 12346999999999987433 667766664 3
Q ss_pred cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 345 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 345 ~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
..++++++++.. ..|++++|+ ..+.|++|+.+++..+++..+.+.. ..++++++..++...
T Consensus 164 ~~~il~~~~~~~------l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~~~- 224 (353)
T 1sxj_D 164 TRFCLICNYVTR------IIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERILDIS- 224 (353)
T ss_dssp EEEEEEESCGGG------SCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHHHT-
T ss_pred ceEEEEeCchhh------CcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc-
Confidence 344444443332 278889999 4899999999999999998876532 346788888888765
Q ss_pred hHhhccccCcchhHHHHHHHHHH
Q 011578 425 TEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.|+.|.+.++++.+...
T Consensus 225 ------~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 225 ------AGDLRRGITLLQSASKG 241 (353)
T ss_dssp ------SSCHHHHHHHHHHTHHH
T ss_pred ------CCCHHHHHHHHHHHHHh
Confidence 47788888888776654
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-17 Score=129.79 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=82.3
Q ss_pred cccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 6 ~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
..+.+..|.|+||+||..|+.+.++.|+.. +.++|..+.. |+||||+||..|+.+++++|++ .+++++.+|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~-g~tpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKN-GSTPLHLAARNGHLEVVKLLLE----AGADVXAQDKFG 90 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTS
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCccccccCC
Confidence 356678899999999999999999999954 7788888876 9999999999999999999999 578899999999
Q ss_pred ChHHHHHHHcCCHHHHHHH
Q 011578 86 ETPLHMAAKNGCNEAAKLL 104 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~L 104 (482)
+||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999987
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=152.83 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=132.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~ 319 (482)
.+.+++|+||||||||++|+++++.+... ..+++.+++.++...+.+.........|.. ...+||||||++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT----TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence 45689999999999999999999998653 347888888777655544332222222221 246899999999987
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.++. ....++..+-...+.+..+|++++++.. .+...++++.+||. ..++|++ +.+++.+|++.++.+..
T Consensus 112 ~~~~-----~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~ 183 (324)
T 1l8q_A 112 GKER-----TQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 183 (324)
T ss_dssp TCHH-----HHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT
T ss_pred CChH-----HHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC
Confidence 5321 1112333333334556666666643322 11123788999995 6899999 99999999999987532
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcc-cHHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI-TLEDLEAGLKL 476 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i-~~~d~~~al~~ 476 (482)
..++++++..++.. . +|.|.+.++++.+.... ..... ......| |.+++.++++.
T Consensus 184 -----------~~l~~~~l~~l~~~-------~-g~~r~l~~~l~~~~~~~-~~~l~----~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 184 -----------LELRKEVIDYLLEN-------T-KNVREIEGKIKLIKLKG-FEGLE----RKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp -----------CCCCHHHHHHHHHH-------C-SSHHHHHHHHHHHHHHC-HHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHh-------C-CCHHHHHHHHHHHHHcC-HHHhc----cccccCCCCHHHHHHHHHH
Confidence 35677888877764 2 78899999999887761 00000 1234568 88888888776
Q ss_pred H
Q 011578 477 L 477 (482)
Q Consensus 477 ~ 477 (482)
.
T Consensus 240 ~ 240 (324)
T 1l8q_A 240 Y 240 (324)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=154.12 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=152.6
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|.+...+.+.+.+..+ +....+++++|++|||||++|++++... .....+|+.++++.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s----~r~~~~fv~v~~~~ 198 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKLS----DRSKEPFVALNVAS 198 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHHS----TTTTSCEEEEETTT
T ss_pred hhhhhccHHhhHHHHHHHHh--------------cCCCCCeEEecCCCcCHHHHHHHHHHhc----CCCCCCeEEEecCC
Confidence 35677766555555544332 2345678999999999999999999854 34456999999987
Q ss_pred ccc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC---------
Q 011578 286 LVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------- 344 (482)
Q Consensus 286 ~~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--------- 344 (482)
+.. ..+|+.. ......|+.|.+|+||||||+.+.+..| ..|++.++++
T Consensus 199 ~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q-----------~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 199 IPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQ-----------AKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp SCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHH-----------HHHHHHHHHSEECCBTCCS
T ss_pred CCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHH-----------HHHHHHHhcCcEEeCCCCc
Confidence 533 2444321 1234578899999999999999988444 7788887653
Q ss_pred ----cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 345 ----KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 345 ----~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
.+.+|+||+.+....+-.. .+.|..|+ ...|.+|++.. +++..+++.++++.... ++. -...+++++
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~~-~~~~~~~~a 343 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK---YAK-EVEGFTKSA 343 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTC-CCCEECHHH
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHH---cCC-CCCCCCHHH
Confidence 3578888776654433111 24444455 45677788764 99999999998876431 111 124689999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
+..+..+.| +||.|+++|++++|+... +...|+.+|+...+
T Consensus 344 ~~~l~~~~w------pGNvreL~~~i~~~~~~~------------~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 344 QELLLSYPW------YGNVRELKNVIERAVLFS------------EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHSCC------TTHHHHHHHHHHHHHHHC------------CSSEECHHHHHHHC
T ss_pred HHHHHhCCC------CcHHHHHHHHHHHHHHhC------------CCCcCcHHHCcHhh
Confidence 999999998 999999999999998764 11357778876543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-17 Score=163.60 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=130.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--c-CCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--A-EGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a-~~~vl~iDE~d~l~ 319 (482)
+.+++|+||||||||++|+++++.+.... ...+++.+++..+...+++.........|.. . ...||||||++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC--CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 56899999999999999999999886431 1336788888776555443322221222322 2 56899999999998
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.+.. ....++..|-...+.+..+|++++.+.. .+...++++++||. .++.+++|+.+++.+|++..+...
T Consensus 208 ~~~~-----~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~- 279 (440)
T 2z4s_A 208 GKTG-----VQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE- 279 (440)
T ss_dssp SCHH-----HHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH-
T ss_pred CChH-----HHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-
Confidence 6311 1122333333334556666666543222 11123788899995 789999999999999999988653
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
+ ..++++++..++... .+|.|.+.++++.+...+... ...||.+++.++++.+
T Consensus 280 ------~----~~i~~e~l~~la~~~-------~gn~R~l~~~L~~~~~~a~~~----------~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 280 ------H----GELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVYKETT----------GKEVDLKEAILLLKDF 332 (440)
T ss_dssp ------T----CCCCTTHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHS----------SSCCCHHHHHHHTSTT
T ss_pred ------C----CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHHHH
Confidence 2 234556777777543 689999999999988765211 1236677776666543
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=149.55 Aligned_cols=188 Identities=25% Similarity=0.312 Sum_probs=128.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+.... ....++.+++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~--~~~~~~~~~~ 84 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGEN--WRHNFLELNA 84 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG--HHHHEEEEET
T ss_pred CHHHhhCCHHHHHHHHHHHHc----------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCc--ccCceEEeec
Confidence 467899999999988876431 1344699999999999999999999875321 0124677776
Q ss_pred ccccccccccchhhHHHHHH-----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~-----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
++..+. ......+.+... ...++||||||+|.+.+ ...+.|+..++. ..+++|++++...
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 543221 000111222111 14568999999999976 334677777764 3455555543322
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. ..+++.+|+. .+.|++|+.+++..+++..+.+.. ..++++++..++... .||.|.
T Consensus 152 ~-----l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~g~~r~ 207 (327)
T 1iqp_A 152 K-----IIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAILYIA-------EGDMRR 207 (327)
T ss_dssp G-----SCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHHHHH-------TTCHHH
T ss_pred c-----cCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHC-------CCCHHH
Confidence 1 2678888984 899999999999999998887542 246778888888754 678888
Q ss_pred hHHHHHHHHH
Q 011578 437 VDPMLVNARE 446 (482)
Q Consensus 437 l~~~~~~a~~ 446 (482)
+.++++.+..
T Consensus 208 ~~~~l~~~~~ 217 (327)
T 1iqp_A 208 AINILQAAAA 217 (327)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888877653
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=145.05 Aligned_cols=184 Identities=24% Similarity=0.258 Sum_probs=126.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|++..++.+..++. .....+++|+||||+|||++|+++++.+..... ...++.+++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~ 80 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA 80 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred CHHHHHCCHHHHHHHHHHHH----------------cCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCCEEEecC
Confidence 46789999999998887632 123345999999999999999999998742110 114667766
Q ss_pred ccccccccccchhhHHHHHH----------hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEe
Q 011578 284 TDLVGEFVGHTGPKTRRRIK----------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 351 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~----------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~ 351 (482)
++..+ ...+++.++ ..+..||+|||+|.+... ..+.|+..++. ...++|++
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~~~~~il~ 143 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELYSNSTRFAFA 143 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHTTTTEEEEEE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhccCCCceEEEE
Confidence 54321 122333322 123589999999999762 34666666664 34555555
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
++... . ..|++.+|+ ..+.|++|+.+++.++++..+.+.. ..++++++..++... .
T Consensus 144 ~~~~~--~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~ 199 (323)
T 1sxj_B 144 CNQSN--K---IIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAIIFTA-------E 199 (323)
T ss_dssp ESCGG--G---SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------T
T ss_pred eCChh--h---chhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence 43322 1 278889998 5999999999999999998886532 245778888887765 5
Q ss_pred cCcchhHHHHHHHHH
Q 011578 432 MNGGLVDPMLVNARE 446 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~ 446 (482)
|+.+.+.+.++.+..
T Consensus 200 G~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 200 GDMRQAINNLQSTVA 214 (323)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 777888888877653
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=152.00 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=147.0
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
++++|.+...+.+.+++... .....+..++++||||||||++++.+++.+...... ..+++.+++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~------------~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~ 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPL------------YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQ 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGG------------GGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHH------------HcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCC
Confidence 56899998888888763322 112356789999999999999999999988542110 22567777543
Q ss_pred ccc------c----------ccccchhh-HH---HHHHhcC-CcEEEEecccccccCC-CCCCChhHHHHHHHHHhhh--
Q 011578 286 LVG------E----------FVGHTGPK-TR---RRIKEAE-GGILFVDEAYRLIPMQ-KADDKDYGIEALEEIMSVM-- 341 (482)
Q Consensus 286 ~~~------~----------~~g~~~~~-~~---~~~~~a~-~~vl~iDE~d~l~~~~-~~~~~~~~~~~~~~ll~~l-- 341 (482)
... . ..|.+... .. +.+.... +.||||||++.+.... + .++..|+..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~ 158 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSE 158 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhh
Confidence 211 1 01211222 22 2233222 5799999999997643 2 4556676666
Q ss_pred -cCCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 342 -DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 342 -~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
....+.+|++++..+... ..++.+.+||. ..+.|++|+.+++.++++..+.+.. . ...++.+++..+
T Consensus 159 ~~~~~~~~I~~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~l 227 (386)
T 2qby_A 159 VNKSKISFIGITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--------K-PGVLPDNVIKLC 227 (386)
T ss_dssp CCC--EEEEEEESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--------C-SSCSCHHHHHHH
T ss_pred cCCCeEEEEEEECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCHHHHHHH
Confidence 456777888776554321 12677888885 4899999999999999998876421 0 235677777777
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..... ...|+.+.+.++++.+...+.. +....|+.+|+..|++.+.
T Consensus 228 ~~~~~----~~~G~~r~~~~ll~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 228 AALAA----REHGDARRALDLLRVSGEIAER---------MKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHH----HTTCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHHH
T ss_pred HHHHH----HhcCCHHHHHHHHHHHHHHHHh---------cCCCccCHHHHHHHHHHHh
Confidence 76553 1137888888888888665421 1224688888888887664
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-15 Score=145.82 Aligned_cols=188 Identities=17% Similarity=0.195 Sum_probs=129.3
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 276 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------- 276 (482)
.|++++|++...+.+...+.. ...+..++|+||||||||++|+++++.+.........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~---------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH---------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred chhhccCcHHHHHHHHHHHHh---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 467899999999888876421 1233468999999999999999999988542211111
Q ss_pred ----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 277 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 277 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
.++.+++..- .....++++++.. .+.||||||+|.+.. ...+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence 1233332210 1122345555543 247999999999975 34577888
Q ss_pred hhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 340 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 340 ~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
.++. ..+++|++++.... ..+.+.+|+ ..++|++|+.+++.++++.++++.. ..++.+++.
T Consensus 142 ~le~~~~~~~~Il~~~~~~~-----l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~a~~ 204 (373)
T 1jr3_A 142 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ 204 (373)
T ss_dssp HHHSCCSSEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH
T ss_pred HHhcCCCceEEEEEeCChHh-----CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence 8875 45666666543321 267788898 8999999999999999999887542 245778887
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.++... .|+.+.+.++++.+...
T Consensus 205 ~l~~~~-------~G~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 205 LLARAA-------EGSLRDALSLTDQAIAS 227 (373)
T ss_dssp HHHHHS-------SSCHHHHHHHHHHHHHH
T ss_pred HHHHHC-------CCCHHHHHHHHHHHHHh
Confidence 777654 67888999998887643
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=163.61 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=142.5
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|++.+|+.+...+..- ..+.... .......++||+||||||||++|+++|+.+........ ...++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g----~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~---~~~~~~~ 366 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG----VPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG---KGSTAAG 366 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC----CCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT---TCSTTTT
T ss_pred chhcChHHHHHHHHHHHhCC----CcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC---Ccccccc
Confidence 35899999887775321000 0000000 01112338999999999999999999987643211100 0012222
Q ss_pred cccccccc----chhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------------E
Q 011578 286 LVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------V 346 (482)
Q Consensus 286 ~~~~~~g~----~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~ 346 (482)
+.+..+.. ........+..|.++||||||+|++.+. ..+.|++.|+.+. +
T Consensus 367 l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 367 LTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 22221111 0011123456778899999999999874 4488888887644 3
Q ss_pred EEEEecCchh--HH------HHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhccccccccccc------------
Q 011578 347 VVIFAGYSEP--MK------RVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTEDSLLYGF------------ 405 (482)
Q Consensus 347 ~vi~~~~~~~--~~------~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~~~~~~~~------------ 405 (482)
.||+|+++.. ++ .-+..++++++|||..+. .+.|+.+ ...|++..+...........+
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~a 514 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYA 514 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHH
Confidence 5777766542 00 001348999999986554 5556666 778888777653310000000
Q ss_pred --cccCcccHHHHHHHHHHHhhHhh--------ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 406 --KLHSSCSMDAIAALIEKETTEKQ--------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 406 --~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.+.+.+++++...+...+...+. ..+++.|.+.+++..|...+..+.. ..|+.+|+.+|+.
T Consensus 515 r~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~---------~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 515 RKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALK---------AEVTREDAERAIN 585 (595)
T ss_dssp HHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS---------CCSSHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc---------CCCCHHHHHHHHH
Confidence 12345565666666665432110 2367889999999998887644432 4699999999998
Q ss_pred HHHh
Q 011578 476 LLLR 479 (482)
Q Consensus 476 ~~~~ 479 (482)
-+..
T Consensus 586 l~~~ 589 (595)
T 3f9v_A 586 IMRL 589 (595)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=131.89 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=94.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++|.+...+.+.+.+..+ .....+++|+||||||||++|+++++.. .....+|+ ++++.+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~--------------a~~~~~vll~G~~GtGKt~lA~~i~~~~----~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL--------------SETDIAVWLYGAPGTGRMTGARYLHQFG----RNAQGEFV-YRELTP 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH--------------TTCCSCEEEESSTTSSHHHHHHHHHHSS----TTTTSCCE-EEECCT
T ss_pred CceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCCHHHHHHHHHHhC----CccCCCEE-EECCCC
Confidence 4678887777777665433 2356789999999999999999999844 23345788 888876
Q ss_pred cccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHh--
Q 011578 287 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIA-- 362 (482)
Q Consensus 287 ~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~-- 362 (482)
... ......|+.+.+++|||||+|.+.+..| ..|+..|.. ..+.+|++|+.+.......
T Consensus 63 ~~~------~~~~~~~~~a~~g~l~ldei~~l~~~~q-----------~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 63 DNA------PQLNDFIALAQGGTLVLSHPEHLTREQQ-----------YHLVQLQSQEHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp TTS------SCHHHHHHHHTTSCEEEECGGGSCHHHH-----------HHHHHHHHSSSCSSCEEEEESSCHHHHHHHSC
T ss_pred Ccc------hhhhcHHHHcCCcEEEEcChHHCCHHHH-----------HHHHHHHhhcCCCEEEEEECCcCHHHHHHcCC
Confidence 544 3456778889999999999999987444 666666654 4567777777655433211
Q ss_pred cCccccCCC-cceeeCCCC
Q 011578 363 SNEGFCRRV-TKFFHFNDF 380 (482)
Q Consensus 363 ~~~~l~~R~-~~~i~~~~~ 380 (482)
-.+.+..|+ ...|.+|++
T Consensus 126 ~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 126 IIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp CCHHHHHHHHHHEEECCCC
T ss_pred CCHHHHHHhcCCEEeCCCC
Confidence 134455565 335777764
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=155.44 Aligned_cols=202 Identities=18% Similarity=0.273 Sum_probs=146.4
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.++|.+.....+.+.+..+ ......++++|++||||+++|++++..... ...|+.++++.+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~--------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r-----~~~fv~vnc~~~ 190 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI--------------AKSKAPVLITGESGTGKEIVARLIHRYSGR-----KGAFVDLNCASI 190 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH--------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCC-----CSCEEEEESSSS
T ss_pred cccccchHHHHHHhhhhhh--------------hccchhheEEeCCCchHHHHHHHHHHhccc-----cCCcEEEEcccC
Confidence 4677776666666554333 124567999999999999999999986643 224999999865
Q ss_pred cc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 287 VG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 287 ~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
.. ..+|+... .....|+.|.+|+||||||+.+.+..| ..|++.++++
T Consensus 191 ~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~ 259 (368)
T 3dzd_A 191 PQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQ-----------AKLLRVLETGSFTRLGGNQK 259 (368)
T ss_dssp CTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHH-----------HHHHHHHHHSEECCBTCCCB
T ss_pred ChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHH-----------HHHHHHHHhCCcccCCCCcc
Confidence 33 23443211 123468889999999999999988555 8888888764
Q ss_pred ---cEEEEEecCchhHHHHHhc--CccccCCCc-ceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
.+.+|++|+.+....+... .+.|..|+. ..|.+|++.. +++..+++.++++.... ++ .....++++++
T Consensus 260 ~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~ 335 (368)
T 3dzd_A 260 IEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKE---YK-KNCFELSEETK 335 (368)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHH---TT-CCCCCBCHHHH
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHH---cC-CCCCCcCHHHH
Confidence 3568888887765543211 245555763 3588999887 89999999999876532 11 22356899999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+..+.| +||.|+++|++++|+...
T Consensus 336 ~~L~~~~w------pGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 336 EYLMKQEW------KGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHTCCC------TTHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCC------CcHHHHHHHHHHHHHHhC
Confidence 99999999 999999999999998653
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=147.74 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=122.6
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC-----------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------- 272 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~----------- 272 (482)
.|++++|++.+.+.+..++. ......+++|+||||+|||++++++++.+.....
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~---------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CHHHhcCCHHHHHHHHHHHh---------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 47789999999888876520 1223345999999999999999999997632110
Q ss_pred -----------CCCCCeEEeecccccccccccchhhHHHHHHh-----------------cCCcEEEEecccccccCCCC
Q 011578 273 -----------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-----------------AEGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 273 -----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------a~~~vl~iDE~d~l~~~~~~ 324 (482)
.....++.++++... ......+++.++. ..+.||+|||++.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~--- 149 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD--- 149 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH---
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH---
Confidence 001123333322210 0010123333332 13469999999997652
Q ss_pred CCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccc
Q 011578 325 DDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL 401 (482)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~ 401 (482)
..+.|+..|+. +..+|+.++..... .|++++|+ ..++|++|+.+++.++++..+.+..
T Consensus 150 --------~~~~L~~~le~~~~~~~~Il~t~~~~~l------~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~---- 210 (354)
T 1sxj_E 150 --------AQAALRRTMEKYSKNIRLIMVCDSMSPI------IAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER---- 210 (354)
T ss_dssp --------HHHHHHHHHHHSTTTEEEEEEESCSCSS------CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT----
T ss_pred --------HHHHHHHHHHhhcCCCEEEEEeCCHHHH------HHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcC----
Confidence 23556665543 44444444443332 67889999 8999999999999999999887542
Q ss_pred cccccccCccc-HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 402 LYGFKLHSSCS-MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 402 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+ .++ ++++..++... .|+.|.+.+.++.+....
T Consensus 211 ---~----~~~~~~~l~~i~~~~-------~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 211 ---I----QLETKDILKRIAQAS-------NGNLRVSLLMLESMALNN 244 (354)
T ss_dssp ---C----EECCSHHHHHHHHHH-------TTCHHHHHHHHTHHHHTT
T ss_pred ---C----CCCcHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhC
Confidence 2 345 67788887655 688899999998887654
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-16 Score=141.20 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=109.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~ 280 (482)
.+++++|.+...+.+.+.+. .....+++|+||||||||++|+++++.+..... ....+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred ccchhhcchHHHHHHHHHHh----------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 46788999987777776521 134668999999999999999999998854211 12345666
Q ss_pred eeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++...+. ..+.|.....+.+++... .+.||||||+|.+.+.+.... ....+.+.|...++.+.+++|++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhcCCeeEEEecCH
Confidence 6665543 224444445555555432 347999999999986543111 11234566667777888889998887
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCC
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFN 381 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~ 381 (482)
.........++++.+||. .+.++.|+
T Consensus 162 ~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 162 SEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 776555556899999996 59999886
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=143.19 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=144.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCC--ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
++++|.+...+.+..++..... ...+. .++|+||||||||++++++++.+.... ...++.+++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~------------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~ 81 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR------------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYING 81 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH------------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEET
T ss_pred CCCCChHHHHHHHHHHHHHHHc------------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeC
Confidence 5689999988888877543310 11233 799999999999999999999875421 236777776
Q ss_pred ccccc------c---cc-------ccchhhH----HHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 284 TDLVG------E---FV-------GHTGPKT----RRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 284 ~~~~~------~---~~-------g~~~~~~----~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
..... . .+ |.....+ ...+... .+.||||||++.+.+ ..+..|+..++
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~-----------~~~~~L~~~~~ 150 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP-----------DILSTFIRLGQ 150 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH-----------HHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch-----------HHHHHHHHHHH
Confidence 54321 0 11 1111122 2222222 347999999999932 45566666665
Q ss_pred C------CcEEEEEecCchhHHHHHhcCccccCCCcc-eeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 343 G------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 343 ~------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
. ..+.+|++++....... .++.+.+||.. .+.|++++.+++.++++..+..... ...+++++
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~--l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---------~~~~~~~~ 219 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---------EGSYSEDI 219 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---------TTSSCHHH
T ss_pred hCCCCCcCCEEEEEEECCchHHHH--hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---------CCCCCHHH
Confidence 3 46677766554433222 36778888854 8999999999999999988764210 13568888
Q ss_pred HHHHHHHHhhHh--hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 416 IAALIEKETTEK--QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 416 l~~~~~~~~~~~--~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
+..+....++.. ....|+.|.+.++++.|...+..+ ....|+.+|+..++..+
T Consensus 220 ~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 220 LQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---------GRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 888888764100 001477788889988887654221 12346666666666554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=154.33 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=100.0
Q ss_pred HHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchh
Q 011578 300 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEP 356 (482)
Q Consensus 300 ~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~ 356 (482)
..+..+.+++|||||++.+.+ .+.+.|++.|+.+ ++.||++|+++.
T Consensus 195 g~~~~a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~ 263 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT 263 (604)
T ss_dssp CHHHHTTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH
T ss_pred ceeeecCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH
Confidence 356678889999999999876 3447777777632 356888887765
Q ss_pred HHHHHhcCccccCCCc---ceeeCCCC---CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc-
Q 011578 357 MKRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR- 429 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~---~~i~~~~~---~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 429 (482)
...+ +|+|++||. ..+.|+.. +.+.+..+++.+.+.... ......++++++..+...+++....
T Consensus 264 ~~~l---~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~ls~eAl~~Li~~~~r~~g~r 334 (604)
T 3k1j_A 264 VDKM---HPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR------DGKIPHFTKEAVEEIVREAQKRAGRK 334 (604)
T ss_dssp HHHS---CHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH------HCSSCCBBHHHHHHHHHHHHHTTCST
T ss_pred Hhhc---CHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh------ccCcccCCHHHHHHHHHHHhhhhccc
Confidence 4444 999999995 46666543 345666676554443221 0123478999999999988632221
Q ss_pred --cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 430 --REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 430 --~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
-..+.|++.++++.|...+..+ ....|+.+|+.+|++.
T Consensus 335 ~~l~~~~R~l~~llr~A~~~A~~~---------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 335 GHLTLRLRDLGGIVRAAGDIAVKK---------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp TEEECCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHhc---------CcccccHHHHHHHHHh
Confidence 1247899999999886654221 2246888888888754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=141.27 Aligned_cols=182 Identities=22% Similarity=0.308 Sum_probs=119.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+...+. .....+++|+||||||||++|+++|+.+.... ....+.+++
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~----------------~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~ 83 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKN--YSNMVLELN 83 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS--HHHHEEEEC
T ss_pred CcHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCC--ccceEEEEc
Confidence 357788999988888876532 12334699999999999999999999885311 011356666
Q ss_pred cccccccccccchhhHHHH---HHh------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRR---IKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIF 350 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~---~~~------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~ 350 (482)
.++..+ ...+++. |.+ ....|++|||+|.+.... .+.|+..++. ...++++
T Consensus 84 ~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 84 ASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA-----------QNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp TTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHTTTTEEEEEE
T ss_pred Cccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhcCCCCeEEEEE
Confidence 554211 1122222 221 125899999999997633 3666666654 3344444
Q ss_pred ecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 351 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
++.... ..|++.+|+ ..+.|++++.+++.+++...+++.. ..++++++..++...
T Consensus 147 ~n~~~~------i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~i~~~~~~~i~~~s------- 201 (340)
T 1sxj_C 147 ANYAHK------LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEKALIELS------- 201 (340)
T ss_dssp ESCGGG------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHHHHHHHH-------
T ss_pred ecCccc------cchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------
Confidence 433322 278899999 5899999999999999998886532 245677777777654
Q ss_pred ccCcchhHHHHHHH
Q 011578 431 EMNGGLVDPMLVNA 444 (482)
Q Consensus 431 ~~~~~~l~~~~~~a 444 (482)
.|+.|.+.++++.+
T Consensus 202 ~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 202 NGDMRRVLNVLQSC 215 (340)
T ss_dssp TTCHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555555443
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-17 Score=135.75 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=91.0
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++|.+...+.+.+.+.... ....+++|+||||||||++|+++++... +|+.++++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~--------------~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA--------------KRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH--------------TCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh--------------CCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhC
Confidence 46788888777777654331 2456899999999999999999997432 7888888876
Q ss_pred cccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHH-HHh
Q 011578 287 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKR-VIA 362 (482)
Q Consensus 287 ~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~-~~~ 362 (482)
...+ ....|+.+.+++|||||+|.+.+..| ..|++.+++ ..+.+|++++.+.... .-
T Consensus 63 ~~~~-------~~~~~~~a~~~~l~lDei~~l~~~~q-----------~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~- 123 (143)
T 3co5_A 63 LIDM-------PMELLQKAEGGVLYVGDIAQYSRNIQ-----------TGITFIIGKAERCRVRVIASCSYAAGSDGIS- 123 (143)
T ss_dssp HHHC-------HHHHHHHTTTSEEEEEECTTCCHHHH-----------HHHHHHHHHHTTTTCEEEEEEEECTTTC--C-
T ss_pred ChHh-------hhhHHHhCCCCeEEEeChHHCCHHHH-----------HHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-
Confidence 5433 56778889999999999999987444 566666654 4577777766543211 00
Q ss_pred cCccccCCC-cceeeCCCC
Q 011578 363 SNEGFCRRV-TKFFHFNDF 380 (482)
Q Consensus 363 ~~~~l~~R~-~~~i~~~~~ 380 (482)
.++.+..|+ ...|.+|++
T Consensus 124 ~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHSSSEEEEECCC
T ss_pred ccHHHHHHhcCcEEeCCCC
Confidence 134556675 446777765
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-15 Score=150.22 Aligned_cols=207 Identities=12% Similarity=0.095 Sum_probs=117.3
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec--
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR-- 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~-- 283 (482)
..++|++.+++.+...+. ...++||+||||||||++|+++|+.+.. ..+|..+.+
T Consensus 22 ~~ivGq~~~i~~l~~al~------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~-----~~~f~~~~~~~ 78 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL------------------SGESVFLLGPPGIAKSLIARRLKFAFQN-----ARAFEYLMTRF 78 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH------------------HTCEEEEECCSSSSHHHHHHHGGGGBSS-----CCEEEEECCTT
T ss_pred hhhHHHHHHHHHHHHHHh------------------cCCeeEeecCchHHHHHHHHHHHHHHhh-----hhHHHHHHHhc
Confidence 358899999887765421 2358999999999999999999986632 223333333
Q ss_pred ---ccccccccccchhhHHHHHHhc------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------
Q 011578 284 ---TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 345 (482)
Q Consensus 284 ---~~~~~~~~g~~~~~~~~~~~~a------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 345 (482)
+++.+.+.+.... -...|..+ ..+|||||||+.+.+ .+.+.|++.|+++.
T Consensus 79 ~t~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~ 146 (500)
T 3nbx_X 79 STPEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEK 146 (500)
T ss_dssp CCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEE
T ss_pred CCHHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCC
Confidence 2333322222111 12233322 235899999998876 45588999987533
Q ss_pred ---EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHHHHHHHHHHhcccccccc------------ccccccC
Q 011578 346 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLL------------YGFKLHS 409 (482)
Q Consensus 346 ---~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~------------~~~~~~~ 409 (482)
.++|+||++-+.. ....+++.+||...+.+|+|+. +++..|++............ .......
T Consensus 147 ~~~~~iI~ATN~lpe~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v 224 (500)
T 3nbx_X 147 IPMRLLVAASNELPEA--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEI 224 (500)
T ss_dssp CCCCEEEEEESSCCCT--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTC
T ss_pred cchhhhhhccccCCCc--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcc
Confidence 2445665421110 0013588999999999999997 77888887654321100000 0000123
Q ss_pred cccHHHHHHHHHHHhh---HhhccccCcchhHHHHHHHHHHhh
Q 011578 410 SCSMDAIAALIEKETT---EKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
.++++.++.++..... .+.....+.|.+..++..|...+.
T Consensus 225 ~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~ 267 (500)
T 3nbx_X 225 TLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAF 267 (500)
T ss_dssp BCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHh
Confidence 4555555555544321 111123456777778777765553
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=125.32 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=87.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCC-----------------CCCeEEeecccccccccccchhhHHHHHHhc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 305 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 305 (482)
+..+||+||||+|||++|+++|+.+....... ...+..+.+.+- +..+ ....++++++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~~--~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNTL--GVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSSB--CHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CCCC--CHHHHHHHHHHH
Confidence 44599999999999999999999886432111 012344433210 0111 123455665543
Q ss_pred -------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec-CchhHHHHHhcCccccCCCccee
Q 011578 306 -------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 306 -------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~-~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
...|++|||+|.+.. .+.+.|+..+++ ..+++|+++ +++. ..|++++|+ ..+
T Consensus 101 ~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep~~~~~~Il~t~~~~~------l~~ti~SRc-~~~ 162 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPER------LLATLRSRC-RLH 162 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGGG------SCHHHHTTS-EEE
T ss_pred hhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeCChHh------CcHHHhhcc-eee
Confidence 348999999999986 445889999987 345555544 3332 278999999 789
Q ss_pred eCCCCCHHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHIK 392 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~ 392 (482)
+|++|+.+++.++++..
T Consensus 163 ~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp ECCCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHh
Confidence 99999999999988765
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=127.28 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=89.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEA 315 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~ 315 (482)
.+++||+||||+|||++|+++|+.+.... .....+..++++. ... +...++++++.+ +..|+||||+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~-~~~~d~~~l~~~~---~~~--~id~ir~li~~~~~~p~~~~~kvviIdea 91 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFP-PKASDVLEIDPEG---ENI--GIDDIRTIKDFLNYSPELYTRKYVIVHDC 91 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSC-CCTTTEEEECCSS---SCB--CHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhh-ccCCCEEEEcCCc---CCC--CHHHHHHHHHHHhhccccCCceEEEeccH
Confidence 46899999999999999999999754211 1234667776542 111 122355665543 2379999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec-CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~-~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
|.+.. .+.+.|+..|++ ...++|+++ ++.. + .|++++| +++|++|+.+++.+.++..
T Consensus 92 d~lt~-----------~a~naLLk~LEep~~~t~fIl~t~~~~k---l---~~tI~SR---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 92 ERMTQ-----------QAANAFLKALEEPPEYAVIVLNTRRWHY---L---LPTIKSR---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp GGBCH-----------HHHHHTHHHHHSCCTTEEEEEEESCGGG---S---CHHHHTT---SEEEECCCCHHHHHHHHHH
T ss_pred HHhCH-----------HHHHHHHHHHhCCCCCeEEEEEECChHh---C---hHHHHce---eEeCCCCCHHHHHHHHHHH
Confidence 99986 445899999987 344555543 4332 2 7899999 9999999999999999877
Q ss_pred H
Q 011578 393 M 393 (482)
Q Consensus 393 l 393 (482)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-12 Score=125.28 Aligned_cols=218 Identities=12% Similarity=0.074 Sum_probs=126.5
Q ss_pred hhhhchHHHHHHHHHHH-HHHhHHHHHHHcCCCCCCCCCCceeE--ecCCCCchHHHHHHHHHHHHHcC--CCCCCCeEE
Q 011578 206 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAF--LGNPGTGKTMVARILGRLLYMVG--ILPTDRVTE 280 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll--~GppGtGKT~la~~la~~~~~~~--~~~~~~~~~ 280 (482)
+.++|.+...+.+.+.+ ..... + . ...+..+++ +||||+|||++++.+++.+.... ......++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~--~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------G--A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------S--S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------C--C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 45788888888787764 33210 0 0 024557889 99999999999999999875420 001124556
Q ss_pred eecccc------ccc---ccc-------cchh----hHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 281 VQRTDL------VGE---FVG-------HTGP----KTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 281 ~~~~~~------~~~---~~g-------~~~~----~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
+++... ... .+| .+.. .+.+.+.. .++.||+|||++.+...+. . ...++..|+.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~---~~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--I---AAEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--S---CHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--c---chHHHHHHHH
Confidence 664321 111 111 1111 12223332 2357999999999975311 0 1134444444
Q ss_pred hhc-----C--CcEEEEEecCchhHH-HHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 340 VMD-----G--GKVVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 340 ~l~-----~--~~~~vi~~~~~~~~~-~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.++ + ..+.+|++++...+. .+....+.+.+|+...+.|++++.++..++++..+.... ....+
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~---------~~~~~ 237 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL---------RDTVW 237 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB---------CTTSC
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC---------CCCCC
Confidence 443 3 567777776433332 221112666777766699999999999999988776421 11245
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++.+..+...... .....|+.+.+.+++..+...+
T Consensus 238 ~~~~~~~i~~~~~~-~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 238 EPRHLELISDVYGE-DKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp CHHHHHHHHHHHCG-GGTSCCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHHHHH
Confidence 77777777765520 0000177788888887776543
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.4e-12 Score=123.29 Aligned_cols=238 Identities=17% Similarity=0.121 Sum_probs=136.3
Q ss_pred hHHHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHH-HHHHHHcCCCCC
Q 011578 197 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL-GRLLYMVGILPT 275 (482)
Q Consensus 197 ~~~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~l-a~~~~~~~~~~~ 275 (482)
..+.+...+..|.|++.+|..+.-.+.. +. -......|+|+.|+||| ||++|+++ ++.+..
T Consensus 204 ~~~~l~~sIapI~G~e~vK~aLll~L~G----------G~-~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR------ 265 (506)
T 3f8t_A 204 PLTTFARAIAPLPGAEEVGKMLALQLFS----------CV-GKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR------ 265 (506)
T ss_dssp HHHHHHHHHCCSTTCHHHHHHHHHHHTT----------CC-SSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHcC----------Cc-cccCCceeEEEECCCCh-HHHHHHHHHHHhCCC------
Confidence 3445566666699999988877644200 00 00112348999999999 99999999 764421
Q ss_pred CCeEEeecc---cccccccccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc------
Q 011578 276 DRVTEVQRT---DLVGEFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------ 345 (482)
Q Consensus 276 ~~~~~~~~~---~~~~~~~g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 345 (482)
..|.....+ .+.....+.++ ..-...+..|.++|+||||++.+.+ .....|++.|+++.
T Consensus 266 ~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~ 334 (506)
T 3f8t_A 266 GVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGI 334 (506)
T ss_dssp EEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTE
T ss_pred eEEecCCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCE
Confidence 111111111 11111000011 1112456678899999999999987 44489999998754
Q ss_pred -----EEEEEecCchhHH------HHHhcCccccCCCcceee-CCCCCHHHH---------HHHHHHHHhcccccccccc
Q 011578 346 -----VVVIFAGYSEPMK------RVIASNEGFCRRVTKFFH-FNDFNSEEL---------AKILHIKMNNQTEDSLLYG 404 (482)
Q Consensus 346 -----~~vi~~~~~~~~~------~~~~~~~~l~~R~~~~i~-~~~~~~~~~---------~~il~~~l~~~~~~~~~~~ 404 (482)
+.||+|+++.+.. .-....+++++|||..+. .+.|+.++- .+.++.++.... .
T Consensus 335 ~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar------~ 408 (506)
T 3f8t_A 335 ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAI------R 408 (506)
T ss_dssp EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHH------H
T ss_pred EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHH------h
Confidence 5677776665411 011346889999987554 455544321 122222222110 0
Q ss_pred ccccCcccHHHHHHHHHHHhhHhh-----------ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHH
Q 011578 405 FKLHSSCSMDAIAALIEKETTEKQ-----------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 473 (482)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a 473 (482)
..+.+.+++++...+...+...+. ..+...|.+..++..|...+..+.. ..++.+|+.+|
T Consensus 409 ~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR---------~~V~~eDV~~A 479 (506)
T 3f8t_A 409 EHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLS---------DDVEPEDVDIA 479 (506)
T ss_dssp HCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTC---------SEECHHHHHHH
T ss_pred cCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCc---------CCCCHHHHHHH
Confidence 123467788877777765543221 1234558888888887777654433 47999999999
Q ss_pred HHHHH
Q 011578 474 LKLLL 478 (482)
Q Consensus 474 l~~~~ 478 (482)
+.-+.
T Consensus 480 i~L~~ 484 (506)
T 3f8t_A 480 AELVD 484 (506)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=121.33 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=94.4
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHH----------HHcC----------CC-----CC-CCCCCc--eeEec
Q 011578 199 DELENELSNIVGLHELKIQLRKWAKGMLLDERR----------KALG----------LK-----VG-ARRPPH--MAFLG 250 (482)
Q Consensus 199 ~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~----------~~~~----------~~-----~~-~~~~~~--~ll~G 250 (482)
......|+++.|.+.+|..+.+.+.+. ..+ .+.+ .. ++ -..|.+ +++||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G 1089 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQ---IEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 1089 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHH---HHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEEC
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHH---HhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEc
Confidence 345578999999999999987764433 322 1111 11 11 113444 99999
Q ss_pred CCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc------------cccccc----chhhHHHHHHh---cCCcEEE
Q 011578 251 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV------------GEFVGH----TGPKTRRRIKE---AEGGILF 311 (482)
Q Consensus 251 ppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~------------~~~~g~----~~~~~~~~~~~---a~~~vl~ 311 (482)
|||||||++|++++.+.... ..+.+.++..... .+|+++ +++.++.+|.. ...++||
T Consensus 1090 ~~g~GKT~la~~~~~~~~~~----g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~ 1165 (1706)
T 3cmw_A 1090 PESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 1165 (1706)
T ss_dssp STTSSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCCChHHHHHHHHHHhhhc----CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999988764 2344444544422 677888 78888888874 4569999
Q ss_pred EecccccccCCC-----CC-CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 312 VDEAYRLIPMQK-----AD-DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 312 iDE~d~l~~~~~-----~~-~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
+||++.|.|.+. ++ +.....+++++++..|+. ..++||+++
T Consensus 1166 ~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n 1216 (1706)
T 3cmw_A 1166 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1216 (1706)
T ss_dssp ESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEec
Confidence 999999999842 11 124456789999999987 788887665
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=128.83 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=86.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh------------------c
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE------------------A 305 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------a 305 (482)
.++||+||||||||++|+.+.... ....++.++.+...+ ...+.+.++. .
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~------~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS------SLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC------SSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC------CCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCC
Confidence 578999999999999995554322 122556666554332 1223333321 1
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh---hcC--------CcEEEEEecCchhHHHHHhcCccccCCCcce
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~---l~~--------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
+.+||||||++.....+. +.....+++.++++. .+. .++.+|+|+++..---....+|+|.||| .+
T Consensus 1336 k~~VlFiDEinmp~~d~y--g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~v 1412 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKY--GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AI 1412 (2695)
T ss_dssp SCEEEEEETTTCSCCCSS--SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EE
T ss_pred ceEEEEeccccccccccc--CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eE
Confidence 126999999997554432 233344555665542 111 1367888876542000011289999999 89
Q ss_pred eeCCCCCHHHHHHHHHHHHhcc
Q 011578 375 FHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~ 396 (482)
+.++.|+.+++..|+..++...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999888653
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-08 Score=93.76 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
+.++|.+...+.+.+.+.. ...++++||+|+|||++++.+++..+ ++.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~---------~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN------------------YPLTLLLGIRRVGKSSLLRAFLNERP---------GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH------------------CSEEEEECCTTSSHHHHHHHHHHHSS---------EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhc------------------CCeEEEECCCcCCHHHHHHHHHHHcC---------cEEEEeec
Confidence 3578888877777765320 15799999999999999999998641 33333221
Q ss_pred cc------------c---ccccc---------------------chhhHHHH---HHh----cCCcEEEEecccccccCC
Q 011578 286 LV------------G---EFVGH---------------------TGPKTRRR---IKE----AEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 286 ~~------------~---~~~g~---------------------~~~~~~~~---~~~----a~~~vl~iDE~d~l~~~~ 322 (482)
.. . ..++. ......++ +.. ..+.||+|||++.+....
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~ 144 (350)
T 2qen_A 65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG 144 (350)
T ss_dssp HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC
Confidence 10 0 00000 00112222 221 137899999999987511
Q ss_pred CCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhH-HHH---HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 323 KADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
. .... ..+..|...++. ..+.+|+++..... ..+ .....++.+|+...+.+++++.++..++++..+..
T Consensus 145 ~-~~~~---~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 145 S-RGGK---ELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp T-TTTH---HHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred c-cchh---hHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 0 0011 222333333332 46666776655443 333 12234566677679999999999999999877654
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=98.66 Aligned_cols=160 Identities=9% Similarity=-0.049 Sum_probs=109.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEec
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDE 314 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE 314 (482)
..+.++|+||+|.||++.++.+++.+...+... ...+.++ | ...++++++. +...|++|||
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~---------~--~~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-HHTFSID---------P--NTDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE-EEEEECC---------T--TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe-eEEEEec---------C--CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 346799999999999999999999876432110 0111121 1 1223444433 2458999999
Q ss_pred ccc-cccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhH---HHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 315 AYR-LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPM---KRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 315 ~d~-l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~---~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
++. +.... .+.|+..+++ +.++|+.+++.++. ..+ .+++.+|+ .+++|.+++.+++..
T Consensus 85 ~~~kl~~~~-----------~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~---~~~i~sr~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 85 PENGPNAAI-----------NEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAW---FTALANRS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CSSCCCTTH-----------HHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHH---HHHHTTTC-EEEEECCCCTTHHHH
T ss_pred CCCCCChHH-----------HHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHH---HHHHHhCc-eEEEeeCCCHHHHHH
Confidence 998 76533 3778877776 55666666553321 122 46678888 789999999999999
Q ss_pred HHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 388 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 388 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.++..+++.. ..++++++..++... .++.+.+.+.++....
T Consensus 150 ~l~~~~~~~g-----------~~i~~~a~~~l~~~~-------~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 150 WVAARAKQLN-----------LELDDAANQVLCYCY-------EGNLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHHHTT-----------CEECHHHHHHHHHSS-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----------CCCCHHHHHHHHHHh-------chHHHHHHHHHHHHHH
Confidence 9999887653 356788888888754 5677778887777654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.7e-09 Score=91.08 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=57.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccccch-hhHHHHHHh-cCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKE-AEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-a~~~vl~iDE~d~l 318 (482)
....++|+||||||||++++++++.+. ..+. .++.++..++...+..... ......++. ....+|+|||++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI----RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC----CCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 456899999999999999999999886 3232 3344555544333211000 000012221 25689999999854
Q ss_pred ccCCCCCCChhHHHHHHHHHhhhc-CCcEEEEEecC
Q 011578 319 IPMQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGY 353 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~vi~~~~ 353 (482)
.. +......+..++.... .+..+++.++.
T Consensus 113 ~~------~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 113 RL------SDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CC------CHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cC------CHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22 2333445555555443 45555555543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-09 Score=92.55 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=46.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc----chhhHHHHHHhcCCcEEEEeccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL 318 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~a~~~vl~iDE~d~l 318 (482)
+.+++|+||||||||++|+++++.+...+ .+++.++++++...+... ......+.+. ...+|||||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRN----VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTT----CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 37899999999999999999999886432 356667766554432211 1111222233 2369999999765
Q ss_pred cc
Q 011578 319 IP 320 (482)
Q Consensus 319 ~~ 320 (482)
..
T Consensus 128 ~~ 129 (202)
T 2w58_A 128 AM 129 (202)
T ss_dssp --
T ss_pred cC
Confidence 43
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-09 Score=89.40 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
....++|+||+|+|||++++++++.+...+ ...+.++..++... . | .....+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g----~~~~~~~~~~~~~~----------~-~-~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG----KNAAYIDAASMPLT----------D-A-AFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT----CCEEEEETTTSCCC----------G-G-GGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEcHHHhhHH----------H-H-HhCCCEEEEeCccccCh
Confidence 345799999999999999999999886422 24666666655433 0 1 12468999999988654
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-08 Score=85.94 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++|+||||||||++|.++|+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999874
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-07 Score=88.54 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=81.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc-----c---------------------------cccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-----V---------------------------GEFV 291 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-----~---------------------------~~~~ 291 (482)
..++++||+|+|||++++.+++.+.. .++.+++... . ....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 103 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQ 103 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTST
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccc
Confidence 47999999999999999999987642 2333443221 0 0000
Q ss_pred c----c----------chhhHHHH---HHhc--CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 292 G----H----------TGPKTRRR---IKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 292 g----~----------~~~~~~~~---~~~a--~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
| . ....+.++ +... .+.||+|||++.+..... .+. ...+..+.+.. ..+.+|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~---~~~-~~~l~~~~~~~--~~~~~i~~g 177 (357)
T 2fna_A 104 GIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG---VNL-LPALAYAYDNL--KRIKFIMSG 177 (357)
T ss_dssp TEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT---CCC-HHHHHHHHHHC--TTEEEEEEE
T ss_pred eEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc---hhH-HHHHHHHHHcC--CCeEEEEEc
Confidence 0 0 01122233 3332 367999999999875211 111 12233333221 356666666
Q ss_pred CchhH-HHH---HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHh
Q 011578 353 YSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN 394 (482)
Q Consensus 353 ~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 394 (482)
..... ..+ .....++.+|+...+.+++++.++..++++..+.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 65442 332 1223456667778999999999999999988765
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.4e-08 Score=85.80 Aligned_cols=128 Identities=19% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCC-CCC-CCeEEeeccccccccc----------c---c--chhhHHHHH--H
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPT-DRVTEVQRTDLVGEFV----------G---H--TGPKTRRRI--K 303 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~-~~~-~~~~~~~~~~~~~~~~----------g---~--~~~~~~~~~--~ 303 (482)
+.-.+++|+||||||++|..++........ ... .+++..+..++....+ . + ......+.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346889999999999999886544321011 111 2333344343332221 1 1 112333333 2
Q ss_pred hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCC
Q 011578 304 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF 380 (482)
Q Consensus 304 ~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~ 380 (482)
..+++||+|||++.+.+.+...... ..++..++. ..+-+|++|.+.. . .+.++++|++..++++++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r~~~~~iil~tq~~~--~---l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHRHQGIDIFVLTQGPK--L---LDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTTTTTCEEEEEESCGG--G---BCHHHHTTEEEEEEEEEC
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcCcCCeEEEEECCCHH--H---HhHHHHHHhheEEEEcCc
Confidence 3347999999999997755321111 134455543 2234444444421 1 267789999999998875
Q ss_pred C
Q 011578 381 N 381 (482)
Q Consensus 381 ~ 381 (482)
.
T Consensus 154 ~ 154 (199)
T 2r2a_A 154 K 154 (199)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-08 Score=92.63 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=46.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccccc-hhhHHHHHHh-cCCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHT-GPKTRRRIKE-AEGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-a~~~vl~iDE~d~l~ 319 (482)
..+++|+||||||||++|+++|+.+. ..+. +++.++.+++...+.+.. .....+.+.. ....||||||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~----~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV----STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC----CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC----cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 57899999999999999999999987 6442 566666666544332210 0011111111 234799999997654
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-07 Score=86.77 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=57.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHH---HHHHhcCCcEEEEeccccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~a~~~vl~iDE~d~l~~ 320 (482)
..++++||||||||++|..+|...+. ...|+.....+.+..+..+.+..+. +.+.... +|||||++.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45799999999999999999987322 1235554222222222223333333 3333333 999999999976
Q ss_pred CCCCCC-----ChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 321 MQKADD-----KDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 321 ~~~~~~-----~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
....++ .....+.+..|...+....++++++++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 443211 123445566666665554556666654
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-07 Score=83.87 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++|+||||||||++|++||+.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3579999999999999999999864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=74.20 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.|.||+|+||||+++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.1e-07 Score=68.13 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=62.0
Q ss_pred eCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCC
Q 011578 376 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD 455 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~ 455 (482)
.-.+||.++|.+||+.++++.. +..+++.+.|++.+. +..|++|.+++.+|...+..+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~---------l~~dvdl~~LA~~T~---------G~SGADL~~l~~eAa~~alr~~--- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMN---------LTRGINLRKIAELMP---------GASGAEVKGVCTEAGMYALRER--- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSE---------ECTTCCCHHHHHTCS---------SCCHHHHHHHHHHHHHHHHHTT---
T ss_pred CCCCcCHHHHHHHHHHHHcCCC---------CCcccCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHHc---
Confidence 3478999999999999998653 445677777777666 4568899999999988775543
Q ss_pred CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 456 CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 456 ~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|+.+||.+|+++++|-
T Consensus 66 ------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ------CSEECHHHHHHHHHHHHCC
T ss_pred ------CCCCCHHHHHHHHHHHccC
Confidence 2579999999999999884
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-06 Score=100.99 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=81.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc--CCcEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~vl~iDE~d~l~~~ 321 (482)
.+.++.||+|||||++++.+|+.++. +++.+++++-... ..+..+|..+ .|+.++|||++++.+.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~-------~~v~~nc~e~ld~------~~lg~~~~g~~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGR-------VVVVFNCDDSFDY------QVLSRLLVGITQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTC-------CCEEEETTSSCCH------HHHHHHHHHHHHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCC-------cEEEEECCCCCCh------hHhhHHHHHHHhcCCEeeehhhhhcChH
Confidence 35689999999999999999998887 8888998864321 2334455433 4689999999998762
Q ss_pred CCCCCChhHHHHHHHHHhhhcC--------C-------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDG--------G-------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~--------~-------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
.. ......+..+...+.+ | ...+++|.++. ..-.-...+++++|| +.+.+..||.+.+.
T Consensus 713 vL----s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg-y~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 713 VL----SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG-YNGRSELPENLKKSF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp HH----HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC-SSSSCCCCHHHHTTE-EEEECCCCCHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC-ccCcccccHHHHhhe-EEEEeeCCCHHHHH
Confidence 11 0000111122233321 1 12344444332 111111257788899 78999999999988
Q ss_pred HHHHH
Q 011578 387 KILHI 391 (482)
Q Consensus 387 ~il~~ 391 (482)
+|+-.
T Consensus 787 ei~l~ 791 (2695)
T 4akg_A 787 EMILQ 791 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88643
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.3e-07 Score=65.09 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCC
Q 011578 378 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL 457 (482)
Q Consensus 378 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~ 457 (482)
|.|+.++|.+||+.++++.. +..+++.+.|+..+.+ ..|++|.+++..|...+..+
T Consensus 1 plPd~~~R~~Il~~~l~~~~---------~~~~~dl~~la~~t~G---------~SGADi~~l~~eA~~~a~~~------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN---------LTRGINLRKIAELMPG---------ASGAEVKGVCTEAGMYALRE------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE---------ECTTCCHHHHHHTCTT---------CCHHHHHHHHHHHHHHHHHT------
T ss_pred CcCCHHHHHHHHHHHhcCCC---------CCCccCHHHHHHHcCC---------CCHHHHHHHHHHHHHHHHHh------
Confidence 68999999999999998653 4467777777776664 45889999999998887544
Q ss_pred ChhhhhcccHHHHHHHHHHHHhc
Q 011578 458 DTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 458 ~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
....|+.+||..|++++...
T Consensus 57 ---~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 57 ---RRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp ---TCSEECHHHHHHHHHHHHC-
T ss_pred ---CCCCCCHHHHHHHHHHHHhc
Confidence 23579999999999998764
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.8e-06 Score=99.03 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=79.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh---------------c--
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---------------A-- 305 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------a-- 305 (482)
..++||+||||||||++++.....+ ...+++.++.+.-.. ...+.+.++. +
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l------~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~ 1371 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAF------PDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQ 1371 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGC------TTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC------CCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCc
Confidence 4679999999999998765443222 112455566554321 1122222221 1
Q ss_pred --CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh---hcC--------CcEEEEEecCchhHHHHHhcCccccCCCc
Q 011578 306 --EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVT 372 (482)
Q Consensus 306 --~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~---l~~--------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~ 372 (482)
+..|+||||++.-.+... +.....+++.++++. .+. ..+.+|+|.++...--....+|+|.+||
T Consensus 1372 ~Gk~~VlFiDDiNmp~~D~y--GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F- 1448 (3245)
T 3vkg_A 1372 LGKWLVVFCDEINLPSTDKY--GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA- 1448 (3245)
T ss_dssp TTCEEEEEETTTTCCCCCTT--SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-
T ss_pred CCceEEEEecccCCCCcccc--ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-
Confidence 125999999987554322 222223444444432 111 2345666654431000112278999999
Q ss_pred ceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 373 KFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 373 ~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
.++.++.|+.+++..|+..++...
T Consensus 1449 ~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 779999999999999988776543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.3e-06 Score=93.82 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccc------------cchhh---HHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVG------------HTGPK---TRR 300 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~g------------~~~~~---~~~ 300 (482)
..+...++|+||||||||++|.+++.+....+. ....++..... .+..| ..+.. ++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~----~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH
Confidence 346678999999999999999999998765332 33444433221 22223 12222 333
Q ss_pred HHHhcCCcEEEEecccccccCCC---C-CCChh--HHHHHHHHHhhhc----CCcEEEEEec
Q 011578 301 RIKEAEGGILFVDEAYRLIPMQK---A-DDKDY--GIEALEEIMSVMD----GGKVVVIFAG 352 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~~~~---~-~~~~~--~~~~~~~ll~~l~----~~~~~vi~~~ 352 (482)
..++....+|||||++.+.+... . +++.. ..+++++++..|. ...+++|+++
T Consensus 1500 lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 44556779999999999987431 1 11122 3455555555554 4667777765
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.5e-06 Score=74.33 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=21.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.-.+++||+|+||||++..++..+...+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g 31 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK 31 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3578999999999999977777664433
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=9e-06 Score=61.17 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChh
Q 011578 381 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD 460 (482)
Q Consensus 381 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~ 460 (482)
|.++|.+||+.++++.. +..+++.+.|+..+.+ ..|++|.+++.+|...+..+.
T Consensus 2 d~~~R~~Il~~~~~~~~---------~~~dvdl~~lA~~t~G---------~SGADl~~l~~eAa~~a~r~~-------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMS---------VERGIRWELISRLCPN---------STGAELRSVCTEAGMFAIRAR-------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSC---------BCSCCCHHHHHHTCSS---------CCHHHHHHHHHHHHHHHHHHS--------
T ss_pred CHHHHHHHHHHHHCCCC---------CCCccCHHHHHHHcCC---------CcHHHHHHHHHHHHHHHHHhc--------
Confidence 56899999999998753 4567787777776664 558999999999988775542
Q ss_pred hhhcccHHHHHHHHHHHHh
Q 011578 461 ELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 461 ~~~~i~~~d~~~al~~~~~ 479 (482)
...|+.+||.+|++++.+
T Consensus 56 -~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 56 -RKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp -CSSBCHHHHHHHHHHHTC
T ss_pred -cccCCHHHHHHHHHHHhc
Confidence 246999999999999876
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00013 Score=71.71 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=99.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----------ccccc---------cch-hhHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----------GEFVG---------HTG-PKTRRR 301 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g---------~~~-~~~~~~ 301 (482)
++..+++.||+|+||||++..||..+...+. .+.-+.+.... ....| ... ......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~----kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY----KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC----CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHH
Confidence 3556889999999999999999998876442 33333322110 01111 111 112344
Q ss_pred HHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec-CchhHHHHHhcCccccCCC-cceee
Q 011578 302 IKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRV-TKFFH 376 (482)
Q Consensus 302 ~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~-~~~~~~~~~~~~~~l~~R~-~~~i~ 376 (482)
+..+. .-+|+||+...+... .+......+..+...+....+++++-+ +........ ..+...+ ...+-
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~----~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~~~~~gVI 244 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYG----EETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQASPIGSVI 244 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSC----CTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHHCSSEEEE
T ss_pred HHHHHhcCCCEEEEECCCCcccc----CCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcccCCcEEE
Confidence 55543 479999998655410 112222334445555555555555543 322221111 1111111 02233
Q ss_pred CCCCCH----HHHHHHHHHHHhcccccccccccccc--CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 377 FNDFNS----EELAKILHIKMNNQTEDSLLYGFKLH--SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 377 ~~~~~~----~~~~~il~~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
+...|. .....+.... ..+-.....|-.++ ..++++.+....- ...++..+++.|.+....
T Consensus 245 lTKlD~~a~~G~als~~~~~--g~Pi~fig~Ge~v~dL~~f~p~~~~~~ll-----------g~gd~~~l~e~~~~~~~~ 311 (433)
T 3kl4_A 245 ITKMDGTAKGGGALSAVVAT--GATIKFIGTGEKIDELETFNAKRFVSRIL-----------GMGDIESILEKVKGLEEY 311 (433)
T ss_dssp EECGGGCSCHHHHHHHHHHH--TCEEEEEECCSSSSCEEECCHHHHHHHHH-----------CSSHHHHHHHHHHHC---
T ss_pred EecccccccchHHHHHHHHH--CCCEEEEECCCChHhCccCCHHHHHHHhc-----------CCchHHHHHHHHHHhhhH
Confidence 344443 2233333321 11111111122221 2344444444332 234778888887765321
Q ss_pred hhcCCCCCh-hhhh-cccHHHHHHHHHHHHhcC
Q 011578 451 RLSFDCLDT-DELR-TITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 451 r~~~~~~~~-~~~~-~i~~~d~~~al~~~~~~~ 481 (482)
.-..+.... .... .+|.+||.+.++.+++.|
T Consensus 312 ~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 312 DKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp ----------------CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 110001111 1122 699999999999999987
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=9.4e-06 Score=60.45 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCCh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT 459 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~ 459 (482)
+|.++|.+||+.++++.. +..+++.+.++..+. +..|++|.+++..|...+..+.
T Consensus 1 ~d~~~R~~Il~~~l~~~~---------~~~~vdl~~la~~t~---------G~SGADi~~l~~eA~~~a~~~~------- 55 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMN---------LSEEVDLEDYVARPD---------KISGADINSICQESGMLAVREN------- 55 (83)
T ss_dssp CCHHHHHHHHHHHHTTSC---------BCTTCCTHHHHTSSC---------CCCHHHHHHHHHHHHHGGGTSC-------
T ss_pred CCHHHHHHHHHHHhCCCC---------CCcccCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhc-------
Confidence 478999999999998653 345667676766655 4568999999999988774442
Q ss_pred hhhhcccHHHHHHHHHHHHhc
Q 011578 460 DELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 460 ~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|+.+||..|+++++|.
T Consensus 56 --~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 56 --RYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp --CSSBCHHHHHHHHHHHCC-
T ss_pred --cCCcCHHHHHHHHHHHccC
Confidence 2579999999999999885
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00067 Score=66.71 Aligned_cols=215 Identities=16% Similarity=0.135 Sum_probs=103.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-------------------ccccccc-hhhHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-------------------GEFVGHT-GPKTRRR 301 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~g~~-~~~~~~~ 301 (482)
++..+++.||+|+||||++..||..+...+. .+.-+++.... ....+.. ...+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~----kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~a 174 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGY----KVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEG 174 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCC----eEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH
Confidence 4567889999999999999999998875442 33333332110 0011111 1223444
Q ss_pred HHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccCCCcc-eee
Q 011578 302 IKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVTK-FFH 376 (482)
Q Consensus 302 ~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~-~i~ 376 (482)
++.+ ..-+++||.+..+.. +......+..+........+++|+ +++........ ..+...++. -+-
T Consensus 175 l~~a~~~~~DvVIIDTaGrl~~------d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~~~i~gVI 245 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAGRHKE------DKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEATPIGSII 245 (443)
T ss_dssp HHHHHHTTCSEEEEECCCCSSC------CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHSCTTEEEE
T ss_pred HHHHHhCCCCEEEEECCCcccc------hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhhCCCeEEE
Confidence 4443 257999998865542 122223344455555555555555 43322222111 112222211 233
Q ss_pred CCCCCHHHHHHHHHHHHhccccccc--ccccccc--CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 377 FNDFNSEELAKILHIKMNNQTEDSL--LYGFKLH--SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 377 ~~~~~~~~~~~il~~~l~~~~~~~~--~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
+...|...+...+............ ..|..++ ..++++.+....- ...++..+++.|.+.....-
T Consensus 246 lTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~ll-----------g~gd~~~l~e~~~~~~~~~~ 314 (443)
T 3dm5_A 246 VTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL-----------GLGDIQGLLEKFKELEKEVE 314 (443)
T ss_dssp EECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHT-----------TTTCHHHHHHHHHHHHTTHH
T ss_pred EECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHc-----------CCCcHHHHHHHHHHhhhhhH
Confidence 4444443332222222222211111 1122221 1234443333322 24578888888876542110
Q ss_pred --cCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 453 --SFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 453 --~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
. +....-..-.+|.+||.+-++.+++.|
T Consensus 315 ~~~-~~~~k~~~~~f~l~d~~~q~~~~~kmg 344 (443)
T 3dm5_A 315 IKE-EDIERFLRGKFTLKDMYAQLEAMRKMG 344 (443)
T ss_dssp HHH-HHHHHHHTTCCCHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHhhCCcCHHHHHHHHHHHHhcc
Confidence 0 000000112699999999999999887
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.3e-05 Score=92.02 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=79.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEecccccccCC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~~~ 322 (482)
+..+.||+|||||.+++.+|+.++. +++.+++++-... ..+.++|.- ..|+...||||+++..
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr-------~~~vfnC~~~~d~------~~~g~i~~G~~~~GaW~cfDEfNrl~~-- 670 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGR-------FVLVFCCDEGFDL------QAMSRIFVGLCQCGAWGCFDEFNRLEE-- 670 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEECSSCCCH------HHHHHHHHHHHHHTCEEEEETTTSSCH--
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCC-------eEEEEeCCCCCCH------HHHHHHHhhHhhcCcEEEehhhhcCCH--
Confidence 4478899999999999999999987 8888888764322 122333332 2478899999999865
Q ss_pred CCCCChhHHHHHHHHHhhhc-----------------CC------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 323 KADDKDYGIEALEEIMSVMD-----------------GG------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~-----------------~~------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
++++.+.+++. +. ...+++|.++ .+.-.-+.++.++.|| +.+.++.
T Consensus 671 ---------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lF-r~v~m~~ 739 (3245)
T 3vkg_A 671 ---------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLF-RSMAMIK 739 (3245)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTE-EEEECCS
T ss_pred ---------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhc-EEEEEeC
Confidence 44444433332 21 2344555443 1211112367788899 8899999
Q ss_pred CCHHHHHHHHH
Q 011578 380 FNSEELAKILH 390 (482)
Q Consensus 380 ~~~~~~~~il~ 390 (482)
||.+.+.+|+-
T Consensus 740 Pd~~~i~ei~L 750 (3245)
T 3vkg_A 740 PDREMIAQVML 750 (3245)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988864
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=72.77 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=56.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccccchhhHHHHHHh---------------
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGHTGPKTRRRIKE--------------- 304 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~--------------- 304 (482)
..+++.||||||||+++.+++..+...+. ..++.+.++.... ..+|.....+...+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~ 122 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE---TGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKE 122 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC---ceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccc
Confidence 38999999999999999999999876443 2344444432211 1122222223333321
Q ss_pred ----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEE
Q 011578 305 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIF 350 (482)
Q Consensus 305 ----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~ 350 (482)
....+|+|||+..+.. ..+..|+..+..+. +++++
T Consensus 123 ~~~~~~~~~iiiDE~~~~~~-----------~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 123 VPDLAKCRVLICDEVSMYDR-----------KLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CCCCSSCSEEEESCGGGCCH-----------HHHHHHHHHSCTTCEEEEEE
T ss_pred cccccCCCEEEEECchhCCH-----------HHHHHHHHhccCCCEEEEEC
Confidence 1347999999988765 44567777776444 33333
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=5.5e-05 Score=77.76 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=57.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccccchhhHHHHHHhc------------C
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGHTGPKTRRRIKEA------------E 306 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~a------------~ 306 (482)
...+++.||||||||+++.+++..+...+. .++.+.++.-.. +..|.....+...+... .
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~----~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~ 279 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGL----EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAP 279 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTC----CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC----eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhccccc
Confidence 457899999999999999999998876442 445444432211 11222223333333211 2
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEE
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIF 350 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~ 350 (482)
..+|+|||+..+.. ..+..|+..+..+. +++++
T Consensus 280 ~dvlIIDEasml~~-----------~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 280 YDLLIVDEVSMMGD-----------ALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp CSEEEECCGGGCCH-----------HHHHHHHTTSCTTCEEEEEE
T ss_pred CCEEEEcCccCCCH-----------HHHHHHHHhCcCCCEEEEEe
Confidence 37999999988865 45577777776554 44433
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00048 Score=63.05 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=63.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
.+++.||||+||||+|+.||+.++. .++..+....... .++.... ..+ +.+.-.-.|+|+.+-... .
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~-------~~i~~D~~~~~~~~~~~t~~~-~~~--e~~~~~~~~~~~~~~~~~--~ 70 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW-------PVVALDRVQCCPQIATGSGRP-LES--ELQSTRRIYLDSRPLTEG--I 70 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC-------CEEECCSGGGCGGGTTTTTCC-CGG--GGTTCCEECSCCCCGGGC--S
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC-------eEEeccHHhccCCCccccCCC-CHH--HHhCCCeEEEeeeccccc--c
Confidence 4789999999999999999998754 5554433211111 1111000 000 111223466665432110 0
Q ss_pred CCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHH
Q 011578 324 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~ 391 (482)
.+...+...+.+.+ +.+..+..+|+..++...+..++.. ..+..+++ ..+.+..|..+.+.+-+..
T Consensus 71 ~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~~e~l~~Rl~~ 137 (253)
T 2ze6_A 71 LDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKS-PFWRSGFQWHVKRLRLGDSDAFLTRAKQ 137 (253)
T ss_dssp CCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHC-TTTTSSCEEEEEECCCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhc-ccccccCceEEEEecchhHHHHHHHHHH
Confidence 11123333444555 6666666655555444333333221 11112333 4666777774555444433
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=97.66 E-value=6.2e-05 Score=70.91 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=54.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
..+++.||+|+|||++|+.||+.++. .++..+....... .+| +.+...+..... .-.|+|..+-...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~-------~iis~Ds~qvy~~~~ig-Takp~~~e~~gv--ph~lid~~~~~~~-- 73 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC-------ELISVDSALIYRGMDIG-TAKPSRELLARY--PHRLIDIRDPAES-- 73 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE-------EEEEECTTTTBTTCCTT-TTCCCHHHHHHS--CEETSSCBCTTSC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC-------cEEeccchhhhcCCCcc-cCCCCHHHHcCC--CEEEeeccCcccc--
Confidence 36889999999999999999997753 5555543322211 111 222222222222 2366776654321
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
.+..++...+...+-+....++++|++.++.
T Consensus 74 -~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 74 -YSAAEFRADALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred -cCHHHHHHHHHHHHHHHHHcCCeEEEECCch
Confidence 1223444455455555556677666666654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00022 Score=64.19 Aligned_cols=27 Identities=30% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+...+++.||||+|||++++.++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999999997664
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00021 Score=63.70 Aligned_cols=28 Identities=18% Similarity=-0.191 Sum_probs=23.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.-++++||||+||||++..++..+...+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3467889999999999999998886544
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=62.98 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+.+.||+|+||||+.+.|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 478999999999999999999886444
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=9.1e-05 Score=70.40 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+++|.||||+||||++++||+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456999999999999999999999986
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00058 Score=65.84 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=45.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----cccc-----------chhhHHHHH----
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------TGPKTRRRI---- 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~-----------~~~~~~~~~---- 302 (482)
+..-++++||||+|||++|..++..+...+ .+++.++....... .+|. +...+.+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 444688999999999999999998775432 24444544322111 1111 111222222
Q ss_pred HhcCCcEEEEeccccccc
Q 011578 303 KEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~ 320 (482)
+.....+|+||.+..+.+
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 223458999999999985
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=70.62 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=52.8
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-ccccccchhhHHHHHHhcCCcEEEEeccccc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHTGPKTRRRIKEAEGGILFVDEAYRL 318 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l 318 (482)
..++..++++||||+||||++++|+..+.. .++.+..+... ..++| .+ ....++|+||++.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g-------~~~~~~~~~~~~~~~lg-------~~---~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLDRLNFELG-------VA---IDQFLVVFEDVKGT 228 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTTTHHHHHG-------GG---TTCSCEEETTCCCS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCC-------cEEEEeccchhHHHHHH-------Hh---cchhHHHHHHHHHH
Confidence 445668999999999999999999986521 33322222110 00111 11 13467899999988
Q ss_pred cc-CCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 319 IP-MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
.. .+...+.... .....+...++++..+++.++.++
T Consensus 229 ~~~~r~l~~~~~~-~~~~~l~~~ldG~v~v~~~tn~~~ 265 (377)
T 1svm_A 229 GGESRDLPSGQGI-NNLDNLRDYLDGSVKVNLEKKHLN 265 (377)
T ss_dssp TTTTTTCCCCSHH-HHHHTTHHHHHCSSCEEECCSSSC
T ss_pred HHHHhhccccCcc-hHHHHHHHHhcCCCeEeeccCchh
Confidence 76 2221111111 123445555665544444333333
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00029 Score=67.66 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----ccccc-----------chhhH----HHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKT----RRRI 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~----~~~~ 302 (482)
+..-++++||||+|||++|..++..+...+ ..++.++...... +.+|. +.... +.++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 344588999999999999999998776432 2444444332111 11121 11111 1222
Q ss_pred HhcCCcEEEEeccccccc
Q 011578 303 KEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~ 320 (482)
......+|+||++..+.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 233468999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=6.1e-05 Score=64.92 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..+++.|+||+||||+|+.|++.++. +++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~-------~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE-------PWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS-------CEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEeccch
Confidence 46899999999999999999998754 566555443
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00099 Score=60.40 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+..-+++.||||+|||+++..++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999998887654
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00024 Score=64.35 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=20.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+++.||+|+|||.+|..++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 59999999999999998887754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00033 Score=62.42 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..-++++||||+|||++++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999998
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0021 Score=56.95 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec------cccccc----------cccc--chhhHHHHHHh
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR------TDLVGE----------FVGH--TGPKTRRRIKE 304 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~------~~~~~~----------~~g~--~~~~~~~~~~~ 304 (482)
...+++.|+||+|||+++-.+|..+...|.. .-++.+++ ..+... +-|. .+..+.+++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~--V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~- 82 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVR--VMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK- 82 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCC--EEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCC--EEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh-
Confidence 3568999999999999999999998776542 12233322 011111 1111 1233445454
Q ss_pred cCCcEEEEecccccc
Q 011578 305 AEGGILFVDEAYRLI 319 (482)
Q Consensus 305 a~~~vl~iDE~d~l~ 319 (482)
.++.+++|||+-...
T Consensus 83 ~~pdlvIVDElG~~~ 97 (228)
T 2r8r_A 83 AAPSLVLVDELAHTN 97 (228)
T ss_dssp HCCSEEEESCTTCBC
T ss_pred cCCCEEEEeCCCCCC
Confidence 357899999997653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00043 Score=66.56 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----ccccc-----------chhhHHH----HH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKTRR----RI 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~~~----~~ 302 (482)
+..-++++||||+|||++|..++..+...+ .+++.++...... ..+|. +...+.+ +.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g----~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 445688999999999999999998876533 2455555422111 11111 1112222 23
Q ss_pred HhcCCcEEEEeccccccc
Q 011578 303 KEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~ 320 (482)
+.....+|+||.+..+.+
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 334568999999999875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=64.51 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+...++|.||||+||||+++.|++.++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35567999999999999999999998864
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00071 Score=64.81 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=45.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccc-----------cch----hhHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVG-----------HTG----PKTRRRIK 303 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g-----------~~~----~~~~~~~~ 303 (482)
..-++++||||+|||+++..++..+...+ +.++.++....... -+| .+. ..+..+++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g----g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG----GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34578999999999999999999876432 24445554332110 011 111 11222233
Q ss_pred hcCCcEEEEeccccccc
Q 011578 304 EAEGGILFVDEAYRLIP 320 (482)
Q Consensus 304 ~a~~~vl~iDE~d~l~~ 320 (482)
.....+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 34568999999998886
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00012 Score=63.54 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...++|.||||+||||+|+.||+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999998864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00062 Score=63.36 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=57.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~ 321 (482)
+.-+++.||+|+|||++|..||+.++. .++..+...+... -+| |.+...+-..... =-|||..+ +.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~qvY~~~~ig-Takp~~~E~~~v~--hhlid~~~---~~ 76 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV-------ELISVDSALIYKGMDIG-TAKPNAEELLAAP--HRLLDIRD---PS 76 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE-------EEEECCTTTTBTTCCTT-TTCCCHHHHHHSC--EETSSCBC---TT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC-------cEEeccccccccccccc-CCCCCHHHHcCCC--EEEeccCC---cc
Confidence 345788999999999999999997643 4444443322211 111 1111112222222 23555443 12
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
...+..++...+...+-+....|++.|++.+|.--+..+
T Consensus 77 e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~al 115 (316)
T 3foz_A 77 QAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKAL 115 (316)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHH
Confidence 222234566666666666677788877776665444444
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=63.49 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=27.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
.++|.||||+||+|.|+.||+.++ +..++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---------~~~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---------FVHISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---------CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---------CeEEcHHHHH
Confidence 478999999999999999999774 4556655544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00072 Score=61.21 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+..-++++||||+|||++++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999974
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=67.84 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+++.||||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999988887764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00061 Score=61.11 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-+.+.||+|+||||+++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999999854
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00034 Score=67.63 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=55.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
.-+++.||+|+|||++|..||+.++. .++..+...+... -+| |.+...+ +...--=-|||.++ +..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~-------~iis~Ds~QvYr~l~i~-T~kp~~~--E~~gv~hhlid~~~---~~~ 69 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG-------EVINSDSMQVYKDIPII-TNKHPLQ--EREGIPHHVMNHVD---WSE 69 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE-------EEEECCTTTTBSSCTTT-TTCCCGG--GTTTCCEESCSCBC---TTS
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC-------eEeecCccceecccccc-cCCCCHH--HHcCchhhcCCccC---hHh
Confidence 34778999999999999999998853 3443332212111 011 0000000 11111345667665 222
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
..+..++...+...+-.....|++.|++.+|.--+
T Consensus 70 ~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi 104 (409)
T 3eph_A 70 EYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYL 104 (409)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGG
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHH
Confidence 22335566677666666677788777766654333
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00019 Score=62.24 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.2
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+..++|+|+|||||||+++.|++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999997
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0019 Score=66.86 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=35.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHH
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
..++|.+...+.|.+.+... ......++++||+|+|||++|+.+++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL--------------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS--------------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc--------------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 35789998888888763210 123456889999999999999999864
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00029 Score=60.43 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.||||+||||+|+.||+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00027 Score=61.16 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=23.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++|.|+||+||||+|+.|++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999998864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00064 Score=60.35 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=28.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
.++-+++.||||+||+|.|+.|++.++ +..++..++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g---------~~hIstGdllR 65 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH---------FNHLSSGDLLR 65 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC---------CEEECHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC---------CceEcHHHHHH
Confidence 445577899999999999999999874 45555555443
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00026 Score=60.37 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.||||+||||+++.|++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998764
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00057 Score=63.79 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+..+++.||||+||||+|+.|++.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345668899999999999999999866
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00036 Score=60.75 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.|+||+||||+++.|++.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456889999999999999999998753
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00029 Score=60.72 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+++.|+||+||||+++.|++.++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4457999999999999999999998753
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0003 Score=59.86 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...++|.|+|||||||+|+.||+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457999999999999999999998875
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00038 Score=61.23 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+..++|.|+||+||||+|+.|++.++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34557899999999999999999998854
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.4
Q ss_pred ceeEecCCCCchH-HHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKT-MVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT-~la~~la~~~~~ 269 (482)
-.+++||.|+||| .|.+++.+....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3567899999999 888888887653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0034 Score=57.57 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...+++.||+|+||||+.++++..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4456889999999999999999998864
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0047 Score=57.27 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...-++++||||+|||++++.++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 344688999999999999999998665
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00039 Score=59.41 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+.|.||||+||||+++.||..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999765
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0027 Score=73.20 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----cc--------cchhhHHHH-------H
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VG--------HTGPKTRRR-------I 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~----~g--------~~~~~~~~~-------~ 302 (482)
+..-++++|+||+|||++|..+|..+... ..+++.++......++ +| ..+..+.++ .
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~----g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~ 806 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHh
Confidence 45568899999999999999999988642 2356666665443332 23 111122222 2
Q ss_pred HhcCCcEEEEeccccccc-CC----CCCCC-hhHHHHHHHHHhhhc----CCcEEEEEecC
Q 011578 303 KEAEGGILFVDEAYRLIP-MQ----KADDK-DYGIEALEEIMSVMD----GGKVVVIFAGY 353 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~-~~----~~~~~-~~~~~~~~~ll~~l~----~~~~~vi~~~~ 353 (482)
.+...++||||.+..+.+ .. ..+.+ +...+.+++++..|. +..+.||+.+.
T Consensus 807 ~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 807 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 334569999999999986 21 11111 223344555544443 45666666653
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0072 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+++.||+|+|||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998754
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0006 Score=63.58 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=55.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
.-+++.||+|+|||++|..||+.++. .++..+...+... -+| |.+...+ +...-.=-|||..+ +..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~QvYr~~~ig-Takp~~~--E~~gvphhlid~~~---~~e 70 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG-------EVISGDSMQVYRGMDIG-TAKITAE--EMDGVPHHLIDIKD---PSE 70 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE-------EEEECCGGGGBTTCCTT-TTCCCHH--HHTTCCEESSSCBC---TTS
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc-------ceeecCcccceeeeeec-CCCCCHH--HHcCCCEEEeccCC---hhh
Confidence 35788999999999999999986642 3444333222211 111 1111111 11112344666543 222
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
..+..++...+...+-.....|++.|++.+|.--+..+
T Consensus 71 ~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aL 108 (322)
T 3exa_A 71 SFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAV 108 (322)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHH
Confidence 22234566666666666667788777766654433333
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0015 Score=62.19 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||++|..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 44568899999999999999999764
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0055 Score=58.79 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+++.||+|+||||+.++++..+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 346889999999999999999998875
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0041 Score=63.74 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=33.3
Q ss_pred hchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHH
Q 011578 209 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 209 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+|.+..++.|.+++..- .......+.++|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 58888888888774211 012345688999999999999999996
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0023 Score=64.66 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=47.4
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
-||+|||+..+..... ......+..+.+.=..--+.+|++|.....+.+ +..++.-|..+|.|...+..+...
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I---~~~Iran~~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQKARAAGIHLILATQRPSVDVI---TGLIKANIPTRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTS---CHHHHHTCCEEEEECCSCHHHHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHHhhCCeEEEEEecCcccccc---cHHHHhhhccEEEEEcCCHHHHHH
Confidence 5899999998865321 122233444444433444666666543322222 455667788889999999999888
Q ss_pred HHH
Q 011578 388 ILH 390 (482)
Q Consensus 388 il~ 390 (482)
|+.
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00064 Score=59.03 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++|.||||+||||+++.|++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998874
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00053 Score=61.25 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..++|.|+||+||||+|+.||+.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4567999999999999999999998753
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00058 Score=60.06 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998753
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00085 Score=59.48 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..++|.|+||+||||+++.|++.++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999998644
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0011 Score=57.89 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...+.-++|.||+|+|||||++.|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3455678899999999999999999865
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0029 Score=54.90 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=41.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-------ccccccccc-----hhhHHHHHHhcC--CcEE
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-------LVGEFVGHT-----GPKTRRRIKEAE--GGIL 310 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~-----~~~~~~~~~~a~--~~vl 310 (482)
-.+++||+|+|||+.+-.+++.+...+. .++.+.+.. .+....|-+ .....++++... .-+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~----kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvV 85 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQ----KIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVI 85 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC----EEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEE
Confidence 4678999999999999999988854332 222222110 011111211 011235555543 4799
Q ss_pred EEeccccccc
Q 011578 311 FVDEAYRLIP 320 (482)
Q Consensus 311 ~iDE~d~l~~ 320 (482)
+|||+..+.+
T Consensus 86 iIDEaqfl~~ 95 (191)
T 1xx6_A 86 AIDEVQFFDD 95 (191)
T ss_dssp EECSGGGSCT
T ss_pred EEECCCCCCH
Confidence 9999988754
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=60.11 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.|+||+||||+|+.|++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457899999999999999999998753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00052 Score=58.59 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+|+.|++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999998864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00056 Score=58.07 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+|+.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0007 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+++.|++.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999874
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00047 Score=59.49 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=19.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 456889999999999999999997764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=60.34 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+..++|.||||+||||+|+.|++.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999999764
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00084 Score=60.03 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.||||+||||+++.||+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00056 Score=61.00 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...++|.|+||+||||+|+.||+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 457899999999999999999998853
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=58.44 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..++|.|+||+||||+++.|++.++..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999998744
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00096 Score=58.58 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=25.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
++..+.+.||+|+||||+++.|+..+...|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G 53 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKG 53 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455688999999999999999999987533
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00039 Score=60.51 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+..+++.||||+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4456889999999999999999974
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00054 Score=59.31 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++|.|+||+||||+++.|++.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999997753
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00064 Score=58.41 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.1
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.-+++.||||+||||+|+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999999998
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00085 Score=60.52 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.|+||+||||+|+.||+.++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4467999999999999999999998853
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00086 Score=63.31 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=52.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCC-cEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~-~vl~iDE~d~l~~~ 321 (482)
..+++.||+|+|||+||..||+.++. .++..+...+... -+|- .+.. .++..+ .--|||..+--.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~-------eiIs~Ds~qvYr~mdIgT-akp~---~eE~~gvphhlidi~~~~~-- 107 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL-------EVINSDKMQVYKGLDITT-NKIS---VPDRGGVPHHLLGEVDPAR-- 107 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE-------EEEECCSSTTBSSCTTTT-TCCC---SGGGTTCCEESSSCBCGGG--
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC-------cEEcccccccccceeeec-CCCC---HHHHcCCCEeeccccCccc--
Confidence 45889999999999999999986643 4555443322111 1110 0000 011111 235556544201
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
...+..++...+...+-+....++++|+..++.--+..+
T Consensus 108 e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~al 146 (339)
T 3a8t_A 108 GELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHAL 146 (339)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHH
Confidence 111123444455444444556677777766654434433
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0006 Score=60.64 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.||||+||||+|+.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999997753
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00055 Score=62.22 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
++..++|.||||+||||+|+.|++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 566799999999999999999998774
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0065 Score=59.80 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.-+++.|+||+||||+|+.|++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999998653
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0035 Score=61.13 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..-++++||||+|||+|++.++-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 445688999999999999998764
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=60.64 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+.-++|.|+||+||||+|+.|++.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 34688999999999999999999876433
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00053 Score=61.04 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00067 Score=59.34 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999999999999998753
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00068 Score=59.03 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+..++|.|+||+||||+|+.|++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999999774
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+..+.+.||||+||||+++.|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45568899999999999999999977
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0034 Score=60.17 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=21.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||++|..+|...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33457899999999999999999753
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00057 Score=61.41 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..++|.||||+||||+|+.|++.++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999998764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0037 Score=71.10 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=48.7
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----cccccc-----------chhhHH----H
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTR----R 300 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~-----------~~~~~~----~ 300 (482)
..+...++++||||+|||++|..+|..+...+ .+++.++..... .+..|- +...+. .
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g----~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcC----CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 34556789999999999999999999887532 245555543322 111220 111122 2
Q ss_pred HHHhcCCcEEEEeccccccc
Q 011578 301 RIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~ 320 (482)
+.+.....+|+||++..+.+
T Consensus 805 lv~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCC
T ss_pred HHHccCCCEEEEechhhhcc
Confidence 22334568999999999985
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0006 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++.||||+||||+|+.| +.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 5789999999999999999 5543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0051 Score=58.46 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-cc----cc---ccccchhhHHHHHHh---cCCcEEE
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-LV----GE---FVGHTGPKTRRRIKE---AEGGILF 311 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~----~~---~~g~~~~~~~~~~~~---a~~~vl~ 311 (482)
...+++.||+|+||||+.++|+..+.. ....+.+.... +. .. ++...+...+..+.. ..+.+|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-----~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-----EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-----TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-----CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEE
Confidence 457999999999999999999986532 22334443321 10 01 220012233333333 3568999
Q ss_pred Eecccc
Q 011578 312 VDEAYR 317 (482)
Q Consensus 312 iDE~d~ 317 (482)
+||.-.
T Consensus 246 ldE~~~ 251 (330)
T 2pt7_A 246 LGELRS 251 (330)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999854
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.01 Score=51.31 Aligned_cols=30 Identities=20% Similarity=0.045 Sum_probs=25.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
...+++++++|.|||++|-.+|-.....|.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 356889999999999999999998865554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=56.22 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...++|.||||+||||+++.|+..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 34588999999999999999998764
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=57.59 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++|.|+||+||||+|+.|++.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999775
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999998865
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0008 Score=59.17 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..++|.|+||+||||+++.|++.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344688999999999999999998764
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=58.66 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999774
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=57.93 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+..++|.||||+||||+++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999999866
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.006 Score=59.04 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...+++.||+|+||||+.++++..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 4456889999999999999999998864
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.003 Score=63.40 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=44.7
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
-||+|||+..+..... ....+.+..|.+.-..--+.+|++|.....+.+ +..++.-|+.+|.|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~~----~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl---~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG----KKVEELIARLAQKARAAGIHLVLATQRPSVDVI---TGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHHH----HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTS---CHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhhh----HHHHHHHHHHHHHhhhCCcEEEEEecCCccccc---cHHHHhhcCCeEEEEcCCHHHHHH
Confidence 4899999987764111 112233333333333324555566543322211 444566778888999999999988
Q ss_pred HHHH
Q 011578 388 ILHI 391 (482)
Q Consensus 388 il~~ 391 (482)
|+..
T Consensus 372 ilg~ 375 (512)
T 2ius_A 372 ILDQ 375 (512)
T ss_dssp HHSS
T ss_pred hcCC
Confidence 8753
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.015 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.6
Q ss_pred CCceeEecCCCCchHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la 264 (482)
...+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3578999999999998666554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0018 Score=55.55 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
+..+.|.|++|+||||+++.|+..+...+. +++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~----~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCC----cEEEECC
Confidence 446789999999999999999998853222 5555553
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+.+.||||+||||+++.|++.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999997753
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.|.|+||+||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999999999998864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=58.06 Aligned_cols=28 Identities=39% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+.+.||||+||||+++.|++.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999999999999998853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=55.41 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=25.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+..++|.|+||+||||+++.|+..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44568899999999999999999998753
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0023 Score=55.59 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.|.|+||+||||+++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998854
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00023 Score=52.55 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhh
Q 011578 383 EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDEL 462 (482)
Q Consensus 383 ~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~ 462 (482)
++|.+||+.++++.. +..+++.+.++..+. +..|++|.+++..|...+..+- .
T Consensus 1 ~~R~~Il~~~l~~~~---------~~~~vdl~~lA~~t~---------G~SGADi~~l~~eAa~~ai~~~---------~ 53 (82)
T 2dzn_B 1 MERRLIFGTIASKMS---------LAPEADLDSLIIRND---------SLSGAVIAAIMQEAGLRAVRKN---------R 53 (82)
T ss_dssp -------------CE---------ECTTCCSTTTTTSSC---------CCCHHHHHHHHHHHHHHHHHTT---------C
T ss_pred CHHHHHHHHHHcCCC---------CCCcCCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhc---------c
Confidence 468899999887653 345566555555554 4568999999999988775441 2
Q ss_pred hcccHHHHHHHHHHHH
Q 011578 463 RTITLEDLEAGLKLLL 478 (482)
Q Consensus 463 ~~i~~~d~~~al~~~~ 478 (482)
..|+.+||..|++++.
T Consensus 54 ~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 54 YVILQSDLEEAYATQV 69 (82)
T ss_dssp SEECHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 4799999999999873
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..-+.|.||+|+||||+++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999999865
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.022 Score=64.26 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=36.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..++|.+...++|.+.+... ......+.++|++|+|||+||+.+++..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~--------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL--------------NGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT--------------TTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred ceeccHHHHHHHHHHHHhhc--------------cCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 35789998888888763211 1234557899999999999999998764
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.006 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-..+-|.||||+||||+|+.|++.++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 356789999999999999999998854
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.016 Score=54.03 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=43.8
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----ccccc-----------chhhH-HHH------H
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKT-RRR------I 302 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~-~~~------~ 302 (482)
.++++||||+|||+|+-.++......+ ..+.++.++...-.. +-+|- +...+ -++ +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 578999999999999988887765421 112445555432111 11111 11111 112 2
Q ss_pred HhcCCcEEEEecccccccC
Q 011578 303 KEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~~ 321 (482)
++....+|+||-+..+.+.
T Consensus 108 ~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC
T ss_pred hccCceEEEEecccccccc
Confidence 2234589999999999863
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=58.03 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..+.+.||||+||||+++.|++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998774
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=57.14 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0058 Score=61.89 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=25.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+.-+++.|.||+||||+|+.|++.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 34578999999999999999999998744
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0033 Score=62.78 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||+++..+|..+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34456889999999999999999987754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0025 Score=56.00 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
++..+.|.||||+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568899999999999999999855
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.049 Score=47.45 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=27.6
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+.. ..++++.||-+.....+
T Consensus 148 ~~lViDEah~~~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~ 194 (206)
T 1vec_A 148 QMIVLDEADKLLSQD------F-VQIMEDIILTLPKNRQILLYSATFPLSVQKF 194 (206)
T ss_dssp CEEEEETHHHHTSTT------T-HHHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred CEEEEEChHHhHhhC------c-HHHHHHHHHhCCccceEEEEEeeCCHHHHHH
Confidence 789999999886521 1 2445666666654 34555555555555443
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0062 Score=53.45 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=39.5
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc--------ccccccccc-----hhhHHHHHHhcC--CcEE
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--------LVGEFVGHT-----GPKTRRRIKEAE--GGIL 310 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~-----~~~~~~~~~~a~--~~vl 310 (482)
.+++||.|+|||+.+-.++..+...+. .++.+.+.. +.+. .|-+ .....++++.+. ..+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~----kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~~~~~~~~~~~~dvV 105 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQ----HAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSASKDIFKHITEEMDVI 105 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTC----CEEEEECC------------------CCEEECSSGGGGGGGCCSSCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC----EEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCHHHHHHHHhcCCCEE
Confidence 457899999999999999988865442 333333221 1111 1110 011123444443 4799
Q ss_pred EEeccccccc
Q 011578 311 FVDEAYRLIP 320 (482)
Q Consensus 311 ~iDE~d~l~~ 320 (482)
+|||+..+.+
T Consensus 106 iIDEaQF~~~ 115 (214)
T 2j9r_A 106 AIDEVQFFDG 115 (214)
T ss_dssp EECCGGGSCT
T ss_pred EEECcccCCH
Confidence 9999988654
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.015 Score=62.96 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=33.2
Q ss_pred hchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHH
Q 011578 209 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 209 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+|.+...+.|.+++... .....+.++||+|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~---------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL---------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC---------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc---------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 78888888888764311 12456889999999999999999863
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0027 Score=57.69 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+.|.||||+||||+++.||+.++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999998864
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0021 Score=56.40 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..+.|.|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999976
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.018 Score=54.34 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||++|..+|.....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34556899999999999999999976654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0049 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||++|..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33457899999999999999999753
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0031 Score=55.70 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
++.-+.|.||+|+||||+++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999865
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.044 Score=48.74 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=28.2
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+.. ..++++.||-++....+
T Consensus 169 ~~lViDEah~~~~~~------~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 215 (228)
T 3iuy_A 169 TYLVIDEADKMLDME------F-EPQIRKILLDVRPDRQTVMTSATWPDTVRQL 215 (228)
T ss_dssp CEEEECCHHHHHHTT------C-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred eEEEEECHHHHhccc------h-HHHHHHHHHhCCcCCeEEEEEeeCCHHHHHH
Confidence 789999999887531 1 1334555666654 44555556656665544
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=55.08 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.2
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
-++|.||||+||||+++.|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 367899999999999999987
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0034 Score=55.41 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+.+.||+|+||||+++.|+..+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4456789999999999999999998874
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..+++.|+||+||||+++.|++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999999887
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0035 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.+.|++|+||||+++.|++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999998864
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0041 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..-+.|.||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999864
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0062 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999998887654
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0026 Score=55.37 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.++|++||||||+++.|++.++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 477999999999999999999764
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.069 Score=47.25 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=27.1
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+..... ...+..++..+..+. ++++.||-++....+
T Consensus 157 ~~iViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~ 203 (224)
T 1qde_A 157 KMFILDEADEMLSSGF-------KEQIYQIFTLLPPTTQVVLLSATMPNDVLEV 203 (224)
T ss_dssp CEEEEETHHHHHHTTC-------HHHHHHHHHHSCTTCEEEEEESSCCHHHHHH
T ss_pred cEEEEcChhHHhhhhh-------HHHHHHHHHhCCccCeEEEEEeecCHHHHHH
Confidence 7999999998865221 133455666665444 555555555555443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.064 Score=49.96 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.||+|+||||++..||..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557889999999999999999998864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0095 Score=58.79 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....++|+||||+|||+|+..++.....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 4567999999999999999999987654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0044 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...+.|.||+|+||||+++.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998763
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.89 E-value=0.036 Score=54.53 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+..+++.|+||+||||++..||..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999988643
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0032 Score=57.41 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+.+.|+||+||||+|+.|++.++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4456889999999999999999998765
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.+.|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999998 5
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.033 Score=54.89 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
++..+++.|++|+||||++-.||..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999765
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.013 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+++.||+|+||||++..||..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4456889999999999999999998865
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.02 Score=56.87 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||++|..+|.....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34456889999999999999999987754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0046 Score=55.03 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+...+.|.||+|+||||+++.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455668899999999999999999855
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.076 Score=51.99 Aligned_cols=28 Identities=25% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+++.||+|+||||++..||..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4456778899999999999999998864
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.061 Score=49.13 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=28.6
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+... .++++.||-++.+..+
T Consensus 203 ~~lViDEah~l~~~~------~-~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~ 249 (262)
T 3ly5_A 203 QCLVIDEADRILDVG------F-EEELKQIIKLLPTRRQTMLFSATQTRKVEDL 249 (262)
T ss_dssp CEEEECSHHHHHHTT------C-HHHHHHHHHHSCSSSEEEEECSSCCHHHHHH
T ss_pred CEEEEcChHHHhhhh------H-HHHHHHHHHhCCCCCeEEEEEecCCHHHHHH
Confidence 789999999887531 1 13456666666554 4555556556666544
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0048 Score=54.42 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
++..+.+.||+|+||||+++.|+..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344578999999999999999999875
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0045 Score=56.46 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+.+.||+|+||||+++.|++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346889999999999999999987753
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0039 Score=54.80 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.5
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+.|.||+|+||||+++.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999997
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0047 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+..+.+.|++|+||||+++.|++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4556889999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0059 Score=55.03 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+..+.+.|++|+||||+++.|++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35567889999999999999999998753
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0032 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-+.|.|++|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999874
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.025 Score=56.26 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 237 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 237 ~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+....+..+.|.||+|+||||+++.|+..+..
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 333445556889999999999999999998864
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.014 Score=58.36 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=25.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..+++.|.||+||||+++.|++.+...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 345789999999999999999999988643
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.014 Score=57.10 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=18.4
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.-.++.|+||||||++...+++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3467899999999999988764
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0054 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.|+||+||||+|+.|++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999985
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.069 Score=57.54 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..-+++.||.|+||||+.|.++...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHHH
Confidence 3457899999999999999998654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0082 Score=53.82 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...-++|.||||+||||+++.|++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3445789999999999999999998864
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.063 Score=56.83 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.9
Q ss_pred CCceeEecCCCCchHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~ 261 (482)
..++++.+|+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4689999999999999883
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0065 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+..+.+.||||+||||+++.|++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34457799999999999999999854
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0071 Score=54.83 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 4445779999999999999999998753
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.029 Score=49.73 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=47.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-------ccccccccc-----hhhHHHHHHhcC-CcEEE
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-------LVGEFVGHT-----GPKTRRRIKEAE-GGILF 311 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~-----~~~~~~~~~~a~-~~vl~ 311 (482)
-.+++||.|+|||+.+-..+......+. .++.+.+.. +.+. .|-+ -....++++.+. ..+|+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~----kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~~~~dvVi 95 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQY----KCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEALGVAVIG 95 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTC----CEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHhccCCEEE
Confidence 3567899999999888777776653332 222222211 1111 0110 001112333333 37999
Q ss_pred EecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 312 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 312 iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
|||+.-+.. +.++++.++...+.||+++-
T Consensus 96 IDEaQF~~~-------------v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 96 IDEGQFFPD-------------IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp ESSGGGCTT-------------HHHHHHHHHHTTCEEEEECC
T ss_pred EEchhhhhh-------------HHHHHHHHHhCCCEEEEEec
Confidence 999977631 35566666554556666653
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.017 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=20.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+..-++++|+||+|||++|..+|..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445889999999999999987754
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.062 Score=48.15 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=26.6
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+..... ...+..++..+..+. ++++.||-++....+
T Consensus 175 ~~lViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~ 221 (237)
T 3bor_A 175 KMFVLDEADEMLSRGF-------KDQIYEIFQKLNTSIQVVLLSATMPTDVLEV 221 (237)
T ss_dssp CEEEEESHHHHHHTTC-------HHHHHHHHHHSCTTCEEEEECSSCCHHHHHH
T ss_pred cEEEECCchHhhccCc-------HHHHHHHHHhCCCCCeEEEEEEecCHHHHHH
Confidence 7899999998864211 133455666665444 444445545555443
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0066 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..+.+.|++|+|||++++.|++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 356889999999999999999997753
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.11 Score=48.44 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=29.8
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVI 361 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~~ 361 (482)
.+|+|||+|.+..... ....+..++..+.. ..++++.||.++.+..+.
T Consensus 237 ~~lVlDEad~l~~~~~------~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 237 KVFVLDEADVMIATQG------HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp SEEEETTHHHHHHSTT------HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHH
T ss_pred eEEEEeCHHHHhhccC------cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHH
Confidence 7999999999874211 12334556666654 445666677677666543
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0055 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..+.+.|+||+||||+|+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999994
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.014 Score=54.56 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++..+.|.||+|+||||+++.||..+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34556889999999999999999998864
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.11 Score=45.14 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.8
Q ss_pred CceeEecCCCCchHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARI 262 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~ 262 (482)
..+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987443
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.013 Score=49.55 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=24.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
..+.+.|++|+||||++..|+..+...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~ 33 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGW 33 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCC
Confidence 46889999999999999999998875443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0078 Score=52.70 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456889999999999999999998864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0061 Score=57.69 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++.||+|+|||++|+.||+.++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 578999999999999999999775
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.007 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.|.||.|+||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44457899999999999999999977
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.052 Score=58.61 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
-+++.||.|+||||+.|.++...
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999996543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0071 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=18.3
Q ss_pred CCCceeEecCCCCchHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARIL 263 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~l 263 (482)
+..-+.+.||+|+||||+++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3445789999999999999963
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0095 Score=55.64 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.4
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+...+.+.||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3455678899999999999999999987
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.01 Score=55.19 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4556789999999999999999999875
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0083 Score=52.79 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-+.|.||+|+||||++++|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44457899999999999999999866
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.053 Score=55.95 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
..++++.+|+|+|||.++-.++..+...
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~~ 225 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKLWSA 225 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCceEEEecCCCChHHHHHHHHHHHHhc
Confidence 3568999999999999998888877543
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0067 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...++|.||||+|||++|..|++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999999743
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.054 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=20.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.+|+|+|||.++-.++..+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999988777655
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0055 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=16.5
Q ss_pred CCCceeEecCCCCchHHHHHHHH-HHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILG-RLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la-~~~ 267 (482)
+..-+.|.||+|+||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44567899999999999999999 765
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.11 Score=55.12 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-+++.||.|+||||+.|.++....
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH
Confidence 3478999999999999999998653
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.086 Score=47.37 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=28.5
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
..|+|||+|.+.... + ...+..++..+.. ..++++.||-++....+
T Consensus 178 ~~lViDEah~l~~~~------~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 224 (242)
T 3fe2_A 178 TYLVLDEADRMLDMG------F-EPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 224 (242)
T ss_dssp CEEEETTHHHHHHTT------C-HHHHHHHHTTSCSSCEEEEEESCCCHHHHHH
T ss_pred cEEEEeCHHHHhhhC------c-HHHHHHHHHhCCccceEEEEEeecCHHHHHH
Confidence 689999999887521 1 1344566666654 44555556656665544
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0096 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..+.+.|++|+||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999997
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.012 Score=52.22 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...-+.+.||+|+|||||.++|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344678999999999999999998653
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.14 Score=49.29 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=17.8
Q ss_pred CCceeEecCCCCchHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la 264 (482)
...+++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4689999999999998765443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.053 Score=55.02 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHH--HHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARI--LGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~--la~~~~ 268 (482)
+...+++.||+|+|||||++. ++..+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 455688999999999999999 455553
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.12 Score=46.70 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=27.4
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+... .++++.||-+..+..+
T Consensus 188 ~~lViDEah~l~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~ 234 (249)
T 3ber_A 188 KYLVMDEADRILNMD------F-ETEVDKILKVIPRDRKTFLFSATMTKKVQKL 234 (249)
T ss_dssp CEEEECSHHHHHHTT------C-HHHHHHHHHSSCSSSEEEEEESSCCHHHHHH
T ss_pred CEEEEcChhhhhccC------h-HHHHHHHHHhCCCCCeEEEEeccCCHHHHHH
Confidence 689999999886521 1 13345666666544 4555555555555444
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.15 Score=45.37 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=28.0
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+..+. ++++.||-++....+
T Consensus 173 ~~lViDEah~~~~~~------~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 219 (236)
T 2pl3_A 173 QMLVLDEADRILDMG------F-ADTMNAVIENLPKKRQTLLFSATQTKSVKDL 219 (236)
T ss_dssp CEEEETTHHHHHHTT------T-HHHHHHHHHTSCTTSEEEEEESSCCHHHHHH
T ss_pred cEEEEeChHHHhcCC------c-HHHHHHHHHhCCCCCeEEEEEeeCCHHHHHH
Confidence 689999999886421 1 134456666665544 555555555555544
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0092 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+.+.||+|||||++++.||+.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 35889999999999999999999976
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.034 Score=52.44 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
..++..+++.||+|+||||++..||..+...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3455568899999999999999999988753
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.013 Score=55.08 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 4445779999999999999999998864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.02 Score=54.89 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=25.4
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++..+.+.||+|+||||+++.||..+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 334556889999999999999999998864
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.014 Score=51.53 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
..-+.|.|++|+||||+++.|++.+...+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34578999999999999999999997644
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.014 Score=55.03 Aligned_cols=29 Identities=0% Similarity=-0.217 Sum_probs=24.1
Q ss_pred ccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 367 FCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 367 l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
+...||..|.+..|....+..++++....
T Consensus 223 l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~ 251 (321)
T 3tqc_A 223 VSDFFDFSLFVDAQAQVIQKWYIDRVLSF 251 (321)
T ss_dssp GGGGCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred hhhhcCeEEEEECCHHHHHHHHHHhcchh
Confidence 67788999999999888888888887654
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.018 Score=51.67 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
.+.-+.|.|++|+||||+++.|++.+...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3456889999999999999999999987553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.016 Score=54.35 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+.+.||+|+||||+++.||..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3456889999999999999999998864
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.043 Score=48.07 Aligned_cols=25 Identities=16% Similarity=-0.138 Sum_probs=17.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-.+++||-|+|||+.+-..+..+..
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~ 54 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIY 54 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999944333454543
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.062 Score=49.59 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++.+|+|+|||.++-.++....
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHH
Confidence 467899999999999987776543
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.01 Score=55.27 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+.-+.+.||+|+||||+|+.|++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345889999999999999999998874
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.16 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.4
Q ss_pred CCceeEecCCCCchHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la 264 (482)
..++++.||+|+|||+.+-...
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHHH
Confidence 5689999999999999985443
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.037 Score=52.96 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=26.6
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.......+++.||||+|||++++.|++.+..
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 3446678999999999999999999998864
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.026 Score=48.02 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
..-+.+.||+|+||||+++.|...+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 34688999999999999999999876543
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.21 Score=45.09 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.7
Q ss_pred CceeEecCCCCchHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARI 262 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~ 262 (482)
..+++.+|+|+|||..+-.
T Consensus 61 ~~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5699999999999986543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.087 Score=52.11 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||++|-.+|.....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 34456889999999999999999987764
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.017 Score=59.35 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=28.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+..++|.|+||+||||+|+.|++.+...+. +++.++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~----~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEech
Confidence 3456889999999999999999999853322 5555543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.019 Score=53.57 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.7
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.||||+|||++++.++..+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34556889999999999999999998764
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.3 Score=42.91 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.1
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 46999999999999876655543
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.22 Score=44.69 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.3
Q ss_pred CceeEecCCCCchHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~ 261 (482)
..+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999998643
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.33 Score=48.62 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..+++.|+||+||||++..||..+...+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999887543
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.02 Score=51.02 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
..-+.|.||+|+||||+++.|++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4457899999999999999999999764
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.22 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.9
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.++++.+|+|+|||..+-..+-
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHH
Confidence 5799999999999987655543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.16 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=18.6
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.+|+|+|||+.+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999987655543
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=48.56 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++|.|+||+|||++|..+.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.021 Score=50.73 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH-cCC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM-VGI 272 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~-~~~ 272 (482)
.+.-+.|.|++|+||||+++.|++.+.. .+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~ 51 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGV 51 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCc
Confidence 4455788999999999999999999976 543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.069 Score=50.74 Aligned_cols=28 Identities=36% Similarity=0.572 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....+.+.||||+||||+.++|+..+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4456889999999999999999988754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.021 Score=53.69 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.-+.+.||+|+||||+++.|+..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344577999999999999999999775
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.033 Score=58.14 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=17.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
-.|+.||||||||+++-.+...+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999976555444443
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.031 Score=49.30 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
.-+.|.|++|+||||.++.|++.+...+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999987553
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.016 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-+.+.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999773
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.017 Score=57.92 Aligned_cols=28 Identities=4% Similarity=-0.059 Sum_probs=24.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....++|.|.+|+||||+|++||+.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3457889999999999999999999974
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.023 Score=53.82 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++.-+.|.||+|+||||+++.||..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556889999999999999999998865
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.02 Score=51.01 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+.+.|++|||||++|+.||+.++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 45789999999999999999999975
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.015 Score=49.36 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+.+.||+|+||||+++.|+..+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 57899999999999999999998763
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.18 Score=53.37 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++.||+|+||||+.|.++....
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhhh
Confidence 477999999999999999998763
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.021 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.1
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+.+.||+|+|||||.++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999998
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.23 Score=52.33 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.7
Q ss_pred CCceeEecCCCCchHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARIL 263 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~l 263 (482)
..++++.+|+|+|||+.+-..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHH
Confidence 468999999999999988443
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.31 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.7
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
..+++.+|+|+|||..+-..+
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHH
Confidence 569999999999997665433
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.12 Score=45.45 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=28.1
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+..... ...+..++..+..+ .++++.||-++.+..+
T Consensus 152 ~~lViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~ 198 (219)
T 1q0u_A 152 HILVVDEADLMLDMGF-------ITDVDQIAARMPKDLQMLVFSATIPEKLKPF 198 (219)
T ss_dssp CEEEECSHHHHHHTTC-------HHHHHHHHHTSCTTCEEEEEESCCCGGGHHH
T ss_pred eEEEEcCchHHhhhCh-------HHHHHHHHHhCCcccEEEEEecCCCHHHHHH
Confidence 7899999999864211 13445666666543 4555556555555444
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.032 Score=49.30 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=23.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..-+.|.|++|+||||+++.|++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456889999999999999999998863
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.026 Score=57.78 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+..++|.|+||+||||+|++|++.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 34568899999999999999999999853
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=94.12 E-value=0.26 Score=47.82 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCceeEecCCCCchHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~ 261 (482)
...+++.+|+|+|||..+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 4689999999999998753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.018 Score=58.51 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....+.|.|++|+||||++++|+..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3456889999999999999999999874
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.47 Score=41.99 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=28.1
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... .+ ...+..++..+..+ .++++.||-++....+
T Consensus 168 ~~lViDEah~~~~~~-----~~-~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~ 215 (230)
T 2oxc_A 168 RLFILDEADKLLEEG-----SF-QEQINWIYSSLPASKQMLAVSATYPEFLANA 215 (230)
T ss_dssp CEEEESSHHHHHSTT-----SS-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred CEEEeCCchHhhcCc-----ch-HHHHHHHHHhCCCCCeEEEEEeccCHHHHHH
Confidence 689999999986531 01 23445666666543 4555556555555444
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.39 Score=52.66 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.4
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
.++++.+|+|+|||.++....
T Consensus 102 ~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 579999999999999875433
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.25 Score=54.07 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.8
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
.-+++.||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 457899999999999999994
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.048 Score=52.35 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....+.+.|+||+||||++..|+..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4457899999999999999999988754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=21.6
Q ss_pred CCCCceeEecCCCCchHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.+...+.+.||+|+||||+.++|+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3455688999999999999999996
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.059 Score=45.91 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.1
Q ss_pred eeEecCCCCchHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~ 266 (482)
++++|++|+|||++|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 688999999999999999864
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.41 Score=47.11 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=27.3
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhc--C-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--G-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~--~-~~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+. . ..++++.||-+..+..+
T Consensus 205 ~~lVlDEah~~~~~g------f-~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 253 (434)
T 2db3_A 205 RFVVLDEADRMLDMG------F-SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRM 253 (434)
T ss_dssp CEEEEETHHHHTSTT------T-HHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHH
T ss_pred CeEEEccHhhhhccC------c-HHHHHHHHHhcCCCCCceEEEEeccCCHHHHHH
Confidence 789999999987531 1 133355555542 2 44556666666665544
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.027 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+ ..+.+.||+|+||||+.++|+..+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 567899999999999999999743
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.027 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+...+.+.||+|+||||+.++|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999999755
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.026 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=21.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+...+.+.||+|+|||||.++|+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4445779999999999999999963
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.28 Score=48.97 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.3
Q ss_pred CCCceeEecCCCCchHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVA 260 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la 260 (482)
.+..+++.+|+|+|||..+
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 3578999999999999774
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.4 Score=46.34 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=26.5
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMK 358 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~ 358 (482)
.+|+|||+|.+... .....+..++..+... .++++.||-+....
T Consensus 165 ~~vIiDEaH~~~~~-------~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~ 209 (400)
T 1s2m_A 165 SLFIMDEADKMLSR-------DFKTIIEQILSFLPPTHQSLLFSATFPLTVK 209 (400)
T ss_dssp CEEEEESHHHHSSH-------HHHHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred CEEEEeCchHhhhh-------chHHHHHHHHHhCCcCceEEEEEecCCHHHH
Confidence 79999999988641 1234456666666544 44555555444443
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.44 Score=47.07 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=26.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
++++..|+|+|||..+-.++..... ......+.+.+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECC
Confidence 7999999999999999888766532 112355555554
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.038 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
....+++.|++|+|||++..++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999999873
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.025 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...+.+.||+|+|||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.095 Score=53.16 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...+++.||||+|||++++.++.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4556889999999999999999987753
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.044 Score=46.95 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....+++.|++|+|||+|...+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999988876
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.72 E-value=0.01 Score=54.40 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.-++|.|++|+||||+++.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 44568899999999999999999866
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.24 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.1
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.+|+|+|||..+-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999995544433
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.035 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-.+++||.|+|||++.++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3568999999999999999998664
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.46 Score=52.61 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-cc--------------ccccc------------cch
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-LV--------------GEFVG------------HTG 295 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~g------------~~~ 295 (482)
...+++.+|+|+|||+++-..+......+ ...+.+.+.. +. +-+.| -|.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tp 274 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNK----QRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTT 274 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcC----CeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeCh
Confidence 46799999999999998765544332211 2344444432 10 00111 133
Q ss_pred hhHHHHHHhcC-----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCch
Q 011578 296 PKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSE 355 (482)
Q Consensus 296 ~~~~~~~~~a~-----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~ 355 (482)
..+...+.... -++|+|||+|.+... + -...+..++..+... +++++.||-++
T Consensus 275 e~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~------~-rg~~~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 275 EILRSMLYRGSEVMREVAWVIFDEVHYMRDK------E-RGVVWEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp HHHHHHHHHCSSHHHHEEEEEEETGGGTTSH------H-HHHHHHHHHHHSCTTSEEEEEECSCSS
T ss_pred HHHHHHHHcCccccccCCEEEEhhhhhcccc------c-hHHHHHHHHHhcCCCceEEEEcCCCCC
Confidence 44444443322 279999999988642 1 113445566666554 44555555334
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.033 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+...+.+.||+|+||||+.++|+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999999863
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.033 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+...+.+.||+|+|||||.++|+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34456789999999999999999963
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.17 Score=50.95 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=23.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..-+++.|+||+|||++|..+|.....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 4445889999999999999999987643
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.037 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.+.||+|+||||+.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.23 Score=50.05 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+++++|+|+|||.++-.++....
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999977776543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.038 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-+.+.||+|+||||+.|+|+...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44457899999999999999999854
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.033 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-+.++||||+|||++++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44457899999999999999999865
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.43 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.+|+|+|||+++......+
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIAMA 78 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHH
Confidence 579999999999998755544433
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.043 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+...+.+.||+|+|||||.+.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556889999999999999999963
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.04 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.||+|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.027 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=21.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567899999999999999998643
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.04 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.5
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+.+.||+|+|||+|.+.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.09 Score=46.33 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...+++.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998763
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.038 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=21.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
....-+.+.||+|+|||||.++|+..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 34556789999999999999999964
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.043 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+...+.+.||+|+||||+.++|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456789999999999999999974
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.31 Score=47.29 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=16.6
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
..+++.+|+|+|||+.+-..+
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHHH
Confidence 469999999999998754433
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.033 Score=51.27 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-+.+.||+|+||||+.++|+..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34457899999999999999999744
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.29 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.+.||+|+||||+++.|.+++
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 45689999999999999998754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.04 Score=50.33 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=22.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+...+.+.||+|+||||+.++|+..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34556889999999999999999974
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.038 Score=49.99 Aligned_cols=26 Identities=19% Similarity=0.586 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567899999999999999998743
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.04 Score=50.63 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+...+.+.||+|+|||||.++|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345567899999999999999999743
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.035 Score=50.17 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44457899999999999999999754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.04 Score=49.24 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567899999999999999999754
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.048 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-+.|.||+|+||||+.|+|+..+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 44557899999999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 482 | ||||
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 2e-18 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 4e-15 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 9e-15 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 9e-15 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 1e-13 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 1e-13 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 5e-13 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 3e-11 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 5e-06 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 1e-17 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 4e-10 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 4e-06 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 3e-16 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 6e-16 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 1e-14 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 1e-07 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 3e-07 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 4e-05 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 1e-14 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 6e-13 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 6e-11 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 4e-13 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 1e-10 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 1e-08 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 3e-07 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 2e-05 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 8e-13 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 4e-12 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 4e-06 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 1e-05 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 0.001 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 2e-12 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 5e-10 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 7e-09 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 3e-05 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 2e-11 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 1e-10 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 1e-09 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 3e-09 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 1e-08 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 1e-08 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 3e-04 | |
| d1ixva_ | 229 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 5e-10 | |
| d1ixva_ | 229 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 1e-08 | |
| d1ixva_ | 229 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 3e-08 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 1e-09 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 1e-08 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 3e-08 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 5e-08 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 7e-08 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 5e-05 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 6e-04 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 2e-08 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 3e-07 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 4e-07 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 5e-07 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 1e-06 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 2e-05 | |
| d1ot8a_ | 209 | d.211.1.1 (A:) Neurogenic locus notch receptor dom | 8e-08 | |
| d1ot8a_ | 209 | d.211.1.1 (A:) Neurogenic locus notch receptor dom | 2e-07 | |
| d1ot8a_ | 209 | d.211.1.1 (A:) Neurogenic locus notch receptor dom | 2e-06 | |
| d1ot8a_ | 209 | d.211.1.1 (A:) Neurogenic locus notch receptor dom | 2e-05 | |
| d1dcqa1 | 154 | d.211.1.1 (A:369-522) Pyk2-associated protein beta | 1e-07 | |
| d1dcqa1 | 154 | d.211.1.1 (A:369-522) Pyk2-associated protein beta | 1e-05 | |
| d1dcqa1 | 154 | d.211.1.1 (A:369-522) Pyk2-associated protein beta | 0.002 | |
| d1ihba_ | 156 | d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens | 7e-07 | |
| d1ihba_ | 156 | d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens | 1e-05 | |
| d1bd8a_ | 156 | d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma | 1e-06 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 2e-06 | |
| d1jbka_ | 195 | c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia col | 5e-06 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 6e-06 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 2e-05 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 2e-05 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 4e-05 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 4e-05 | |
| d1awcb_ | 153 | d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 { | 6e-05 | |
| d1awcb_ | 153 | d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 { | 3e-04 | |
| d1awcb_ | 153 | d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 { | 5e-04 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 4e-04 | |
| d1r6bx2 | 268 | c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A | 7e-04 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 7e-04 | |
| d1myoa_ | 118 | d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) | 7e-04 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 7e-04 | |
| d1ycsb1 | 130 | d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) | 0.001 | |
| d1bi7b_ | 125 | d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma | 0.001 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 0.001 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 0.002 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 0.002 |
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (209), Expect = 2e-18
Identities = 44/112 (39%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
TPLHV++ IVK+LL+ N+ ETPLHMAA+ G E AK LL + A
Sbjct: 2 TPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
+ AKA + TPLH + VK LLE NA+ + G TPL
Sbjct: 58 KVNAKAKDDQTPLHCAARIG----HTNMVKLLLENNANPNLATTAGHTPLHI 105
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.6 bits (182), Expect = 4e-15
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H + G L + LL+ S N N V +TPLH++A E+ K LL+ K
Sbjct: 4 LHVASFMGHLPIVKNLLQRGASP-NVSN-VKVETPLHMAARAGHTEVAKYLLQN----KA 57
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAH----------------------------- 107
++ A+ +TPLH AA+ G KLLL +
Sbjct: 58 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 117
Query: 108 ----GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163
A G TPLH++ Y + LLE +A +A G TPL H++
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYG----KVRVAELLLERDAHPNAAGKNGLTPL-HVA 172
Query: 164 NGPGSAKLRELLLWH 178
+ + +LLL
Sbjct: 173 VHHNNLDIVKLLLPR 187
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.9 bits (180), Expect = 9e-15
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H AQ G + L++ + + M TPLHV++ Y ++VK + +
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMV--DATTRMGYTPLHVASHYGNIKLVK----FLLQHQA 321
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 136
++ A+ G +PLH AA+ G + LLL +GA +++G TPL ++
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG-YISVTD 380
Query: 137 TVKTLLEYNADCSAKDNEGKT 157
+K + + + D +
Sbjct: 381 VLKVVTDETSFVLVSDKHRMS 401
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.9 bits (180), Expect = 9e-15
Identities = 50/203 (24%), Positives = 76/203 (37%), Gaps = 40/203 (19%)
Query: 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIV 64
+ + + +H A++G + LL +N + +N + QTPLH +A +V
Sbjct: 29 SNVKVETP----LHMAARAGHTEVAKYLL-QNKAKVNAKAKDD-QTPLHCAARIGHTNMV 82
Query: 65 KSLLE-----------------------------WPGNDKVELEAQNMYGETPLHMAAKN 95
K LLE + G TPLH+AAK
Sbjct: 83 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142
Query: 96 GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155
G A+LLL A A NG+TPLH ++ + VK LL + G
Sbjct: 143 GKVRVAELLLERDAHPNAAGKNGLTPLH----VAVHHNNLDIVKLLLPRGGSPHSPAWNG 198
Query: 156 KTPLDHLSNGPGSAKLRELLLWH 178
TPL H++ ++ LL +
Sbjct: 199 YTPL-HIAAKQNQVEVARSLLQY 220
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.4 bits (171), Expect = 1e-13
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH+ A + L++ V ++A G TPLH+A+ G + K LL H
Sbjct: 265 LTPLHLVAQEGHVPVADVLIKH----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A + AK G +PLH + + V LL+ A + ++G TPL G
Sbjct: 321 ADVNAKTKLGYSPLH----QAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GY 375
Query: 169 AKLRELLLWHSEE 181
+ ++L ++E
Sbjct: 376 ISVTDVLKVVTDE 388
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.4 bits (171), Expect = 1e-13
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A+ + + LL+ S V TPLH++A AE+V + +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGS--ANAESVQGVTPLHLAAQEGHAEMVA----LLLSKQA 255
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 136
N G TPLH+ A+ G A +L+ HG ++A G TPLH++ Y +
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY----GNIK 311
Query: 137 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
VK LL++ AD +AK G +PL H + G + LLL +
Sbjct: 312 LVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKN 352
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.5 bits (166), Expect = 5e-13
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
TPLHV+A Y K + + LLE A G TPLH+A + + KLLL
Sbjct: 131 KGFTPLHVAAKYGKVRVAELLLER----DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186
Query: 107 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
G + A NG TPLH++ + +LL+Y +A+ +G TPL
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVAR----SLLQYGGSANAESVQGVTPLHL 237
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.7 bits (151), Expect = 3e-11
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A+ G + + LL E + N TPLHV+ +N +IVK LL G+
Sbjct: 136 LHVAAKYGKVRVAELLL-ERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGS--- 190
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 136
+ G TPLH+AAK E A+ LL +G A++ G+TPLH + +
Sbjct: 191 -PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH----LAAQEGHAE 245
Query: 137 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
V LL A+ + + G TPL HL G + ++L+ H
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKH 286
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (109), Expect = 5e-06
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+TPLH++ + VK LL+ A + + + +TPL H++ G ++ + LL +
Sbjct: 1 LTPLHVASFMG----HLPIVKNLLQRGASPNVSNVKVETPL-HMAARAGHTEVAKYLLQN 55
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.6 bits (195), Expect = 1e-17
Identities = 43/207 (20%), Positives = 65/207 (31%), Gaps = 59/207 (28%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK- 75
+ A SG L + + + SL + ++T LH + EIV+ LL+
Sbjct: 7 VCNLAYSGKLEELKESILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVND 65
Query: 76 ----------------------------VELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
++ A N G TPLH AA +E A +LL
Sbjct: 66 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125
Query: 108 GAFIEAKANNGMTPLHLSVWY-----------------------------SIRSEDYATV 138
GA +AK + T +H + + E
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 185
Query: 139 KTLLEYNADCSAKDNEGKTPLDHLSNG 165
K L+ A ++ E KTPL G
Sbjct: 186 KLLVSQGASIYIENKEEKTPLQVAKGG 212
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 4e-10
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
+H A LL E + + ++ T +H +A +++ LL + +
Sbjct: 107 LHYAASKNRHEIAVMLL-EGGANPDAKDH-YEATAMHRAAAKGNLKMIHILLYYKAS--- 161
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 136
Q+ G TPLH+A E AKLL++ GA I + TPL ++ +
Sbjct: 162 -TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-----KGGLGL 215
Query: 137 TVKTLLE 143
+K ++E
Sbjct: 216 ILKRMVE 222
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 4e-06
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 31/120 (25%)
Query: 89 LHMAAKNG-CNEAAKLLLAHGAFIEAKANNGMTPLHLSV--------------------- 126
+ A +G E + +LA + + T LH +
Sbjct: 7 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66
Query: 127 --------WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+ + VK LL A +A + G TPL H + ++ +LL
Sbjct: 67 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL-HYAASKNRHEIAVMLLEG 125
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.5 bits (187), Expect = 3e-16
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLLAH 107
T L +A E++K LL+ G D + +++ + EA LLL H
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGP 166
GA + + G TPL ++ + V+ LLE + + + D++GKT L L+
Sbjct: 209 GADVNVRGERGKTPLI----LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVEL 263
Query: 167 GSAKLRELLLWH 178
K+ ELL
Sbjct: 264 KLKKIAELLCKR 275
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.8 bits (185), Expect = 6e-16
Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 12/140 (8%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA---EIVKSLLEWPGN 73
+ A+ G + + LL E + +N + + +H + + I LL+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH--- 208
Query: 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRS 132
++ + G+TPL +A + + LL I ++G T L ++
Sbjct: 209 -GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL----LAVEL 263
Query: 133 EDYATVKTLLEYNADCSAKD 152
+ + L + A D
Sbjct: 264 KLKKIAELLCKRGASTDCGD 283
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.9 bits (175), Expect = 1e-14
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 47 MAQTPLHVSAGYNKAEIVKSLLEWPGND------KVELEAQNMYGETPLHMAAKNGCNEA 100
T +A Y K + +K L + N K + E G T L AA+ G E
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163
Query: 101 AKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159
K+LL GA + A N G L ++ S S+ A LL++ AD + + GKTPL
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Query: 160 DHLSNGPGSAKLRELLLWH 178
L+ L + LL
Sbjct: 224 -ILAVEKKHLGLVQRLLEQ 241
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 1e-07
Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 45/185 (24%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND-- 74
+ Q+ D+ Q+LL ++ N + TPLH + ++ +IV+ LL +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 75 ---------------------------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107
++ + YG T AA G +A K L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 108 GA----------FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL-EYNADCSAKDNEGK 156
GA E G T L + +K LL E AD +A DN G+
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALM----DAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 157 TPLDH 161
L H
Sbjct: 184 NALIH 188
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 3e-07
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWY 128
+ L A +N + + LL GA + + G TPLH +V
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 4e-05
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHG 108
L + ++V+ LLE + Q G TPLH A + + +LLL HG
Sbjct: 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
A + NG TP L+ + AD + D G T
Sbjct: 63 ADPVLRKKNGATPFLLAAIAGSVKLLKLFL----SKGADVNECDFYGFTAFME 111
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.0 bits (175), Expect = 1e-14
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
A L + + + + ++ + G K I+++L +
Sbjct: 193 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM- 251
Query: 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126
L AQ+ G+T L++AA+ G LL +GA +G+ P+
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.0 bits (162), Expect = 6e-13
Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)
Query: 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77
+ D F+ LL L + M +T LH + + ++ + +
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMG 206
Query: 78 L---------EAQNMYGETPLHMAAKNGCNEAAKLLLAH---GAFIEAKANNGMTPLHLS 125
++ E+ + + + L + A+ +NG T L+++
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266
Query: 126 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
R + + V LL+Y AD + G P+D
Sbjct: 267 A----RLGNISIVDALLDYGADPFIANKSGLRPVD 297
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.8 bits (146), Expect = 6e-11
Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 6/204 (2%)
Query: 30 QRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89
L + S N Q HVS E+ + N + ++ +G TPL
Sbjct: 55 PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE---HGNTPL 111
Query: 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149
H E K L+ HG+ N G + L +V + L
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171
Query: 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIV 209
+D+ +T L H+ G ++ + + ++ +E E++ ++
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231
Query: 210 GLHELKIQ---LRKWAKGMLLDER 230
G + I KW +L+ +
Sbjct: 232 GERKDSILENLDLKWIIANMLNAQ 255
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 68.4 bits (166), Expect = 4e-13
Identities = 22/159 (13%), Positives = 39/159 (24%), Gaps = 17/159 (10%)
Query: 29 FQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLL-------EWPGNDKVELEAQ 81
FQ + N L + A + + N ++ + L + +
Sbjct: 28 FQHFISANELSLMTLSYKEA-IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK 86
Query: 82 NMYGETPLHMAAKNGCNEAAK---LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATV 138
+ E +AA GC+ A LLL ++ L+ +
Sbjct: 87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG----HLHVL 142
Query: 139 KTLLEYNADCSAKD--NEGKTPLDHLSNGPGSAKLRELL 175
L E E + L L
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 60.3 bits (145), Expect = 1e-10
Identities = 14/135 (10%), Positives = 26/135 (19%), Gaps = 11/135 (8%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ V+A + + L ++ +AA+NG L
Sbjct: 91 EVICFVAAITGCSSALD-TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149
Query: 109 AFIEAK--ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA---DCSAKDNEGKTPLDHLS 163
L+ + L E +
Sbjct: 150 PTEIMAMIQAENYHAFRLAAEN----GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 205
Query: 164 NGPGSAKLRELLLWH 178
G + LL
Sbjct: 206 G-RGHHNVINFLLDC 219
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 54.1 bits (129), Expect = 1e-08
Identities = 17/151 (11%), Positives = 35/151 (23%), Gaps = 6/151 (3%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76
A++G L RL P+ + ++A ++ L E +
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL-APTEA 188
Query: 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV-----WYSIR 131
Q A G + LL + + V + R
Sbjct: 189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 248
Query: 132 SEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162
++ L + ++
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVTKSECLQGFYM 279
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 49.9 bits (118), Expect = 3e-07
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 48 AQTPLHVSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
L + ++ LL PG L +A + G A LLL+
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338
Query: 107 HG 108
Sbjct: 339 IP 340
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 17/158 (10%), Positives = 33/158 (20%), Gaps = 20/158 (12%)
Query: 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQ------TPLHVSA 56
++ A L + P +L + P
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 245
Query: 57 GYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF- 110
E+ + + +L Q Y L + + LL+
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 305
Query: 111 ----IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
+ L L++ R + LL
Sbjct: 306 ALAPTATIPGDANELLRLAL----RLGNQGACALLLSI 339
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 66.7 bits (161), Expect = 8e-13
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LHV+A E++K L++ + + ++ G TPLH AA G EA ++L+ +
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Query: 109 AFIEAKANNGMTPLHL 124
+EA G T +
Sbjct: 256 CDMEAVNKVGQTAFDV 271
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 64.4 bits (155), Expect = 4e-12
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129
W + + G T LH+AA G E KLL+ + K +G TPLH + +
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243
Query: 130 IRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160
+ L+E D A + G+T D
Sbjct: 244 ----KEEACRILVENLCDMEAVNKVGQTAFD 270
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
A +G E LL GA I +G+T LH +
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
TPLH +A + K E + L+E ++EA N G+T +A ++ +L
Sbjct: 233 WTPLHAAAHWGKEEACRILVEN----LCDMEAVNKVGQTAFDVADEDILGYLEELQ 284
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+ E V LLE ++ N+ G T LH A + + K L+ +GA
Sbjct: 42 AVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
I N G PLH + + L+ A A ++EG TPLD
Sbjct: 98 NINQPDNEGWIPLHAAASC----GYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 65.5 bits (158), Expect = 2e-12
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH +A + IVK L+ G++K + Q+ G+TP+ +AA+ G E L+ G
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDK---QDEDGKTPIMLAAQEGRIEVVMYLIQQG 244
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144
A +EA T + + + V
Sbjct: 245 ASVEAVDATDHTARQ----LAQANNHHNIVDIFDRC 276
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 58.2 bits (139), Expect = 5e-10
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL-LAHGAFIEAKANNGMTPLHLSVWY 128
+ +++ G T LH AA+ K L G+ + + +G TP+ L+
Sbjct: 172 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 231
Query: 129 SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
V L++ A A D T + ++
Sbjct: 232 G----RIEVVMYLIQQGASVEAVDATDHTARQLAQAN-NHHNIVDIFD 274
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 54.4 bits (129), Expect = 7e-09
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH- 107
++P+ + + + + + ++ + T LH A N E ++ L+ H
Sbjct: 1 ESPIKLHTEAAGSYAITEPITRESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHE 56
Query: 108 -------GAFIEAKANNGMTPLHLSVWY 128
GA + A + TPL L+V
Sbjct: 57 AKECIAAGADVNAMDCDENTPLMLAVLA 84
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN 73
P +H +G + + RE+ +N +P +T LH A + AE + L+
Sbjct: 3 PIKLH-TEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58
Query: 74 DKVELEA----QNMYGETPLHMAAKNGCNE 99
+ + A + TPL +A
Sbjct: 59 ECIAAGADVNAMDCDENTPLMLAVLARRRR 88
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 61.4 bits (149), Expect = 2e-11
Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 37/228 (16%)
Query: 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 265
++ G E K +L++ + + R +G R P + +G PG GKT +AR +
Sbjct: 9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAG 64
Query: 266 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQ 322
+ +D V FVG + R + A+ I+F+DE + +
Sbjct: 65 EARV-------PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 117
Query: 323 KADDK---DYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTK 373
+ D + L +++ MDG +VV+ A R + R R +
Sbjct: 118 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDR 172
Query: 374 FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421
+ + + +IL I G L + +A
Sbjct: 173 QIAIDAPDVKGREQILRIH---------ARGKPLAEDVDLALLAKRTP 211
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.7 bits (143), Expect = 1e-10
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LH++ + + LL + L+ QN G+T LH+AA G + L A G
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165
A + G T LHL+ + LL+ ++
Sbjct: 69 AGVLVAERGGHTALHLACRV----RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.0 bits (136), Expect = 1e-09
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 85 GETPLHMAAKNGCNEAAKLLLAHGA---FIEAKANNGMTPLHLSVWY 128
G+T LH+A + LL A +++ + + G T LHL+
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL 55
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.5 bits (132), Expect = 3e-09
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
T A RLLR+ + LN+ P +TPLH++ A +++ LL+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA----G 215
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
+ A+ G TPL A A+LL AHGA
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 1e-08
Identities = 41/237 (17%), Positives = 73/237 (30%), Gaps = 77/237 (32%)
Query: 17 IHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKA------------- 61
+H LL L+ +N + QT LH++A +A
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV 71
Query: 62 --------------------EIVKSLLE------WPGNDKVELEAQNMYGETPLHMAA-- 93
LL+ +D ++Q+ +T AA
Sbjct: 72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131
Query: 94 --KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS-------------------------- 125
N NE +EA+ +G TPLH++
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191
Query: 126 ----VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+ ++ ++ + ++ LL+ AD +A+ G+TPL + + L LL H
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL-GSALLRPNPILARLLRAH 247
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 1e-08
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140
+ G TPLH+A + +LLL GA A+ G TPL ++ + +
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG----SALLRPNPILARL 243
Query: 141 LLEYNADCSAKDNEG 155
L + A + +G
Sbjct: 244 LRAHGAP---EPEDG 255
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 116 NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS---AKDNEGKTPLDH 161
+G T LHL+V + + + LL ++A +++ G+T L
Sbjct: 7 EDGDTALHLAVIH----QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL 51
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.5 bits (137), Expect = 5e-10
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL-AH 107
Q PLH +A ++++ G K + Q+ G TPL A G +AA LL+ +
Sbjct: 139 QIPLHRAASVGSLKLIE---LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 195
Query: 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147
GA + N G +++ + K L D
Sbjct: 196 GAEYDLVDNKGAKAEDVAL-------NEQVKKFFLNNVVD 228
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 1e-08
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 109
PLH + N+ V+ LL + L ++ G PLH + +E LL+
Sbjct: 2 YPLHQACMENEFFKVQELLHSKPSL---LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58
Query: 110 FIEAKANNGMTPLHLSVWY 128
+ +
Sbjct: 59 NVNLDDYPDDSGWTPFHIA 77
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (123), Expect = 3e-08
Identities = 37/225 (16%), Positives = 63/225 (28%), Gaps = 70/225 (31%)
Query: 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN----------------- 59
+H + Q LL PSLL +++ + PLH S +
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNL 62
Query: 60 -----------------KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
+ + K +L G T LH+A E ++
Sbjct: 63 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122
Query: 103 LLLAHGAFIEAKANNGMTPLHLSVWY------------------------------SIRS 132
L+ +GA + K PLH + ++
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182
Query: 133 EDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176
L+E Y A+ DN+G D N ++++ L
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN----EQVKKFFL 223
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 56.8 bits (137), Expect = 1e-09
Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 37/228 (16%)
Query: 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 265
+++ G E K ++ + + + R + LG K P + +G PGTGKT++A+ +
Sbjct: 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGK----IPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 266 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG---ILFVDEAYRLIPMQ 322
+ + +D V FVG + R ++A+ I+F+DE + +
Sbjct: 68 EAKVPFF-------TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 323 KAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTK 373
A D + L +++ MDG ++VI A R + R R +
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA-----TNRPDVLDPALLRPGRFDR 175
Query: 374 FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421
+ +IL + M L IA
Sbjct: 176 QVVVGLPDVRGREQILKVHMRR---------VPLAPDIDAAIIARGTP 214
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 1e-08
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 85 GETPLHMAAKNGCNEAAKLLL----AHGAFIEAKANNGMTPLHLSVWY 128
G+TPLH+A G A L+ G ++ N TPLHL+V
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 3e-08
Identities = 33/148 (22%), Positives = 54/148 (36%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
TPLH++ V L+ EL+ N +TPLH+A +LL+ G
Sbjct: 4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168
A A +G T HL+ + + A + + D A++ +G T L N
Sbjct: 64 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123
Query: 169 AKLRELLLWHSEEQRKRRALEACSETKA 196
++ LL ++ A
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHA 151
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 5e-08
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 69 EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
+ + AQ G + LH A+ G + L+ GA K + TPL ++
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 220
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 7e-08
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
T LHV+ E V+ LLE + G +PL A +N +LLL HG
Sbjct: 111 LTALHVAVNTECQETVQLLLERGADIDAV---DIKSGRSPLIHAVENNSLSMVQLLLQHG 167
Query: 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
A + A+ +G + LH + V+TL+ AD S K+ TPL
Sbjct: 168 ANVNAQMYSGSSALHSASGRG----LLPLVRTLVRSGADSSLKNCHNDTPLMV 216
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 5e-05
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102
+ LH ++G +V++L+ + +N + +TPL +A + +
Sbjct: 178 SSALHSASGRGLLPLVRTLVRS----GADSSLKNCHNDTPLMVARSRRVIDILR 227
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 117 NGMTPLHLSVWYSIRSEDYATVKTLLEY----NADCSAKDNEGKTPLDH 161
+G TPLH ++ + V L+ + +N +TPL
Sbjct: 2 DGDTPLH----IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 2e-08
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 85 GETPLHMAAKNGCNEAA----KLLLAHGAFIEAKANNGMTPLHLSVWY 128
G++ LH+A + + + AF+ + N TPLHL+V
Sbjct: 2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 3e-07
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140
+ G T LH+A + LLL GA + G +P L+ +
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR----PSTRIQQQ 196
Query: 141 LLEYNADCSAKDNEGK 156
L + + E +
Sbjct: 197 LGQLTLENLQMLPESE 212
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 4e-07
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+T LH++ ++V LL+ + G +P + + L
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADV----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201
Query: 109 A 109
Sbjct: 202 L 202
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 5e-07
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANNGMTPLHLSVWYSIRSEDYATVK 139
N G T LH+A+ +G +LL++ GA + + NG T LHL+V ++ V
Sbjct: 107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL----QNPDLVS 162
Query: 140 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182
LL+ AD + +G +P L+ G S ++++ L + E
Sbjct: 163 LLLKCGADVNRVTYQGYSPY-QLTWGRPSTRIQQQLGQLTLEN 204
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (111), Expect = 1e-06
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN 98
+ LH++ + + + ++ D L QN +TPLH+A
Sbjct: 3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 117 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
+G + LHL++ + ++ ++ + A + ++N +TPL
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 50.6 bits (119), Expect = 8e-08
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
T A + L + +N + +T LH +A N E V LL N
Sbjct: 92 TPLILAARLAIEGMVEDLITADADINAADNSG-KTALHWAAAVNNTEAVNILLMHHANR- 149
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
+AQ+ ETPL +AA+ G EA+K LL + A E + P ++
Sbjct: 150 ---DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER 199
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 49.4 bits (116), Expect = 2e-07
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 69 EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
E ++ A + G+T LH AA EA +LL H A +A+ + TPL L+
Sbjct: 107 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE 166
Query: 129 SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161
Y K LL+ A+ D+ + P D
Sbjct: 167 ----GSYEASKALLDNFANREITDHMDRLPRDV 195
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
+TPL ++A E K+LL+ E + P +A++ ++ +LL
Sbjct: 155 KDETPLFLAAREGSYEASKALLDN----FANREITDHMDRLPRDVASERLHHDIVRLL 208
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 43.2 bits (100), Expect = 2e-05
Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 33/131 (25%)
Query: 61 AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120
A+++ LL G + + GET LH+AA+ +AAK LL GA ++ N G T
Sbjct: 2 AQVISDLLAQ-GAELNA--TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 58
Query: 121 PLHLSVWYSIRSEDYA------------------------------TVKTLLEYNADCSA 150
PLH +V V+ L+ +AD +A
Sbjct: 59 PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118
Query: 151 KDNEGKTPLDH 161
DN GKT L
Sbjct: 119 ADNSGKTALHW 129
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 36/135 (26%)
Query: 11 SAKPATIHGCAQSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLHVSA---GYNKAEI 63
+AK ++ ++ D+ + + + +T LH++ I
Sbjct: 4 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63
Query: 64 VKSLLEWPGN-----------------------------DKVELEAQNMYGETPLHMAAK 94
V L++ GN K +E N GETPL +A +
Sbjct: 64 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123
Query: 95 NGCNEAAKLLLAHGA 109
+LL +
Sbjct: 124 LKHEHCEELLTQALS 138
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 10/132 (7%)
Query: 50 TPLHVSAGYNKAEIVKSLLEWPG--NDKVELEAQNMYGETPLHMAAKN---GCNEAAKLL 104
L + + +K+ L + ET LH+A ++ L
Sbjct: 8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67
Query: 105 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164
+ + ++ + G T LH ++ A + G+TPL ++
Sbjct: 68 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR----GKASIEIANESGETPL-DIAK 122
Query: 165 GPGSAKLRELLL 176
ELL
Sbjct: 123 RLKHEHCEELLT 134
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.5 bits (83), Expect = 0.002
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Query: 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA------NNGMTPLHLSVWYSIRSE 133
A L A K A G + K T LHL+V R
Sbjct: 1 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR-T 59
Query: 134 DYATVKTLLEYNADCSAK 151
V L++ + + +
Sbjct: 60 SLHIVDFLVQNSGNLDKQ 77
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 7e-07
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 108
+ + +N G+T +A G NE L+ A+G
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 1e-05
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
+G L AA G E LL + + A+ G T L +
Sbjct: 1 WG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG 44
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-06
Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 12/163 (7%)
Query: 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75
+ G A GD+ +RLL + N + G + N +
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64
Query: 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 135
++ HGA + G P+HL+V +
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVE------HGADVNVPDGTGALPIHLAVQEGHTAVVS 118
Query: 136 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178
+D +D G TPL L+ G+ L ++L H
Sbjct: 119 FL-----AAESDLHRRDARGLTPL-ELALQRGAQDLVDILQGH 155
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 14/215 (6%)
Query: 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 264
L +G LK +LR + + K H+ G PG GKT +A ++
Sbjct: 8 LDEYIGQERLKQKLRVYLEA-----------AKARKEPLEHLLLFGPPGLGKTTLAHVIA 56
Query: 265 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 324
L V + T + DL I E +E L P +
Sbjct: 57 HEL-GVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEH--LYPAMED 113
Query: 325 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE 384
D I ++ + + P F ++ + ++
Sbjct: 114 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQG 173
Query: 385 LAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419
+ + + TE++ L + A
Sbjct: 174 VMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 208
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (106), Expect = 5e-06
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 13/161 (8%)
Query: 238 VGARRPPHMAFLGNPGTGKTMVARILGRL---------LYMVGILPTDRVTEVQRTDLVG 288
+ R + +G PG GKT + L + L +L D V G
Sbjct: 38 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97
Query: 289 EFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 348
EF K+ ILF+DE + ++ KAD ++A + + G++
Sbjct: 98 EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHC 154
Query: 349 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 389
+ A + ++ I + RR K + + E+ IL
Sbjct: 155 VGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAIL 194
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.4 bits (106), Expect = 6e-06
Identities = 45/277 (16%), Positives = 98/277 (35%), Gaps = 30/277 (10%)
Query: 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 265
++ G + Q+++ + L R AL +G + P + G PGTGKT++AR +
Sbjct: 4 DDVGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 266 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQ 322
L + +++ + G + R+ +EA I+F+DE + P +
Sbjct: 61 ETGAFFFL-------INGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 113
Query: 323 KADDKDYGIEALEEIMS----VMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 378
+ + + ++++ + V+V+ A G R +
Sbjct: 114 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 173
Query: 379 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 438
E+ +I M + L +AAL + + R++M+ ++
Sbjct: 174 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 233
Query: 439 PMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475
++A + +T++D L
Sbjct: 234 DETIDA-------------EVMNSLAVTMDDFRWALS 257
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 35/256 (13%), Positives = 64/256 (25%), Gaps = 30/256 (11%)
Query: 236 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG 295
L+ P LG PGTGKT+ R L L + +
Sbjct: 36 LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 95
Query: 296 PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD------------G 343
+ F+ + + +A ++ G
Sbjct: 96 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 155
Query: 344 GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLY 403
+ + F+ + +++ IL +
Sbjct: 156 AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA-------- 207
Query: 404 GFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDEL 462
L + I +I T + + N G +AR +D L S +
Sbjct: 208 --GLAEGSYSEDILQMIADITGAQTPLDTNRG-------DARLAIDILYRSAYAAQQNGR 258
Query: 463 RTITLEDLEAGLKLLL 478
+ I ED+ K +L
Sbjct: 259 KHIAPEDVRKSSKEVL 274
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGL-KVGARRPPHMAFLGNPGTGKTMVARIL 263
L + G ++L+ W ++ K G+ G PG GKT A ++
Sbjct: 13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72
Query: 264 GRLLYM 269
+ L
Sbjct: 73 AQELGY 78
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 43.3 bits (101), Expect = 4e-05
Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 5/150 (3%)
Query: 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNPGTGKTMVARIL 263
S V H ++ ++ K + L ++ +G G+GKT++A+ L
Sbjct: 29 FSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 88
Query: 264 GRLLY--MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 321
+ L + T + V + + +++A+ GI+F+DE ++ +
Sbjct: 89 AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 148
Query: 322 --QKADDKDYGIEALEEIMSVMDGGKVVVI 349
++ +D E +++ + + G +V I
Sbjct: 149 SENRSITRDVSGEGVQQALLKIVEGSLVNI 178
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 42.9 bits (100), Expect = 4e-05
Identities = 51/300 (17%), Positives = 98/300 (32%), Gaps = 28/300 (9%)
Query: 200 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNPGTGKT 257
E+ +EL I+G + K + A + RR L + P ++ +G G GKT
Sbjct: 7 EIVSELDQHIIGQADAKRAV---AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 63
Query: 258 MVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-----PKTRRRIKEAEGGILFV 312
+AR L + T+ VG+ V + GI+F+
Sbjct: 64 EIARRLAK--LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFI 121
Query: 313 DEAYRLIPMQKADDKDYGIEA-LEEIMSVMDGGKV-----------VVIFAGYSEPMKRV 360
DE ++ + D E +++ +++G V ++ A + + R
Sbjct: 122 DEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 181
Query: 361 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED-SLLYGFKLHSSCSMDAIAAL 419
R+ ++ + +IL + TE L + +
Sbjct: 182 SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 241
Query: 420 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD-ELRTITLEDLEAGLKLLL 478
I + + N G L E L ++SF D + + I + L ++
Sbjct: 242 IAEAAFRVNEKTENIGARR--LHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 299
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.0 bits (94), Expect = 6e-05
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 67 LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 104
++E ++ Q+ + +T ++ NG + A++L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.1 bits (89), Expect = 3e-04
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128
L AA+ G ++ ++L+A+GA G +PLHL+ Y
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLAAQY 44
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.3 bits (87), Expect = 5e-04
Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 33/154 (21%)
Query: 50 TPLHVSAGYNKAEIVKSLLE----------------------------WPGNDKVELEAQ 81
L +A + + V+ L+ V +A+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141
TPLHMAA G ++LL HGA + AK MT LH + + V+ L
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH----NHQEVVELL 119
Query: 142 LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175
++Y AD + KT +S G+ L E+L
Sbjct: 120 IKYGADVHTQSKFCKTAF-DISIDNGNEDLAEIL 152
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 40.0 bits (93), Expect = 4e-04
Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 11/175 (6%)
Query: 183 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 242
+R KA+ + + + G L+
Sbjct: 63 AQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYA 122
Query: 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 302
+ G +GKT + LG + D+ V+ + + +
Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIA 177
Query: 303 KEAEG-GILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDG----GKVVVIFA 351
+ ++ +D +I + GI +++S + VVI +
Sbjct: 178 RAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIAS 232
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (91), Expect = 7e-04
Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 240 ARRPPHMAFL-GNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKT 298
RR + L G G GKT +A L + + + D+ G
Sbjct: 35 CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 94
Query: 299 -RRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF 350
+R K + ILF+DE + +I A ++A I ++ GK+ VI
Sbjct: 95 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIG 152
Query: 351 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 390
+ + + + RR K + + EE +I++
Sbjct: 153 STTYQEFSNIFEKDRALARRFQKID-ITEPSIEETVQIIN 191
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 39.5 bits (91), Expect = 7e-04
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Query: 228 DERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287
++ + AL L + G+ GTGK+ R L LL + + V+ +++
Sbjct: 13 EDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP-NVEMI 71
Query: 288 GEFVGHTGPKTRRRIKEAEGGILFVDEA 315
++ R+ L V E
Sbjct: 72 PDWATVLSTNVIRKPTPVVDLPLGVSED 99
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.2 bits (84), Expect = 7e-04
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 8/118 (6%)
Query: 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106
M + + VK + + LE
Sbjct: 1 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE-------- 52
Query: 107 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164
A N + ++ + VK LL AD + K +G T L+ N
Sbjct: 53 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN 110
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 38.8 bits (89), Expect = 7e-04
Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 5/166 (3%)
Query: 236 LKVGARRPP-HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT 294
K R P + G P +GKT +A + + +
Sbjct: 32 TKNSDRTPLVSVLLEGPPHSGKTALAAKIA---EESNFPFIKICSPDKMIGFSETAKCQA 88
Query: 295 GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354
K +++ + VD+ RL+ + + ++ +
Sbjct: 89 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 148
Query: 355 EPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTED 399
++ + + H + + E+L + L + N + ++
Sbjct: 149 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 194
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.001
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 31/126 (24%)
Query: 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL------------------------ 122
L ++ G + + ++ + G+T L
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62
Query: 123 -----HLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLD-HLSNGPGSAKLRELL 175
+ + + K L+E A A + +T D G + + L
Sbjct: 63 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122
Query: 176 LWHSEE 181
E+
Sbjct: 123 YGVQEK 128
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (83), Expect = 0.001
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 81 QNMYGETPLHMAAKNGCNEAAKLLLA 106
++ +G P+ +A + G + A+ L A
Sbjct: 98 RDAWGRLPVDLAEELGHRDVARYLRA 123
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 38.0 bits (87), Expect = 0.001
Identities = 40/283 (14%), Positives = 80/283 (28%), Gaps = 66/283 (23%)
Query: 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 264
L +G +K +L + K+ H+ G PG GKT +A I+
Sbjct: 8 LDEFIGQENVKKKLSLALEAA-----------KMRGEVLDHVLLAGPPGLGKTTLAHIIA 56
Query: 265 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 324
I T V++ D+ G +LF+DE +RL +
Sbjct: 57 S-ELQTNIHVTSGPVLVKQGDMA-----------AILTSLERGDVLFIDEIHRLNKAVEE 104
Query: 325 DDKDYGIEALEEIMSVMDGG---------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 375
+ +IM ++ A + + R
Sbjct: 105 LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL-----SSPLRSRFGIIL 159
Query: 376 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435
+ + +EL +I+ + + + + IA + + G
Sbjct: 160 ELDFYTVKELKEIIKRAASLMDVE--------IEDAAAEMIA-------------KRSRG 198
Query: 436 LVDPMLVNARENLD-LRLSFDCLDTDELRTITLEDLEAGLKLL 477
R + + D L + I + + +++L
Sbjct: 199 -------TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 234
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 38.0 bits (88), Expect = 0.002
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 249 LGNPGTGKTMVARILGRL-----LYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRR-- 300
G G GK +VAR++ +L V + ++ +L G G TG + +
Sbjct: 29 TGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEG 88
Query: 301 RIKEAEGGILFVDE 314
+ A+GG LF+DE
Sbjct: 89 FFELADGGTLFLDE 102
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 38.2 bits (87), Expect = 0.002
Identities = 29/273 (10%), Positives = 72/273 (26%), Gaps = 47/273 (17%)
Query: 230 RRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL---------------YMVGILP 274
+ L + +G G GKT +A+ + + P
Sbjct: 33 LNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 92
Query: 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--------AEGGILFVDEAYRLI--PMQKA 324
G + G +K ++ +DE ++ P A
Sbjct: 93 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA 152
Query: 325 DDKDYGIEALEEIMSVMDGGKVVVIFA-GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSE 383
+D + EEI S ++ + + + ++ H + S
Sbjct: 153 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSR 212
Query: 384 ELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVN 443
EL IL + + + + + +K +
Sbjct: 213 ELYTILEQRAELGLR---------DTVWEPRHLELISDVYGEDKGGDG-----------S 252
Query: 444 ARENLDL-RLSFDCLDTDELRTITLEDLEAGLK 475
AR + +++ + + +++ + + +
Sbjct: 253 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.96 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.95 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.95 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.95 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.95 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.95 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.93 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.93 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.93 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.93 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.93 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.92 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.92 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.92 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.91 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.91 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.91 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.9 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.9 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.9 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.89 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.89 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.88 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.87 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.87 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.87 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.87 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.86 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.85 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.84 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.84 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.84 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.83 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.82 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.82 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.82 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.81 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.81 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.8 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.8 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.79 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.79 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.79 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.77 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.76 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.76 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.76 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.75 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.71 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.71 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.7 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.69 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.65 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.59 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.52 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.49 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.31 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.22 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.83 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.53 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.47 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.84 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.83 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.79 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.77 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.75 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.7 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.67 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.67 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.67 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.65 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.58 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.52 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.5 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.49 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.46 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.46 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.44 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.43 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.38 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.35 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.33 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.31 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.31 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.3 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.29 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.27 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.25 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.24 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.22 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.22 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.22 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.21 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.2 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.16 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.16 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.15 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.13 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.12 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.08 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.04 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.96 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.96 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.92 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.9 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.85 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.85 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.84 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.73 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.72 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.68 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.58 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 96.45 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.45 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.37 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 96.35 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 96.34 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.21 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.16 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 96.09 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.07 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 95.9 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.89 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.88 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.88 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.87 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 95.84 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.82 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.79 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.62 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 95.56 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.49 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.26 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.24 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 95.23 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.11 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.08 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 95.04 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.0 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.98 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.9 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.86 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.81 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.79 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.63 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 94.63 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.62 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.56 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.45 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 94.45 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.24 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.21 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 94.16 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.08 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.06 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 94.02 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.02 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 94.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.99 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 93.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.95 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 93.93 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 93.93 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 93.9 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.83 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 93.8 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.78 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.76 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.74 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.73 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.68 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 93.67 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 93.63 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.58 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.51 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.37 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.33 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.25 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.24 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 93.23 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.21 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 93.18 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.12 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.1 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 93.07 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.06 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 93.04 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.99 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.97 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 92.93 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.89 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.82 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 92.8 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.77 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.74 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.74 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 92.72 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.72 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.7 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 92.64 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.58 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.4 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.32 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.29 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.23 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 92.16 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.14 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.14 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.9 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.84 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.81 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.79 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.74 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.69 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.6 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 91.55 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.53 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.51 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.5 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.48 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.4 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.24 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.22 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.22 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.17 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.08 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.94 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.9 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.88 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 90.68 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 90.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 90.63 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.61 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.54 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.43 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.42 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.29 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 90.28 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.14 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.14 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.88 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 89.64 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 89.56 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.48 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.38 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.26 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 89.07 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 88.99 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 88.98 | |
| d1qzma_ | 94 | ATPase domain of protease Lon (La) {Escherichia co | 88.91 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.43 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.11 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.85 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.82 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 87.79 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 87.74 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 87.57 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.79 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.77 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 86.54 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 86.19 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.98 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 85.47 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.27 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 85.17 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 85.1 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.52 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.07 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.54 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 83.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 83.05 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 82.73 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.04 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 81.71 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 81.61 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 80.62 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 80.43 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-35 Score=267.16 Aligned_cols=233 Identities=20% Similarity=0.286 Sum_probs=184.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|++++|++++|++|.+.+..+. ++.....++...+.++||+||||||||++|+++|++++. +++.++
T Consensus 9 ~t~~Di~Gl~~~k~~l~e~v~~~~----~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~-------~~~~i~ 77 (256)
T d1lv7a_ 9 TTFADVAGCDEAKEEVAELVEYLR----EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS 77 (256)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHH----CGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred CCHHHHhchHHHHHHHHHHHHHHH----CHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCC-------CEEEEE
Confidence 358999999999999998765443 344455566667889999999999999999999999976 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++.+.|+|+++++++++|+.|+ +|||||||+|.+.+.+++.. ++...+++++|+..|++ ..++||+||
T Consensus 78 ~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatT 157 (256)
T d1lv7a_ 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157 (256)
T ss_dssp SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred hHHhhhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 999999999999999999998874 48999999999998876442 35667889999999974 456777665
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... + +|++++ ||+..|+|++|+.++|.+|++.++.+. .+..+++...++..+.
T Consensus 158 n~~~~--l---d~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~---------~~~~~~~~~~la~~t~--------- 214 (256)
T d1lv7a_ 158 NRPDV--L---DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAAIIARGTP--------- 214 (256)
T ss_dssp SCTTT--S---CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCT---------
T ss_pred CCccc--C---CHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCC---------CcCcccCHHHHHHhCC---------
Confidence 43322 2 899986 999999999999999999999998764 3445667666666554
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..++++|++++++|...+.. +....|+.+||+.|++++.
T Consensus 215 G~s~adi~~l~~~A~~~a~~---------~~~~~i~~~d~~~Al~rv~ 253 (256)
T d1lv7a_ 215 GFSGADLANLVNEAALFAAR---------GNKRVVSMVEFEKAKDKIM 253 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHh
Confidence 45688999999998766532 2234689999999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-34 Score=262.58 Aligned_cols=229 Identities=23% Similarity=0.319 Sum_probs=179.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
.+|++++|++++|++|++.+..+..+......+ ...+.++||+||||||||++|+++|++++. +++.++
T Consensus 6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g----~~~~~giLl~GppGtGKT~la~aia~~~~~-------~~~~i~ 74 (247)
T d1ixza_ 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG----ARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 74 (247)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT----CCCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcC----CCCCceEEEecCCCCChhHHHHHHHHHcCC-------CEEEEE
Confidence 368999999999999999877766666555544 446789999999999999999999998876 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++.++|+|+++++++++|+.|+ ++||||||+|.++.++... .+....+++++|+..|++ ..++||+||
T Consensus 75 ~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tT 154 (247)
T d1ixza_ 75 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 154 (247)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred hHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 999999999999999999998764 4899999999999877543 345567889999999974 456777665
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++++ ||+.+|+|+.|+.++|.+|++.++.+.. ...+++.+.++..+.
T Consensus 155 n~~~~-----ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~---------~~~~~~~~~la~~t~--------- 211 (247)
T d1ixza_ 155 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP---------LAEDVDLALLAKRTP--------- 211 (247)
T ss_dssp SCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHTCT---------
T ss_pred CCccc-----cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccC---------CccccCHHHHHHHCC---------
Confidence 43222 2899985 9999999999999999999999997643 345556665655544
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
...+++|+++++.|...+..+ ....|+.+||++|+
T Consensus 212 g~s~~di~~lv~~A~l~a~~~---------~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 212 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 246 (247)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHhh
Confidence 456789999999887665332 22479999999985
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.5e-34 Score=262.01 Aligned_cols=239 Identities=18% Similarity=0.291 Sum_probs=186.9
Q ss_pred HHhhhhchHHHHHHHHHHHHH-HhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 204 ELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
.|++++|++.+|++|++.+.. +..+.... ..+..++.++|||||||||||++|+++|++++. +++.++
T Consensus 2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~----~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~-------~~~~i~ 70 (258)
T d1e32a2 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFK----AIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 70 (258)
T ss_dssp CGGGCCSCSHHHHHHHHHHHHHHHCHHHHH----HCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-------EEEEEC
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCHHHHH----hCCCCCCceeEEecCCCCCchHHHHHHHHHhCC-------eEEEEE
Confidence 478999999999999997543 44444444 345567889999999999999999999999877 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.+.|+|++...++++|+.| .++||||||+|.+.+++....++....+++.++..++. ..++||+||+..
T Consensus 71 ~~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~ 150 (258)
T d1e32a2 71 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 150 (258)
T ss_dssp HHHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCG
T ss_pred chhhcccccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCc
Confidence 99999999999999999999876 45999999999999988776677777788888887764 456777765433
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.. + +|++++ ||+.+|+|+.|+.++|.+|++.++++.. +..+++.+.++..+.+ .+
T Consensus 151 ~~--l---d~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~---------~~~~~~~~~la~~t~G---------~s 207 (258)
T d1e32a2 151 NS--I---DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETHG---------HV 207 (258)
T ss_dssp GG--S---CGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSC---------BCTTCCHHHHHHHCTT---------CC
T ss_pred cc--c---chhhhhcccccceeECCCCCHHHHHHHhhhhccCcc---------cccccchhhhhhcccC---------CC
Confidence 32 2 899988 9999999999999999999999987643 3455666666666654 45
Q ss_pred cchhHHHHHHHHHHhhhhh----c--CCCCCh--hhhhcccHHHHHHHHHH
Q 011578 434 GGLVDPMLVNARENLDLRL----S--FDCLDT--DELRTITLEDLEAGLKL 476 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~----~--~~~~~~--~~~~~i~~~d~~~al~~ 476 (482)
+++|.+++++|...+..|- . .+.... .+...||++||+.||++
T Consensus 208 ~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 208 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhCc
Confidence 8889999998877765542 1 112221 23447999999999863
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.6e-31 Score=244.19 Aligned_cols=240 Identities=16% Similarity=0.246 Sum_probs=172.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
+|++++|++++|++|.+.+. ++..+++.....+...+.++||+||||||||++|+++|++++. +++.+++
T Consensus 5 ~f~di~G~~~~k~~l~~~i~---~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~-------~~~~~~~ 74 (265)
T d1r7ra3 5 TWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 74 (265)
T ss_dssp SCSSCSSSSCCCCHHHHHTH---HHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred CHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCC-------cEEEEEH
Confidence 57899999999999998753 3333333333345557789999999999999999999999987 8999999
Q ss_pred ccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++.+.++|+++..++.+|..| .+|||||||+|.+..++.... .....++++.|+..|++ ..++||+||+
T Consensus 75 ~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn 154 (265)
T d1r7ra3 75 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 154 (265)
T ss_dssp HHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCB
T ss_pred HHhhhccccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 9999999999999999999765 459999999999998765332 23456788999999974 4567777654
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... + +|++++ ||+.+|+|+.|+.++|.+||+.++++.. ...+++.+.++..+. .
T Consensus 155 ~~~~--l---d~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~---------~~~~~~l~~la~~t~---------g 211 (265)
T d1r7ra3 155 RPDI--I---DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------G 211 (265)
T ss_dssp SCTT--T---SCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-------------CCCCHHHHHHHC---------S
T ss_pred Cchh--C---CHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCC---------chhhhhHHHHHhcCC---------C
Confidence 3332 2 899976 9999999999999999999999887643 234556566666665 4
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCC-------hhhhhcccHHHHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLD-------TDELRTITLEDLEAGLKL 476 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~-------~~~~~~i~~~d~~~al~~ 476 (482)
.++++|.+++++|...+..+....... ......++.+|+..++.+
T Consensus 212 ~s~~di~~lv~~A~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~i~~ 263 (265)
T d1r7ra3 212 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR 263 (265)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC------------------------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccchHHHcc
Confidence 568899999999988776554321111 112335677888877654
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-28 Score=222.87 Aligned_cols=159 Identities=25% Similarity=0.387 Sum_probs=122.1
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC--------------------
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-------------------- 73 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------------- 73 (482)
.||||+||..|+.+.|+.||...+..++.++.. |+||||+|+..|+.+++++|+++|++
T Consensus 1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 79 (229)
T d1ixva_ 1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 79 (229)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTT-SCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCC-CCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence 478999999999999998888888888888876 99999999999999999999886553
Q ss_pred -----------------------------------------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHh
Q 011578 74 -----------------------------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106 (482)
Q Consensus 74 -----------------------------------------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 106 (482)
.+.+.+.+|..|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~ 159 (229)
T d1ixva_ 80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 159 (229)
T ss_dssp HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence 123344456677788888888888888888887
Q ss_pred CC-CCccccccCCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 107 HG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 107 ~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
.| .+++.+|.+|+||||+|+ ..|+.+++++|++ .|+|++.+|.+|+||||+|+ ..+++++|++.|+|
T Consensus 160 ~~~~~in~~d~~g~TpLh~A~----~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~----~~~~~~~Ll~~g~d 228 (229)
T d1ixva_ 160 LGKSAVNWQDKQGWTPLFHAL----AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL----NEQVKKFFLNNVVD 228 (229)
T ss_dssp TTCCCSCCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS----CHHHHHHHHHHCCC
T ss_pred cccccccccccccCCchhhhc----ccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh----hHHHHHHHHHcCCC
Confidence 76 567777788888888888 6777888888775 47888888888888885544 24677777777653
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.5e-28 Score=220.31 Aligned_cols=166 Identities=28% Similarity=0.403 Sum_probs=100.0
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|+||||+||..|+.++++.++..... ....... +.+++++|+..|+.+++++|++ .+++++.+|..|.
T Consensus 31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~~~Ll~----~~~d~~~~d~~g~ 104 (223)
T d1uoha_ 31 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA-GWSPLHIAASAGRDEIVKALLG----KGAQVNAVNQNGC 104 (223)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCC
T ss_pred cCcCCCCCCHHHHHHHhhhhcccccccccccc-ccccccc-ccccccccccccccchhHHHhc----cCceeEeeCCCCC
Confidence 35567899999999999999998887754332 2222222 5566666666666666666665 3445555566666
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|++.|++++.+|..|+||||+|+. .
T Consensus 105 tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~----~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~-~ 179 (223)
T d1uoha_ 105 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA----AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD-E 179 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH-T
T ss_pred chhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhh----hcCCcchhhhhccccceeeeccCCCCceeccccc-c
Confidence 6666666666666666666666666655656666666655 5555555555555566666666666666633333 3
Q ss_pred CChHHHHHHHhhhHHHH
Q 011578 167 GSAKLRELLLWHSEEQR 183 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~ 183 (482)
++.+++++|++.|++++
T Consensus 180 g~~~~v~~LL~~Gad~~ 196 (223)
T d1uoha_ 180 ERVEEAKLLVSQGASIY 196 (223)
T ss_dssp TCHHHHHHHHHTTCCSC
T ss_pred CcHHHHHHHHHCCCCCC
Confidence 34455555555555444
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=3.6e-28 Score=224.66 Aligned_cols=167 Identities=26% Similarity=0.299 Sum_probs=136.8
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC--------------
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-------------- 73 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------- 73 (482)
.++..|.||||+||..|+.++++.|++ .+.+++..+.. |+||||+|+..++.+++++|++....
T Consensus 40 ~~~~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~i~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~ 117 (255)
T d1oy3d_ 40 LQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117 (255)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred CcCCCCCCccchHHhhccccccccccc-ccccccccccc-cchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHh
Confidence 345667788888888888888877774 45667777665 78888888888888887777653221
Q ss_pred -----------------------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccc-cccCCCccee
Q 011578 74 -----------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANNGMTPLH 123 (482)
Q Consensus 74 -----------------------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpLh 123 (482)
.+.+++.+|..|.||||+||..++.+++++|++++++++. .+..|.||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~ 197 (255)
T d1oy3d_ 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197 (255)
T ss_dssp --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred hhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccccc
Confidence 2445667788999999999999999999999999998885 4678999999
Q ss_pred eehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 124 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 124 ~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
+|+ ..|+.+++++|+++|+|++.+|..|+||||+ |...++.+++++|+++||+
T Consensus 198 ~A~----~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~-A~~~~~~~i~~~Ll~~Ga~ 250 (255)
T d1oy3d_ 198 LAV----EAQAASVLELLLKAGADPTARMYGGRTPLGS-ALLRPNPILARLLRAHGAP 250 (255)
T ss_dssp HHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHTSSCHHHHHHHHHTTCC
T ss_pred ccc----cccHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCHHHHHHHHHcCCC
Confidence 999 8889999999999999999999999999955 5567789999999999985
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.2e-27 Score=204.02 Aligned_cols=152 Identities=29% Similarity=0.443 Sum_probs=139.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
..||.||..|+++.|++||.+++.++|..+.. |+||||+|+ .|+.+++++|++ .+.+++..+..|.+||++++.
T Consensus 4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~-g~t~L~~A~-~~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~~~~ 77 (156)
T d1bd8a_ 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMM-FGSTAIALELLK----QGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT-SCCHHHHSC-TTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCC-CCccccccc-cccccccccccc----ccccccccccccccccccccc
Confidence 46999999999999999999889999999886 999999987 488999999999 577889999999999999999
Q ss_pred cCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHH
Q 011578 95 NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLREL 174 (482)
Q Consensus 95 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~l 174 (482)
.++.+++++++++|++++.+|.+|+||||+|+ ..|+.+++++|+ .|++++.+|.+|+||||+| ...++.+++++
T Consensus 78 ~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~----~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A-~~~g~~~iv~~ 151 (156)
T d1bd8a_ 78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAV----QEGHTAVVSFLA-AESDLHRRDARGLTPLELA-LQRGAQDLVDI 151 (156)
T ss_dssp TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHH-HHSCCHHHHHH
T ss_pred cccccccccccccccccccccCCCCeeecccc----cccccccccccc-ccccccccCCCCCCHHHHH-HHcCCHHHHHH
Confidence 99999999999999999999999999999999 788999999887 6899999999999999555 55677889999
Q ss_pred HHhh
Q 011578 175 LLWH 178 (482)
Q Consensus 175 L~~~ 178 (482)
|++|
T Consensus 152 Ll~h 155 (156)
T d1bd8a_ 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9875
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.1e-28 Score=219.80 Aligned_cols=163 Identities=29% Similarity=0.375 Sum_probs=148.0
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
..+.|+.+|..|+++.|+.+|...+..++..|.. |+||||+||..|+.+++++|+. .+......+..+.++++++
T Consensus 3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~-G~TpLh~Aa~~g~~e~~~~l~~----~~~~~~~~~~~~~~~~~~~ 77 (223)
T d1uoha_ 3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLHIA 77 (223)
T ss_dssp SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----HTCCSCCCCTTCCCHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCC-CCCHHHHHHHhhhhcccccccc----ccccccccccccccccccc
Confidence 4678999999999999999999999999999987 9999999999999999999999 4666777788899999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+..++.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|++++.+|..|.||||++ ...+...+.
T Consensus 78 ~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~----~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a-~~~~~~~~~ 152 (223)
T d1uoha_ 78 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA----SKNRHEIAVMLLEGGANPDAKDHYEATAMHRA-AAKGNLKMI 152 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHH
T ss_pred ccccccchhHHHhccCceeEeeCCCCCchhhHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCccchhh-hhcCCcchh
Confidence 9999999999999999999999999999999999 77899999999999999999999999999555 445677788
Q ss_pred HHHHhhhHHHHHH
Q 011578 173 ELLLWHSEEQRKR 185 (482)
Q Consensus 173 ~lL~~~~~~~~~~ 185 (482)
++|...+.+.+.+
T Consensus 153 ~~L~~~~~~i~~~ 165 (223)
T d1uoha_ 153 HILLYYKASTNIQ 165 (223)
T ss_dssp HHHHHTTCCSCCC
T ss_pred hhhccccceeeec
Confidence 8888887765544
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.93 E-value=1.7e-26 Score=217.68 Aligned_cols=145 Identities=28% Similarity=0.308 Sum_probs=106.0
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCC----------------
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK---------------- 75 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~---------------- 75 (482)
.+.|+||.||..|+++.|++||++ |.++|..+.. |+||||+|+..|+.++|++|++++.+..
T Consensus 39 ~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~-G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~ 116 (291)
T d1s70b_ 39 DDGAVFLAACSSGDTEEVLRLLER-GADINYANVD-GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116 (291)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCC-CCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence 456999999999999999999965 5778988886 9999999999999999999998654300
Q ss_pred -------------------------------------------------------------------------cccccCc
Q 011578 76 -------------------------------------------------------------------------VELEAQN 82 (482)
Q Consensus 76 -------------------------------------------------------------------------~~~~~~~ 82 (482)
.+....+
T Consensus 117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (291)
T d1s70b_ 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196 (291)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence 0111223
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..|.||||+|+..|+.+++++|++.|+++|.++.+|+||||+|+ ..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus 197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~----~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A 272 (291)
T d1s70b_ 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA----HWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272 (291)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 45666667777777777777777777777766777777777777 56667777777777777777777777777444
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.4e-26 Score=195.67 Aligned_cols=153 Identities=25% Similarity=0.343 Sum_probs=140.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
++||.||..|+.+.|+.|++ .+.++|..+.. |+||||+|+ .|+.+++++|++ .+++++.++..|.+||+.++.
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~d~~-g~TpL~~A~-~~~~ei~~~Ll~----~~a~~~~~~~~~~~~l~~~~~ 75 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQ-NNVNVNAQNGF-GRTALQVMK-LGNPEIARRLLL----RGANPDLKDRTGFAVIHDAAR 75 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTT-SCCHHHHCC-SSCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCcCccCCc-ccccccccc-cccccccccccc----cccccccccccCccccccccc
Confidence 79999999999999999985 57789999886 999999886 789999999999 578899999999999999999
Q ss_pred cCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCC-CccccCCCCCChhhhhhcCCCChHHHH
Q 011578 95 NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPGSAKLRE 173 (482)
Q Consensus 95 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpl~~~a~~~~~~~~~~ 173 (482)
.++..++++|+..+.+++..|..|.+|||+|+ ..++.+++++|+++|+ +++.+|..|+||||+|+ ..++.++++
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~----~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~-~~~~~~iv~ 150 (156)
T d1ihba_ 76 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA----KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR-LYGRNEVVS 150 (156)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH-HTTCHHHHH
T ss_pred cccccccccccccccccccccccccccccccc----ccccccccccccccccccccccCCCCCCHHHHHH-HcCCHHHHH
Confidence 99999999999999999999999999999999 8889999999999876 89999999999995555 567888999
Q ss_pred HHHhhh
Q 011578 174 LLLWHS 179 (482)
Q Consensus 174 lL~~~~ 179 (482)
+|+++|
T Consensus 151 ~Ll~~G 156 (156)
T d1ihba_ 151 LMQANG 156 (156)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 998875
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=8e-27 Score=215.47 Aligned_cols=168 Identities=26% Similarity=0.301 Sum_probs=144.3
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhC--CCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLREN--PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~--~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
-..+|.||||+||..|+.+.++.||..+ ...++..+.. |.||||+||..|+.+++++|++ .|++++.+|..|+
T Consensus 5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~-g~TpL~~A~~~g~~~iv~~Ll~----~ga~i~~~d~~g~ 79 (255)
T d1oy3d_ 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYA----AGAGVLVAERGGH 79 (255)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTSC
T ss_pred CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCC-CCCccchHHhhccccccccccc----ccccccccccccc
Confidence 3578999999999999999999999754 2346677776 9999999999999999999999 5889999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCC-----------------------------------------------CccccccCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGA-----------------------------------------------FIEAKANNGM 119 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga-----------------------------------------------~~~~~d~~g~ 119 (482)
||||+|+..++.+++++|++.+. +++.+|.+|+
T Consensus 80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~ 159 (255)
T d1oy3d_ 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159 (255)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence 99999999999999999976432 3456677899
Q ss_pred cceeeehhhccCCChHHHHHHHhhCCCCcccc-CCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 120 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAK-DNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 120 tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~-d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
||||+|+ ..++.+++++|+++|++++.. +..|.||||+|+. .++.+++++|+++|++++.+.
T Consensus 160 TpLh~A~----~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~-~~~~~~v~~Ll~~gadin~~d 222 (255)
T d1oy3d_ 160 TPLHVAV----IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTARM 222 (255)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTCCC
T ss_pred ccccccc----cccccccccchhccccccccccccccccccccccc-ccHHHHHHHHHHCCCCCCCCC
Confidence 9999999 888999999999999998864 6789999966554 567889999999998876543
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.93 E-value=7.7e-27 Score=218.11 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=125.0
Q ss_pred cccccCCCCCchHhHHHHHcCCHHHHHHHHh-------hCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCc
Q 011578 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLR-------ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (482)
Q Consensus 4 ~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~-------~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 76 (482)
+.+......|.||||+||..|+.++|+.|+. ..|.++|..+.. |+||||+|+..|+.++|++|+++ |+
T Consensus 24 ~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~-G~TpLh~A~~~g~~~iv~~Ll~~----Ga 98 (277)
T d2fo1e1 24 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-ENTPLMLAVLARRRRLVAYLMKA----GA 98 (277)
T ss_dssp TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHT----TC
T ss_pred CCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCC-CCeeecccccccccccccccccc----cc
Confidence 3444444568999999999999988877653 457889988876 99999999999999999999995 44
Q ss_pred ccccCcCC------------------------------------------------------------------------
Q 011578 77 ELEAQNMY------------------------------------------------------------------------ 84 (482)
Q Consensus 77 ~~~~~~~~------------------------------------------------------------------------ 84 (482)
+++.+|..
T Consensus 99 d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (277)
T d2fo1e1 99 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178 (277)
T ss_dssp CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccc
Confidence 45544444
Q ss_pred --------CChHHHHHHHcCCHHHHHHHH-hCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCC
Q 011578 85 --------GETPLHMAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155 (482)
Q Consensus 85 --------g~tpLh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g 155 (482)
|+||||+++..++.+++++++ ..+.+++.+|..|+||||+|+ ..|+.+++++|+++|+|++.+|.+|
T Consensus 179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~----~~g~~~iv~~Ll~~gadin~~d~~G 254 (277)
T d2fo1e1 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA----QEGRIEVVMYLIQQGASVEAVDATD 254 (277)
T ss_dssp GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred cccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHH----HcCCHHHHHHHHHCcCCCCCcCCCC
Confidence 445555555555555555433 456677778888999999999 7788999999999999999999999
Q ss_pred CChhhhhhcCCCChHHHHHHHh
Q 011578 156 KTPLDHLSNGPGSAKLRELLLW 177 (482)
Q Consensus 156 ~tpl~~~a~~~~~~~~~~lL~~ 177 (482)
+||||+|+. .++.+++++|.+
T Consensus 255 ~T~L~~A~~-~~~~~iv~lL~~ 275 (277)
T d2fo1e1 255 HTARQLAQA-NNHHNIVDIFDR 275 (277)
T ss_dssp CCHHHHHHH-TTCHHHHHHHHT
T ss_pred CCHHHHHHH-cCCHHHHHHHHH
Confidence 999955444 667888888874
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=1.2e-25 Score=190.77 Aligned_cols=150 Identities=29% Similarity=0.398 Sum_probs=133.9
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
.||||.||+.|+.++|+.||.++ .+++ .+.. |+||||+|+..++.++++.++.. .......+..+.++++.++
T Consensus 3 ~t~L~~Aa~~g~~~~v~~LL~~g-a~~~-~~~~-g~t~L~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 75 (153)
T d1awcb_ 3 GKKLLEAARAGQDDEVRILMANG-APFT-TDWL-GTSPLHLAAQYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAA 75 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT-CCCC-CCTT-CCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHcC-CCcc-cccC-CCccccccccccccccccccccc----ccccccccccccccccccc
Confidence 49999999999999999999775 4555 4544 99999999999999999999984 4555667778899999999
Q ss_pred HcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHH
Q 011578 94 KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRE 173 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~ 173 (482)
...+.+++++++.+|++++.+|.+|+||||+|+ ..|+.+++++|+++|+|++.+|.+|.||||+|+ ..++.++++
T Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~----~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~-~~g~~eiv~ 150 (153)
T d1awcb_ 76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWAT----EHNHQEVVELLIKYGADVHTQSKFCKTAFDISI-DNGNEDLAE 150 (153)
T ss_dssp HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHH
T ss_pred ccccceeeecccccCCccccccccCchHHHhhh----hcchhheeeeccccccCCcccCCCCCCHHHHHH-HcCCHHHHH
Confidence 999999999999999999999999999999999 889999999999999999999999999995555 567888888
Q ss_pred HH
Q 011578 174 LL 175 (482)
Q Consensus 174 lL 175 (482)
+|
T Consensus 151 lL 152 (153)
T d1awcb_ 151 IL 152 (153)
T ss_dssp HH
T ss_pred hC
Confidence 77
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-25 Score=202.31 Aligned_cols=156 Identities=26% Similarity=0.289 Sum_probs=133.2
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHh---hCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCC------------
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK------------ 75 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~------------ 75 (482)
++|.||||+||..|+.+.|+.|+. +.+.++|..+.. |+||||+|+..|+.+++++|+++++...
T Consensus 1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~-g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 79 (228)
T d1k1aa_ 1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL 79 (228)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCC-CCccceehhccccccccccccccccccccccccccccccc
Confidence 469999999999999999999875 578889999876 9999999999999999999999765410
Q ss_pred -------------------------------------------------------cccccCcCCCChHHHHHHHcCCHHH
Q 011578 76 -------------------------------------------------------VELEAQNMYGETPLHMAAKNGCNEA 100 (482)
Q Consensus 76 -------------------------------------------------------~~~~~~~~~g~tpLh~A~~~g~~~~ 100 (482)
......+..+.+|||.|+..+...+
T Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 159 (228)
T d1k1aa_ 80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 159 (228)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence 0011224468899999999999999
Q ss_pred HHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 101 AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 101 v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+++++++|.+++.+|.+|.||||+|+ ..|+.+++++|+++|+|++.+|.+|+||||+| ...++.+++
T Consensus 160 ~~~~~~~~~~~~~~d~~g~t~L~~A~----~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A-~~~~~~div 226 (228)
T d1k1aa_ 160 VQLLLQHGANVNAQMYSGSSALHSAS----GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA-RSRRVIDIL 226 (228)
T ss_dssp HHHHHHTTCCTTCBCTTSCBHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC-SSHHHHHHH
T ss_pred hhhhhhhccccccccccCcchHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HhCCCcccc
Confidence 99999999999999999999999999 78899999999999999999999999999655 444444443
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=3.9e-26 Score=184.54 Aligned_cols=106 Identities=28% Similarity=0.316 Sum_probs=88.8
Q ss_pred ChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhh
Q 011578 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128 (482)
Q Consensus 49 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~ 128 (482)
.|||+||+..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus 3 ~tpL~~A~~~g~~~~v~~Ll~----~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~-- 76 (118)
T d1myoa_ 3 DKEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV-- 76 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHT----TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHH--
T ss_pred ChHHHHHHHCCCHHHHHHHHH----hhhccccccccccccccccccccccccccccccccceeeecccccccchhhhh--
Confidence 378888888888888888888 56778888888888888888888888888888888888888888888888888
Q ss_pred ccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 129 SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 129 ~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..|+.+++++|+++|+|++.+|.+|+||||++
T Consensus 77 --~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a 108 (118)
T d1myoa_ 77 --YEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108 (118)
T ss_dssp --TTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred --hcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence 77888888888888888888888888888544
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.92 E-value=1.8e-25 Score=211.15 Aligned_cols=261 Identities=18% Similarity=0.244 Sum_probs=168.9
Q ss_pred HHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCC-CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 200 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVG-ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 200 ~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
++.+.|++ ++||+++++.+...+. .+.++........ ..++.++||+||||||||++|+++|+.++. +
T Consensus 7 ~i~~~L~~~ViGQd~A~~~l~~av~---~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~-------~ 76 (309)
T d1ofha_ 7 EIVSELDQHIIGQADAKRAVAIALR---NRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 76 (309)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHH---HHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------C
T ss_pred HHHHHhcCcccChHHHHHHHHHHHH---HHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc-------c
Confidence 45566665 7999999999987542 1112211111110 126789999999999999999999998875 8
Q ss_pred eEEeeccccc--ccccccchhhHHHHHHhcC--------CcEEEEecccccccCCCCCCChhH-HHHHHHHHhhhcCCc-
Q 011578 278 VTEVQRTDLV--GEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGGK- 345 (482)
Q Consensus 278 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~--------~~vl~iDE~d~l~~~~~~~~~~~~-~~~~~~ll~~l~~~~- 345 (482)
|+.++.+++. +.|.|+++..++.+|..+. +|||||||+|+++++++....+.. ..+++.||+.+|+..
T Consensus 77 ~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~ 156 (309)
T d1ofha_ 77 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV 156 (309)
T ss_dssp EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred hhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEE
Confidence 9999999986 5588999999999998874 499999999999998876555544 457899999998632
Q ss_pred -----------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccc----cccccccccCc
Q 011578 346 -----------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED----SLLYGFKLHSS 410 (482)
Q Consensus 346 -----------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~----~~~~~~~~~~~ 410 (482)
+.+|+++..+ .......+|++++||+.++.|++|+.+++.+|+..+....... ....+. ...
T Consensus 157 ~~~~~~i~~s~ilfi~~ga~~-~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~~~l~~~~~~~~~~~~~--~~~ 233 (309)
T d1ofha_ 157 STKHGMVKTDHILFIASGAFQ-VARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGV--NIA 233 (309)
T ss_dssp EETTEEEECTTCEEEEEECCS-SSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTC--EEE
T ss_pred ecCCeEEEccceeEEeccchh-hcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ccc
Confidence 3344432210 1111123899999999999999999999999986543222110 000112 223
Q ss_pred ccHHHHHHHHHHHhh-HhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 411 CSMDAIAALIEKETT-EKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 411 ~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
++..+.......... .......++|.++.++++..+........ .......|+.+.+.+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~GaR~L~~~ie~i~~~~~~~~~~---~~~~~v~i~~~~v~~~l~~ 297 (309)
T d1ofha_ 234 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD---MNGQTVNIDAAYVADALGE 297 (309)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG---CTTCEEEECHHHHHHHTCS
T ss_pred cchHHHHHHHHHHHHHhhcchhcCchHHHHHHHHHHHHHHccccc---cCCCEEEECHHHHHHhcCC
Confidence 455555444443331 12222345788888888765554333221 1122335666667666544
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=9.1e-26 Score=182.33 Aligned_cols=107 Identities=26% Similarity=0.303 Sum_probs=101.6
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
.|||++||+.|+.+.|+.|++ .+.++|..+.. |+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus 3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~~~~-g~t~lh~A~~~~~~~~~~~ll~----~g~din~~d~~g~tpLh~A~ 76 (118)
T d1myoa_ 3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEG-GRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSAV 76 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHT-TTCCCCCCSSS-SCCTTHHHHHHSTTTHHHHHHH----SSCTTTCCSSSCSCHHHHHH
T ss_pred ChHHHHHHHCCCHHHHHHHHH-hhhcccccccc-cccccccccccccccccccccc----ccceeeecccccccchhhhh
Confidence 489999999999999999995 46789998886 9999999999999999999999 68899999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCccccccCCCcceeeeh
Q 011578 94 KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
..|+.+++++|+++|+|++.+|.+|+||||+|.
T Consensus 77 ~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~ 109 (118)
T d1myoa_ 77 YEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109 (118)
T ss_dssp TTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred hcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence 999999999999999999999999999999987
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.3e-25 Score=197.15 Aligned_cols=167 Identities=25% Similarity=0.250 Sum_probs=138.0
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC--CCcccccCcCCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN--DKVELEAQNMYG 85 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~g 85 (482)
.++..|.||||+||..|+.+++++|+ +.+.+++..+.. |+||||+|+..|+.++++.|+..+.. .....+.....|
T Consensus 34 ~~d~~g~TpLh~A~~~~~~~iv~~L~-~~g~d~~~~d~~-g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 111 (221)
T d1iknd_ 34 FQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 111 (221)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred cCCCCCCccccccccccccccccccc-cccccccccccc-cccccccccccccccccchhhhhccccccccccccccccc
Confidence 45678899999999999999888877 456778888776 89999999999999999998875332 122334455668
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
.||||+|+..++.+++++|+..|+.++..+ .+|+||||+|+ ..|+.+++++|+++|+|++.+|.+|+||||+ |.
T Consensus 112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~----~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~-A~ 186 (221)
T d1iknd_ 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQNPDLVSLLLKCGADVNRVTYQGYSPYQL-TW 186 (221)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGG-CT
T ss_pred chhhhHHhhcCChhheeeecccCcccccccccCCCCcccccc----ccccHHHHHHHHhcCCcccccCCCCCCHHHH-HH
Confidence 899999999999999999999999988765 57999999999 8899999999999999999999999999955 55
Q ss_pred CCCChHHHHHHHhhhHH
Q 011578 165 GPGSAKLRELLLWHSEE 181 (482)
Q Consensus 165 ~~~~~~~~~lL~~~~~~ 181 (482)
..++.+++++|.+...+
T Consensus 187 ~~~~~~~~~~l~~~~~~ 203 (221)
T d1iknd_ 187 GRPSTRIQQQLGQLTLE 203 (221)
T ss_dssp TSSCHHHHHHHHTTSCG
T ss_pred HCCCHHHHHHHHHcCCc
Confidence 56788899888877543
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.6e-25 Score=206.16 Aligned_cols=167 Identities=28% Similarity=0.322 Sum_probs=130.5
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC------------------
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND------------------ 74 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~------------------ 74 (482)
+.|+||.|++.|+.++|+.||+ .|.++|..++..|+||||+|+..|+.+++++|++.+...
T Consensus 5 ~~~~L~~Ai~~~~~e~vk~Ll~-~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (285)
T d1wdya_ 5 DNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CcHHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence 5688999999999999998885 467788777666999999999999999999998764420
Q ss_pred --------------------------------------------Cccc----------ccCcCCCChHHHHHHHcCCHHH
Q 011578 75 --------------------------------------------KVEL----------EAQNMYGETPLHMAAKNGCNEA 100 (482)
Q Consensus 75 --------------------------------------------~~~~----------~~~~~~g~tpLh~A~~~g~~~~ 100 (482)
..++ ...+..|.||||+|+..|+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T d1wdya_ 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence 0000 1123457889999998887666
Q ss_pred HHHHH--------------------------------------hCCCCccccccCCCcceeeehhhccCCChHHHHHHHh
Q 011578 101 AKLLL--------------------------------------AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142 (482)
Q Consensus 101 v~~Ll--------------------------------------~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll 142 (482)
+++|+ ++|++++.+|.+|.||||+|+ ..|+.+++++|+
T Consensus 164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~----~~~~~~~v~~lL 239 (285)
T d1wdya_ 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH----HTTCHHHHHHHH
T ss_pred HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhh----hcCcHHHHHHHH
Confidence 66655 445566667778999999999 788999999999
Q ss_pred h-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 143 E-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 143 ~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+ .|++++.+|.+|.||||+|+ ..++.+++++|+++|++++.+
T Consensus 240 ~~~g~din~~d~~G~TpL~~A~-~~~~~eiv~~Ll~~GAd~n~~ 282 (285)
T d1wdya_ 240 EQEHIEINDTDSDGKTALLLAV-ELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp HSSSCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHSSCSCCS
T ss_pred HcCCCCCcCCCCCCCCHHHHHH-HcCCHHHHHHHHHCCCCCCcc
Confidence 7 49999999999999995544 567889999999999986543
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.2e-25 Score=180.37 Aligned_cols=121 Identities=20% Similarity=0.242 Sum_probs=95.3
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC-hHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE-TPLH 90 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~-tpLh 90 (482)
++.++||+||..|++++|+.||+ .+.++|..+.. |.||||+|+ .|+.+++++|++ .|++++.++..+. ||||
T Consensus 2 p~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~~~~-g~t~l~~a~-~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~L~ 74 (125)
T d1bi7b_ 2 PSADWLATAAARGRVEEVRALLE-AGANPNAPNSY-GRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTRPVH 74 (125)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHH
T ss_pred CChhHHHHHHHCCCHHHHHHHHH-cCCcccccccc-ccccccccc-cccccccccccc----cccccccccccccccccc
Confidence 45677888888888888888874 45677777775 888888664 678888888888 4677777777665 5888
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhh
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~ 143 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|++
T Consensus 75 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~----~~g~~~~v~~Lls 123 (125)
T d1bi7b_ 75 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE----ELGHRDVARYLRA 123 (125)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH----HHTCHHHHHHHSS
T ss_pred cccccccccccccccccccccccccCCCCCHHHHHH----HcCCHHHHHHHHh
Confidence 888888888888888888888888888888888888 6778888888864
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.6e-25 Score=179.47 Aligned_cols=122 Identities=24% Similarity=0.253 Sum_probs=90.7
Q ss_pred hHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc
Q 011578 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (482)
Q Consensus 50 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~ 129 (482)
++||+||..|+.++|++|++ .|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~----~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~--- 75 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA--- 75 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH---
T ss_pred HHHHHHHHcCCHHHHHHHHH----cCCCccccccccccccccccccccccccccccccccccccccccCcccccccc---
Confidence 56777888888888888887 46777777778888888888888888888888888888888888888888887
Q ss_pred cCCChHHHHHHHhhCCCCccccCC-CCCChhhhh-hcCCCChHHHHHHHhhh
Q 011578 130 IRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHL-SNGPGSAKLRELLLWHS 179 (482)
Q Consensus 130 ~~~~~~~~v~~Ll~~gad~~~~d~-~g~tpl~~~-a~~~~~~~~~~lL~~~~ 179 (482)
..|+.+++++|+++|++++.++. .|+||++.+ +...++.+++++|...+
T Consensus 76 -~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~ 126 (130)
T d1ycsb1 76 -SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 126 (130)
T ss_dssp -HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence 66778888888888888776664 467776433 34456667777776543
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.90 E-value=1.2e-23 Score=187.73 Aligned_cols=166 Identities=26% Similarity=0.329 Sum_probs=140.1
Q ss_pred cccccc--CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC-------
Q 011578 3 KNQDRR--SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------- 73 (482)
Q Consensus 3 ~~~~~~--~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~------- 73 (482)
.|.|.. .+..|.||||+||..|+.++++.||. .+..+|..+.. +.++++.++..++.............
T Consensus 11 ~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~-~g~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (209)
T d1ot8a_ 11 QGAELNATMDKTGETSLHLAARFARADAAKRLLD-AGADANSQDNT-GRTPLHAAVAADAMGVFQILLRNRATNLNARMH 88 (209)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT
T ss_pred CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHh-hcccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 344443 35789999999999999999999885 56667888776 88999999888876655544432111
Q ss_pred -----------------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhcc
Q 011578 74 -----------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (482)
Q Consensus 74 -----------------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~ 130 (482)
.+++++.++..|+||||+++..+...+++.|++++++++..|.+|.||||+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~---- 164 (209)
T d1ot8a_ 89 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA---- 164 (209)
T ss_dssp TCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----
T ss_pred cccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhc----
Confidence 46778889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHH
Q 011578 131 RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (482)
Q Consensus 131 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL 175 (482)
..|+.+++++|+++|+|++.+|..|+||||+|+. .++.+++++|
T Consensus 165 ~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~-~~~~~iv~lL 208 (209)
T d1ot8a_ 165 REGSYEASKALLDNFANREITDHMDRLPRDVASE-RLHHDIVRLL 208 (209)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-cCCHHHHhhc
Confidence 8899999999999999999999999999955555 5778888876
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=4.2e-23 Score=188.38 Aligned_cols=208 Identities=17% Similarity=0.222 Sum_probs=152.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.|++++|++.+++.+..++.... .+ ...++++||+||||||||++|+++|++++. ++..++
T Consensus 6 ~~~~divGqe~~~~~l~~~i~~~~---~~--------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~-------~~~~~~ 67 (238)
T d1in4a2 6 KSLDEFIGQENVKKKLSLALEAAK---MR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTS 67 (238)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHH---HH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEE
T ss_pred CcHHHcCChHHHHHHHHHHHHHHH---hc--------CCCCCeEEEECCCCCcHHHHHHHHHhccCC-------Cccccc
Confidence 368899999999999999865432 11 235678999999999999999999999986 677777
Q ss_pred cccccccccccchhhHHHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------------------
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------ 343 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------------------ 343 (482)
+++... ...+..++... +++++||||+|.+.+..+ +.++..++.
T Consensus 68 ~~~~~~------~~~~~~~~~~~~~~~~~~ide~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (238)
T d1in4a2 68 GPVLVK------QGDMAAILTSLERGDVLFIDEIHRLNKAVE-----------ELLYSAIEDFQIDIMIGKGPSAKSIRI 130 (238)
T ss_dssp TTTCCS------HHHHHHHHHHCCTTCEEEEETGGGCCHHHH-----------HHHHHHHHTSCCCC-------------
T ss_pred Cccccc------HHHHHHHHHhhccCCchHHHHHHHhhhHHH-----------hhcccceeeeeeeeeecCccccccccc
Confidence 665432 23445555444 569999999999976444 334444332
Q ss_pred --CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 344 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 344 --~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
..+++|++++..... ++++++||...+.|+.|+.+++..+++....... ..++++++..++.
T Consensus 131 ~~~~~~~I~at~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~l~~i~~ 194 (238)
T d1in4a2 131 DIQPFTLVGATTRSGLL-----SSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----------VEIEDAAAEMIAK 194 (238)
T ss_dssp --CCCEEEEEESCGGGS-----CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccc-----cccceeeeeEEEEecCCCHHHHHHHHHHhhhhcc-----------chhhHHHHHHHHH
Confidence 245677776655543 7888999999999999999999999998877653 3567788888876
Q ss_pred HHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
.. .|+.|.+.++++.+...+..+ ....||.+++.++++.+
T Consensus 195 ~s-------~gd~R~ai~~l~~~~~~~~~~---------~~~~it~~~~~~al~~l 234 (238)
T d1in4a2 195 RS-------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL 234 (238)
T ss_dssp TS-------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred hC-------CCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHhh
Confidence 54 577888888888776544222 22358899999998764
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.7e-25 Score=179.59 Aligned_cols=120 Identities=27% Similarity=0.346 Sum_probs=109.7
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-cceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM-TPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A~ 126 (482)
+.++||+||..|+.++|++|++ .|++++.+|..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+
T Consensus 3 ~~~~L~~Aa~~G~~~~v~~Ll~----~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~ 77 (125)
T d1bi7b_ 3 SADWLATAAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 77 (125)
T ss_dssp STTHHHHHHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred ChhHHHHHHHCCCHHHHHHHHH----cCCccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 6799999999999999999999 57889999999999999775 7999999999999999999998876 6999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHh
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (482)
..|+.+++++|+++|++++.+|..|+||||+| ...++.+++++|+.
T Consensus 78 ----~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A-~~~g~~~~v~~Lls 123 (125)
T d1bi7b_ 78 ----REGFLDTLVVLHRAGARLDVRDAWGRLPVDLA-EELGHRDVARYLRA 123 (125)
T ss_dssp ----HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHH-HHHTCHHHHHHHSS
T ss_pred ----ccccccccccccccccccccccCCCCCHHHHH-HHcCCHHHHHHHHh
Confidence 88899999999999999999999999999555 55678889998874
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1e-23 Score=173.26 Aligned_cols=120 Identities=24% Similarity=0.207 Sum_probs=108.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
++||.||..|+.++|+.|++ .+.++|.++.. |+||||+||..|+.+++++|++ .+++++.+|.+|+||||+|+.
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~d~~-g~t~Lh~A~~~~~~~~~~~ll~----~g~~~~~~d~~g~tpLh~A~~ 76 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQ----FGVNVNAADSDGWTPLHCAAS 76 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTT-SCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-cCCCccccccc-cccccccccccccccccccccc----cccccccccccCcccccccch
Confidence 68999999999999999885 56789999886 9999999999999999999999 578899999999999999999
Q ss_pred cCCHHHHHHHHhCCCCcccccc-CCCcceee--ehhhccCCChHHHHHHHhhC
Q 011578 95 NGCNEAAKLLLAHGAFIEAKAN-NGMTPLHL--SVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 95 ~g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~--A~~~~~~~~~~~~v~~Ll~~ 144 (482)
.|+.+++++|+++|++++..+. .|+||+++ |+ ..|+.+++++|+..
T Consensus 77 ~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~----~~g~~eiv~~L~~~ 125 (130)
T d1ycsb1 77 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM----EEGYTQCSQFLYGV 125 (130)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSS----STTCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHH----HcChHHHHHHHHhH
Confidence 9999999999999999998765 58887654 45 77899999999864
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.9e-25 Score=196.97 Aligned_cols=166 Identities=27% Similarity=0.346 Sum_probs=141.1
Q ss_pred CCchHhHHHHHcCCHHHHHHHHh---hCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
+|.||||+|+..|+.+.+..++. ..+.++|..+.. |+||||+||..|+.+++++|++ .|++++.+|..|.||
T Consensus 1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~-g~TpLh~A~~~~~~~iv~~L~~----~g~d~~~~d~~g~t~ 75 (221)
T d1iknd_ 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLG----AGCDPELRDFRGNTP 75 (221)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT-CCCHHHHHHHTTCHHHHHCCCS----CCCCSCCCCTTCCCH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCC-CCcccccccccccccccccccc----ccccccccccccccc
Confidence 58999999999999766655432 467789998886 9999999999999999999999 678899999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCcc------ccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC-CCCCChhhh
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIE------AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDH 161 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~------~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl~~ 161 (482)
||+|+..|+.+++++|++.+.+.. .....|.||||.|+ ..++.+++.+|++.|++++.++ .+|.||||+
T Consensus 76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~----~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~ 151 (221)
T d1iknd_ 76 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS----IHGYLGIVELLVSLGADVNAQEPCNGRTALHL 151 (221)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred cccccccccccccchhhhhcccccccccccccccccchhhhHHh----hcCChhheeeecccCcccccccccCCCCcccc
Confidence 999999999999999999875533 34557899999999 7889999999999999998776 579999955
Q ss_pred hhcCCCChHHHHHHHhhhHHHHHHhh
Q 011578 162 LSNGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
|+ ..++.+++++|+++|++++.+..
T Consensus 152 A~-~~g~~~~v~~Ll~~gad~~~~~~ 176 (221)
T d1iknd_ 152 AV-DLQNPDLVSLLLKCGADVNRVTY 176 (221)
T ss_dssp HH-HTTCHHHHHHHHTTTCCSCCCCT
T ss_pred cc-ccccHHHHHHHHhcCCcccccCC
Confidence 54 57788999999999988765543
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=5.8e-24 Score=201.25 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=115.5
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcH-------HHHHHHHcCCCCCCcccccCc
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA-------EIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~-------~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
+..|.||||+||..|+.++|+.||+ .+.+++..+.. |+||||+||..++. ++++++. ..++.+|
T Consensus 104 D~~G~T~LH~Aa~~g~~~~v~~Ll~-~gad~~~~d~~-G~TpL~~A~~~~~~~~~~~~~~ll~~l~-------~~~~~~d 174 (301)
T d1sw6a_ 104 DEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDYLY-------PCLILED 174 (301)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHHHHG-------GGGGEEC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcCCcc-cccHHHHhhhcccchhhhhHHHHHHHHh-------hhhhhcc
Confidence 5789999999999999999999985 57889999887 99999999987762 4455443 3466788
Q ss_pred CCCChHHHHHHHcCC----HH--------HHHHHHhCCC-------------------------------------Cccc
Q 011578 83 MYGETPLHMAAKNGC----NE--------AAKLLLAHGA-------------------------------------FIEA 113 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~----~~--------~v~~Ll~~ga-------------------------------------~~~~ 113 (482)
..|+||||+++..+. .. ++.++++.+. .+|.
T Consensus 175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~ 254 (301)
T d1sw6a_ 175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 254 (301)
T ss_dssp TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence 899999999886543 22 2334444332 2688
Q ss_pred cccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 114 KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 114 ~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
+|.+|+||||+|+ ..|+.++|++|+++|||++.+|..|+||||+|+
T Consensus 255 ~D~~G~TpLh~A~----~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~ 300 (301)
T d1sw6a_ 255 QDSNGDTCLNIAA----RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300 (301)
T ss_dssp CCTTSCCHHHHHH----HHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred CCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence 9999999999999 889999999999999999999999999997764
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.6e-23 Score=203.93 Aligned_cols=158 Identities=28% Similarity=0.348 Sum_probs=142.2
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..+.||||.|+..++.+.++.++. .+...+..+.. |.||||+|+..++.+++++|++ .|++++..+..+.|
T Consensus 226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~~l~~a~~~~~~~i~~~Ll~----~g~~~~~~~~~~~t 299 (408)
T d1n11a_ 226 AESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYT 299 (408)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCC
T ss_pred ccCCCCCCHHHHHHHhCcHhHhhhhhc-cccccccccCC-CCChhhhhhhcCcHHHHHHHHH----CCCccccccccccc
Confidence 345668899999999999999998874 46667777765 9999999999999999999999 67889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||.++..++.++++++++.|+++|.+|.+|+||||+|+ ..|+.++|++|+++|||+|.+|.+|+||||+| ...+
T Consensus 300 ~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~----~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A-~~~~ 374 (408)
T d1n11a_ 300 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA----QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA-KRLG 374 (408)
T ss_dssp HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH-HHTT
T ss_pred cchhhcccCcceeeeeeccccccccccCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHcC
Confidence 999999999999999999999999999999999999999 88999999999999999999999999999555 5567
Q ss_pred ChHHHHHHH
Q 011578 168 SAKLRELLL 176 (482)
Q Consensus 168 ~~~~~~lL~ 176 (482)
+.+++++|.
T Consensus 375 ~~~iv~~L~ 383 (408)
T d1n11a_ 375 YISVTDVLK 383 (408)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 788888774
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.3e-22 Score=171.00 Aligned_cols=124 Identities=23% Similarity=0.291 Sum_probs=107.3
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCC-----CCCCCChHHHHHHh---CCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNER-----NPVMAQTPLHVSAG---YNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
..|+.|++.+++..+..++.++ .+++.. ....|+||||+|+. .|+.++|++|++ .|++++.+|..|+
T Consensus 8 ~~L~~Av~~~dl~~l~~~~~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadin~~d~~g~ 82 (154)
T d1dcqa1 8 HSLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGS 82 (154)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHcC-CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH----cCCChhhhhhhhc
Confidence 3466888999999999988654 333322 12349999999996 478999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
||||+||..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|++.++.
T Consensus 83 TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~----~~~~~~i~~~L~~~~~~ 139 (154)
T d1dcqa1 83 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK----RLKHEHCEELLTQALSG 139 (154)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccCccccccCCCCCCHHHHHH----HcCCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999 88999999999987654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.9e-21 Score=177.36 Aligned_cols=208 Identities=20% Similarity=0.254 Sum_probs=146.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.|++++|+++++++++.++.... .....++++||+||||||||++|+++|++++. ++..++
T Consensus 6 ~~~ddivGq~~~~~~L~~~i~~~~-----------~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~-------~~~~~~ 67 (239)
T d1ixsb2 6 KTLDEYIGQERLKQKLRVYLEAAK-----------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTS 67 (239)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHHT-----------TSSSCCCCEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHH-----------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CeEecc
Confidence 368899999999999998865442 11235679999999999999999999999986 777777
Q ss_pred cccccccccccchhhHHHHHHhc--CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----------------
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------- 343 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a--~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----------------- 343 (482)
.+.... .+ .....+... .++|+||||+|.+.+..+ ..++..|+.
T Consensus 68 ~~~~~~--~~----~~~~~~~~~~~~~~i~~iDe~~~~~~~~~-----------~~l~~~~e~~~~~~~~~~~~~~~~~~ 130 (239)
T d1ixsb2 68 GPAIEK--PG----DLAAILANSLEEGDILFIDEIHRLSRQAE-----------EHLYPAMEDFVMDIVIGQGPAARTIR 130 (239)
T ss_dssp TTTCCS--HH----HHHHHHHTTCCTTCEEEEETGGGCCHHHH-----------HHHHHHHHHSEEEEECSCTTCCCEEE
T ss_pred CCcccc--ch----hhHHHHHhhccCCCeeeeecccccchhHH-----------Hhhhhhhhhhhhhhhhccchhhhhcc
Confidence 665432 11 122222222 358999999999987444 333333321
Q ss_pred ---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHH
Q 011578 344 ---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 420 (482)
Q Consensus 344 ---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (482)
.++++++++++.... .++.++|+...+.|..|+.+++.+++...+..+. ..++.+.+..++
T Consensus 131 ~~~~~~~~i~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------i~~~~~~l~~ia 194 (239)
T d1ixsb2 131 LELPRFTLIGATTRPGLI-----TAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIG 194 (239)
T ss_dssp EECCCCEEEEEESCCSSC-----SCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGC-----------CCBCHHHHHHHH
T ss_pred cCCCCEEEEeeccCcccc-----cchhhcccceeeEeeccChhhhhHHHHHHHHHhC-----------CccchHHHHHHH
Confidence 334556554443332 5566777789999999999999999998887653 355778888888
Q ss_pred HHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 421 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
... .|+.|...++++.+...+. ......||.+++.+++..+
T Consensus 195 ~~s-------~gd~R~a~~~l~~~~~~a~---------~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 195 RRS-------RGTMRVAKRLFRRVRDFAQ---------VAGEEVITRERALEALAAL 235 (239)
T ss_dssp HHT-------TSSHHHHHHHHHHHHHHHT---------TSCCSCBCHHHHHHHHHHH
T ss_pred HHc-------CCCHHHHHHHHHHHHHHHH---------HhCCCCcCHHHHHHHHhhh
Confidence 765 4677888888887765431 1123568999999998754
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.87 E-value=8e-22 Score=179.27 Aligned_cols=138 Identities=14% Similarity=0.200 Sum_probs=101.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccc-hhhHHHHHHhcC---CcEEEEeccc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT-GPKTRRRIKEAE---GGILFVDEAY 316 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~---~~vl~iDE~d 316 (482)
.++.++||+||||||||++|++||++++. +|+.+++++....+.+.+ ...++++|+.|. ++||||||+|
T Consensus 38 ~p~~~vLL~GppGtGKT~la~alA~~~~~-------~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid 110 (246)
T d1d2na_ 38 TPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIE 110 (246)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHhhcccc-------cccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhh
Confidence 45678999999999999999999999877 899999887766666654 356888998774 4899999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHHHHHHHH
Q 011578 317 RLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH 390 (482)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~ 390 (482)
.+.+.+..++ .....++++|+..+++ ..++||+||+.... + . .+.+++||+..|+||.++ .+++.++++
T Consensus 111 ~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~--l-d-~~~~~~rF~~~i~~P~~~~r~~il~~l~ 185 (246)
T d1d2na_ 111 RLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV--L-Q-EMEMLNAFSTTIHVPNIATGEQLLEALE 185 (246)
T ss_dssp HHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH--H-H-HTTCTTTSSEEEECCCEEEHHHHHHHHH
T ss_pred hHhhhccccc-chhHHHHHHHHHHhcCCCccccceeeeeccCChhh--c-c-chhhcCccceEEecCCchhHHHHHHHHH
Confidence 9988765432 3345777888888876 24667777654322 2 1 245788999999997664 344444443
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.87 E-value=1.3e-24 Score=202.32 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=114.1
Q ss_pred CCCCCCce-eEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC-CcEEEEeccc
Q 011578 239 GARRPPHM-AFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAY 316 (482)
Q Consensus 239 ~~~~~~~~-ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~vl~iDE~d 316 (482)
+...+.++ ||+||||||||++|++||.+++. ..+|+.++++++.++|+|+++++++++|+.++ ++||||||||
T Consensus 118 ~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~-----~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid 192 (321)
T d1w44a_ 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK 192 (321)
T ss_dssp TEEEESEEEEEECSSSSCHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred hcccCCceEEEECCCCccHHHHHHHHHHHhcC-----CCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhh
Confidence 33455665 45899999999999999999974 12789999999999999999999999999875 5999999999
Q ss_pred ccccCCCCCC-ChhHHHHHHHHHhhhcC----CcEEEEEecCchhHHHHHhcCccc--cCCCcceeeCCCCCHHHHHHHH
Q 011578 317 RLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGF--CRRVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 317 ~l~~~~~~~~-~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~~~~~~~~~~~l--~~R~~~~i~~~~~~~~~~~~il 389 (482)
.+.++|+.+. +....+++++||..||+ ..++||+||++...+..+ ++++ .+||+..+.++.||.+++.+|+
T Consensus 193 ~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i--~~~~~r~~Rf~~~v~v~~pd~~~r~~il 270 (321)
T d1w44a_ 193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKI--VELVKEASRSNSTSLVISTDVDGEWQVL 270 (321)
T ss_dssp TTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHH--HHHHHHHHHHSCSEEEEECSSTTEEEEE
T ss_pred hhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccch--hhhhhccCcccceeecCCCChHHHHHHH
Confidence 9999887543 33445899999999985 458888888764332222 2223 3499999999999999999999
Q ss_pred HHHHhcc
Q 011578 390 HIKMNNQ 396 (482)
Q Consensus 390 ~~~l~~~ 396 (482)
+.+....
T Consensus 271 ~~~~~~~ 277 (321)
T d1w44a_ 271 TRTGEGL 277 (321)
T ss_dssp EECBTTC
T ss_pred HHhccCc
Confidence 7665443
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.87 E-value=7e-24 Score=197.75 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=132.3
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCC----CCCcccccCcCCCChHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG----NDKVELEAQNMYGETPL 89 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~~~~g~tpL 89 (482)
.||||.++..+....+.++|.+.+ +|..+...|+||||+||..|+.++|++|+.+.. ..|+++|.+|.+|+|||
T Consensus 1 ~~p~~~~~~~~~~~~~~~~l~~~~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL 78 (277)
T d2fo1e1 1 ESPIKLHTEAAGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 78 (277)
T ss_dssp CCCCHHHHHHHSSSCCCSCCSTTT--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred CChHHHHHHhCCCHHHHHHHHhcC--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence 489997776555555555665544 444554459999999999999999888753210 15789999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc----------------------------------------
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS---------------------------------------- 129 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~---------------------------------------- 129 (482)
|+|+..|+.+++++|+++|++++.+|.+|.||||+|+..+
T Consensus 79 h~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (277)
T d2fo1e1 79 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 158 (277)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccc
Confidence 9999999999999999999999999998888888887543
Q ss_pred ------------------------------------cCCChHHHHHHHh-hCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 130 ------------------------------------IRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 130 ------------------------------------~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
...++.+++.+++ ..+.+++.+|..|+||||+|+ ..++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~-~~g~~~iv 237 (277)
T d2fo1e1 159 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA-QEGRIEVV 237 (277)
T ss_dssp HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH-HHTCHHHH
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHH-HcCCHHHH
Confidence 1345566776644 678899999999999996555 45678899
Q ss_pred HHHHhhhHHHHHH
Q 011578 173 ELLLWHSEEQRKR 185 (482)
Q Consensus 173 ~lL~~~~~~~~~~ 185 (482)
++|+++|++++.+
T Consensus 238 ~~Ll~~gadin~~ 250 (277)
T d2fo1e1 238 MYLIQQGASVEAV 250 (277)
T ss_dssp HHHHHTTCCSSCC
T ss_pred HHHHHCcCCCCCc
Confidence 9999999876544
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.1e-22 Score=198.31 Aligned_cols=159 Identities=30% Similarity=0.390 Sum_probs=139.9
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
-||||.||..|+.++|+.||.. |.++|..+.. |+||||+||..|+.++|++|++ .|++++.+|..|+||||+|+
T Consensus 1 ~TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~d~~-g~TpL~~A~~~g~~~iv~~Ll~----~gadi~~~~~~g~t~L~~A~ 74 (408)
T d1n11a_ 1 LTPLHVASFMGHLPIVKNLLQR-GASPNVSNVK-VETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA 74 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSC-CCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred CChHHHHHHCcCHHHHHHHHHC-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHHH
Confidence 3899999999999999999965 6789999876 9999999999999999999999 57889999999999999999
Q ss_pred HcCCHHHHHHHHhCCCC---------------------------------ccccccCCCcceeeehhhccCCChHHHHHH
Q 011578 94 KNGCNEAAKLLLAHGAF---------------------------------IEAKANNGMTPLHLSVWYSIRSEDYATVKT 140 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~ 140 (482)
..|+.+++++|+..+.+ .+..+..+.++|+.|+ ..++.+++++
T Consensus 75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~----~~~~~~~v~~ 150 (408)
T d1n11a_ 75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA----KYGKVRVAEL 150 (408)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HTTCHHHHHH
T ss_pred HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHH----HcCCHHHHHH
Confidence 99999999999875443 3445678899999999 7889999999
Q ss_pred HhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHH
Q 011578 141 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 141 Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (482)
|+++|++++..+.+|.+|||+| ...++.+++++|+.+|++++
T Consensus 151 ll~~~~~~~~~~~~~~~~L~~A-~~~~~~~~~~~Ll~~g~~~~ 192 (408)
T d1n11a_ 151 LLERDAHPNAAGKNGLTPLHVA-VHHNNLDIVKLLLPRGGSPH 192 (408)
T ss_dssp HHHTTCCTTCCCSSCCCHHHHH-HHTTCHHHHHHHGGGTCCSC
T ss_pred HHHcCCCCCcCCCcCchHHHHH-HHcCCHHHHHHHHhcCCccc
Confidence 9999999999999999999554 45677888899998887654
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=8.3e-22 Score=167.32 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=113.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+|+ .|+.+.+++||.. +.+++..+.. |.+||++|+..++.++++++++ .+++++.+|..|+|
T Consensus 31 ~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~----~~~~~n~~~~~~~t 103 (156)
T d1bd8a_ 31 ALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTS-GTSPVHDAARTGFLDTLKVLVE----HGADVNVPDGTGAL 103 (156)
T ss_dssp CCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCC
T ss_pred ccCCCCCccccccc-ccccccccccccc-cccccccccc-cccccccccccccccccccccc----cccccccccCCCCe
Confidence 45678999999887 4889999999955 5668888776 9999999999999999999999 57789999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ 144 (482)
|||+||..|+.+++++|+ .|++++.+|.+|+||||+|+ ..|+.+++++|+++
T Consensus 104 ~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~----~~g~~~iv~~Ll~h 155 (156)
T d1bd8a_ 104 PIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELAL----QRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHH----HSCCHHHHHHHHTT
T ss_pred eecccccccccccccccc-ccccccccCCCCCCHHHHHH----HcCCHHHHHHHHhh
Confidence 999999999999999887 68999999999999999999 88999999999976
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-21 Score=182.43 Aligned_cols=136 Identities=20% Similarity=0.215 Sum_probs=122.5
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhC----CcHHHHHHHHcCCCCCCcccccCcCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY----NKAEIVKSLLEWPGNDKVELEAQNMY 84 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (482)
....|.||||+||..|+.+.++.||.+.+.+++..+.. |.++++.+... +...++++|++ .|++++.+|..
T Consensus 144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~Li~----~ga~~n~~~~~ 218 (285)
T d1wdya_ 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM-GRNALIHALLSSDDSDVEAITHLLLD----HGADVNVRGER 218 (285)
T ss_dssp TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTT-SCCHHHHHHHCSCTTTHHHHHHHHHH----TTCCSSCCCTT
T ss_pred hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCC-CCcccccccccccchHHHHHHHHHHH----CCCCCCccCCC
Confidence 44568999999999999999999999888899998886 88877765443 35689999999 67889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC
Q 011578 85 GETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~ 153 (482)
|.||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+ ..|+.+++++|+++|||+|++|.
T Consensus 219 g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~----~~~~~eiv~~Ll~~GAd~n~~d~ 284 (285)
T d1wdya_ 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV----ELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCcccC
Confidence 9999999999999999999997 58999999999999999999 88999999999999999999884
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=2e-21 Score=163.77 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=105.0
Q ss_pred hHHHHHHhCCcHHHHHHHHcCCCCCCc--ccccCcCCCChHHHHHHHc---CCHHHHHHHHhCCCCccccccCCCcceee
Q 011578 50 TPLHVSAGYNKAEIVKSLLEWPGNDKV--ELEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTPLHL 124 (482)
Q Consensus 50 tpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~ 124 (482)
..|+.|+..+++..+..++..|.+... .....+..|+||||+|+.. |+.+++++|+++|+++|.+|.+|+||||+
T Consensus 8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~ 87 (154)
T d1dcqa1 8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 87 (154)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence 345677889999999888884432211 1222367899999999974 67899999999999999999999999999
Q ss_pred ehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhH
Q 011578 125 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 125 A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
|+ ..|+.+++++|+++|+|++.+|..|+||||+|+ ..++.+++++|++.++
T Consensus 88 A~----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~-~~~~~~i~~~L~~~~~ 138 (154)
T d1dcqa1 88 CC----LTDNAECLKLLLRGKASIEIANESGETPLDIAK-RLKHEHCEELLTQALS 138 (154)
T ss_dssp HH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHHT
T ss_pred cc----ccccccccccccccCccccccCCCCCCHHHHHH-HcCCHHHHHHHHHhCC
Confidence 99 889999999999999999999999999996554 5678899999987654
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=3.9e-21 Score=162.37 Aligned_cols=130 Identities=26% Similarity=0.352 Sum_probs=115.8
Q ss_pred CccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
+.|.+...+..|.||||+|+..++.+.+..++..... .+..... +.+++|+++...+.+++++++. .+++++.+
T Consensus 23 ~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~ 96 (153)
T d1awcb_ 23 ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKV-DRTPLHMAASEGHANIVEVLLK----HGADVNAK 96 (153)
T ss_dssp HHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTT-CCCHHHHHHHHTCHHHHHHHHT----TTCCTTCC
T ss_pred HcCCCcccccCCCcccccccccccccccccccccccc-ccccccc-cccccccccccccceeeecccc----cCCccccc
Confidence 3566677788999999999999999999988855444 3444443 8899999999999999999998 57788999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHH
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~L 141 (482)
|..|+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|
T Consensus 97 ~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~----~~g~~eiv~lL 152 (153)
T d1awcb_ 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI----DNGNEDLAEIL 152 (153)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHH
T ss_pred cccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHH----HcCCHHHHHhC
Confidence 999999999999999999999999999999999999999999999 88999999976
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.84 E-value=1.2e-22 Score=195.62 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=94.9
Q ss_pred CCCCchHhHHHHHcCCHHHHHHH--HhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc--CCC
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRL--LRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--MYG 85 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~l--l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--~~g 85 (482)
...|.||||+||.+|+.+.++.+ |...+.++|..+.. |+||||+||.+||.++|++|++ .|++++..+ ..|
T Consensus 87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~-g~taL~~Aa~~G~~~~v~~Ll~----~g~~~~~~~~~~~g 161 (346)
T d2ajaa1 87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAEN 161 (346)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH-HHHHHHHHHHTTCHHHHHHHHH----SCTTTHHHHHSHHH
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCC-CCCHHHHHHHCCCHHHHHHHHH----cCCCccccccccCC
Confidence 44677888888888887776653 44667777877765 8888888888888888888888 455666554 357
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCc---cccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccc
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFI---EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 150 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~ 150 (482)
+||||+||..|+.++|++|++.|++. +..+.+|.||+|.|+ ..|+.+++++|+++|++++.
T Consensus 162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~----~~g~~~iv~~Ll~~ga~~~~ 225 (346)
T d2ajaa1 162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV----GRGHHNVINFLLDCPVMLAY 225 (346)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS----TTCCHHHHHHHTTSHHHHHH
T ss_pred CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHh----hcCHHHHHHHHHhCCCCcch
Confidence 78888888888888888888887654 334455677777777 77788888888888877654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=8.8e-20 Score=165.63 Aligned_cols=242 Identities=17% Similarity=0.229 Sum_probs=172.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEEe
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEV 281 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~~ 281 (482)
++.++|.+.-.+++.+.+ ......+++|.||||+|||++++.+|..+... .......++.+
T Consensus 17 ld~~igRd~Ei~~l~~iL----------------~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l 80 (268)
T d1r6bx2 17 IDPLIGREKELERAIQVL----------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 80 (268)
T ss_dssp SCCCCSCHHHHHHHHHHH----------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCcccChHHHHHHHHHHH----------------hcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEe
Confidence 456789988777777652 12355789999999999999999999988752 22344578899
Q ss_pred ecccccc--cccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchh
Q 011578 282 QRTDLVG--EFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 356 (482)
Q Consensus 282 ~~~~~~~--~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~ 356 (482)
+.+.++. +|.|+-+..+..+++.. ...||||||++.+....++++ ....+-+.|...+..|.+.+|++||++.
T Consensus 81 ~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g--~~~d~a~~Lkp~L~rg~i~vIgatT~ee 158 (268)
T d1r6bx2 81 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLLSSGKIRVIGSTTYQE 158 (268)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS--CHHHHHHHHSSCSSSCCCEEEEEECHHH
T ss_pred eechHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCC--ccccHHHHhhHHHhCCCCeEEEeCCHHH
Confidence 9988875 58999999999988764 348999999999987544322 2446668888899999999999999999
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
+...++.+|+|.+|| .+|.++.|+.++-.+|++........ .....++++++.........--..+..-+..
T Consensus 159 y~~~~e~d~al~rrF-~~I~V~Eps~e~t~~IL~~~~~~~e~-------~h~v~~~~~al~~~v~ls~ryi~~~~~PdKA 230 (268)
T d1r6bx2 159 FSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAVKYINDRHLPDKA 230 (268)
T ss_dssp HHCCCCCTTSSGGGE-EEEECCCCCHHHHHHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred HHHHHhhcHHHHhhh-cccccCCCCHHHHHHHHHHhhHHHhc-------cCCEEeChHHHHHHHHHHHhhccCCCCCcHH
Confidence 999889999999999 99999999999999999876655432 2234566777766655433111111112223
Q ss_pred hHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 437 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 437 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+ .+++.|+.... +... ......++.+|+...+.++.
T Consensus 231 I-dllDea~a~~~--~~~~---~~~~~~i~~~di~~~i~~~~ 266 (268)
T d1r6bx2 231 I-DVIDEAGARAR--LMPV---SKRKKTVNVADIESVVARIA 266 (268)
T ss_dssp H-HHHHHHHHHHH--HSSS---CCCCCSCCHHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHH--hhcc---ccCcccCCHHHHHHHHHHHh
Confidence 3 46777765542 2211 11234688999988887764
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=2.6e-20 Score=168.26 Aligned_cols=128 Identities=23% Similarity=0.247 Sum_probs=114.1
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....+.++++.++..++.++++.++. .+...+..+.. |+||||+|+..|+.+++++|+++ ...+++.+|..|+|
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~---~~~~in~~d~~g~T 174 (229)
T d1ixva_ 100 KITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKF-NQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWT 174 (229)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTT-SCCHHHHHHHHTCHHHHHHHHTT---TCCCSCCCCTTSCC
T ss_pred ccccccccccccccccchhhhhhhhhh-hcccccccCCC-CCCccchhhhccccccccccccc---ccccccccccccCC
Confidence 345668899999999999999998885 46667777775 99999999999999999999996 34678999999999
Q ss_pred HHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
|||+|+..|+.++|++|++ .|+|++.+|.+|+||||+|+ +.+++++|+++|+|
T Consensus 175 pLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~-------~~~~~~~Ll~~g~d 228 (229)
T d1ixva_ 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL-------NEQVKKFFLNNVVD 228 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS-------CHHHHHHHHHHCCC
T ss_pred chhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh-------hHHHHHHHHHcCCC
Confidence 9999999999999999997 59999999999999999998 35799999999997
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.4e-20 Score=157.94 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=119.2
Q ss_pred CCccccc-cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccc
Q 011578 1 MQKNQDR-RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (482)
Q Consensus 1 ~~~~~~~-~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (482)
+++|.+. ..+..|.||||.|+ .|+.++++.||. .+.+++..+.. |.+||++++..++..++++|+. .+.+++
T Consensus 21 l~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~-~~a~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~~----~~~~~~ 93 (156)
T d1ihba_ 21 LQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLL-RGANPDLKDRT-GFAVIHDAARAGFLDTLQTLLE----FQADVN 93 (156)
T ss_dssp TTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTT
T ss_pred HHCCCCcCccCCcccccccccc-cccccccccccc-ccccccccccc-Cccccccccccccccccccccc----cccccc
Confidence 3456553 45677999999876 799999999885 46678888876 9999999999999999999999 577889
Q ss_pred cCcCCCChHHHHHHHcCCHHHHHHHHhCCC-CccccccCCCcceeeehhhccCCChHHHHHHHhhCC
Q 011578 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (482)
Q Consensus 80 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g 145 (482)
..|..|.+|||+|+..++.+++++|+++|+ +++.+|.+|+||||+|+ ..++.+++++|+++|
T Consensus 94 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~----~~~~~~iv~~Ll~~G 156 (156)
T d1ihba_ 94 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR----LYGRNEVVSLMQANG 156 (156)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTC
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHH----HcCCHHHHHHHHhcC
Confidence 999999999999999999999999999886 89999999999999999 889999999999987
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.7e-19 Score=162.60 Aligned_cols=204 Identities=17% Similarity=0.187 Sum_probs=144.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.+..++.. ...+..+||+||||||||++|+++++.+.........
T Consensus 9 ~~~~dlig~~~~~~~L~~~i~~---------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~ 73 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 73 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHHHHT---------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred CCHHHccChHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccch
Confidence 4688999999999999887431 1234559999999999999999999998753322211
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+++++.++.. ....++++++.. ...|+||||+|.|.. .+.+.|+
T Consensus 74 ~~~~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~-----------~~q~~Ll 136 (239)
T d1njfa_ 74 NCREIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 136 (239)
T ss_dssp HHHHHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHH
T ss_pred HHHHHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccCCH-----------HHHHHHH
Confidence 13344432211 112355565543 226999999999976 3448899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|+. ...++|++++.... + .+++++|| ..+.|++|+.+++.+++...+..+. ..++++++
T Consensus 137 k~lE~~~~~~~~il~tn~~~~--i---~~~i~SRc-~~i~~~~~~~~~i~~~l~~i~~~e~-----------~~~~~~~l 199 (239)
T d1njfa_ 137 KTLEEPPEHVKFLLATTDPQK--L---PVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRAL 199 (239)
T ss_dssp HHHHSCCTTEEEEEEESCGGG--S---CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHH
T ss_pred HHHhcCCCCeEEEEEcCCccc--c---ChhHhhhh-cccccccCcHHHhhhHHHHHHhhhc-----------cCCCHHHH
Confidence 99986 45556665443222 2 78899999 8999999999999999998887653 35688888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
..++... .|+.|.+.++++.+.... ...|+.+++.+.|.
T Consensus 200 ~~i~~~s-------~Gd~R~ain~l~~~~~~~-------------~~~I~~~~v~~~lg 238 (239)
T d1njfa_ 200 QLLARAA-------EGSLRDALSLTDQAIASG-------------DGQVSTQAVSAMLG 238 (239)
T ss_dssp HHHHHHT-------TTCHHHHHHHHHHHHHHT-------------TTSBCHHHHHHHHT
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHhC-------------CCCcCHHHHHHHhC
Confidence 8887754 577788888887765432 23588888887763
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.81 E-value=4.3e-22 Score=191.79 Aligned_cols=134 Identities=12% Similarity=0.045 Sum_probs=112.2
Q ss_pred CCCCCCCChHHHHHHhCCcHHHHHH---HHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccccc--
Q 011578 42 ERNPVMAQTPLHVSAGYNKAEIVKS---LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-- 116 (482)
Q Consensus 42 ~~~~~~g~tpLh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-- 116 (482)
.++.. |.||||+||.+|+.+++++ |++ .++++|.+|..|+||||+||..|+.++|++|+++|++++..+.
T Consensus 85 ~~~~~-~~t~L~~Aa~~g~~~~~~~~~~L~~----~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~ 159 (346)
T d2ajaa1 85 KKGIK-SEVICFVAAITGCSSALDTLCLLLT----SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 159 (346)
T ss_dssp HHTCC-HHHHHHHHHHHCCHHHHHHHTTC------CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred hccCC-CCcHHHHHHHhCCHHHHHHHHHHHh----CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccc
Confidence 34444 9999999999999988776 566 6899999999999999999999999999999999999998764
Q ss_pred CCCcceeeehhhccCCChHHHHHHHhhCCCCcc---ccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 117 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS---AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 117 ~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~---~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+|+||||+|+ ..|+.++|++|++.|++.. ..+.+|.||+ ++|...|+.+++++|++.|++....
T Consensus 160 ~g~t~L~~Aa----~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l-~~A~~~g~~~iv~~Ll~~ga~~~~~ 226 (346)
T d2ajaa1 160 ENYHAFRLAA----ENGHLHVLNRLCELAPTEATAMIQAENYYAFR-WAAVGRGHHNVINFLLDCPVMLAYA 226 (346)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHH-HHHSTTCCHHHHHHHTTSHHHHHHH
T ss_pred CCCChhHHHH----HHhhHHHHHHHHHcCCcccccccccCCCcchh-hHHhhcCHHHHHHHHHhCCCCcchH
Confidence 6999999999 8999999999999998764 3344556666 7788889999999999999887644
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.7e-19 Score=169.95 Aligned_cols=223 Identities=17% Similarity=0.250 Sum_probs=158.5
Q ss_pred hHHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC
Q 011578 197 KMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 275 (482)
Q Consensus 197 ~~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~ 275 (482)
.+..+...++ .++||+.+++.+...+... ..+..-...+...+||.||||||||.+|++||+.++.
T Consensus 12 ~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~-------~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~------ 78 (315)
T d1r6bx3 12 TLKNLGDRLKMLVFGQDKAIEALTEAIKMA-------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI------ 78 (315)
T ss_dssp HHHHHHHHHTTTSCSCHHHHHHHHHHHHHH-------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHhCCeecChHHHHHHHHHHHHHH-------HccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC------
Confidence 3455556665 4899999999998864322 2333322334446899999999999999999998865
Q ss_pred CCeEEeeccccc-----cc-------ccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 276 DRVTEVQRTDLV-----GE-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 276 ~~~~~~~~~~~~-----~~-------~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
+|+.++.+++. ++ |+|.. +..+...+.....+|+++||+|++++ .+.+.|++.++
T Consensus 79 -~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-----------~V~~~lLqild 146 (315)
T d1r6bx3 79 -ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMD 146 (315)
T ss_dssp -EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHH
T ss_pred -CeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhcccccccc-----------hHhhhhHHhhc
Confidence 88888887653 22 33332 23356667778889999999999987 67799999997
Q ss_pred CCc-------------EEEEEecCchh--HH-----------------HH-HhcCccccCCCcceeeCCCCCHHHHHHHH
Q 011578 343 GGK-------------VVVIFAGYSEP--MK-----------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 343 ~~~-------------~~vi~~~~~~~--~~-----------------~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il 389 (482)
+|. .++|++++-.. +. .+ -.-.|.|++|+|.++.|.+++.++..+|+
T Consensus 147 ~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~ 226 (315)
T d1r6bx3 147 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV 226 (315)
T ss_dssp HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred cceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHH
Confidence 533 36666654110 00 00 01258999999999999999999999999
Q ss_pred HHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 390 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 390 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
...+.+...+.... .....++++++..++...+. ...++|.|+.++++-......
T Consensus 227 ~~~l~~~~~~l~~~--~i~l~~~~~a~~~l~~~~yd----~~~GaR~L~r~Ie~~i~~~la 281 (315)
T d1r6bx3 227 DKFIVELQVQLDQK--GVSLEVSQEARNWLAEKGYD----RAMGARPMARVIQDNLKKPLA 281 (315)
T ss_dssp HHHHHHHHHHHHHT--TEEEEECHHHHHHHHHHHCB----TTTBTTTHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhc--CcchhhHHHHHHHHHHhCCC----CCCChhhHHHHHHHHHHHHHH
Confidence 99888876654433 34456799999999987652 234579999998876665433
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1e-19 Score=164.32 Aligned_cols=207 Identities=20% Similarity=0.271 Sum_probs=139.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++++++.|..++. ....+++||+||||||||++|+++|+++.... ....+++.+
T Consensus 11 ~~~~divg~~~~~~~L~~~i~----------------~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~--~~~~~~e~~ 72 (227)
T d1sxjc2 11 ETLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKN--YSNMVLELN 72 (227)
T ss_dssp SSGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS--HHHHEEEEC
T ss_pred CCHHHccCcHHHHHHHHHHHH----------------cCCCCeEEEECCCCCChhHHHHHHHHHhhcCC--CcceeEEec
Confidence 467899999999999998843 12345799999999999999999999986321 111355666
Q ss_pred cccccccccccchhhHHHHHHh-----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec-Cc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~-~~ 354 (482)
.++..+...... ........ ....|++|||+|.+....+ +.|+..|+. ...++++++ ..
T Consensus 73 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~-----------~~Ll~~le~~~~~~~~~~~~~~~ 139 (227)
T d1sxjc2 73 ASDDRGIDVVRN--QIKDFASTRQIFSKGFKLIILDEADAMTNAAQ-----------NALRRVIERYTKNTRFCVLANYA 139 (227)
T ss_dssp TTSCCSHHHHHT--HHHHHHHBCCSSSCSCEEEEETTGGGSCHHHH-----------HHHHHHHHHTTTTEEEEEEESCG
T ss_pred ccccCCeeeeec--chhhccccccccCCCeEEEEEeccccchhhHH-----------HHHHHHhhhcccceeeccccCcH
Confidence 555433211111 11111111 1225999999999987443 677777764 344444443 33
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+++++|+ ..+.|++|+.+++.+++...+.++. ..++++++..+++.. .|+.
T Consensus 140 ~~i------~~~i~sr~-~~i~~~~~~~~~i~~~l~~I~~~e~-----------i~i~~~~l~~i~~~s-------~Gd~ 194 (227)
T d1sxjc2 140 HKL------TPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEKALIELS-------NGDM 194 (227)
T ss_dssp GGS------CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHHHHHHHH-------TTCH
T ss_pred HHh------HHHHHHHH-hhhcccccccccccccccccccccc-----------ccCCHHHHHHHHHHc-------CCcH
Confidence 332 78889998 8899999999999999999888753 356788999998876 4566
Q ss_pred chhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 435 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
|.+-+.++.+... ........||.+++.+++
T Consensus 195 R~ain~Lq~~~~~---------~~~~~~~~It~~~v~e~~ 225 (227)
T d1sxjc2 195 RRVLNVLQSCKAT---------LDNPDEDEISDDVIYECC 225 (227)
T ss_dssp HHHHHHTTTTTTT---------TCSSSCCCBCHHHHHHHT
T ss_pred HHHHHHHHHHHHh---------cCCCCCCeeCHHHHHHHh
Confidence 6666665544221 122334678999998875
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9e-21 Score=169.63 Aligned_cols=135 Identities=26% Similarity=0.335 Sum_probs=113.6
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC---------
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN--------- 117 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~--------- 117 (482)
+|+||||+||.+|+.++++.|++.....+++++.+|..|+||||+|+..|+.+++++|+++|++++..+..
T Consensus 2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~ 81 (228)
T d1k1aa_ 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 81 (228)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence 39999999999999999999885332367899999999999999999999999999999999877765554
Q ss_pred --------------------------------------------------------------CCcceeeehhhccCCChH
Q 011578 118 --------------------------------------------------------------GMTPLHLSVWYSIRSEDY 135 (482)
Q Consensus 118 --------------------------------------------------------------g~tpLh~A~~~~~~~~~~ 135 (482)
|.+|||.|+ ..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~----~~~~~ 157 (228)
T d1k1aa_ 82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV----ENNSL 157 (228)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH----HTTCH
T ss_pred ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH----Hhhhh
Confidence 455555555 56778
Q ss_pred HHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 136 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 136 ~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.+++.++++|.+++.+|..|.||||+|+ ..++.+++++|+++|++++.+.
T Consensus 158 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~Gad~n~~d 207 (228)
T d1k1aa_ 158 SMVQLLLQHGANVNAQMYSGSSALHSAS-GRGLLPLVRTLVRSGADSSLKN 207 (228)
T ss_dssp HHHHHHHHTTCCTTCBCTTSCBHHHHHH-HHTCHHHHHHHHHTTCCTTCCC
T ss_pred hhhhhhhhhccccccccccCcchHHHHH-HcCCHHHHHHHHHCCCCCCCCC
Confidence 8999999999999999999999995555 4678889999999998876554
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=8.8e-19 Score=164.56 Aligned_cols=221 Identities=19% Similarity=0.300 Sum_probs=153.9
Q ss_pred HHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 201 LENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 201 ~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
+.+.++ .++||+++++.+...+... ..+...+..+...++|+||||||||.+|+.||+.+... ..+++
T Consensus 17 l~~~L~~~v~GQ~~ai~~v~~~i~~~-------~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~----~~~~~ 85 (315)
T d1qvra3 17 LEEELHKRVVGQDEAIRAVADAIRRA-------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMI 85 (315)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHH-------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS----GGGEE
T ss_pred HHHHhcCeEeCHHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCC----CcceE
Confidence 344444 5899999999888764332 22232233333367899999999999999999988421 23788
Q ss_pred Eeecccccc------------cccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--
Q 011578 280 EVQRTDLVG------------EFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-- 344 (482)
Q Consensus 280 ~~~~~~~~~------------~~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-- 344 (482)
.++.+++.. .|+|.. +..+.+.+...+.+||||||||++++ .+++.|++.+++|
T Consensus 86 ~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~-----------~v~~~ll~~l~~g~~ 154 (315)
T d1qvra3 86 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRL 154 (315)
T ss_dssp EECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEE
T ss_pred EEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCH-----------HHHHHHHHHhccCce
Confidence 887765432 255543 34577778888889999999999987 6779999999864
Q ss_pred -----------cEEEEEecCchhH--H-----------------HHH--hcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 345 -----------KVVVIFAGYSEPM--K-----------------RVI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 345 -----------~~~vi~~~~~~~~--~-----------------~~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
..++|+|++-..- . ..+ .-.|+|.+|||.++.|.+++.+++.+|+...
T Consensus 155 ~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~ 234 (315)
T d1qvra3 155 TDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 234 (315)
T ss_dssp CCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHH
T ss_pred eCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHH
Confidence 2477777652110 0 000 1259999999999999999999999999988
Q ss_pred HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh
Q 011578 393 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
+.+...+....+ +...++++++..+++..+. ...++|.++.++++.+....
T Consensus 235 l~~l~~rl~~~~--i~l~i~~~~~~~L~~~~y~----~~~GAR~L~r~Ie~~i~~~L 285 (315)
T d1qvra3 235 LSYLRARLAEKR--ISLELTEAAKDFLAERGYD----PVFGARPLRRVIQRELETPL 285 (315)
T ss_dssp HHHHHHHHHTTT--CEEEECHHHHHHHHHHHCB----TTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcc--ccccccHHHHHHHHHhCCC----CCCCcchHHHHHHHHHHHHH
Confidence 888765543333 4567899999999987542 24467999999888776654
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.79 E-value=1.9e-20 Score=175.68 Aligned_cols=131 Identities=24% Similarity=0.286 Sum_probs=111.6
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC----------
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN---------- 117 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~---------- 117 (482)
+.||||+||..|+.++|++||+ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..
T Consensus 40 ~~t~l~~A~~~G~~~~v~~Ll~----~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~ 115 (291)
T d1s70b_ 40 DGAVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115 (291)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH----HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CchHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccc
Confidence 5699999999999999999999 68899999999999999999999999999999998765554443
Q ss_pred --------------------------------------------------------------------------------
Q 011578 118 -------------------------------------------------------------------------------- 117 (482)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (482)
T Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (291)
T d1s70b_ 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195 (291)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence
Q ss_pred ---CCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhh
Q 011578 118 ---GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 118 ---g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
|.||||+|+ ..|+.+++++|+++|+|+|.+|..|+||||+|+ ..++.+++++|+++|++++.++.
T Consensus 196 ~~~g~t~L~~a~----~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~-~~g~~~iv~lLl~~Gadv~~~d~ 263 (291)
T d1s70b_ 196 AKSGGTALHVAA----AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA-HWGKEEACRILVENLCDMEAVNK 263 (291)
T ss_dssp TTTCCCHHHHHH----HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCT
T ss_pred cCCCCChhhHHH----HcCChhhhcccccceecccccccCCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCcCC
Confidence 445555555 557889999999999999999999999996655 46778999999999998776543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=8.4e-19 Score=157.83 Aligned_cols=201 Identities=20% Similarity=0.213 Sum_probs=139.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.|..++. ....+++||+||||||||++|+++|+++..... ...+++++
T Consensus 12 ~~~~d~ig~~~~~~~L~~~~~----------------~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~--~~~~~~~n 73 (224)
T d1sxjb2 12 QVLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELN 73 (224)
T ss_dssp SSGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHH----------------cCCCCeEEEECCCCCCchhhHHHHHHHHhcccc--cccccccc
Confidence 467899999999999998743 224467999999999999999999999874211 11466777
Q ss_pred cccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~ 352 (482)
+++..+...- .....-|... +..|++|||+|.+....+ +.|+..++. ...+++.++
T Consensus 74 ~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~-----------~~ll~~~e~~~~~~~~i~~~~ 139 (224)
T d1sxjb2 74 ASDDRGIDVV---RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ-----------QALRRTMELYSNSTRFAFACN 139 (224)
T ss_dssp TTSCCSHHHH---HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH-----------HTTHHHHHHTTTTEEEEEEES
T ss_pred ccccCCceeh---hhHHHHHHHhhccCCCcceEEEEEecccccchhHH-----------HHHhhhccccccceeeeeccC
Confidence 7664432110 0111112111 236999999999987544 667766664 334444454
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
+.+.+ .+++++|+ ..|.|++|+.+++..++...++++. ..++.+++..++... .|
T Consensus 140 ~~~~i------~~~l~sr~-~~i~~~~~~~~~i~~~l~~i~~~e~-----------~~i~~~~l~~I~~~s-------~G 194 (224)
T d1sxjb2 140 QSNKI------IEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAIIFTA-------EG 194 (224)
T ss_dssp CGGGS------CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------TT
T ss_pred chhhh------hhHHHHHH-HHhhhcccchhhhHHHHHHHHHhcc-----------cCCCHHHHHHHHHHc-------CC
Confidence 44433 78899999 7899999999999999999988753 356788888888876 57
Q ss_pred CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 433 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
+.|.+-+.++.+.... ..|+.+++.+.+
T Consensus 195 d~R~ai~~Lq~~~~~~--------------~~i~~~~i~~~~ 222 (224)
T d1sxjb2 195 DMRQAINNLQSTVAGH--------------GLVNADNVFKIV 222 (224)
T ss_dssp CHHHHHHHHHHHHHHH--------------SSBCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC--------------CCcCHHHHHHHh
Confidence 7777778877764432 346667666543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.79 E-value=4.2e-19 Score=160.70 Aligned_cols=187 Identities=25% Similarity=0.295 Sum_probs=131.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+..++.. ...+++||+||||+|||++|+++|+++.... ....++++++
T Consensus 22 ~~~diig~~~~~~~l~~~i~~----------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~--~~~~~~e~n~ 83 (231)
T d1iqpa2 22 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGEN--WRHNFLELNA 83 (231)
T ss_dssp STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG--HHHHEEEEET
T ss_pred CHHHccCcHHHHHHHHHHHHc----------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcc--cCCCeeEEec
Confidence 588999999999999988532 2446799999999999999999999885311 1125777887
Q ss_pred ccccccccccchhhHHHHH-----HhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRI-----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~-----~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
++..+..... ....... ......|++|||+|.+....+ +.|+..++. ..+++|++++...
T Consensus 84 s~~~~~~~~~--~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~-----------~~ll~~l~~~~~~~~~i~~~n~~~ 150 (231)
T d1iqpa2 84 SDERGINVIR--EKVKEFARTKPIGGASFKIIFLDEADALTQDAQ-----------QALRRTMEMFSSNVRFILSCNYSS 150 (231)
T ss_dssp TCHHHHHTTH--HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH-----------HHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CcccchhHHH--HHHHHHHhhhhccCCCceEEeehhhhhcchhHH-----------HHHhhhcccCCcceEEEeccCChh
Confidence 6643321110 1111111 123458999999999987444 667777764 3455555544332
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. .++++++|+ ..+.|++|+.+++..+++..++++. ..++.+++..+++.+ .|+.|.
T Consensus 151 ~-----i~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~e~-----------i~i~~~~l~~I~~~~-------~gdiR~ 206 (231)
T d1iqpa2 151 K-----IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAILYIA-------EGDMRR 206 (231)
T ss_dssp G-----SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHHHHH-------TTCHHH
T ss_pred h-----chHhHhCcc-ccccccccchhhHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc-------CCCHHH
Confidence 2 277889999 7899999999999999999988653 346778898888865 467777
Q ss_pred hHHHHHHHH
Q 011578 437 VDPMLVNAR 445 (482)
Q Consensus 437 l~~~~~~a~ 445 (482)
+.+.++.+.
T Consensus 207 ai~~Lq~~~ 215 (231)
T d1iqpa2 207 AINILQAAA 215 (231)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=7.2e-19 Score=161.44 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=126.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcC-CCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALG-LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
..|++++|++..+++|.+++............+ ...+.....+++|+||||||||++|+++|++++. .+..+
T Consensus 11 ~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~-------~~~~~ 83 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILEQ 83 (253)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEEE
T ss_pred CCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-------hhhcc
Confidence 358899999999999999876543222221111 1223345568999999999999999999998876 67778
Q ss_pred ecccccccccccchh-h----------H--HHH--HHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--C
Q 011578 282 QRTDLVGEFVGHTGP-K----------T--RRR--IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G 344 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~-~----------~--~~~--~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~ 344 (482)
+.++..+.+...... . . ... .......|+++||+|.+....+ ..+..+++.... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~--------~~~~~~~~~~~~~~~ 155 (253)
T d1sxja2 84 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTST 155 (253)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchh--------hhhHHHhhhhccccc
Confidence 777654432211100 0 0 000 0112347999999999987655 334555555443 3
Q ss_pred cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 345 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 345 ~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
.+++++++..... .+.+++| ...|+|++|+.+++..+++..+.++. + .+++++++.++...
T Consensus 156 ~ii~i~~~~~~~~------~~~l~~~-~~~i~f~~~~~~~i~~~l~~i~~~e~-------i----~i~~~~l~~i~~~s- 216 (253)
T d1sxja2 156 PLILICNERNLPK------MRPFDRV-CLDIQFRRPDANSIKSRLMTIAIREK-------F----KLDPNVIDRLIQTT- 216 (253)
T ss_dssp CEEEEESCTTSST------TGGGTTT-SEEEECCCCCHHHHHHHHHHHHHHHT-------C----CCCTTHHHHHHHHT-
T ss_pred ccccccccccccc------cccccce-eeeeeccccchhHHHHHHHHHHHHhC-------C----CCCHHHHHHHHHhC-
Confidence 3333333222222 2334544 49999999999999999999887643 3 34667788888754
Q ss_pred hHhhccccCcchhHHHHHHH
Q 011578 425 TEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~a 444 (482)
.|+.|.+-+.++.+
T Consensus 217 ------~GDiR~ai~~L~~~ 230 (253)
T d1sxja2 217 ------RGDIRQVINLLSTI 230 (253)
T ss_dssp ------TTCHHHHHHHHTHH
T ss_pred ------CCcHHHHHHHHHHH
Confidence 34444544445443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.1e-19 Score=153.89 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=130.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~~ 280 (482)
.++.++|.+...+++.+.+ ......+++|.||||+|||++++.+|..+.... ......+++
T Consensus 20 ~ld~~igRd~Ei~~l~~iL----------------~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ 83 (195)
T d1jbka_ 20 KLDPVIGRDEEIRRTIQVL----------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHH----------------TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred CCCCCcCcHHHHHHHHHHH----------------hccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence 3456889988877777652 123456899999999999999999999887522 244567999
Q ss_pred eecccccc--cccccchhhHHHHHHhc--C--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 281 VQRTDLVG--EFVGHTGPKTRRRIKEA--E--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 281 ~~~~~~~~--~~~g~~~~~~~~~~~~a--~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++.+.++. +|.|+-+.++..++++. . ..||||||++.+....++.++ ..+-+.|...|..|.+.+|++||+
T Consensus 84 ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~---~d~~~~Lkp~L~rg~l~~IgatT~ 160 (195)
T d1jbka_ 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALARGELHCVGATTL 160 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHHTTSCCEEEEECH
T ss_pred eeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCc---ccHHHHHHHHHhCCCceEEecCCH
Confidence 99988874 47788888888888653 2 359999999999865432211 234578888899999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHH
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il 389 (482)
+.+...++.+|+|.+|| ..|.+..|+.++-.+|+
T Consensus 161 eey~~~~e~d~aL~rrF-~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 161 DEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTE-EEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHcCHHHHhcC-CEeecCCCCHHHHHHHh
Confidence 99999999999999999 99999999999887765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=2e-18 Score=156.70 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=137.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.++.++. ....++++|+||||||||++++++|+++..... ......+++
T Consensus 9 ~~~~diig~~~~~~~l~~~i~----------------~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~-~~~~~~~~~ 71 (237)
T d1sxjd2 9 KNLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDL-MKSRILELN 71 (237)
T ss_dssp SSTTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH-HTTSEEEEC
T ss_pred CCHHHccCcHHHHHHHHHHHH----------------cCCCCeEEEECCCCCChHHHHHHHHHHHcCCcc-cccchhhee
Confidence 357889999999998887631 234567999999999999999999999843211 112445555
Q ss_pred ccccccc-ccccchhhHH---------HHHH---hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc---CCcE
Q 011578 283 RTDLVGE-FVGHTGPKTR---------RRIK---EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---GGKV 346 (482)
Q Consensus 283 ~~~~~~~-~~g~~~~~~~---------~~~~---~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~---~~~~ 346 (482)
.+...+. .+....+... ..+. .....||||||+|.+....+ +.++..++ ....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~-----------~~l~~~~~~~~~~~~ 140 (237)
T d1sxjd2 72 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQ-----------SALRRTMETYSGVTR 140 (237)
T ss_dssp SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHH-----------HHHHHHHHHTTTTEE
T ss_pred ccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHH-----------HHHhhcccccccccc
Confidence 5443221 1111110000 0011 12235999999999986333 45555544 3444
Q ss_pred EEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH
Q 011578 347 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE 426 (482)
Q Consensus 347 ~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 426 (482)
++++++..+.. .+++++|| ..+.|++|+.+++.++++..+.++. ..++++++..++...
T Consensus 141 ~i~~~~~~~~~------~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e~-----------i~i~~~~l~~ia~~s--- 199 (237)
T d1sxjd2 141 FCLICNYVTRI------IDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERILDIS--- 199 (237)
T ss_dssp EEEEESCGGGS------CHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHHHT---
T ss_pred ccccccccccc------cccccchh-hhhccccccccccchhhhhhhhhhc-----------CcCCHHHHHHHHHHc---
Confidence 44444444433 67788899 8999999999999999999887653 356889999998865
Q ss_pred hhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 427 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 427 ~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
.|+.|.+.+.++.+...+.... +...||.+++.+++
T Consensus 200 ----~gd~R~ai~~L~~~~~~~~~~~--------~~~~It~~~i~e~~ 235 (237)
T d1sxjd2 200 ----AGDLRRGITLLQSASKGAQYLG--------DGKNITSTQVEELA 235 (237)
T ss_dssp ----SSCHHHHHHHHHHTHHHHHHHC--------SCCCCCHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHhchhcC--------CCCccCHHHHHHhh
Confidence 5777887788887765542211 12368888888765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.76 E-value=7.9e-18 Score=160.79 Aligned_cols=235 Identities=16% Similarity=0.245 Sum_probs=145.1
Q ss_pred HHHHHh-hhhchHHHHHHHHHHHHH----HhHHHHHHH----------cCCCCCCCCCCceeEecCCCCchHHHHHHHHH
Q 011578 201 LENELS-NIVGLHELKIQLRKWAKG----MLLDERRKA----------LGLKVGARRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 201 ~~~~l~-~i~G~~~~k~~l~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+.+.++ .++||+++|+.+...+.. +..+..... .+..-...++.++||.||+|||||.+||+||+
T Consensus 11 i~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 11 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHh
Confidence 344444 489999999988754321 111111111 00111234778899999999999999999999
Q ss_pred HHHHcCCCCCCCeEEeecccccc-ccccc-chhhHHHHHH-------hcCCcEEEEecccccccCCCCC--C-ChhHHHH
Q 011578 266 LLYMVGILPTDRVTEVQRTDLVG-EFVGH-TGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKAD--D-KDYGIEA 333 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~-------~a~~~vl~iDE~d~l~~~~~~~--~-~~~~~~~ 333 (482)
.+.. +|+.++.+.+.. .|+|+ .+..+++++. .++++|+|+||+|+..+..... . +.....+
T Consensus 91 ~~~~-------~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V 163 (364)
T d1um8a_ 91 HLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGV 163 (364)
T ss_dssp HTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHH
T ss_pred hccc-------ceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHH
Confidence 7644 899999887654 37776 3445666643 4456999999999998754321 1 2234578
Q ss_pred HHHHHhhhcCCcE---------------EEEEecCc--------hhHH--------------------------------
Q 011578 334 LEEIMSVMDGGKV---------------VVIFAGYS--------EPMK-------------------------------- 358 (482)
Q Consensus 334 ~~~ll~~l~~~~~---------------~vi~~~~~--------~~~~-------------------------------- 358 (482)
.+.||+.|+++.+ +++.+++- ...+
T Consensus 164 ~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (364)
T d1um8a_ 164 QQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQ 243 (364)
T ss_dssp HHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCC
T ss_pred HHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhcccc
Confidence 8999999986321 23322211 1111
Q ss_pred --HHHh--cCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 359 --RVIA--SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 359 --~~~~--~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
..+. -.|+|.+|+|.++.|.+++.+++.+|+.. .+++.......+| +...++++++..++...+. .
T Consensus 244 ~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~g--i~L~~td~a~~~la~~g~d----~ 317 (364)
T d1um8a_ 244 THDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE--VDLIFEEEAIKEIAQLALE----R 317 (364)
T ss_dssp HHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT--CEEEECHHHHHHHHHHHHH----T
T ss_pred HHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECHHHHHHHHHhccC----C
Confidence 1111 24899999999999999999999999974 2332222222234 3456799999999997652 3
Q ss_pred ccCcchhHHHHHHHHHHh
Q 011578 431 EMNGGLVDPMLVNARENL 448 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~ 448 (482)
...+|.|+.++++.....
T Consensus 318 ~~GAR~L~riie~~l~~~ 335 (364)
T d1um8a_ 318 KTGARGLRAIIEDFCLDI 335 (364)
T ss_dssp TCTGGGHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 457899999999887764
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=1.2e-19 Score=171.31 Aligned_cols=143 Identities=22% Similarity=0.157 Sum_probs=108.4
Q ss_pred CCCCccCC-CCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCH-------HHHHHHHhC
Q 011578 36 NPSLLNER-NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-------EAAKLLLAH 107 (482)
Q Consensus 36 ~~~~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~-------~~v~~Ll~~ 107 (482)
.+.++|.. |.. |+||||+||..|+.++|++|++ .|++++.+|..|+||||+||..++. +++++|.
T Consensus 95 ~~~dvn~~~D~~-G~T~LH~Aa~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~-- 167 (301)
T d1sw6a_ 95 TQLNLNIPVDEH-GNTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY-- 167 (301)
T ss_dssp SCCCSCSCCSTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG--
T ss_pred cCCCcCcCcCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh--
Confidence 34566755 554 9999999999999999999999 6889999999999999999987752 3444443
Q ss_pred CCCccccccCCCcceeeehhhccCCChHHHHH--------HHhhCCCC--------------------------------
Q 011578 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVK--------TLLEYNAD-------------------------------- 147 (482)
Q Consensus 108 ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~--------~Ll~~gad-------------------------------- 147 (482)
.+++.+|..|+||||+++..+...+...+++ ++++.+..
T Consensus 168 -~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
T d1sw6a_ 168 -PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW 246 (301)
T ss_dssp -GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred -hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHH
Confidence 4567788999999999885554444444332 33333322
Q ss_pred -----ccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhh
Q 011578 148 -----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 148 -----~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
+|.+|.+|+||||+|+ ..++.+++++|+++|++++.++.
T Consensus 247 ~~~~~in~~D~~G~TpLh~A~-~~g~~~iv~~Ll~~GAd~~~~n~ 290 (301)
T d1sw6a_ 247 IIANMLNAQDSNGDTCLNIAA-RLGNISIVDALLDYGADPFIANK 290 (301)
T ss_dssp HHHHTTTCCCTTSCCHHHHHH-HHCCHHHHHHHHHTTCCTTCCCT
T ss_pred HHhcCccCCCCCCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCCCC
Confidence 6889999999995555 56788999999999998766543
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.75 E-value=2.8e-18 Score=152.35 Aligned_cols=124 Identities=25% Similarity=0.229 Sum_probs=108.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....+.++.+.+.........+.|+ ..+.+++..+.. |+||||+|+..+...+++.++. .+.+++.+|..|.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~-~~t~l~~~~~~~~~~~~~~l~~----~~~~~~~~d~~g~T 158 (209)
T d1ot8a_ 85 ARMHDGTTPLILAARLAIEGMVEDLI-TADADINAADNS-GKTALHWAAAVNNTEAVNILLM----HHANRDAQDDKDET 158 (209)
T ss_dssp CCCTTCCCHHHHHHHTTCTTHHHHHH-HTTCCTTCBCTT-SCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCC
T ss_pred cccccccccccccccccchhhhhhhh-hhcccccccCCC-CCCcchhhcccCcceeeeeecc----cccccccccccccc
Confidence 34445667777777777776666655 567778888776 9999999999999999999999 57788999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHH
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~L 141 (482)
|||+||..|+.+++++|+++|+|++.+|..|+||||+|+ ..|+.++|++|
T Consensus 159 pL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~----~~~~~~iv~lL 208 (209)
T d1ot8a_ 159 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVAS----ERLHHDIVRLL 208 (209)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHH
T ss_pred ccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HcCCHHHHhhc
Confidence 999999999999999999999999999999999999999 88999999986
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.71 E-value=7.8e-17 Score=150.13 Aligned_cols=243 Identities=11% Similarity=0.041 Sum_probs=145.8
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--CCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--TDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~--~~~~~~~~~ 283 (482)
+.+.|.+...+.|.+++.... . .+. ........++|+||||||||++++++++.+....... ...+..+++
T Consensus 16 ~~~~~Re~e~~~l~~~l~~~~---~---~~~-~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (287)
T d1w5sa2 16 PELRVRRGEAEALARIYLNRL---L---SGA-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 88 (287)
T ss_dssp SSCSSSCHHHHHHHHHHHHHH---H---TSS-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHHHHHH---H---cCC-CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecc
Confidence 356777766666666532111 1 011 0011122467789999999999999999986432211 123344443
Q ss_pred ccccc----------------cccccchhhHHHHHH-----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh-
Q 011578 284 TDLVG----------------EFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM- 341 (482)
Q Consensus 284 ~~~~~----------------~~~g~~~~~~~~~~~-----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l- 341 (482)
..... ...|.....+.+.+. .....++++||+|.+....+.. ......+..+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~--~~~~~~l~~l~~~l~ 166 (287)
T d1w5sa2 89 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA--AEDLYTLLRVHEEIP 166 (287)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC--HHHHHHHHTHHHHSC
T ss_pred ccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccc--hhHHHHHHHHHHhcc
Confidence 33211 122333333333332 2234788999999997654421 11112222233222
Q ss_pred ---cCCcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 342 ---DGGKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 342 ---~~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
......+|+ ++..+..+.+....|++.+||+..++|++|+.+++.+|++..++... ....++++++.
T Consensus 167 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~---------~~~~~~~~al~ 237 (287)
T d1w5sa2 167 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL---------RDTVWEPRHLE 237 (287)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB---------CTTSCCHHHHH
T ss_pred hhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhh---------ccCCCCHHHHH
Confidence 234544444 44455555555668899999999999999999999999999876432 12346888888
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
.+++.... .....|+.|.+.++++.|...+. .+....||.+|+.+|+.+
T Consensus 238 ~ia~~~~~-~~~~~gd~R~ai~~l~~a~~~A~---------~~~~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 238 LISDVYGE-DKGGDGSARRAIVALKMACEMAE---------AMGRDSLSEDLVRKAVSE 286 (287)
T ss_dssp HHHHHHCG-GGTSCCCHHHHHHHHHHHHHHHH---------HTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhc-cccCCCCHHHHHHHHHHHHHHHH---------HcCCCCCCHHHHHHHHhc
Confidence 88876532 11224677777788888876652 123357999999999875
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.71 E-value=1.7e-17 Score=150.27 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=146.9
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
.+|.+...+.+.+.+..+ +....+|+++||+|||||++|++|+.. +.....+++.+++..+.
T Consensus 2 ~v~~S~~~~~~~~~~~~~--------------a~~~~pvlI~Ge~GtGK~~~A~~ih~~----s~~~~~~~~~~~~~~~~ 63 (247)
T d1ny5a2 2 YVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKL----SDRSKEPFVALNVASIP 63 (247)
T ss_dssp CCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHH----STTTTSCEEEEETTTSC
T ss_pred eEecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHh----cCCcccccccchhhhhh
Confidence 456666555555544333 245668999999999999999999973 33445688888886543
Q ss_pred cc-----ccccc-------hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------
Q 011578 288 GE-----FVGHT-------GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------- 344 (482)
Q Consensus 288 ~~-----~~g~~-------~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----------- 344 (482)
.. .+|.. ......+|+.+.+|+|||||||.|....| ..|++.++.+
T Consensus 64 ~~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~~~~~~~ 132 (247)
T d1ny5a2 64 RDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQ-----------AKLLRVIESGKFYRLGGRKEI 132 (247)
T ss_dssp HHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHH-----------HHHHHHHHHSEECCBTCCSBE
T ss_pred hcccHHHhcCcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHH-----------HHHHHHHHhCCEEECCCCCce
Confidence 22 33321 11224578889999999999999987555 6667666532
Q ss_pred --cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 345 --KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 345 --~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
.+.+|++++.+....... -++.|..|+ ...|.+|++. .+++..|++.++.+.... ++.. ...++++++.
T Consensus 133 ~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~ls~~al~ 208 (247)
T d1ny5a2 133 EVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK---YAKE-VEGFTKSAQE 208 (247)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCC-CCEECHHHHH
T ss_pred ecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhh---cCCC-CCCCCHHHHH
Confidence 356777776654332211 134455555 4468888886 589999999998876532 1222 2468999999
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 472 (482)
.+..+.| +||.+++++++++|.... +...|+.+|+..
T Consensus 209 ~L~~~~W------PGNl~EL~~~l~~a~~~~------------~~~~I~~~dl~~ 245 (247)
T d1ny5a2 209 LLLSYPW------YGNVRELKNVIERAVLFS------------EGKFIDRGELSC 245 (247)
T ss_dssp HHHHSCC------TTHHHHHHHHHHHHHHHC------------CSSEECHHHHHH
T ss_pred HHHhCCC------CCHHHHHHHHHHHHHHhC------------CCCeECHHHccc
Confidence 9999999 999999999999998653 224578877753
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=1e-16 Score=153.64 Aligned_cols=216 Identities=20% Similarity=0.220 Sum_probs=138.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEEe
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEV 281 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~~ 281 (482)
++-++|.+.-.+++.+.+. .....+++|.||||+|||++++.+|..+... ..+....++.+
T Consensus 21 ld~~~gr~~ei~~~~~~L~----------------r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~l 84 (387)
T d1qvra2 21 LDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 84 (387)
T ss_dssp SCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCCcCcHHHHHHHHHHHh----------------cCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEe
Confidence 5567899988777777532 2355678999999999999999999988642 23344678999
Q ss_pred ecccccc--cccccchhhHHHHHHhc---C-CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 282 QRTDLVG--EFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 282 ~~~~~~~--~~~g~~~~~~~~~~~~a---~-~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
+.+.++. +|.|+-+..+..++... . +.||||||++.+....++ ..+..+-+.|...|..|.+.+|++||++
T Consensus 85 d~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~---~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ 161 (387)
T d1qvra2 85 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALARGELRLIGATTLD 161 (387)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEECHH
T ss_pred eHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCC---CCcccHHHHHHHHHhCCCcceeeecCHH
Confidence 9988875 47899888888887654 3 358999999999864432 2234667889999999999999999999
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
.+.. +..+|+|.+|| ..|.++.|+.++-..|++........ .....++++++........+.-..+.. -.
T Consensus 162 ey~~-~e~d~al~rrF-~~v~v~ep~~~~~~~il~~~~~~~e~-------~h~v~~~~~ai~~~v~ls~ryi~~r~~-Pd 231 (387)
T d1qvra2 162 EYRE-IEKDPALERRF-QPVYVDEPTVEETISILRGLKEKYEV-------HHGVRISDSAIIAAATLSHRYITERRL-PD 231 (387)
T ss_dssp HHHH-HTTCTTTCSCC-CCEEECCCCHHHHHHHHHHHHHHHHH-------HTTCEECHHHHHHHHHHHHHHCCSSCT-HH
T ss_pred HHHH-hcccHHHHHhc-ccccCCCCcHHHHHHHHHHHHHHHHh-------ccCCcccHHHHHHHHHhcccccccccC-hh
Confidence 9976 58899999999 99999999999999999977665432 223456667776665543211000011 12
Q ss_pred hhHHHHHHHHHHhh
Q 011578 436 LVDPMLVNARENLD 449 (482)
Q Consensus 436 ~l~~~~~~a~~~~~ 449 (482)
-.-.+++.|+....
T Consensus 232 KAidlld~a~a~~~ 245 (387)
T d1qvra2 232 KAIDLIDEAAARLR 245 (387)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 23456677666553
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.69 E-value=4.3e-16 Score=144.09 Aligned_cols=230 Identities=16% Similarity=0.168 Sum_probs=145.1
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.++|.+..++.+.+++.... . -...++.+++|+||||||||++|+++++.+.... ...++.+++...
T Consensus 17 ~l~~Re~ei~~l~~~l~~~l---~-------~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~---~~~~~~~~~~~~ 83 (276)
T d1fnna2 17 RLPHREQQLQQLDILLGNWL---R-------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYINGFIY 83 (276)
T ss_dssp CCTTCHHHHHHHHHHHHHHH---H-------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEETTTC
T ss_pred CCCCHHHHHHHHHHHHHHHH---h-------CCCCCCCceEEECCCCCCHHHHHHHHHHHHhccc---CCcEEEecchhh
Confidence 57888888777777654321 1 1124677999999999999999999999885422 224555554332
Q ss_pred cc----------------cccccchhhHHHHH-----HhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhh---hc
Q 011578 287 VG----------------EFVGHTGPKTRRRI-----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MD 342 (482)
Q Consensus 287 ~~----------------~~~g~~~~~~~~~~-----~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~---l~ 342 (482)
.. ...+.....+...+ ......++++|++|.+..... .....++.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~~~~~~~~~~~ 155 (276)
T d1fnna2 84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDIL--------STFIRLGQEADKLG 155 (276)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHH--------HHHHHHTTCHHHHS
T ss_pred hhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhh--------hhHHHHHhcccccc
Confidence 11 11121222222211 122347888999998875322 222333332 23
Q ss_pred CCcEEEEEecCchhHHHHHhcCccccCCC-cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 343 GGKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 343 ~~~~~vi~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
...+++|++++....... .+|++.+|+ ...|.|++|+.+++.+|++..++... ....++++++..++.
T Consensus 156 ~~~~~~i~~~~~~~~~~~--~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~---------~~~~~~~~~l~~ia~ 224 (276)
T d1fnna2 156 AFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL---------AEGSYSEDILQMIAD 224 (276)
T ss_dssp SCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB---------CTTSSCHHHHHHHHH
T ss_pred ccceEEeecCCchhhhhh--cchhhhhhhcchhccccchhHHHHHHHHHHHHHHhc---------ccccccHHHHHHHHH
Confidence 466777777655443322 367777776 46799999999999999998887532 123467888888777
Q ss_pred HHhhHh--hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 422 KETTEK--QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 422 ~~~~~~--~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
...... ....||.|.+.++++.|...+.. +....|+.+|+.+|++++
T Consensus 225 ~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~---------~~~~~I~~edv~~A~~~~ 273 (276)
T d1fnna2 225 ITGAQTPLDTNRGDARLAIDILYRSAYAAQQ---------NGRKHIAPEDVRKSSKEV 273 (276)
T ss_dssp HHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHH
T ss_pred HhhhhhhhhhcCCCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHH
Confidence 543211 12257788888999888776522 233579999999999986
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.67 E-value=8.1e-16 Score=150.25 Aligned_cols=163 Identities=12% Similarity=0.177 Sum_probs=104.0
Q ss_pred cEEEEecccccccCCCCCCChhH-HHHHHHHHhhhcCCc------------EEEEEecCchhHHHHHhcCccccCCCcce
Q 011578 308 GILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGGK------------VVVIFAGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~-~~~~~~ll~~l~~~~------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
+++|+||+++......+.+.+.. ..+...++..+++.. +.+++++..... .....-|.|.+||+.+
T Consensus 251 ~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~-~~~gliPEliGRlPi~ 329 (443)
T d1g41a_ 251 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA-RPSDLIPELQGRLPIR 329 (443)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC-CGGGSCHHHHTTCCEE
T ss_pred CccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhc-ccccchhhhccceEEE
Confidence 68999999999887665554444 355667777776533 344444322211 1111269999999999
Q ss_pred eeCCCCCHHHHHHHHH----HHHhccccccccccccccCcccHHHHHHHHHHHhhHhh-ccccCcchhHHHHHHHHHHhh
Q 011578 375 FHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ-RREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 375 i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~a~~~~~ 449 (482)
+.+.+++.++..+||. ..+++.......+|.+ ..++++++.++++....... .+...+|.|+.++++......
T Consensus 330 v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~--L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~ 407 (443)
T d1g41a_ 330 VELTALSAADFERILTEPHASLTEQYKALMATEGVN--IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 407 (443)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCE--EEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred EEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcE--EEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHh
Confidence 9999999999999984 2333333222223444 45689999999887653221 124467999999999988764
Q ss_pred hhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 450 LRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 450 ~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
-.+... ......|+.+-+.+.++.
T Consensus 408 f~~p~~---~~~~v~Id~~~v~~~l~~ 431 (443)
T d1g41a_ 408 FSASDM---NGQTVNIDAAYVADALGE 431 (443)
T ss_dssp HHGGGC---TTCEEEECHHHHHHHHTT
T ss_pred ccCCCC---CCCEEEECHHHHHhhhhc
Confidence 443321 112346677777666643
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.3e-16 Score=141.83 Aligned_cols=194 Identities=18% Similarity=0.220 Sum_probs=115.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-Ce----
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-RV---- 278 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~-~~---- 278 (482)
.|++++|++++++.|..+.. ....+.++||+||||||||++|+++|+.+......... ..
T Consensus 9 ~~~diig~~~~~~~L~~~~~---------------~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~ 73 (252)
T d1sxje2 9 SLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 73 (252)
T ss_dssp SGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CHHHccCcHHHHHHHHHHHH---------------cCCCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccc
Confidence 57899999999998886521 12245579999999999999999999987321111000 00
Q ss_pred ------EEeec---c---cccccccccchhh-HHHHHH-----------------hcCCcEEEEecccccccCCCCCCCh
Q 011578 279 ------TEVQR---T---DLVGEFVGHTGPK-TRRRIK-----------------EAEGGILFVDEAYRLIPMQKADDKD 328 (482)
Q Consensus 279 ------~~~~~---~---~~~~~~~g~~~~~-~~~~~~-----------------~a~~~vl~iDE~d~l~~~~~~~~~~ 328 (482)
..+.. . .......+..... ...... .....+++|||+|.+....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~----- 148 (252)
T d1sxje2 74 TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQ----- 148 (252)
T ss_dssp ---------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHH-----
T ss_pred ccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccc-----
Confidence 00000 0 0000011111111 111111 11235999999999976333
Q ss_pred hHHHHHHHHHhhhcC--CcEEEEEec-CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc
Q 011578 329 YGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF 405 (482)
Q Consensus 329 ~~~~~~~~ll~~l~~--~~~~vi~~~-~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~ 405 (482)
+.|+..++. ..+++|+++ +.+.+ .+++++|| ..|+|++|+.+++.+++...+.++. +
T Consensus 149 ------~~l~~~~e~~~~~~~~Il~tn~~~~i------~~~l~sR~-~~i~~~~~~~~~~~~~l~~i~~~e~-------~ 208 (252)
T d1sxje2 149 ------AALRRTMEKYSKNIRLIMVCDSMSPI------IAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER-------I 208 (252)
T ss_dssp ------HHHHHHHHHSTTTEEEEEEESCSCSS------CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-------C
T ss_pred ------hhhhcccccccccccceeeeccccch------hhhhhcch-heeeecccchhhHHHHHHHHHHHcC-------C
Confidence 666666664 445455553 33322 67889999 7999999999999999998887642 3
Q ss_pred cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 406 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.+. +.+.+..++... .|+.|..-+.++.+...
T Consensus 209 ~~~---~~~~l~~i~~~s-------~Gd~R~ai~~Lq~~~~~ 240 (252)
T d1sxje2 209 QLE---TKDILKRIAQAS-------NGNLRVSLLMLESMALN 240 (252)
T ss_dssp EEC---CSHHHHHHHHHH-------TTCHHHHHHHHTHHHHT
T ss_pred CCC---cHHHHHHHHHHc-------CCcHHHHHHHHHHHHHc
Confidence 332 346677777654 45666666666655543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.59 E-value=1.2e-15 Score=145.46 Aligned_cols=155 Identities=21% Similarity=0.252 Sum_probs=99.4
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC-----------
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL----------- 273 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~----------- 273 (482)
|.+|+|++.+|+.+.-.. + .....|+||.||||||||++||+++..|......
T Consensus 6 f~~I~Gq~~~kral~laa--~--------------~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~ 69 (333)
T d1g8pa_ 6 FSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 69 (333)
T ss_dssp GGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred hhhccCcHHHHHHHHHHH--h--------------ccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccc
Confidence 778999999998766321 1 0123589999999999999999999876210000
Q ss_pred ---------------CCCCeEEeecccccccccccc---------hh-hHHHHHHhcCCcEEEEecccccccCCCCCCCh
Q 011578 274 ---------------PTDRVTEVQRTDLVGEFVGHT---------GP-KTRRRIKEAEGGILFVDEAYRLIPMQKADDKD 328 (482)
Q Consensus 274 ---------------~~~~~~~~~~~~~~~~~~g~~---------~~-~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~ 328 (482)
...+++........+..+|.. +. .....+..|.++|+||||+..+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~-------- 141 (333)
T d1g8pa_ 70 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED-------- 141 (333)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH--------
T ss_pred cccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHH--------
Confidence 001222222222222223321 00 011355677889999999999987
Q ss_pred hHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHHHHHHHH
Q 011578 329 YGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH 390 (482)
Q Consensus 329 ~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~ 390 (482)
++++.|++.|+++. +++++|+++.+- . ..+++.+||+..+.++.|. .+++.++..
T Consensus 142 ---~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~-~---l~~~llDRf~~~i~v~~~~~~~~~~~~~~ 212 (333)
T d1g8pa_ 142 ---HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-D---LRPQLLDRFGLSVEVLSPRDVETRVEVIR 212 (333)
T ss_dssp ---HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-C---CCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ---HHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCcccc-c---cccchhhhhcceeeccCcchhhHHHHHHH
Confidence 66799999998643 356666555442 1 3788999999999998764 555555554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=3.6e-14 Score=124.94 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=93.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-----------------CCCeEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
.+..+||+||||+|||++|+.+|+.+....... ...+..+....- ...+ .-..++++.+.
T Consensus 23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~i--~~~~ir~l~~~ 99 (207)
T d1a5ta2 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNTL--GVDAVREVTEK 99 (207)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSSB--CHHHHHHHHHH
T ss_pred cCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhc-cccc--ccchhhHHhhh
Confidence 345599999999999999999999884221111 111222221110 0011 11234444443
Q ss_pred c-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecC-chhHHHHHhcCccccCCCcce
Q 011578 305 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 305 a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~-~~~~~~~~~~~~~l~~R~~~~ 374 (482)
. ...|++|||+|.+... +.+.|+..||+ ..+++|++|+ .+.+ .|++++|+ ..
T Consensus 100 ~~~~~~~~~~kviIide~d~l~~~-----------a~n~Llk~lEep~~~~~fIl~t~~~~~l------l~tI~SRc-~~ 161 (207)
T d1a5ta2 100 LNEHARLGGAKVVWVTDAALLTDA-----------AANALLKTLEEPPAETWFFLATREPERL------LATLRSRC-RL 161 (207)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH-----------HHHHHHHHHTSCCTTEEEEEEESCGGGS------CHHHHTTS-EE
T ss_pred hhhccccCccceEEechhhhhhhh-----------hhHHHHHHHHhhcccceeeeeecChhhh------hhhhccee-EE
Confidence 2 3369999999999984 44999999997 4566665543 3322 78899999 99
Q ss_pred eeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 375 FHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
+.|++|+.++...+++.. ..++.+++..++..
T Consensus 162 i~~~~~~~~~~~~~L~~~----------------~~~~~~~~~~i~~~ 193 (207)
T d1a5ta2 162 HYLAPPPEQYAVTWLSRE----------------VTMSQDALLAALRL 193 (207)
T ss_dssp EECCCCCHHHHHHHHHHH----------------CCCCHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHc----------------CCCCHHHHHHHHHH
Confidence 999999999998888532 13456666666654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.49 E-value=1.6e-13 Score=130.40 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=101.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc-cccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF-VGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
....++|+||||||||++|+++|+.++. +|+++++++..+.+ +|.. ....+.+||+++....
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~~-------~~i~in~s~~rs~~~l~~~----------~~~~~~l~d~~~~~~~ 215 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLDRLNFELGVA----------IDQFLVVFEDVKGTGG 215 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTTTHHHHHGGG----------TTCSCEEETTCCCSTT
T ss_pred CcCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEECcchhhHHHHHhH----------HHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999976 88999888765543 3322 2234555666665554
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCCc-----------E-----EEEEecCchhHHHHHhcCccc--cCCCcceeeCCCCCH
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGGK-----------V-----VVIFAGYSEPMKRVIASNEGF--CRRVTKFFHFNDFNS 382 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~~-----------~-----~vi~~~~~~~~~~~~~~~~~l--~~R~~~~i~~~~~~~ 382 (482)
.+.....-..-..++.|...++++. + .+|+||+. . ++++ ..||+..+.|..|+.
T Consensus 216 ~~~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~--~------~~~~~r~~Rf~~~i~~~~~~~ 287 (362)
T d1svma_ 216 ESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE--Y------SVPKTLQARFVKQIDFRPKDY 287 (362)
T ss_dssp TTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS--C------CCCHHHHTTEEEEEECCCCHH
T ss_pred hccCCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeeccc--c------cccccccccCceEEeecCCCc
Confidence 4433323222333344544444421 1 24444332 1 2222 349999999888876
Q ss_pred HHH-HHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhc
Q 011578 383 EEL-AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS 453 (482)
Q Consensus 383 ~~~-~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~ 453 (482)
..+ .+++...+++.. ...+.+.+..++.+.+ +++++++++.+......++.
T Consensus 288 ~~~~~~~l~~i~~~~~-----------l~~~~~~L~~li~~~s---------~~D~~~~i~~~~~~~~~~l~ 339 (362)
T d1svma_ 288 LKHCLERSEFLLEKRI-----------IQSGIALLLMLIWYRP---------VAEFAQSIQSRIVEWKERLD 339 (362)
T ss_dssp HHHHHHTCTHHHHTTC-----------TTCHHHHHHHHHHHSC---------GGGSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccC-----------CCCCHHHHHHHccCCC---------HHHHHHHHHHHHHHHHHHHh
Confidence 555 355555555432 2446677777776554 45677777777666555543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.31 E-value=5.4e-12 Score=111.00 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=106.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchh-hHHHHHHhc-CCcEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKEA-EGGILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~a-~~~vl~iDE~d~l~~~ 321 (482)
..+++|||||||||.|+.++++++...+. .++.++..++...+...... ...+.++.- ...+|+||++|.+..+
T Consensus 37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~ 112 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGY----RVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK 112 (213)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTC----CEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhccCcc----ceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCc
Confidence 35899999999999999999999976443 55666665554433221111 111222222 3489999999999753
Q ss_pred CCCCCChhHHHHH-HHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccc
Q 011578 322 QKADDKDYGIEAL-EEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE 398 (482)
Q Consensus 322 ~~~~~~~~~~~~~-~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~ 398 (482)
. .....+ +.+-..++.+..+++.++.+..... ...|.|.+|+ ..++.++ |+.+++.++++.++.+.
T Consensus 113 ~------~~~~~lf~lin~~~~~~~~iiits~~~p~~l~--~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~r-- 181 (213)
T d1l8qa2 113 E------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLD--GVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEF-- 181 (213)
T ss_dssp H------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT--TSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHT--
T ss_pred h------HHHHHHHHHHHHHhhccceEEEecCCcchhcc--ccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHc--
Confidence 2 222333 3333334556666666654322211 1257788888 5677786 67789999999988754
Q ss_pred ccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHH
Q 011578 399 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVN 443 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 443 (482)
| ..++++.+..++++. .+.|++..++..
T Consensus 182 -----g----l~l~~~v~~yl~~~~--------~~~R~L~~~l~~ 209 (213)
T d1l8qa2 182 -----N----LELRKEVIDYLLENT--------KNVREIEGKIKL 209 (213)
T ss_dssp -----T----CCCCHHHHHHHHHHC--------SSHHHHHHHHHH
T ss_pred -----C----CCCCHHHHHHHHHhc--------CcHHHHHHHHHH
Confidence 2 356788888888752 345777666654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=3.3e-11 Score=104.42 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=82.2
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEe
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVD 313 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iD 313 (482)
..+.++||+||||+|||++|+.+++.+... ......++.+.+.. +-+| -..++++.+.. ...|++||
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~-~~~h~D~~~i~~~~---~~I~--Id~IR~i~~~~~~~~~~~~~KviIId 86 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPEYVEKF-PPKASDVLEIDPEG---ENIG--IDDIRTIKDFLNYSPELYTRKYVIVH 86 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHHHHHTS-CCCTTTEEEECCSS---SCBC--HHHHHHHHHHHTSCCSSSSSEEEEET
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhcc-ccCCCCEEEEeCCc---CCCC--HHHHHHHHHHHhhCcccCCCEEEEEe
Confidence 356799999999999999999999987642 22233577776532 1122 23345554332 22699999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH
Q 011578 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS 382 (482)
Q Consensus 314 E~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~ 382 (482)
|+|.|....+ ++||..||+ +.+++++|++.+.+ .|++++|+ ..+.|+.|+.
T Consensus 87 ~ad~l~~~aq-----------NaLLK~LEEPp~~t~fiLit~~~~~l------l~TI~SRC-~~i~~~~p~~ 140 (198)
T d2gnoa2 87 DCERMTQQAA-----------NAFLKALEEPPEYAVIVLNTRRWHYL------LPTIKSRV-FRVVVNVPKE 140 (198)
T ss_dssp TGGGBCHHHH-----------HHTHHHHHSCCTTEEEEEEESCGGGS------CHHHHTTS-EEEECCCCHH
T ss_pred Cccccchhhh-----------hHHHHHHhCCCCCceeeeccCChhhC------HHHHhcce-EEEeCCCchH
Confidence 9999988444 999999996 34445555444443 79999999 8999987753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.83 E-value=3.4e-08 Score=89.99 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=88.2
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
++++|.+...+++.+. ....++++||+|+|||++++.+++.+.. .+..++...
T Consensus 12 ~~f~GR~~el~~l~~~--------------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~-------~~~~i~~~~ 64 (283)
T d2fnaa2 12 KDFFDREKEIEKLKGL--------------------RAPITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRK 64 (283)
T ss_dssp GGSCCCHHHHHHHHHT--------------------CSSEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGG
T ss_pred hhCCChHHHHHHHHhc--------------------cCCEEEEEcCCCCcHHHHHHHHHHHCCC-------CeEEEEecc
Confidence 5678888777766542 3457899999999999999999987753 222222211
Q ss_pred cccc----------------------------------------------ccccchhhHHHHH---Hh--cCCcEEEEec
Q 011578 286 LVGE----------------------------------------------FVGHTGPKTRRRI---KE--AEGGILFVDE 314 (482)
Q Consensus 286 ~~~~----------------------------------------------~~g~~~~~~~~~~---~~--a~~~vl~iDE 314 (482)
.... ........+.+++ .. ..+.++++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~ 144 (283)
T d2fnaa2 65 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDE 144 (283)
T ss_dssp GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEET
T ss_pred ccccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccch
Confidence 0000 0000111122222 22 2347899999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhc-CCcEEEEEecCchh-HHHHHh---cCccccCCCcceeeCCCCCHHHHHHHH
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEP-MKRVIA---SNEGFCRRVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~vi~~~~~~~-~~~~~~---~~~~l~~R~~~~i~~~~~~~~~~~~il 389 (482)
++.+..... . .....+...++ ...+..++++.... ...+.. ....+..|+...+.+++++.++..+++
T Consensus 145 ~~~~~~~~~---~----~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l 217 (283)
T d2fnaa2 145 AQELVKLRG---V----NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 217 (283)
T ss_dssp GGGGGGCTT---C----CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred hhhhcccch---H----HHHHHHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHH
Confidence 999875332 1 12222322222 24444444433332 222221 123345566688999999999999999
Q ss_pred HHHHhc
Q 011578 390 HIKMNN 395 (482)
Q Consensus 390 ~~~l~~ 395 (482)
+..+..
T Consensus 218 ~~~~~~ 223 (283)
T d2fnaa2 218 RRGFQE 223 (283)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 887764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.53 E-value=1.2e-08 Score=92.91 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
....|.++||+||||||||++|++||++++. +|+.++++++..
T Consensus 28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~-------~~~~i~~d~~~~ 70 (273)
T d1gvnb_ 28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQG-------NVIVIDNDTFKQ 70 (273)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTTT-------CCEEECTHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEecHHHHH
Confidence 3456778999999999999999999998876 788888876643
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.47 E-value=1.3e-07 Score=79.99 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++.||||+|||||++.++..+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~ 26 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC
Confidence 6899999999999999999998864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=3e-06 Score=69.97 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++|.|||||||||+|+.||+.++.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~ 28 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNM 28 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999998865
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.83 E-value=5.4e-06 Score=69.45 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
....++|+|||+||||++|.+|.+.++
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCccHHHHHHHHHHHhC
Confidence 335688999999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.79 E-value=3.4e-06 Score=70.26 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=24.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.+++.|||||||||+|+.||+.++.
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l~~ 30 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKSGL 30 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 357899999999999999999998865
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.77 E-value=2.4e-06 Score=72.20 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.++|.|||||||||+|++||+.++.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~ 33 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNT 33 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999998764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.75 E-value=0.00021 Score=64.12 Aligned_cols=48 Identities=15% Similarity=0.000 Sum_probs=33.8
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.++|.+.-.+.|.+.+.... ......+.++|++|+|||++|+.+.+..
T Consensus 21 ~~~gR~~~~~~i~~~L~~~~-------------~~~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEMC-------------DLDSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHHT-------------TSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceeCcHHHHHHHHHHHHhcc-------------CCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence 36777777777776543221 1223457799999999999999998753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.70 E-value=7.1e-06 Score=68.01 Aligned_cols=31 Identities=29% Similarity=0.614 Sum_probs=26.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
+.++|.|+||+||||+++.||+.++. +|+..
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l~~-------~fiD~ 32 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKALGV-------GLLDT 32 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC-------CEEEH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC-------CeEee
Confidence 35888899999999999999999976 77653
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.67 E-value=7.6e-06 Score=67.50 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=23.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++|.||||+||||+++.||+.++.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l~~ 26 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDLDL 26 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999999976
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.67 E-value=4.2e-06 Score=71.13 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.|..++|.|||||||||+|+.||+.++.
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~ 29 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTKYQL 29 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3678999999999999999999998843
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.67 E-value=1.3e-05 Score=67.07 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=25.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..|+|+|+||+||||+|++||+.|...+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~~ 34 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLNQQG 34 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 345588999999999999999999998744
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.65 E-value=8.9e-06 Score=67.74 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++|.||||+||||+|+.||+.++.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~ 28 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGY 28 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999999987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.65 E-value=1e-05 Score=67.33 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=24.6
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+.+.+++|+||||+||||+|+.||+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566799999999999999999999764
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=2.1e-05 Score=65.94 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=25.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
++++++||||||||++++.++..+...+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~ 30 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 57999999999999999999999976553
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.58 E-value=7.2e-06 Score=68.45 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=28.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
.-++|.|||||||||+|++|++.++. +++.++...
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~lg~-------~~~~~~~d~ 39 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLPGV-------PKVHFHSDD 39 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSS-------CEEEECTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecHHH
Confidence 34789999999999999999987654 677666543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.52 E-value=2e-05 Score=65.56 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+-|+|+||||+||||+|++|++.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~~ 29 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 356889999999999999999998764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00012 Score=68.16 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=26.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
.-++++||||||||+++..+...+..........+.-+.++
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApT 204 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 204 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCc
Confidence 46889999999999988766555543332233344444444
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=2e-05 Score=65.39 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.-++|.|||||||||+|+.|++.++.
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~~l~~ 32 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAHQLHA 32 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34678999999999999999998864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=3.4e-05 Score=65.39 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=24.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+..++|+|+||+||||+|+.||+.++..+
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~ 47 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHG 47 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 34567899999999999999999998743
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.46 E-value=2.1e-05 Score=65.22 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
-+++.|||||||||+|+.|++.+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.00032 Score=57.97 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..|.-+++.|+||+||||+|+.++...
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~ 38 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSA 38 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456678999999999999999987643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.43 E-value=3.2e-05 Score=65.70 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.|.-+++.||||+||||+|+.||+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456788999999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.38 E-value=4.3e-05 Score=64.64 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+...++|.||||+||||+|+.||+.++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=3.3e-05 Score=65.71 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+.++|.||||+||||+|+.||+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344578899999999999999999774
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.33 E-value=4.7e-05 Score=63.80 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.||||+||||+|+.||+.++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~ 26 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999998743
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=4.6e-05 Score=64.66 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
|+.+++.||||+||||+|+.||+.++
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999774
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=5e-05 Score=63.67 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|||||||||+|+.||+.++.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~ 26 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGI 26 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999998853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.30 E-value=2.8e-05 Score=66.12 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=30.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
.+.-++|.||||+||||+|+.||+.+ .+..++..+++..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~---------g~~~is~g~llr~ 45 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY---------GYTHLSTGDLLRA 45 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT---------CCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---------CCeeEeccHHHHH
Confidence 34568899999999999999999966 3556666665543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=6.5e-05 Score=62.91 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=28.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
..++|.||||+||||+|+.||+.++ +..++..++..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~g---------~~~i~~~d~~~ 38 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERFH---------AAHLATGDMLR 38 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC---------CEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---------CceEeccccce
Confidence 5688999999999999999999874 44556555543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.27 E-value=5.7e-05 Score=63.82 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=29.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
....++|.||||+||||+|+.||+.++ +..++..++.
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~g---------~~~is~gdll 41 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHFE---------LKHLSSGDLL 41 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHBC---------CEEEEHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHC---------CeEEcHHHHH
Confidence 456799999999999999999999763 4556655554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.25 E-value=0.0015 Score=55.41 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 238 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 238 ~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
++...|..++|.||+|+||||.+-.||..+...+
T Consensus 7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g 40 (211)
T d1j8yf2 7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKG 40 (211)
T ss_dssp SCSSSSEEEEEECSCCC----HHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3444566788999999999999999998776543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.0014 Score=55.43 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
...|..++|.||+|+||||.+-.||..+...
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~ 36 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 36 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3456668899999999999999999877543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.23 E-value=7e-05 Score=62.81 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.||||+||||+|+.||+.++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~ 26 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGT 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999998853
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.22 E-value=7.3e-05 Score=60.45 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.7
Q ss_pred eeEecCCCCchHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~ 266 (482)
++++||||+||||+|+.|+..
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 778999999999999988753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.22 E-value=8.9e-05 Score=63.58 Aligned_cols=30 Identities=33% Similarity=0.720 Sum_probs=25.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
|.-++++|.||+||||+|++||+.+...+.
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~ 31 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 456889999999999999999999987543
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.22 E-value=0.0014 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++|.||||+|||++++.|++...
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC
Confidence 488999999999999999999875
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.0014 Score=56.86 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=66.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH--cCCCCCCCeEEeeccc-c---------cc---cccccchhhHHHHHHhcC-C
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM--VGILPTDRVTEVQRTD-L---------VG---EFVGHTGPKTRRRIKEAE-G 307 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~--~~~~~~~~~~~~~~~~-~---------~~---~~~g~~~~~~~~~~~~a~-~ 307 (482)
..++++||..+|||++.|.++-.... .|.........+.+-+ + .. ..+...-..+..+++.+. .
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 121 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 121 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTT
T ss_pred eEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcccc
Confidence 45889999999999999999876542 3332222222222211 1 11 122223345666777665 4
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhh-cCCcEEEEEecCchhHHHHHhcCccc
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMKRVIASNEGF 367 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l-~~~~~~vi~~~~~~~~~~~~~~~~~l 367 (482)
++++|||+.+=.. ...+..+...+++.+ ......++++|+...........+.+
T Consensus 122 sLvliDE~~~gT~------~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~~~~~~~~v 176 (234)
T d1wb9a2 122 SLVLMDEIGRGTS------TYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGV 176 (234)
T ss_dssp EEEEEESCCCCSS------SSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTE
T ss_pred cEEeecccccCCC------hhhhhHHHHHhhhhhhccccceEEEecchHHHhhhhhcccce
Confidence 8999999954322 334445555666555 45555667776655444333334443
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.0012 Score=56.04 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=27.9
Q ss_pred CCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 237 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 237 ~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+....|..++|.||+|+||||.+-.||..+...+
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~ 39 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG 39 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 34455667788999999999999999998876543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00026 Score=58.13 Aligned_cols=29 Identities=41% Similarity=0.516 Sum_probs=25.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
+.+.++|+||||||||++.|++.+...|.
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~ 31 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPALCARGI 31 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 35789999999999999999999876553
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.16 E-value=0.0005 Score=60.13 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=57.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----------------------c---------
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------------------F--------- 290 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~--------- 290 (482)
+...++++||||+|||+++..+|......+. .+..++...-... +
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~----~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVENACANKE----RAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 100 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTC----CEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcc----ccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhh
Confidence 4556889999999999999999988643221 3333332210000 0
Q ss_pred cccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEe
Q 011578 291 VGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFA 351 (482)
Q Consensus 291 ~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~ 351 (482)
.......+...++.....+++||-++.+..... .......+..|...+....+.++++
T Consensus 101 ~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~i~~ 158 (242)
T d1tf7a2 101 LEDHLQIIKSEINDFKPARIAIDSLSALARGVS---NNAFRQFVIGVTGYAKQEEITGLFT 158 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC---HHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCceeeeecchhhhcCCC---HHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 000112233334445568999999988865322 2333445555556555544444444
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=9.1e-05 Score=61.87 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.||||+||||+|+.||+.++.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998753
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.13 E-value=0.00027 Score=55.90 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=17.8
Q ss_pred CCCceeEecCCCCchHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la 264 (482)
.....++.+|+|+|||+++-.+.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999998875443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.12 E-value=0.0027 Score=53.64 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+..++|.||+|+||||.+-.||..+...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~ 33 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 33 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45668899999999999999999877643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.08 E-value=0.0026 Score=53.79 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=23.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.-++|.||+|+||||.+-.||..+...+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g 38 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKG 38 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3467899999999999999999887644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.04 E-value=0.00018 Score=60.14 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+-+++.||||+||||+++.|++.+...+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999999999999997644
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.96 E-value=0.0016 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=19.4
Q ss_pred CCCceeEecCCCCchHHHHH-HHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVAR-ILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~-~la~~~ 267 (482)
....+++.+|+|+|||..+- ++.+..
T Consensus 6 ~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 45678999999999997764 444444
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00018 Score=62.13 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=27.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
-+.+.||||+||+|+|+.||+.++ |..++..++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g---------l~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---------CcEECHHHHH
Confidence 567789999999999999999885 4556655554
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.92 E-value=0.0032 Score=55.09 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=23.4
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+...+.+.||+|+||||+++.|+..+
T Consensus 38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 3455678899999999999999998754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.0031 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++|.||||+|||++++.|++...
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC
Confidence 3589999999999999999998764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.85 E-value=0.00025 Score=61.33 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.+.||||+||||+|+.||+.++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3557799999999999999999854
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.004 Score=53.89 Aligned_cols=27 Identities=19% Similarity=0.598 Sum_probs=23.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+...+.+.||+|+||||+++.|...+
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 455678899999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.84 E-value=0.00029 Score=59.01 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.3
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
++|.|+||+||||+++.|++.+...+
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~~ 29 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQG 29 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999998644
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.73 E-value=0.00051 Score=57.77 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=24.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+.-|.+.||+|+||||+|+.|+..+...+
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~ 50 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQG 50 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 334456999999999999999999998744
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.72 E-value=0.004 Score=54.39 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=23.1
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+...+.+.||+|+||||+++.|+..+
T Consensus 41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 3455678899999999999999998643
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.68 E-value=0.0041 Score=53.23 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=58.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH--cCCCCCCCeEEeeccccccc-------------ccccchhhHHHHHHhc-CCc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM--VGILPTDRVTEVQRTDLVGE-------------FVGHTGPKTRRRIKEA-EGG 308 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~g~~~~~~~~~~~~a-~~~ 308 (482)
-++++||...|||++.|.++-.... .|.........+..-+-+-. .+...-..+..+++.+ ..+
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~s 116 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENS 116 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTE
T ss_pred EEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccCCCCc
Confidence 4799999999999999999875532 23222222222222221111 1111234566677765 458
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchh
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 356 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~ 356 (482)
+++|||+.+=. ....+..+...+++.+.+....++++|+-..
T Consensus 117 LvliDE~~~gT------~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 117 LVLLDEVGRGT------SSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp EEEEESTTTTS------CHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred EEeecccccCc------chhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 99999985322 2333445555666665543344555554433
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.58 E-value=0.00051 Score=58.59 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|+|.||+||||+|+.|++.+..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~ 50 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVR 50 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566889999999999999999987753
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=96.45 E-value=0.0021 Score=56.84 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...-++|+|||+||||+++.+|++.++
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344578999999999999999999774
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.45 E-value=0.0086 Score=50.31 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.4
Q ss_pred CCceeEecCCCCchHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~ 261 (482)
..++++.+|+|+|||++|-
T Consensus 40 ~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHHH
Confidence 4579999999999999874
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.37 E-value=0.0096 Score=52.33 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=59.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc-c---cccc------------ch---hhHHHHHHh
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-E---FVGH------------TG---PKTRRRIKE 304 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~-~---~~g~------------~~---~~~~~~~~~ 304 (482)
.-..++||||||||++|-.++......+ +.++.++.-.-.. . -+|- .+ ..+..++++
T Consensus 58 ~itei~G~~~sGKT~l~l~~~~~aqk~g----~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~ 133 (268)
T d1xp8a1 58 RITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 133 (268)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred eEEEEecCCccchHHHHHHHHHHHHhCC----CEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhc
Confidence 3467999999999999999999887644 2455555432110 0 0110 11 112223334
Q ss_pred cCCcEEEEecccccccCCCCCC--Ch----hHHHHHH----HHHhhhcCCcEEEEEec
Q 011578 305 AEGGILFVDEAYRLIPMQKADD--KD----YGIEALE----EIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 305 a~~~vl~iDE~d~l~~~~~~~~--~~----~~~~~~~----~ll~~l~~~~~~vi~~~ 352 (482)
....+|+||=+..+.++...+. .+ ...+.+. .|...+....+.+|+++
T Consensus 134 ~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tN 191 (268)
T d1xp8a1 134 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 191 (268)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEe
Confidence 4568999999999986544221 11 1223344 44444455677777774
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.042 Score=46.04 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=36.0
Q ss_pred chhhHHHHHHhcC-----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 294 TGPKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 294 ~~~~~~~~~~~a~-----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
+...+.++++... -..|.+||+|.+... ++. ..+..++..+... .++++.||-+..+..+
T Consensus 126 TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~------~f~-~~v~~I~~~l~~~~Q~il~SATl~~~v~~~ 191 (206)
T d1s2ma1 126 TPGRVLDLASRKVADLSDCSLFIMDEADKMLSR------DFK-TIIEQILSFLPPTHQSLLFSATFPLTVKEF 191 (206)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH------HHH-HHHHHHHTTSCSSCEEEEEESCCCHHHHHH
T ss_pred CCcccccccccceeecccceEEEeechhhhhhh------hhH-HHHHHHHHhCCCCCEEEEEEEeCCHHHHHH
Confidence 4455555555422 157889999999852 122 3456777777654 4555566666666544
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.34 E-value=0.0048 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=19.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.++..|+|+|||.+|-.++..+
T Consensus 86 ~~~ll~~~tG~GKT~~a~~~~~~~ 109 (206)
T d2fz4a1 86 KRGCIVLPTGSGKTHVAMAAINEL 109 (206)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcEEEeCCCCCceehHHhHHHHh
Confidence 356788999999999988877655
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.014 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-.+++|+||+|||+++-.+|..+.
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~~ia 54 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAAQIA 54 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999998664
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0096 Score=52.20 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=44.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----cccc------------ch---hhHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH------------TG---PKTRRRIK 303 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~------------~~---~~~~~~~~ 303 (482)
..-..|+||||+|||++|-.++......+. .++.++.-.-... -.|- .+ ..+..+.+
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~----~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~ 129 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 129 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCC----EEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence 345779999999999999999998876542 3444444321100 0110 11 11222333
Q ss_pred hcCCcEEEEeccccccc
Q 011578 304 EAEGGILFVDEAYRLIP 320 (482)
Q Consensus 304 ~a~~~vl~iDE~d~l~~ 320 (482)
+....+|+||=+..+.+
T Consensus 130 ~~~~~liViDSi~al~~ 146 (263)
T d1u94a1 130 SGAVDVIVVDSVAALTP 146 (263)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEECcccccc
Confidence 44558999999988875
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.09 E-value=0.03 Score=46.56 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=19.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.++++.+|+|+|||.++-.++...
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~ 47 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYR 47 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHH
Confidence 358899999999999877776544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.07 E-value=0.0021 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=23.8
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
+.+.|++|+|||||+..|+.+|...|.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~ 30 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGW 30 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 458999999999999999999987654
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.039 Score=46.26 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=36.7
Q ss_pred chhhHHHHHHhcCC-----cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 294 TGPKTRRRIKEAEG-----GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 294 ~~~~~~~~~~~a~~-----~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
+...+.+.+....- ..|.+||+|.+.... +. ..+..++..+.. ..++++.||-++.+..+
T Consensus 129 TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~------f~-~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l 194 (206)
T d1veca_ 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD------FV-QIMEDIILTLPKNRQILLYSATFPLSVQKF 194 (206)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT------TH-HHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred CCccccccccchhccccccceEEEeccccccccc------hH-HHHHHHHHhCCCCCEEEEEEecCCHHHHHH
Confidence 44455555543221 689999999998532 22 345666677654 45666677777766554
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.89 E-value=0.0085 Score=52.62 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc------------ccccc---cchhh----HHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV------------GEFVG---HTGPK----TRRRI 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~------------~~~~g---~~~~~----~~~~~ 302 (482)
...-..|+||||+|||++|-.++......+. ..+.++.-.-. .+++- .+... +..++
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~----~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~ 134 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGG----VAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHHHHTTC----EEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHHhcCCC----EEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 3445779999999999999888887765432 34444432211 11100 01111 12223
Q ss_pred HhcCCcEEEEecccccccCCCC----CCCh--hHHHHHHHHHhhh----cCCcEEEEEec
Q 011578 303 KEAEGGILFVDEAYRLIPMQKA----DDKD--YGIEALEEIMSVM----DGGKVVVIFAG 352 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~~~~~----~~~~--~~~~~~~~ll~~l----~~~~~~vi~~~ 352 (482)
++....+|+||=+..+.++..- +... ...+.+..++..+ ....+.+|+++
T Consensus 135 ~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~N 194 (269)
T d1mo6a1 135 RSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (269)
T ss_dssp HTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred hcCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhh
Confidence 3344589999999998863221 1111 1224444444443 34566677764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.88 E-value=0.0023 Score=58.20 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=52.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec-cccc-------ccccccchhhHHHHHHh---cCCcEEE
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR-TDLV-------GEFVGHTGPKTRRRIKE---AEGGILF 311 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~g~~~~~~~~~~~~---a~~~vl~ 311 (482)
..++++.||+|+||||+.+++...+.. ...++.+.- .++. ..+.+..+-...++++. ..+..|+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~-----~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~ii 240 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPK-----EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII 240 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT-----TCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEeeccccchHHHHHHhhhccc-----ccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCccc
Confidence 357999999999999999999976532 223333321 1111 11122222223344433 3568999
Q ss_pred EecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 312 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 312 iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
+.|+-. + ++ ..+++.+..|..-+++|.+
T Consensus 241 vgEiR~--~-----------ea-~~~l~a~~tGh~g~~tT~H 268 (323)
T d1g6oa_ 241 LGELRS--S-----------EA-YDFYNVLCSGHKGTLTTLH 268 (323)
T ss_dssp ESCCCS--T-----------HH-HHHHHHHHTTCSCEEEEEC
T ss_pred CCccCc--h-----------hH-HHHHHHHHhcCCcEEEEEC
Confidence 999841 1 33 3467788776543444433
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.88 E-value=0.0088 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=20.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+..-++++||||+|||++|..++..
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4556889999999999999776543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.87 E-value=0.002 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
-++|.||||+||||+++.|.+...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999988653
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.84 E-value=0.02 Score=50.00 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 211 LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 211 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-++.++.+.++...+. ...+...||.|..|+|||.+|-..+.....
T Consensus 85 T~~Q~~ai~ei~~d~~-------------~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~ 130 (264)
T d1gm5a3 85 TNAQKRAHQEIRNDMI-------------SEKPMNRLLQGDVGSGKTVVAQLAILDNYE 130 (264)
T ss_dssp CHHHHHHHHHHHHHHH-------------SSSCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhh-------------ccCcceeeeeccccccccHHHHHHHHHHHh
Confidence 4556666666544442 346788999999999999999887765543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.82 E-value=0.0019 Score=51.77 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=27.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
.-++|.|+=|+|||+++|.+++.++......+..|
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF 68 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTT
T ss_pred eEEEEecCCCccHHHHHHHHHhhcccccccCCCce
Confidence 34789999999999999999999876544444443
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0019 Score=55.12 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.-+-+.||+|+||||+|+.|++.++..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~l~~~ 29 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQLLGQN 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 346689999999999999999988653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.62 E-value=0.061 Score=50.14 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=62.8
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
++++.-.+...+.++++. ..+..-+|+.||+|+||||+..++-..+.... ..++.+.-+
T Consensus 137 l~~LG~~~~~~~~l~~l~-----------------~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~----~~i~tiEdP 195 (401)
T d1p9ra_ 137 LHSLGMTAHNHDNFRRLI-----------------KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE----RNILTVEDP 195 (401)
T ss_dssp GGGSCCCHHHHHHHHHHH-----------------TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT----SCEEEEESS
T ss_pred hhhhcccHHHHHHHHHHH-----------------hhhhceEEEEcCCCCCccHHHHHHhhhhcCCC----ceEEEeccC
Confidence 456666666666666552 12445588999999999999999988774321 233333321
Q ss_pred -ccccc------ccccchhhHHHHHHh---cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEe
Q 011578 285 -DLVGE------FVGHTGPKTRRRIKE---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFA 351 (482)
Q Consensus 285 -~~~~~------~~g~~~~~~~~~~~~---a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~ 351 (482)
+..-. ..+.........++. ..+-||+|.|+... +.....++.-..|..++-.-
T Consensus 196 iE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~-------------~ta~~a~~aa~tGhlV~tTl 259 (401)
T d1p9ra_ 196 IEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDL-------------ETAQIAVQASLTGHLVMSTL 259 (401)
T ss_dssp CCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSH-------------HHHHHHHHHHHTTCEEEEEE
T ss_pred cccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCCh-------------HHHHHHHHHHhcCCeEEEEe
Confidence 21111 111222223333332 35689999999543 22244445555566555443
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.031 Score=47.56 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=30.7
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
..|.|||+|.+.... +. .-+..++..+.. ...+++.||-++.+..+
T Consensus 161 ~~lVlDEaD~ll~~~------f~-~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l 207 (222)
T d2j0sa1 161 KMLVLDEADEMLNKG------FK-EQIYDVYRYLPPATQVVLISATLPHEILEM 207 (222)
T ss_dssp CEEEEETHHHHTSTT------TH-HHHHHHHTTSCTTCEEEEEESCCCHHHHTT
T ss_pred eeeeecchhHhhhcC------cH-HHHHHHHHhCCCCCEEEEEEEeCCHHHHHH
Confidence 589999999998632 21 334666666654 45677777777776544
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.064 Score=44.26 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=18.6
Q ss_pred CceeEecCCCCchHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARIL 263 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~l 263 (482)
..+++.|.+|+|||+|.+.+
T Consensus 3 iKivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.008 Score=53.90 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=24.6
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..|.-+.+.|++|+||||+|+.|+..+..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~ 106 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHhh
Confidence 35556779999999999999999998853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0052 Score=50.65 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+.++|.||+|+|||+|++.|.+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999988754
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.23 Score=41.26 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=30.4
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
..+.+||+|.+.... .....+..++..+.. ..++++.||-++.+..+
T Consensus 147 ~~lVlDEaD~ll~~~------~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l 194 (207)
T d1t6na_ 147 KHFILDECDKMLEQL------DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 194 (207)
T ss_dssp CEEEEESHHHHHSSH------HHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHH
T ss_pred ceeehhhhhhhhhcC------CcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHH
Confidence 688999999998521 122345666666654 45666677777766554
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.082 Score=44.94 Aligned_cols=28 Identities=29% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+...|++|.+|+|||.++-..+...-
T Consensus 74 ~~~~~~LL~GdvGsGKT~V~~~a~~~~~ 101 (233)
T d2eyqa3 74 PLAMDRLVCGDVGFGKTEVAMRAAFLAV 101 (233)
T ss_dssp SSCCEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred cCccCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 4667899999999999999988776553
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.007 Score=51.28 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.7
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
+.|.|+.|+||||+++.|++.+...+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~~~g~ 32 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALCAAGH 32 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 667799999999999999999987554
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.097 Score=44.15 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=37.5
Q ss_pred chhhHHHHHHhcCC-----cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 294 TGPKTRRRIKEAEG-----GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 294 ~~~~~~~~~~~a~~-----~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
+...+.+++..... ..|.+||+|.+.... +. ..+..+++.+.. ..++++.||-+..+..+
T Consensus 138 TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~------f~-~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~ 203 (218)
T d2g9na1 138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG------FK-DQIYDIFQKLNSNTQVVLLSATMPSDVLEV 203 (218)
T ss_dssp CHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT------CH-HHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred CChhHHHHHhcCCcccccceEEEeeecchhhcCc------hH-HHHHHHHHhCCCCCeEEEEEecCCHHHHHH
Confidence 45566666654322 799999999998631 11 344566666654 45666667767766554
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.0036 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+..-++++||||||||+++-.++..
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456899999999999999988753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0047 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+..-++++||||+|||++|-.+|....
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999999987553
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.0084 Score=50.72 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
-+.|.|++|+||||+++.|++.+...|.
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L~~~g~ 31 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETLEQLGI 31 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 4778899999999999999999987553
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.90 E-value=0.045 Score=48.13 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+..-+++.|+||+|||+++..+|..+.
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la~~~a 60 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHhhh
Confidence 444688999999999999999986543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.86 E-value=0.0068 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|...+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999875
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0072 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
-+++.||+|+|||+|.+.|.+..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998864
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.79 E-value=0.35 Score=40.14 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=27.9
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
..|.|||+|.+.... +. ..+..++..+.. .+++++.||-++.+..+
T Consensus 147 ~~lViDEad~l~~~~------~~-~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~ 193 (208)
T d1hv8a1 147 KYFILDEADEMLNMG------FI-KDVEKILNACNKDKRILLFSATMPREILNL 193 (208)
T ss_dssp CEEEEETHHHHHTTT------TH-HHHHHHHHTSCSSCEEEEECSSCCHHHHHH
T ss_pred cEEEEEChHHhhcCC------Ch-HHHHHHHHhCCCCCeEEEEEccCCHHHHHH
Confidence 699999999886422 11 335666777754 34555556556555443
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.63 E-value=0.011 Score=49.75 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
+.+.|+.|+||||+++.|++.+...|.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~ 29 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678899999999999999999976553
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.085 Score=44.28 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=34.5
Q ss_pred chhhHHHHHHhcC-----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 294 TGPKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 294 ~~~~~~~~~~~a~-----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
+..++...+.... -..+.+||+|.+.... +. ..+..++..+.. ..++++.||-++.+..+
T Consensus 134 TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~------f~-~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l 199 (212)
T d1qdea_ 134 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG------FK-EQIYQIFTLLPPTTQVVLLSATMPNDVLEV 199 (212)
T ss_dssp CHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT------CH-HHHHHHHHHSCTTCEEEEEESSCCHHHHHH
T ss_pred CCCccccccccCceecCcceEEeehhhhhhcccc------hH-HHHHHHHHhCCCCCeEEEEEeeCCHHHHHH
Confidence 4445555554432 2688999999997521 12 334566666654 44555566656665544
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.0073 Score=52.54 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||++|..++...
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999998754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.56 E-value=0.0062 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-++++||||+|||++|-.++...
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999888754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.06 Score=43.33 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.7
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
-.+++.|++|+|||+|...+..
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999885
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.45 E-value=0.0092 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=19.3
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
|.-+-++|++|+||||+|+.|.+
T Consensus 3 p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44566899999999999999854
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.45 E-value=0.1 Score=43.59 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=35.3
Q ss_pred chhhHHHHHHhcCC-----cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 294 TGPKTRRRIKEAEG-----GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 294 ~~~~~~~~~~~a~~-----~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
+...+..++..... ..+.|||+|.+.... +. ..+..++..+.. ..++++.||-++.+..+
T Consensus 130 TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~------f~-~~v~~I~~~~~~~~Q~il~SATl~~~v~~l 195 (209)
T d1q0ua_ 130 TPGRINDFIREQALDVHTAHILVVDEADLMLDMG------FI-TDVDQIAARMPKDLQMLVFSATIPEKLKPF 195 (209)
T ss_dssp CHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT------CH-HHHHHHHHTSCTTCEEEEEESCCCGGGHHH
T ss_pred cCchhhhhhhhhccccccceEEEEeecccccccc------cH-HHHHHHHHHCCCCCEEEEEEccCCHHHHHH
Confidence 44445555544322 688999999998632 11 334566666644 45666667666665544
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.018 Score=52.16 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=30.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
....+-++||||+|||||..+++..+...+. ...++.++++.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~--~vavlavDpss 94 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGL--KVAVIAVDPSS 94 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTC--CEEEEEECCC-
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhcCC--ceeeecCCCce
Confidence 3456889999999999999999998876543 22345555543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.21 E-value=0.048 Score=49.13 Aligned_cols=42 Identities=31% Similarity=0.450 Sum_probs=31.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
....+-++||||+||||+...+...+...+. +..++.++++.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~--~vaViavDpss 91 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGH--KVAVLAVDPSS 91 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTC--CEEEEEECGGG
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCC--ceeeeeccccc
Confidence 3455779999999999999999988765443 23556666654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.16 E-value=0.011 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=19.8
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
-+.+.||+|+||||+.+.|+..+
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 45688999999999999999744
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.08 E-value=0.0056 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.|.-+.+.|+.|+||||+++.|++.+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455688999999999999999998764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.06 E-value=0.013 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
...++||.||||+|||++|-.+..
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 346799999999999999988776
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.02 E-value=0.012 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=21.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.....+.+.||+|+||||+.++++.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~g 53 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCcchhhHhccC
Confidence 3455688999999999999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.02 E-value=0.014 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=20.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~ 268 (482)
+++.||+|+|||||.+.|.+.+.
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Confidence 68999999999999999987664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=94.01 E-value=0.012 Score=50.62 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=21.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-+.+.||+|+||||+.++|+..+
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44467899999999999999999643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.016 Score=51.24 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.|.-+-+.|++|+||||++..|...+..
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~ 53 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIYNHLME 53 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence 4445568999999999999999887743
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.015 Score=49.67 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=22.2
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
....-+.+.||+|+||||+.+.++..+
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344567899999999999999999643
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.014 Score=46.50 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|...+.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999876
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.93 E-value=0.036 Score=47.54 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
..++++.+|+|+|||+++-..+......+ ...+.+.+.
T Consensus 58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~----~rvliv~Pt 95 (237)
T d1gkub1 58 KESFAATAPTGVGKTSFGLAMSLFLALKG----KRCYVIFPT 95 (237)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTS----CCEEEEESC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHHHhc----CeEEEEecc
Confidence 46799999999999987766655443222 245555554
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=93.93 E-value=0.21 Score=42.64 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=34.1
Q ss_pred chhhHHHHHHhcCC-----cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCchhHHHH
Q 011578 294 TGPKTRRRIKEAEG-----GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 294 ~~~~~~~~~~~a~~-----~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~~~~~~~ 360 (482)
+...+..+++...- ..++|||+|.+.... +... +..+++.+.. ...+++.||-+..+..+
T Consensus 155 TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~------f~~~-i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l 224 (238)
T d1wrba1 155 TPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG------FEPQ-IRKIIEESNMPSGINRQTLMFSATFPKEIQKL 224 (238)
T ss_dssp CHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT------CHHH-HHHHHHSSCCCCGGGCEEEEEESSCCHHHHHH
T ss_pred CHHHHHhHHccCceeccccceeeeehhhhhhhhc------cHHH-HHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHH
Confidence 44555555544321 688999999998532 1222 2444544432 35667777766666655
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.01 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=20.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
...-+.+.||+|+||||+.++|+.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 445678999999999999999986
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.83 E-value=0.021 Score=51.09 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCceeEecCCCCchHHH-HHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 243 PPHMAFLGNPGTGKTMV-ARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~l-a~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
..++++.|+||||||++ +..++..+...+. ....+..++.+
T Consensus 14 ~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-~~~~ILvlt~t 55 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFT 55 (306)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESS
T ss_pred CCCEEEEeeCCccHHHHHHHHHHHHHHhcCC-ChhHEEEEeCc
Confidence 45689999999999975 5666666543332 22234444443
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.80 E-value=0.014 Score=48.89 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+..-+.+.||.|+||||+.++|+..
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcc
Confidence 34456779999999999999999863
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.04 Score=48.45 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=26.6
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+......+++.|++|||||+++..+++....
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~ 69 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence 3456778999999999999999999997754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.76 E-value=0.015 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.9
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..++|.|+||+|||+|.+++..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.74 E-value=0.023 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=21.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
-+.+.|++|+||||++++|.+.+...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~ 32 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREG 32 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence 577999999999999999999997654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.73 E-value=0.014 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=20.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
...++||.||||+|||++|-.+..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999988765
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.68 E-value=0.033 Score=50.06 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=25.4
Q ss_pred CCceeEecCCCCchHHHH-HHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 243 PPHMAFLGNPGTGKTMVA-RILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la-~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++++.|+||||||+++ ..++..+.. +......++.+..+.
T Consensus 24 ~g~~lV~g~aGSGKTt~l~~ri~~ll~~-~~~~p~~il~lt~t~ 66 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVLTHRIAYLMAE-KHVAPWNILAITFTN 66 (318)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHT-TCCCGGGEEEEESSH
T ss_pred CCCEEEEecCCccHHHHHHHHHHHHHHc-CCCCHHHeEeEeccH
Confidence 356999999999999654 455665543 222223444454443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.67 E-value=0.018 Score=49.32 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
....-+.+.||+|+||||+.+.|+..+
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344567899999999999999999743
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=93.63 E-value=0.012 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
...-+.+.||+|+||||+.++|+..
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4445789999999999999999973
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.017 Score=46.97 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=18.9
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|+..+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 588999999999999998875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.51 E-value=0.016 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.++++.|+||+|||+|.+.+..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999865
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.37 E-value=0.02 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.2
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
..++||.|+||+|||++|-.+.+
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999977766
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.33 E-value=0.02 Score=47.49 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....+.+.+.|+||+|||||..+|.+
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHhcC
Confidence 33445799999999999999999974
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.021 Score=45.91 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|...+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.24 E-value=0.015 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....++|.|+||+|||+|..++..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.23 E-value=0.014 Score=50.19 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=22.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
....-+.+.||+|+||||+.++|+..
T Consensus 29 ~~Ge~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 34556889999999999999999973
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.21 E-value=0.018 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||+++-.+|-.+
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999999755
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.02 Score=49.72 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=23.1
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+...+.+.||+|+||||+++.|...+
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 3455678899999999999999998643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.12 E-value=0.023 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.8
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
+.|++.|+||+|||+|..++..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999876
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.10 E-value=0.023 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.++|.|++|+|||+|...+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=93.07 E-value=0.018 Score=49.69 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=22.7
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+...+.+.||+|+||||+++.|+..+
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 344567899999999999999998755
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.06 E-value=0.023 Score=45.91 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.4
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||+|...+..
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999999875
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.04 E-value=0.024 Score=50.04 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCCCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 238 VGARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 238 ~~~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+...+.+.||+|+||||+.++|+..+
T Consensus 57 l~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 57 LNIEKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344556678899999999999999999755
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.025 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
+.|+|.|+||+|||+|..+|.+
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999976
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.024 Score=45.60 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|.+.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=92.93 E-value=0.12 Score=45.76 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.5
Q ss_pred CCCceeEecCCCCchHH
Q 011578 242 RPPHMAFLGNPGTGKTM 258 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~ 258 (482)
....+++.+|+|+|||+
T Consensus 8 ~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 8 KKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp TTCEEEECCCTTSSTTT
T ss_pred cCCcEEEEECCCCCHHH
Confidence 45678999999999995
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.89 E-value=0.023 Score=46.12 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....+++.|.||+|||+|..++..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.025 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.8
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|++|+|||+|.+.+.+
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999886
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.027 Score=45.36 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||+|...+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999876
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=92.80 E-value=0.025 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....-+-+.||+|+||||++++|+.
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~G 50 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINF 50 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHc
Confidence 3455678999999999999999986
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.025 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.3
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|+||+|||+|++.+.+
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCcCHHHHHHHHhc
Confidence 3589999999999999998874
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.74 E-value=0.029 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....+++.|+||+|||+|...+..
T Consensus 15 ~~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999998853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.027 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.++++.|+||+|||+|+..+..
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998865
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=92.72 E-value=0.072 Score=47.00 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=20.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++.-|.|+|||.++-+++..+..
T Consensus 130 ~~il~~pTGsGKT~i~~~i~~~~~~ 154 (282)
T d1rifa_ 130 RRILNLPTSAGRSLIQALLARYYLE 154 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CceeEEEcccCccHHHHHHHHHhhh
Confidence 4677789999999999888876643
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.022 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
|+-+.+.|+-|+||||+++.|++.+..
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 455789999999999999999998754
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.70 E-value=0.027 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.|.+.|+||+|||+|.++|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999975
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.081 Score=44.07 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.7
Q ss_pred CceeEecCCCCchHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARIL 263 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~l 263 (482)
.++++.-|+|+|||.++...
T Consensus 41 ~~vlv~apTGsGKT~~~~~~ 60 (206)
T d1oywa2 41 RDCLVVMPTGGGKSLCYQIP 60 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCcchhhhh
Confidence 57999999999999876443
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.03 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||+|.+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.032 Score=44.94 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|.+|+|||+|.+.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.032 Score=46.87 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.6
Q ss_pred eeEecCCCCchHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~ 265 (482)
+.++|++|+||||+|+.+.+
T Consensus 6 IgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 45899999999999998864
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.034 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.0
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|...+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 588999999999999998865
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.29 E-value=0.033 Score=44.75 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=19.2
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|.+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.031 Score=45.33 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.7
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|.+|+|||+|.+.+..
T Consensus 7 ~Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 7 HKLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 4699999999999999998875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.034 Score=44.70 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|...+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.16 E-value=0.31 Score=41.06 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=30.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
..+++|.=++|+|||..|-+++..+...+.. .+++.+.+..+..
T Consensus 31 ~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~--~~~LIv~p~~l~~ 74 (230)
T d1z63a1 31 GFGICLADDMGLGKTLQTIAVFSDAKKENEL--TPSLVICPLSVLK 74 (230)
T ss_dssp TCCEEECCCTTSCHHHHHHHHHHHHHHTTCC--SSEEEEECSTTHH
T ss_pred CCCEEEEeCCCCChHHHHHHhhhhhhhcccc--cccceecchhhhh
Confidence 4578888899999999998888777643322 2455556655443
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.035 Score=44.83 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|.||+|||+|.+.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.039 Score=46.56 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=22.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.=+.|.|+-|+||||+++.|++.+..
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 44779999999999999999998754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.14 E-value=0.037 Score=44.32 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||+|...+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.00 E-value=0.039 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|.||||||+|+..+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.04 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.0
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||++++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998865
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.90 E-value=0.033 Score=46.69 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=17.4
Q ss_pred eeEecCCCCchHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~ 265 (482)
+-++|++||||||+|+.+.+
T Consensus 5 IgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999998864
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.04 Score=44.64 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.0
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|.||+|||+|++.+..
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.04 Score=44.24 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|++|+|||+|...+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999999875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.035 Score=44.72 Aligned_cols=22 Identities=45% Similarity=0.915 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~ 266 (482)
.+++.|++|+|||+|++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 4789999999999999988753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.028 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.1
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
.-.+++.|+||+|||+|...+..
T Consensus 6 ~~KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 6 LFKVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999988875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.041 Score=44.03 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.0
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|.+|+|||+|.+.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.79 E-value=0.034 Score=44.84 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.3
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
...+++.|++|+|||+|.+.+..
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHh
Confidence 35799999999999999999875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.041 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.7
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||+|...+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999988875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.04 Score=43.85 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.2
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|+||+|||+|..+|.+
T Consensus 3 kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.025 Score=46.24 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+......|.|.|+|++|||+|.++|..
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhC
Confidence 345567899999999999999999854
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.014 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
-+.+.||.|+||||+++.|++.+.
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=91.55 E-value=0.035 Score=47.71 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=37.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
+..-+.|.||+|+||||+.++|+..+ .++..-+.++..++... .. . ..++.+|.|+.+-..+.+
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~-----~p~~G~I~~~G~~i~~~----~~----~--~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLV-----RAQKGKIIFNGQDITNK----PA----H--VINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS-----CCSEEEEEETTEECTTC----CH----H--HHHHTTEEEECSSCCCCT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-----CCCccEEEecccccccc----cH----H--HHHHhcccccCcccccCC
Confidence 44457799999999999999999633 22223344444333211 10 1 112457888877556655
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.53 E-value=0.38 Score=39.13 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=19.7
Q ss_pred ceeEecCCCCchHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~ 266 (482)
.+++.|.+|+|||++.+.+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.046 Score=44.40 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.3
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
...+++.|++|+|||+|.+.+..
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHh
Confidence 34699999999999999999875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.51 E-value=0.048 Score=43.79 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.6
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|.+|+|||+|.+.+.+
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.045 Score=44.45 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.0
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||+|...+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988876
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.48 E-value=0.042 Score=44.83 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.|+|.|+||+|||+|..+|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.049 Score=43.73 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|.+|+|||+|.+.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.05 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.2
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
-.++|.|++|+|||+|...+..
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999998864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.04 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
...+++.|.+|+|||+|.+.+..
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.22 E-value=0.035 Score=45.34 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.3
Q ss_pred CCCCCceeEecCCCCchHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la 264 (482)
......+++.|+||+|||+|.+.+.
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHh
Confidence 3456789999999999999999874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.17 E-value=0.032 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....+++.|+||+|||++.+.+..
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred CeEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.08 E-value=0.046 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
.-.+++.|++|+|||++...+..
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 35689999999999999999876
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.94 E-value=0.058 Score=43.40 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.3
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|++|+|||+|...+..
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999998765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.90 E-value=0.056 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.++|.|++|+|||+|.+.+.+
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998876
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.88 E-value=0.056 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.4
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|++|+|||+|...+..
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhh
Confidence 3588999999999999998875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=90.68 E-value=0.059 Score=46.15 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=21.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-+-+.||.|+||||+.++|+..+
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44456799999999999999999744
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.67 E-value=0.042 Score=47.69 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+..-+.|.||.|+||||+.++|+..
T Consensus 29 ~Gei~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 29 KGDVTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCC
Confidence 4445789999999999999999863
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.63 E-value=0.062 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.4
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
...+|.|+||+|||+|..+|..
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~ 117 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINP 117 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCCHHHHHHhhcc
Confidence 4678999999999999999864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.61 E-value=0.054 Score=44.01 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.|.+.|+||+|||+|.++|.+
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~ 27 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLG 27 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.54 E-value=0.16 Score=44.63 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=26.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
.|.-++|.|.-|+||||+|-.+|..+...|.
T Consensus 7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~ 37 (296)
T d1ihua1 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGK 37 (296)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCcChHHHHHHHHHHHHHHCCC
Confidence 4566788999999999999999999987654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.066 Score=43.80 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.6
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|.+|+|||+|.+.+.+
T Consensus 10 ~Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 10 LKCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 4688999999999999998875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.42 E-value=0.04 Score=44.64 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=9.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|.||||||+|.+.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988875
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.29 E-value=0.073 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.6
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
+.|+|+.||||||+|+.|++.+
T Consensus 4 IgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6689999999999999998754
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.055 Score=46.19 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
...-+-+.||+|+||||+.++|+.
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 445577899999999999999986
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.071 Score=43.85 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.3
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|++|+|||+|...+..
T Consensus 4 iKvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999988875
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.14 E-value=0.46 Score=39.70 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.5
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.|++|+|||++.+.+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.88 E-value=0.032 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred ceeEecCCCCchHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~ 266 (482)
.+.|.|+||+|||+|..+|...
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999763
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=89.64 E-value=0.43 Score=42.02 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=31.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCeEEeecccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTEVQRTDLVGEF 290 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~~~~~~~~~~~~~ 290 (482)
...+.+|.=..|+|||..|-++...+...+.. ...+++-+.+..+...|
T Consensus 78 ~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW 129 (298)
T d1z3ix2 78 NSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNW 129 (298)
T ss_dssp TCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHH
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHH
Confidence 45689999999999998776665555433322 12346667776655543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.053 Score=43.74 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.3
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|++|+|||+|...+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988765
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.48 E-value=0.79 Score=39.47 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.++.+.|+.|+|||||+.+|....
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHc
Confidence 368899999999999999995443
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.38 E-value=0.081 Score=42.75 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.1
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.|+|.|.||+|||+|..+|.+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999975
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.26 E-value=0.068 Score=43.43 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=18.9
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.|.|.|+||+|||+|..+|.+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=89.07 E-value=0.082 Score=43.06 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.4
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
...|.+.|+||+|||+|..+|.+
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45789999999999999999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.99 E-value=0.076 Score=43.29 Aligned_cols=21 Identities=19% Similarity=0.540 Sum_probs=18.7
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.|.|.|+|++|||+|..+|.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998854
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.98 E-value=0.16 Score=43.89 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....++|.|.||+|||++..+|..
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg 54 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIG 54 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999975
|
| >d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase domain of protease Lon (La) species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.32 Score=34.53 Aligned_cols=87 Identities=16% Similarity=0.063 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhccccccccccc-cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCC
Q 011578 379 DFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL 457 (482)
Q Consensus 379 ~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~ 457 (482)
.|+.+|..+|.+.||-... ....|+ .-...++++++..+.+.++ +....|.|+..++..+++.+.++..+..
T Consensus 2 GYt~~EK~~Iak~yLiPk~--l~~~gl~~~~i~i~~~~l~~iI~~Yt-----rEaGVR~Ler~i~~I~Rk~a~~~~~~~~ 74 (94)
T d1qzma_ 2 GYTEDEKLNIAKRHLLPKQ--IERNALKKGELTVDDSAIIGIIRYYT-----REAGVRGLEREISKLCRKAVKQLLLDKS 74 (94)
T ss_dssp CCCHHHHHHHHHHTHHHHH--HHHTTCCTTTEEECHHHHHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHhHHHH--HHHhccccccccchHHHHHHHHHHHc-----cHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5788999999998884322 122355 3456789999999999987 2456899999999999988777543221
Q ss_pred ChhhhhcccHHHHHHHH
Q 011578 458 DTDELRTITLEDLEAGL 474 (482)
Q Consensus 458 ~~~~~~~i~~~d~~~al 474 (482)
.....|+.+++.+-|
T Consensus 75 --~~~~~i~~~~l~~~L 89 (94)
T d1qzma_ 75 --LKHIEINGDNLHDYL 89 (94)
T ss_dssp --CCCEEECTTTTHHHH
T ss_pred --CCCeeeCHHHHHHHc
Confidence 123467888777654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.43 E-value=0.43 Score=41.30 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.....++++|++|+|||+++.-+++..
T Consensus 66 gkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 66 AKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.11 E-value=0.75 Score=37.85 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++.+.|.+++|||||+.+|-...+
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g 28 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAA 28 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence 4788999999999999999976554
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=0.21 Score=46.71 Aligned_cols=37 Identities=35% Similarity=0.528 Sum_probs=26.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
..|+++.|++|+|||++.+.+...+...+ .+++.+++
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g----~~~iiiD~ 86 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRG----DRMVIVDP 86 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTT----CEEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCC----CCEEEEeC
Confidence 46899999999999999887766554432 24555554
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.82 E-value=0.11 Score=41.94 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
|...+++.|++|+|||+|...+..
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999998876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=87.79 E-value=0.059 Score=45.67 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=19.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
....+|.|+||+|||+|..+|....
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred cceEEEECCCCccHHHHHHhhccHh
Confidence 3457899999999999999997543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=87.74 E-value=0.056 Score=44.65 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.8
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
-.+|+||.|+|||++..||.-.+.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 356889999999999999997764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.79 E-value=0.11 Score=46.87 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..|.|-|+-|+||||+++.|++.+..
T Consensus 7 ~rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 7 VRIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEEECCccCCHHHHHHHHHHHhcc
Confidence 45789999999999999999997753
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.77 E-value=0.34 Score=42.04 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=24.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
.-++++|.-|+||||++-.||..+...|.
T Consensus 21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~ 49 (279)
T d1ihua2 21 GLIMLMGKGGVGKTTMAAAIAVRLADMGF 49 (279)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 34677899999999999999999887653
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=86.54 E-value=2.3 Score=32.36 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=19.1
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHc
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
-+++||=.+|||+-.-..++.+...
T Consensus 10 ~lI~GpMfSGKTteLi~~~~~~~~~ 34 (141)
T d1xx6a1 10 EVIVGPMYSGKSEELIRRIRRAKIA 34 (141)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEeccccHHHHHHHHHHHHhhhc
Confidence 3578999999999777777666543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=86.19 E-value=2.4 Score=32.25 Aligned_cols=19 Identities=37% Similarity=0.322 Sum_probs=14.7
Q ss_pred eEecCCCCchHH-HHHHHHH
Q 011578 247 AFLGNPGTGKTM-VARILGR 265 (482)
Q Consensus 247 ll~GppGtGKT~-la~~la~ 265 (482)
+++||=.+|||+ |.+.+.+
T Consensus 6 ~i~GpMfsGKTteLi~~~~~ 25 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLHR 25 (139)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHHH
Confidence 578999999999 5555544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.98 E-value=0.14 Score=43.25 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.6
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
.+-.+++|..|+||||+.+.+.+
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHH
T ss_pred CCEEEEeeCCCCCHHHHHHHHHh
Confidence 34578999999999999888876
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=0.26 Score=40.94 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.8
Q ss_pred CceeEecC-CCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGN-PGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~Gp-pGtGKT~la~~la~~~~~~~~ 272 (482)
+.++++|- +|+|||+++-.||..+...|.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~ 31 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGY 31 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCC
Confidence 35778888 599999999999999988765
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.27 E-value=0.14 Score=45.23 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.3
Q ss_pred CceeEecCCCCchHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~ 261 (482)
...||+|.+|||||||.-
T Consensus 15 ~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 15 DVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp CEEEEEECTTSCHHHHTC
T ss_pred CEEEEEccCCCCcccccc
Confidence 457999999999999764
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.17 E-value=2.7 Score=31.65 Aligned_cols=22 Identities=23% Similarity=0.085 Sum_probs=16.8
Q ss_pred eEecCCCCchHHHHHHHHHHHH
Q 011578 247 AFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 247 ll~GppGtGKT~la~~la~~~~ 268 (482)
+++||=.+|||+-.-..++...
T Consensus 6 li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 6 VILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEecccCHHHHHHHHHHHHHH
Confidence 5689999999986666666554
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.52 E-value=0.17 Score=44.45 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=14.9
Q ss_pred CceeEecCCCCchHHHH
Q 011578 244 PHMAFLGNPGTGKTMVA 260 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la 260 (482)
...+|+|-+|||||||.
T Consensus 15 ~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 15 DVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEEccCCCCcccce
Confidence 35789999999999976
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.07 E-value=0.17 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.|.+-|+-|+||||+++.|++.+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999997753
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.54 E-value=1.9 Score=37.12 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=22.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++.+.|+.|+|||||+.++....+
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g 31 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTG 31 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999976554
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.22 E-value=0.83 Score=42.00 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.+.++.+.|.||+|||++..+|-.
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G 78 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRG 78 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999964
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.05 E-value=0.23 Score=43.90 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.0
Q ss_pred ceeEecCCCCchHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~ 266 (482)
--+|+||.|+|||++..||+-.
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999653
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=82.73 E-value=0.19 Score=44.97 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=19.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.|.+-|+-|+||||+++.|++.+..
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~~ 30 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGSR 30 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC----
T ss_pred EEEEECCcCCCHHHHHHHHHHHhCC
Confidence 4778999999999999999987754
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.04 E-value=0.26 Score=43.56 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=15.2
Q ss_pred CceeEecCCCCchHHHH
Q 011578 244 PHMAFLGNPGTGKTMVA 260 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la 260 (482)
...||+|-+|||||||.
T Consensus 15 d~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 15 DVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEEccCCCCcccce
Confidence 45789999999999998
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.71 E-value=0.33 Score=39.29 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.5
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+++.|..|+|||++.+.+-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999988753
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.61 E-value=0.48 Score=35.14 Aligned_cols=28 Identities=4% Similarity=-0.059 Sum_probs=23.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....++|.|-+|+||+++|++|...+..
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999887753
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=80.62 E-value=0.75 Score=39.52 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=27.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+.++|.=|+||||+|-.||..+...|. .+.-++.
T Consensus 3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~----rVllID~ 37 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGK----TIMVVGC 37 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTC----CEEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhCCC----cEEEEec
Confidence 3567899999999999999999986554 4444554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.43 E-value=0.36 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.0
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
-+++||.|+|||++..||+-.+
T Consensus 28 ~~i~G~NGsGKS~ileAi~~~l 49 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAISFVL 49 (427)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999997543
|