Citrus Sinensis ID: 011588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
MSGPLDRFARPCFEGFSGSDERRERKSDFENSEDERRTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVKVLNSDGKVIAYAKPPMLKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKTSYAGSFSGYDEYVPMVDKAVDSSWKKQPSLRSPAAKGLQVCYCIYCLVNNLFDLSLGFVCL
ccccccccccccccccccccHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccEEEEEcccccHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccEEEEEcccccccccccHHHHHHHHHHHHHHHccccHHcccEEEEEcccHHHHHHHHHccccccccccEEEEEccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHcccEEEEEcccccEEEEEcHHHccHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEEEEcccccHHHccHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEcccccHHHHcccccccccEHHHcccEcccHHHccccccccccccHHHHHHHHccccccccEEEEccccccccEccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHcEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
msgpldrfarpcfegfsgsderrerksdfenseDERRTRIGSLKKKALNASTKFKhslkkkssrrksdgrvssvsiedvrdvEELQAVDAFRQSLimdellperhdDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVlsyyphgyhgvdkegrpvyierlgkvdsnklmqvTTMDRYIRYHVQGFEKAFavkfpactiaakrhidsstsildvQGVGLKNFSKNARELILRLQkidgdnypetLHQMFIINAGPGFRLLWNTVksfldpkttskiHVLGNKYQSKLLEIIDarelpeflggtcncadqggclrsdkgpwqnpeILKMVLNGGAPRARQIVKVLNSdgkviayakppmlkgsdtstaesgseaediaspkamksyshlrltpvreeakvvgktsyagsfsgydeyvpMVDKAvdsswkkqpslrspaakglQVCYCIYCLVNNLFDLSLGFVCL
msgpldrfarpcfegfsgsderrerksdfensederrtrigslkkkalnastkfkhslkkkssrrksdgrvssvsiedvrdveelqaVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHgyhgvdkegrPVYIERlgkvdsnklmqVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVKVLNSDGKViayakppmlkgsdtsTAESgseaediaspkamksyshlrltpvreeakvvgktsyagsfsgydeYVPMVDKAVDSSWKKQPSLRSPAAKGLQVCYCIYCLVNNLFDLSLGFVCL
MSGPLDRFARPCFEGFSGSDERRERKSDFENSEDERRTRIGSLKKKALNAstkfkhslkkkssrrksdgrvssvsIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVKVLNSDGKVIAYAKPPMLKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKTSYAGSFSGYDEYVPMVDKAVDSSWKKQPSLRSPAAKGLQVCYCIYCLVNNLFDLSLGFVCL
*********************************************************************************VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVKVLNSDGKVIAYA*******************************************KVVGKTSYAGSFSGYDEYVPMVDKAV**************AKGLQVCYCIYCLVNNLFDLSLGFVC*
******R******************************************************************************QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPR**************************************************************************GYDEYVPMVDKAVDS*****************VCYCIYCLVNNLFDLSLGFVCL
MSGPLDRFARPCFEGFS********************TRIGSLKKKALNAS************************IEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVKVLNSDGKVIAYAKPPML*****************ASPKAMKSYSHLRLTPVREEAKVVGKTSYAGSFSGYDEYVPMVDKA***************AKGLQVCYCIYCLVNNLFDLSLGFVCL
*******************************SE*E**TRIGSLKKKALNASTKFKHSLKKK*******GRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVKVL*******************************************LRL*******************SGYDEYVPMVDKAVDSSWKKQPSLRSPAAKGLQVCYCIYCLVNNLFDLSLGFVCL
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MSGPLDRFARPCFEGFSGSDERRERKSDFENSEDERRTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVKVLNSDGKVIAYAKPPMLKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKTSYAGSFSGYDEYVPMVDKAVDSSWKKQPSLRSPAAKGLQVCYCIYCLVNNLFDLSLGFVCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query482 2.2.26 [Sep-21-2011]
Q10137286 Sec14 cytosolic factor OS yes no 0.483 0.814 0.434 6e-51
P45816492 SEC14 cytosolic factor OS yes no 0.582 0.571 0.366 3e-49
P46250301 SEC14 cytosolic factor OS N/A no 0.558 0.893 0.400 4e-49
P24859301 SEC14 cytosolic factor OS yes no 0.522 0.837 0.400 6e-49
P24280304 SEC14 cytosolic factor OS yes no 0.533 0.845 0.381 7e-47
P53989302 SEC14 cytosolic factor OS yes no 0.489 0.781 0.397 1e-46
Q75DK1308 SEC14 cytosolic factor OS yes no 0.516 0.808 0.389 5e-46
P33324310 CRAL-TRIO domain-containi no no 0.537 0.835 0.368 1e-42
Q92503715 SEC14-like protein 1 OS=H yes no 0.452 0.304 0.346 2e-31
Q7PWB1684 Protein real-time OS=Anop yes no 0.450 0.317 0.334 4e-31
>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1 Back     alignment and function desciption
 Score =  202 bits (513), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 147/237 (62%), Gaps = 4/237 (1%)

Query: 103 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPH 162
           ER DD   +LRFL+ARKF++ ++  M+ +  +WRKEFGVD ++++F + E   V  YYP 
Sbjct: 46  ERLDD-ATLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQ 104

Query: 163 GYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRH 222
            YH  D +GRPVY+E+LG +D  KL Q+TT +R ++  V  +E     +FPAC+  A   
Sbjct: 105 FYHKTDIDGRPVYVEQLGNIDLKKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGL 164

Query: 223 IDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 282
           I++S +I+D++GVG+ +   +    I +   I  D YPE + + ++INA  GF   +N +
Sbjct: 165 IETSCTIMDLKGVGITSI-HSVYSYIRQASSISQDYYPERMGKFYVINAPWGFSSAFNLI 223

Query: 283 KSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQ 339
           K FLD  T  KIH+LG+ Y+S LLE I A  LP  LGG C C   GGC  SD GPW 
Sbjct: 224 KGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGGNCQCP--GGCELSDAGPWH 278
Has a direct role in controlling cell septation and in forespore membrane formation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|P53989|SEC14_CANGA SEC14 cytosolic factor OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC14 PE=3 SV=1 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2 Back     alignment and function description
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function description
>sp|Q7PWB1|RETM_ANOGA Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
255543761 624 phosphatidylinositol transporter, putati 0.941 0.727 0.879 0.0
356538743 629 PREDICTED: uncharacterized protein LOC10 0.950 0.728 0.872 0.0
224080383 636 predicted protein [Populus trichocarpa] 0.950 0.720 0.860 0.0
357467365 709 Sec14 cytosolic factor [Medicago truncat 0.948 0.644 0.876 0.0
357467367 623 Sec14 cytosolic factor [Medicago truncat 0.948 0.733 0.876 0.0
164564744 631 CM0216.430.nc [Lotus japonicus] 0.950 0.725 0.864 0.0
359474936 625 PREDICTED: uncharacterized protein LOC10 0.946 0.729 0.868 0.0
14486705 625 phosphatidylinositol transfer-like prote 0.950 0.732 0.869 0.0
356545143 629 PREDICTED: uncharacterized protein LOC10 0.997 0.764 0.806 0.0
449462204 623 PREDICTED: uncharacterized protein LOC10 0.946 0.731 0.877 0.0
>gi|255543761|ref|XP_002512943.1| phosphatidylinositol transporter, putative [Ricinus communis] gi|223547954|gb|EEF49446.1| phosphatidylinositol transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/457 (87%), Positives = 434/457 (94%), Gaps = 3/457 (0%)

Query: 1   MSGPLDRFARPCFEGFSGSDERRERKSDFENSEDERRTRIGSLKKKALNASTKFKHSLKK 60
           MSGPLDRFARPCFEGFSGSDERRERKSDFENSEDERRTRIGSLKKKA+NASTKFKHSLKK
Sbjct: 1   MSGPLDRFARPCFEGFSGSDERRERKSDFENSEDERRTRIGSLKKKAINASTKFKHSLKK 60

Query: 61  KSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKF 120
           KS+RRKSDGRVSSVSIEDVRDVEELQAVD FRQ+LIMDELLPERHDDYHMMLRFLKARKF
Sbjct: 61  KSNRRKSDGRVSSVSIEDVRDVEELQAVDEFRQALIMDELLPERHDDYHMMLRFLKARKF 120

Query: 121 DIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLG 180
           DI+KAKHMWA+MLQWRKEFG DT++EDFEFKE++EVL YYPHG HGVDK+GRPVYIERLG
Sbjct: 121 DIEKAKHMWADMLQWRKEFGADTVIEDFEFKELSEVLKYYPHGNHGVDKDGRPVYIERLG 180

Query: 181 KVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 240
           KVD +KLM VTTMDRY++YHV+ FEK+  +KFPACTIAAKRHIDSST+ILDVQGVGLKNF
Sbjct: 181 KVDPHKLMHVTTMDRYVKYHVREFEKSLKIKFPACTIAAKRHIDSSTTILDVQGVGLKNF 240

Query: 241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNK 300
           +K+AR+LI+RLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVK+FLDPKTTSKIHVLGNK
Sbjct: 241 TKSARDLIMRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKTFLDPKTTSKIHVLGNK 300

Query: 301 YQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVK 360
           YQSKLLE+IDA ELPEFLGGTC CADQGGCLRSDKGPW+NPEILKMVLNG A RARQ+VK
Sbjct: 301 YQSKLLEMIDASELPEFLGGTCTCADQGGCLRSDKGPWRNPEILKMVLNGEARRARQVVK 360

Query: 361 VLNSDGKVIAYAKP--PMLKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVV 418
           VLNS+GK I YAKP  PM+KGSDTSTAESGSEAEDIASPKA+KSYSHLRLTPVREEAKV+
Sbjct: 361 VLNSEGKFI-YAKPHYPMIKGSDTSTAESGSEAEDIASPKALKSYSHLRLTPVREEAKVI 419

Query: 419 GKTSYAGSFSGYDEYVPMVDKAVDSSWKKQPSLRSPA 455
           GK SYA +FSGYDEYVPMVDKAVDS WKKQ S + P+
Sbjct: 420 GKASYAANFSGYDEYVPMVDKAVDSGWKKQSSTQRPS 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356538743|ref|XP_003537860.1| PREDICTED: uncharacterized protein LOC100785793 [Glycine max] Back     alignment and taxonomy information
>gi|224080383|ref|XP_002306120.1| predicted protein [Populus trichocarpa] gi|222849084|gb|EEE86631.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357467365|ref|XP_003603967.1| Sec14 cytosolic factor [Medicago truncatula] gi|355493015|gb|AES74218.1| Sec14 cytosolic factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|357467367|ref|XP_003603968.1| Sec14 cytosolic factor [Medicago truncatula] gi|355493016|gb|AES74219.1| Sec14 cytosolic factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|164564744|dbj|BAF98225.1| CM0216.430.nc [Lotus japonicus] Back     alignment and taxonomy information
>gi|359474936|ref|XP_002283681.2| PREDICTED: uncharacterized protein LOC100252199 [Vitis vinifera] gi|297744421|emb|CBI37683.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|14486705|gb|AAK63247.1|AF367433_1 phosphatidylinositol transfer-like protein III [Lotus japonicus] Back     alignment and taxonomy information
>gi|356545143|ref|XP_003541004.1| PREDICTED: uncharacterized protein LOC100784405 [Glycine max] Back     alignment and taxonomy information
>gi|449462204|ref|XP_004148831.1| PREDICTED: uncharacterized protein LOC101208172 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
TAIR|locus:2136288 614 AT4G39170 [Arabidopsis thalian 0.943 0.741 0.782 2.4e-195
TAIR|locus:2050019 637 AT2G21520 [Arabidopsis thalian 0.950 0.718 0.760 2.1e-194
TAIR|locus:2018416 668 AT1G75370 [Arabidopsis thalian 0.935 0.675 0.624 2.7e-148
TAIR|locus:2013134 608 AT1G19650 [Arabidopsis thalian 0.906 0.718 0.628 2.5e-145
TAIR|locus:2049319548 SFH3 "SEC14-like 3" [Arabidops 0.755 0.664 0.646 2.3e-131
TAIR|locus:2139564554 COW1 "CAN OF WORMS1" [Arabidop 0.672 0.584 0.672 1.7e-126
TAIR|locus:2115265 543 SFH12 "AT4G36490" [Arabidopsis 0.639 0.567 0.741 1.3e-125
TAIR|locus:2136303554 SEC14 "SECRETION 14" [Arabidop 0.674 0.586 0.696 1.5e-124
TAIR|locus:2053114558 AT2G18180 "AT2G18180" [Arabido 0.742 0.641 0.646 6.3e-124
TAIR|locus:2042634547 AT2G16380 [Arabidopsis thalian 0.680 0.599 0.637 2.4e-115
TAIR|locus:2136288 AT4G39170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
 Identities = 363/464 (78%), Positives = 408/464 (87%)

Query:     1 MSGPLDRFARPCFEGFSGSDERRERKSDFENSEDERRTRIGSLKKKALNAXXXXXXXXXX 60
             MSGP+DRFA PCFEG   SDE++ERKSDFENSEDERRTRIGSLKKKA+NA          
Sbjct:     1 MSGPVDRFAIPCFEGILSSDEKKERKSDFENSEDERRTRIGSLKKKAINASTKFKHSLKK 60

Query:    61 XXXXXXXXXXXXXXXIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKF 120
                            IEDVRDVEELQAVD FRQ+L+M+ELLP +HDDYHMMLRFLKARKF
Sbjct:    61 KRRKSDVRVSSVS--IEDVRDVEELQAVDEFRQALVMEELLPHKHDDYHMMLRFLKARKF 118

Query:   121 DIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLG 180
             DI+KAKHMWA+M+QWRKEFG DTI++DF+F+EI+EVL YYPHGYH VDKEGRPVYIERLG
Sbjct:   119 DIEKAKHMWADMIQWRKEFGTDTIIQDFQFEEIDEVLKYYPHGYHSVDKEGRPVYIERLG 178

Query:   181 KVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 240
             KVD NKLMQVTT+DRYIRYHV+ FE++F +KFPACTIAAK++IDSST+ILDVQGVGLKNF
Sbjct:   179 KVDPNKLMQVTTLDRYIRYHVKEFERSFMLKFPACTIAAKKYIDSSTTILDVQGVGLKNF 238

Query:   241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNK 300
             +K+ARELI RLQKIDGDNYPETLHQMFIINAGPGFRLLW+TVKSFLDPKTTSKIHVLG K
Sbjct:   239 TKSARELITRLQKIDGDNYPETLHQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHVLGCK 298

Query:   301 YQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILKMVLNGGAPRARQIVK 360
             YQSKLLEIID+ ELPEFLGG C CADQGGC+ SDKGPW+NPEI+KMVL+GGA RA+Q+VK
Sbjct:   299 YQSKLLEIIDSSELPEFLGGACTCADQGGCMLSDKGPWKNPEIVKMVLHGGAHRAKQVVK 358

Query:   361 VLNSDGKVIAYAKP--PMLKGSDTSTAESGSEAEDIA-SPKAMKSYSHLRLTPVREEAKV 417
             VLNSDGKVIAYAKP  P +KGSDTSTAESGSEAEDI  SPKA+KSYSHLRLTPVREEAKV
Sbjct:   359 VLNSDGKVIAYAKPSYPWIKGSDTSTAESGSEAEDIVVSPKAVKSYSHLRLTPVREEAKV 418

Query:   418 -VGKTSYAGSFSGYDEYVPMVDKAVDSSWKKQPSL--RSPAAKG 458
               G+TS+AGSF+GYDEYVPMVDKAVD++WK +P+   R+P+ KG
Sbjct:   419 GSGETSFAGSFAGYDEYVPMVDKAVDATWKVKPTAINRAPS-KG 461
GO:0005215 "transporter activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0008526 "phosphatidylinositol transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2050019 AT2G21520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018416 AT1G75370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013134 AT1G19650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049319 SFH3 "SEC14-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115265 SFH12 "AT4G36490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053114 AT2G18180 "AT2G18180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042634 AT2G16380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
smart00516158 smart00516, SEC14, Domain in homologues of a S 5e-41
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 1e-38
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 3e-36
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 1e-11
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 2e-09
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 3e-09
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score =  143 bits (364), Expect = 5e-41
 Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 16/172 (9%)

Query: 152 EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVK 211
           E+  + +Y P G  G DK+GRPV IER G+ D        T++  +RY V   EK    +
Sbjct: 1   ELELLKAYIPGGR-GYDKDGRPVLIERAGRFDLKS----VTLEELLRYLVYVLEKILQEE 55

Query: 212 FPACTIAAKRHIDSSTSILDVQGVGLKNF-SKNARELILRLQKIDGDNYPETLHQMFIIN 270
                      I+  T I D++G+ + N      R+++    KI  D+YPE L +++IIN
Sbjct: 56  KK------TGGIEGFTVIFDLKGLSMSNPDLSVLRKIL----KILQDHYPERLGKVYIIN 105

Query: 271 AGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTC 322
               FR+LW  +K FLD KT  KI  +GN  + +LLE ID  +LPE LGGT 
Sbjct: 106 PPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDKEQLPEELGGTL 157

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 482
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.93
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.41
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.74
KOG4406467 consensus CDC42 Rho GTPase-activating protein [Sig 98.14
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-46  Score=376.16  Aligned_cols=264  Identities=47%  Similarity=0.774  Sum_probs=240.4

Q ss_pred             CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHHHHHHHhcc
Q 011588           81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYY  160 (482)
Q Consensus        81 d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~ev~k~~  160 (482)
                      ++.+.+.++++| |+..+++++...+|+++|||||||++||+++|+++|.+++.||++++.+.+..+  .....++.+++
T Consensus        19 ~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~--~~~~~~~~~~~   95 (317)
T KOG1471|consen   19 TESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED--FEEDDELLKYY   95 (317)
T ss_pred             cHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc--cccchhhhhhc
Confidence            356677777887 998999999755555799999999999999999999999999999999999876  23344556688


Q ss_pred             ccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCc
Q 011588          161 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF  240 (482)
Q Consensus       161 p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~  240 (482)
                      |++++|+|++|+||++.+.|..+...++..+...++.++++..+|+.+..+++.|.....++++|+++|+|++|+++.++
T Consensus        96 ~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~  175 (317)
T KOG1471|consen   96 PQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHL  175 (317)
T ss_pred             cccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhH
Confidence            99999999999999999999999999999999999999999999999999999988877889999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCccccCC
Q 011588          241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGG  320 (482)
Q Consensus       241 ~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP~~yGG  320 (482)
                      ...+..+++.++.++|+||||+++++||||+|++|+++|++++|||+++|++||++++.++.+.|+++|+++.||.+|||
T Consensus       176 ~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG  255 (317)
T KOG1471|consen  176 LKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGG  255 (317)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCC
Confidence            99999999999999999999999999999999999999999999999999999997777788999999999999999999


Q ss_pred             CcCCC---CCCCCccCCCCCCCCHHHHHHH
Q 011588          321 TCNCA---DQGGCLRSDKGPWQNPEILKMV  347 (482)
Q Consensus       321 ~~~~~---~~ggc~~~~~~~W~dp~~~k~v  347 (482)
                      +|.+.   ..++|..++.++|.++.+.+..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (317)
T KOG1471|consen  256 TCGDLDDPNGGGCDLSDEGPWKEPEIKKGK  285 (317)
T ss_pred             CccccccccCCcCccccccccccccccccc
Confidence            99996   3577999999999888665433

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 1e-47
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 1e-43
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 6e-43
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-22
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-22
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 5e-21
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 2e-09
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 5e-09
3hy5_A316 Crystal Structure Of Cralbp Length = 316 2e-05
3hx3_A316 Crystal Structure Of Cralbp Mutant R234w Length = 3 8e-05
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 151/253 (59%), Gaps = 3/253 (1%)
Query: 93  QSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKE 152
           + L+ D    ER DD   +LRFL+ARKFD+  AK M+    +WRK++G DTI++DF + E
Sbjct: 38  RKLLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDE 96
Query: 153 INEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKF 212
              +  +YP  YH  DK+GRPVY E LG V+ +++ +VT+ +R ++  V  +E     + 
Sbjct: 97  KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRL 156
Query: 213 PACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAG 272
           PAC+ AA   +++S +I+D++G+ + + + +    +     I  + YPE + + +IINA 
Sbjct: 157 PACSRAAGHLVETSCTIMDLKGISISS-AYSVMSYVREASYISQNYYPERMGKFYIINAP 215
Query: 273 PGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QGGCL 331
            GF   +   K FLDP T SKI +LG+ YQ +LL+ I A  LP   GG     + +GG  
Sbjct: 216 FGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLY 275
Query: 332 RSDKGPWQNPEIL 344
            SD GPW++P+ +
Sbjct: 276 LSDIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316 Back     alignment and structure
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-125
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-120
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 2e-98
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 6e-98
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 4e-77
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 4e-04
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  364 bits (937), Expect = e-125
 Identities = 102/275 (37%), Positives = 159/275 (57%), Gaps = 6/275 (2%)

Query: 81  DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFG 140
           D  + +A+   R+ L+ D    ER DD   +LRFL+ARKFD+  AK M+    +WRK++G
Sbjct: 27  DSAQEKALAELRK-LLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

Query: 141 VDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYH 200
            DTI++DF + E   +  +YP  YH  DK+GRPVY E LG V+ +++ +VT+ +R ++  
Sbjct: 85  TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144

Query: 201 VQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYP 260
           V  +E     + PAC+ AA   +++S +I+D++G+ + +   +    +     I  + YP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSA-YSVMSYVREASYISQNYYP 203

Query: 261 ETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGG 320
           E + + +IINA  GF   +   K FLDP T SKI +LG+ YQ +LL+ I A  LP   GG
Sbjct: 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263

Query: 321 TCNCAD-QGGCLRSDKGPWQNPEILKMVLNGGAPR 354
                + +GG   SD GPW++P+ +     G AP 
Sbjct: 264 KSEVDESKGGLYLSDIGPWRDPKYIGP--EGEAPE 296
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.15
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.87
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-56  Score=456.52  Aligned_cols=271  Identities=36%  Similarity=0.641  Sum_probs=247.0

Q ss_pred             cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhh
Q 011588           71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF  150 (482)
Q Consensus        71 ~~s~~ied~~d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~  150 (482)
                      .+++-..++ +++|+++|++||+||.++++ +...|| .+|||||||||||+++|.+||+++++||+++++|.+..++.+
T Consensus        27 ~~~g~~~~l-t~~q~~~l~~lR~~l~~~~~-~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~  103 (320)
T 3q8g_A           27 ALPGTPGNL-TKEQEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN  103 (320)
T ss_dssp             SCTTSTTCC-CHHHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence            344444444 89999999999999999884 566777 599999999999999999999999999999999999877655


Q ss_pred             H------HHHHHHhccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCC
Q 011588          151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID  224 (482)
Q Consensus       151 ~------el~ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~  224 (482)
                      +      +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.+.++|+...+..++
T Consensus       104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve  183 (320)
T 3q8g_A          104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE  183 (320)
T ss_dssp             THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred             ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence            4      4456778999999999999999999999999999988888999999999999999998888888877777899


Q ss_pred             CEEEEEeCCCCCCCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHH
Q 011588          225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK  304 (482)
Q Consensus       225 g~tiIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~  304 (482)
                      ++++|+|++|+++++++. .+.+++.+++++|++||+||+++||||+|++|+++|++++|||+++|++||+|+++++.+.
T Consensus       184 ~~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~  262 (320)
T 3q8g_A          184 TSCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE  262 (320)
T ss_dssp             CEEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred             eeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence            999999999999999875 3788999999999999999999999999999999999999999999999999999888899


Q ss_pred             HHhccCCCCCccccCCCcCCCC-CCCCccCCCCCCCCHHHHH
Q 011588          305 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK  345 (482)
Q Consensus       305 L~e~Id~~~LP~~yGG~~~~~~-~ggc~~~~~~~W~dp~~~k  345 (482)
                      |.++||+++||++|||+++|.+ +|||+.++.|||+||++++
T Consensus       263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~  304 (320)
T 3q8g_A          263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG  304 (320)
T ss_dssp             HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred             HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence            9999999999999999999976 6999999999999998875
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 482
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 4e-66
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 9e-54
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 4e-33
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 1e-23
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 6e-20
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 2e-12
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  209 bits (533), Expect = 4e-66
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 4/206 (1%)

Query: 150 FKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFA 209
           + E   +  +YP  YH  DK+GRPVY E LG V+ +++ +VT+ +R ++  V  +E    
Sbjct: 1   YDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQ 60

Query: 210 VKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFII 269
            + PAC+ AA   +++S +I+D++G+ + +   +    +     I  + YPE + + +II
Sbjct: 61  YRLPACSRAAGHLVETSCTIMDLKGISISSA-YSVMSYVREASYISQNYYPERMGKFYII 119

Query: 270 NAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QG 328
           NA  GF   +   K FLDP T SKI +LG+ YQ +LL+ I A  LP   GG     + +G
Sbjct: 120 NAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKG 179

Query: 329 GCLRSDKGPWQNPEILKMVLNGGAPR 354
           G   SD GPW++P+ +     G AP 
Sbjct: 180 GLYLSDIGPWRDPKYIGP--EGEAPE 203
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.59
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.47
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.26
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-40  Score=308.59  Aligned_cols=189  Identities=36%  Similarity=0.695  Sum_probs=177.0

Q ss_pred             HHhccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCC
Q 011588          156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV  235 (482)
Q Consensus       156 v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~  235 (482)
                      +.+++|+++||+|++||||+|+++|++|+.++.+..+.+++++++++.+|.+++...+.++...+.+++++++|+|++|+
T Consensus         7 ~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~   86 (203)
T d1auaa2           7 IAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGI   86 (203)
T ss_dssp             HGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred             HHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCC
Confidence            67999999999999999999999999999999999999999999999999999887777767777889999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCc
Q 011588          236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP  315 (482)
Q Consensus       236 sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP  315 (482)
                      ++++++. ...+++.+++++|++||++++++||||+|++|+++|+++++||+++|++||+|+++++.+.|.++||+++||
T Consensus        87 s~~~~~~-~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~LP  165 (203)
T d1auaa2          87 SISSAYS-VMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP  165 (203)
T ss_dssp             CHHHHHH-HHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSB
T ss_pred             ChHHhhh-HHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhCh
Confidence            9998864 468899999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             cccCCCcCCCC-CCCCccCCCCCCCCHHHHH
Q 011588          316 EFLGGTCNCAD-QGGCLRSDKGPWQNPEILK  345 (482)
Q Consensus       316 ~~yGG~~~~~~-~ggc~~~~~~~W~dp~~~k  345 (482)
                      .+|||+|+|++ .|+|...+.+||+||++++
T Consensus       166 ~~~GG~~~~~~~~g~~~~~~~~~~~~p~~~~  196 (203)
T d1auaa2         166 VKFGGKSEVDESKGGLYLSDIGPWRDPKYIG  196 (203)
T ss_dssp             GGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred             HHhCCCCcCCCCCCCccccCCCCCCChhhcC
Confidence            99999999965 5999999999999997753
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure