Citrus Sinensis ID: 011598

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNIAS
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEccccccccc
cccHEEEEHHHHHcHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
MLSNFAFSFSIISVLTGITTLyntglnfggpISLVYGWLIAGAFTLFVGSSMAEicssyptsgglyywsaklagpkwapfaswmtGWFNIVGQWAVTTSVDFSLAQMIQVIILLStggkngggyeaSKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFThfnsdngdginsKVYIFVLGLLMSQYTltgydasahmteetknadrngpkgiISAIGISIIFGWGYILGITFAVTsipnllsedndaggYAIAEIFYLAFKNrfgsgvggIVCLGVVAVAIFFCGmssvtsnsRMAYAfsrdgampfssfwhevnsqdipinAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARksfipgpfnlgryGIVVGWIAVLWVATISVLFslpvaypitsdtlnytpvAVCGLLILTVSAWIFSARhwfkgpitnias
MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFThfnsdngdgiNSKVYIFVLGLLMSQYTLTGYDASAHMTEetknadrngpKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNIAS
MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKgiisaigisiiFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNIAS
****FAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDAS***************KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPIT****
MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPIT****
MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNIAS
MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPI*****
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MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNIAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query482 2.2.26 [Sep-21-2011]
Q9ZU50516 Amino-acid permease BAT1 yes no 1.0 0.934 0.807 0.0
B9EXZ6520 Amino-acid permease BAT1 yes no 0.995 0.923 0.812 0.0
O60113542 Uncharacterized amino-aci yes no 0.960 0.854 0.331 2e-65
O74537557 Uncharacterized amino-aci no no 0.958 0.829 0.304 3e-52
Q09887544 Uncharacterized amino-aci no no 0.954 0.845 0.290 1e-51
Q9US40567 Uncharacterized amino-aci no no 0.941 0.800 0.309 1e-47
O59942541 Amino-acid permease 2 OS= N/A no 0.929 0.828 0.276 1e-46
O74248553 Putative polyamine transp N/A no 0.960 0.837 0.274 9e-45
P32837571 GABA-specific permease OS yes no 0.968 0.817 0.293 2e-43
P19807563 Choline transport protein no no 0.902 0.772 0.268 1e-39
>sp|Q9ZU50|BAT1_ARATH Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 Back     alignment and function desciption
 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/482 (80%), Positives = 439/482 (91%)

Query: 1   MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYP 60
           + SNFA SFSIISVLTGITT YNTGL FGG ++LVYGW +AG+FT+ VG SMAEICSSYP
Sbjct: 35  VFSNFAISFSIISVLTGITTTYNTGLRFGGTVTLVYGWFLAGSFTMCVGLSMAEICSSYP 94

Query: 61  TSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKN 120
           TSGGLYYWSA LAGP+WAP ASWMTGWFNIVGQWAVT SVDFSLAQ+IQVI+LLSTGG+N
Sbjct: 95  TSGGLYYWSAMLAGPRWAPLASWMTGWFNIVGQWAVTASVDFSLAQLIQVIVLLSTGGRN 154

Query: 121 GGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVST 180
           GGGY+ S +VVI  HGGIL +HA++NSLPIS+LSF GQLAA WNL+GV+VLMILIP VST
Sbjct: 155 GGGYKGSDFVVIGIHGGILFIHALLNSLPISVLSFIGQLAALWNLLGVLVLMILIPLVST 214

Query: 181 ERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240
           ERA+ KFVFT+FN+DNG GI S  YIFVLGLLMSQYT+TGYDASAHMTEET +AD+NGP+
Sbjct: 215 ERATTKFVFTNFNTDNGLGITSYAYIFVLGLLMSQYTITGYDASAHMTEETVDADKNGPR 274

Query: 241 GIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGG 300
           GIISAIGISI+FGWGYILGI++AVT IP+LLSE N++GGYAIAEIFYLAFKNRFGSG GG
Sbjct: 275 GIISAIGISILFGWGYILGISYAVTDIPSLLSETNNSGGYAIAEIFYLAFKNRFGSGTGG 334

Query: 301 IVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFI 360
           IVCLGVVAVA+FFCGMSSVTSNSRMAYAFSRDGAMP S  WH+VNS+++PINAVWLSA I
Sbjct: 335 IVCLGVVAVAVFFCGMSSVTSNSRMAYAFSRDGAMPMSPLWHKVNSREVPINAVWLSALI 394

Query: 361 SFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVG 420
           SFCMALT LGS VAFQAMVSIATIGLYIAYA+PI  RVTLAR +F+PGPF+LG+YG+VVG
Sbjct: 395 SFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVTLARNTFVPGPFSLGKYGMVVG 454

Query: 421 WIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNI 480
           W+AVLWV TISVLFSLPVAYPIT++TLNYTPVAV GL+ +T+S W+FSARHWF GPI+NI
Sbjct: 455 WVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVAITLSYWLFSARHWFTGPISNI 514

Query: 481 AS 482
            S
Sbjct: 515 LS 516
May play a role in primary carbon metabolism and plant growth, by mediating the transport of GABA from the cytosol to mitochondria. When expressed in a heterologous system (yeast), imports Arg and Ala across the plasma membrane and exports Lys and Glu, but does not transport proline.
Arabidopsis thaliana (taxid: 3702)
>sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1 Back     alignment and function description
>sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 Back     alignment and function description
>sp|O74537|YCQ4_SCHPO Uncharacterized amino-acid permease C74.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC74.04 PE=3 SV=1 Back     alignment and function description
>sp|Q09887|YC9D_SCHPO Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1 Back     alignment and function description
>sp|Q9US40|YFZ1_SCHPO Uncharacterized amino-acid permease C1039.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.01 PE=3 SV=1 Back     alignment and function description
>sp|O59942|AAP2_NEUCR Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2 Back     alignment and function description
>sp|O74248|GPT1_CANAX Putative polyamine transporter OS=Candida albicans GN=GPT1 PE=3 SV=1 Back     alignment and function description
>sp|P32837|UGA4_YEAST GABA-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA4 PE=1 SV=1 Back     alignment and function description
>sp|P19807|HNM1_YEAST Choline transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNM1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
255570677528 GABA-specific permease, putative [Ricinu 1.0 0.912 0.875 0.0
297737761522 unnamed protein product [Vitis vinifera] 0.995 0.919 0.860 0.0
356574238515 PREDICTED: uncharacterized amino-acid pe 0.995 0.932 0.831 0.0
356536274520 PREDICTED: uncharacterized amino-acid pe 0.995 0.923 0.833 0.0
225424097526 PREDICTED: uncharacterized amino-acid pe 0.993 0.910 0.837 0.0
356574240519 PREDICTED: uncharacterized amino-acid pe 0.995 0.924 0.816 0.0
242053561534 hypothetical protein SORBIDRAFT_03g02737 0.995 0.898 0.818 0.0
224099421435 amino acid transporter [Populus trichoca 0.902 1.0 0.889 0.0
212723070524 uncharacterized protein LOC100193963 [Ze 0.995 0.916 0.806 0.0
326519024522 predicted protein [Hordeum vulgare subsp 0.997 0.921 0.808 0.0
>gi|255570677|ref|XP_002526293.1| GABA-specific permease, putative [Ricinus communis] gi|223534374|gb|EEF36082.1| GABA-specific permease, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/482 (87%), Positives = 456/482 (94%)

Query: 1   MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYP 60
           + SNFAFSFSIISVLTGITTLYNTGLNFGGP+SL YGW IAG FT+FVG +MAEICSS+P
Sbjct: 47  VFSNFAFSFSIISVLTGITTLYNTGLNFGGPVSLQYGWFIAGLFTMFVGLAMAEICSSFP 106

Query: 61  TSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKN 120
           TSGGLYYWSAKLAGP+WAPFASW+TGWFNIVGQ+AVTTS+DFSLAQ+IQVIILLSTGGKN
Sbjct: 107 TSGGLYYWSAKLAGPRWAPFASWITGWFNIVGQFAVTTSIDFSLAQLIQVIILLSTGGKN 166

Query: 121 GGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVST 180
           GGGYEASKYVVI  HGGILLLHA++NSLPIS LSF GQLAA WNL+GV+VL ILIP V+T
Sbjct: 167 GGGYEASKYVVIGMHGGILLLHALLNSLPISALSFVGQLAAVWNLIGVVVLTILIPCVAT 226

Query: 181 ERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240
           ERASAKFVFTHFN+DNGDGINSK YIFVLGLLMSQYTLTGYDASAHMTEETK+AD+NGPK
Sbjct: 227 ERASAKFVFTHFNTDNGDGINSKAYIFVLGLLMSQYTLTGYDASAHMTEETKSADKNGPK 286

Query: 241 GIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGG 300
           GIISAIGIS+IFGW YILGITFAVT+IP LLSEDNDAGGYAIAEIFY AFK+R+GSGVGG
Sbjct: 287 GIISAIGISVIFGWFYILGITFAVTNIPYLLSEDNDAGGYAIAEIFYQAFKSRYGSGVGG 346

Query: 301 IVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFI 360
           I+CLGVVA+AIFFCGMSSVTSNSRMAYAFSRDGAMPFSS WH+VN Q++PINAVWL A I
Sbjct: 347 IICLGVVAIAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSLWHKVNKQEVPINAVWLGAVI 406

Query: 361 SFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVG 420
           SFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSF PGPF+LGR G++VG
Sbjct: 407 SFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFTPGPFSLGRCGVLVG 466

Query: 421 WIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNI 480
           WIAVLWV TIS+LFSLPVAYPIT++TLNYTPVAV GLLILTVS+WI SARHWFKGPITNI
Sbjct: 467 WIAVLWVVTISILFSLPVAYPITNETLNYTPVAVGGLLILTVSSWIVSARHWFKGPITNI 526

Query: 481 AS 482
            S
Sbjct: 527 DS 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737761|emb|CBI26962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574238|ref|XP_003555257.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|356536274|ref|XP_003536664.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|225424097|ref|XP_002279978.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574240|ref|XP_003555258.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|242053561|ref|XP_002455926.1| hypothetical protein SORBIDRAFT_03g027370 [Sorghum bicolor] gi|241927901|gb|EES01046.1| hypothetical protein SORBIDRAFT_03g027370 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|224099421|ref|XP_002311477.1| amino acid transporter [Populus trichocarpa] gi|222851297|gb|EEE88844.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|212723070|ref|NP_001132503.1| uncharacterized protein LOC100193963 [Zea mays] gi|194689974|gb|ACF79071.1| unknown [Zea mays] gi|194694562|gb|ACF81365.1| unknown [Zea mays] gi|223947789|gb|ACN27978.1| unknown [Zea mays] gi|414881773|tpg|DAA58904.1| TPA: hypothetical protein ZEAMMB73_484058 [Zea mays] Back     alignment and taxonomy information
>gi|326519024|dbj|BAJ92672.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326529285|dbj|BAK01036.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
TAIR|locus:2038811516 BAT1 "AT2G01170" [Arabidopsis 1.0 0.934 0.786 1.9e-211
ASPGD|ASPL0000060974530 AN1061 [Emericella nidulans (t 0.954 0.867 0.344 8.6e-72
POMBASE|SPBC15C4.04c542 SPBC15C4.04c "amino acid perme 0.958 0.852 0.325 1.3e-66
ASPGD|ASPL0000007717570 AN5968 [Emericella nidulans (t 0.956 0.808 0.313 2.1e-61
POMBASE|SPCC74.04557 SPCC74.04 "amino acid permease 0.954 0.825 0.302 1.6e-56
ASPGD|ASPL0000046410542 AN8990 [Emericella nidulans (t 0.952 0.846 0.317 2.5e-56
POMBASE|SPCC584.13544 SPCC584.13 "amino acid permeas 0.946 0.838 0.303 1.1e-55
UNIPROTKB|G4NFY0512 MGG_08670 "Choline transporter 0.946 0.890 0.305 1.8e-55
ASPGD|ASPL0000065674495 AN7392 [Emericella nidulans (t 0.678 0.660 0.296 7.8e-54
POMBASE|SPAC1039.01567 SPAC1039.01 "amino acid permea 0.939 0.798 0.308 6.3e-53
TAIR|locus:2038811 BAT1 "AT2G01170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2044 (724.6 bits), Expect = 1.9e-211, P = 1.9e-211
 Identities = 379/482 (78%), Positives = 428/482 (88%)

Query:     1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYP 60
             + SNFA SFSIISVLTGITT YNTGL FGG ++LVYGW +AG+FT+ VG SMAEICSSYP
Sbjct:    35 VFSNFAISFSIISVLTGITTTYNTGLRFGGTVTLVYGWFLAGSFTMCVGLSMAEICSSYP 94

Query:    61 TSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKN 120
             TSGGLYYWSA LAGP+WAP ASWMTGWFNIVGQWAVT SVDFSLAQ+IQVI+LLSTGG+N
Sbjct:    95 TSGGLYYWSAMLAGPRWAPLASWMTGWFNIVGQWAVTASVDFSLAQLIQVIVLLSTGGRN 154

Query:   121 GGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVST 180
             GGGY+ S +VVI  HGGIL +HA++NSLPIS+LSF GQLAA WNL+GV+VLMILIP VST
Sbjct:   155 GGGYKGSDFVVIGIHGGILFIHALLNSLPISVLSFIGQLAALWNLLGVLVLMILIPLVST 214

Query:   181 ERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240
             ERA+ KFVFT+FN+DNG GI S  YIFVLGLLMSQYT+TGYDASAHMTEET +AD+NGP+
Sbjct:   215 ERATTKFVFTNFNTDNGLGITSYAYIFVLGLLMSQYTITGYDASAHMTEETVDADKNGPR 274

Query:   241 XXXXXXXXXXXFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGG 300
                        FGWGYILGI++AVT IP+LLSE N++GGYAIAEIFYLAFKNRFGSG GG
Sbjct:   275 GIISAIGISILFGWGYILGISYAVTDIPSLLSETNNSGGYAIAEIFYLAFKNRFGSGTGG 334

Query:   301 IVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFI 360
             IVCLGVVAVA+FFCGMSSVTSNSRMAYAFSRDGAMP S  WH+VNS+++PINAVWLSA I
Sbjct:   335 IVCLGVVAVAVFFCGMSSVTSNSRMAYAFSRDGAMPMSPLWHKVNSREVPINAVWLSALI 394

Query:   361 SFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVG 420
             SFCMALT LGS VAFQAMVSIATIGLYIAYA+PI  RVTLAR +F+PGPF+LG+YG+VVG
Sbjct:   395 SFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVTLARNTFVPGPFSLGKYGMVVG 454

Query:   421 WIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITNI 480
             W+AVLWV TISVLFSLPVAYPIT++TLNYTPVAV GL+ +T+S W+FSARHWF GPI+NI
Sbjct:   455 WVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVAITLSYWLFSARHWFTGPISNI 514

Query:   481 AS 482
              S
Sbjct:   515 LS 516
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IDA
GO:0015180 "L-alanine transmembrane transporter activity" evidence=IDA
GO:0015181 "arginine transmembrane transporter activity" evidence=IDA
GO:0015189 "L-lysine transmembrane transporter activity" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IMP
GO:0015812 "gamma-aminobutyric acid transport" evidence=IMP
ASPGD|ASPL0000060974 AN1061 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBC15C4.04c SPBC15C4.04c "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007717 AN5968 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPCC74.04 SPCC74.04 "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000046410 AN8990 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPCC584.13 SPCC584.13 "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4NFY0 MGG_08670 "Choline transporter" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000065674 AN7392 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC1039.01 SPAC1039.01 "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O60113YG64_SCHPONo assigned EC number0.33190.96050.8542yesno
Q9ZU50BAT1_ARATHNo assigned EC number0.80701.00.9341yesno
B9EXZ6BAT1_ORYSJNo assigned EC number0.81250.99580.9230yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 0.0
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 9e-42
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 9e-33
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 7e-26
pfam00324473 pfam00324, AA_permease, Amino acid permease 2e-19
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 1e-10
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 1e-09
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 1e-06
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 9e-05
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 0.001
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information 
 Score =  522 bits (1347), Expect = 0.0
 Identities = 208/478 (43%), Positives = 298/478 (62%), Gaps = 13/478 (2%)

Query: 1   MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYP 60
           + S F F+FSI +  TGI+T YN GL+ GG +S+V+GW+IAGA ++ +  S+AE+ S+YP
Sbjct: 16  LWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYP 75

Query: 61  TSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKN 120
           TSGG Y+WSAKLA P+  PFASWMTGWFN+ GQ A T S D S+AQ+I  I+ L+T G+ 
Sbjct: 76  TSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGRE 135

Query: 121 GGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVG-VMVLMILIPSVS 179
              Y  +++ +     GI L+HA+INSLP   L      AA W+L+G + + + L+   S
Sbjct: 136 ---YIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKS 192

Query: 180 TERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239
            +    KFVFT+FN+  G G     + F+LGLL   +++TGYD +AHM EE +N +  GP
Sbjct: 193 PKFNDGKFVFTNFNNSTG-GWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGP 251

Query: 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVG 299
           + II A+ I I+ G+ + + + F++  I +L+S      G  IA+IFY A  N+     G
Sbjct: 252 RAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTT---GQPIAQIFYNALGNK----AG 304

Query: 300 GIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSA 358
            I  L ++ V  FFC ++ +T+NSRM YAFSRDG +PFS  W  VN +  +P+NAVWLSA
Sbjct: 305 AIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSA 364

Query: 359 FISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIV 418
                + L  LGS+ AFQA+ S+ T+ L ++Y +PI  ++   R +  PGPF LG+YG  
Sbjct: 365 VWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGRNTIAPGPFWLGKYGFF 424

Query: 419 VGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGP 476
           V  +AV W    SVLFS P   P+T + +NY  V   G+L +++  W +  R  F GP
Sbjct: 425 VNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP 482

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 482
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK10836489 lysine transporter; Provisional 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.96
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.95
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.88
PHA02764399 hypothetical protein; Provisional 99.86
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.83
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.83
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.78
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.76
TIGR00814397 stp serine transporter. The HAAAP family includes 99.71
PRK10483414 tryptophan permease; Provisional 99.69
PRK15132403 tyrosine transporter TyrP; Provisional 99.68
PRK09664415 tryptophan permease TnaB; Provisional 99.64
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.49
PRK13629443 threonine/serine transporter TdcC; Provisional 99.45
PF03845320 Spore_permease: Spore germination protein; InterPr 99.2
KOG1303437 consensus Amino acid transporters [Amino acid tran 98.76
PTZ00206467 amino acid transporter; Provisional 98.67
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.67
COG3949349 Uncharacterized membrane protein [Function unknown 98.61
PLN03074473 auxin influx permease; Provisional 98.59
PRK11375484 allantoin permease; Provisional 98.54
KOG1304449 consensus Amino acid transporters [Amino acid tran 98.43
COG1457442 CodB Purine-cytosine permease and related proteins 98.42
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.32
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.17
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.16
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 98.06
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.99
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.91
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.87
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.79
TIGR00813407 sss transporter, SSS family. have different number 97.74
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.72
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.72
PRK11017404 codB cytosine permease; Provisional 97.66
PRK00701439 manganese transport protein MntH; Reviewed 97.57
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.45
KOG1305411 consensus Amino acid transporter protein [Amino ac 97.4
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.35
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.28
PRK12488549 acetate permease; Provisional 97.22
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.19
PRK09395551 actP acetate permease; Provisional 97.01
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 96.98
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 96.95
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.9
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.87
PRK09950506 putative transporter; Provisional 96.82
PRK15433439 branched-chain amino acid transport system 2 carri 96.7
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 96.66
PRK15419502 proline:sodium symporter PutP; Provisional 96.36
COG4147529 DhlC Predicted symporter [General function predict 96.32
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 96.22
PRK10484523 putative transporter; Provisional 96.22
TIGR00842453 bcct choline/carnitine/betaine transport. properti 95.96
PRK09928679 choline transport protein BetT; Provisional 95.85
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 95.63
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 95.48
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.4
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 95.18
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 94.61
PRK10745 622 trkD potassium transport protein Kup; Provisional 93.9
PLN00151 852 potassium transporter; Provisional 93.8
PLN00148 785 potassium transporter; Provisional 93.75
PLN00149 779 potassium transporter; Provisional 93.54
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 93.45
PLN00150 779 potassium ion transporter family protein; Provisio 93.1
PF1390651 AA_permease_C: C-terminus of AA_permease 91.04
COG1292537 BetT Choline-glycine betaine transporter [Cell env 88.28
PRK15238496 inner membrane transporter YjeM; Provisional 87.98
KOG3659629 consensus Sodium-neurotransmitter symporter [Signa 85.01
PF06570206 DUF1129: Protein of unknown function (DUF1129); In 82.97
COG4858226 Uncharacterized membrane-bound protein conserved i 80.59
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information 
Probab=100.00  E-value=1.3e-58  Score=475.12  Aligned_cols=464  Identities=44%  Similarity=0.814  Sum_probs=386.6

Q ss_pred             CchhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598            1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF   80 (482)
Q Consensus         1 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~   80 (482)
                      .++.++++++.+.+++|++...+..++.+||.+.+++|+++++++++.+++++||++++|++||.|+|++|.++|++|+.
T Consensus        16 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~   95 (482)
T TIGR00907        16 LWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPF   95 (482)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccc
Confidence            36889999999999999999999999999997689999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011598           81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGG-GYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQL  159 (482)
Q Consensus        81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~  159 (482)
                      .+|+++|.+++.+....+..+...++++...+...    .+. .+..+++....+..+++++...+|++|+|..++++++
T Consensus        96 ~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~  171 (482)
T TIGR00907        96 ASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT----TPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSS  171 (482)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence            99999999999998888888888888887766441    111 1334556667777788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccc-ccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598          160 AAAWNLVGVMVLMILIPSVST-ERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG  238 (482)
Q Consensus       160 ~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i  238 (482)
                      ..+++++.++++.+..+...+ +.++.++.++++.++ ..++.+++.++..++....|+|.|+|.+++++||+||||||+
T Consensus       172 ~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~i  250 (482)
T TIGR00907       172 AAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNS-TGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVG  250 (482)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCC-CCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhc
Confidence            999998887766555444332 122233344555442 124555556678888889999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598          239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS  318 (482)
Q Consensus       239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  318 (482)
                      |||+..++.+..+++++..+......+|.+++.+.+.   ++|+.+.+.+.++.    ++...++.+.++++.+++.++.
T Consensus       251 P~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~  323 (482)
T TIGR00907       251 PRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTT---GQPIAQIFYNALGN----KAGAIFLLCLILVTSFFCAITC  323 (482)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCC---CChHHHHHHHHhCC----chHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988777666666555555534555544321   25777776666544    2366678888999999999999


Q ss_pred             hhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598          319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFR  397 (482)
Q Consensus       319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  397 (482)
                      +++.+|++++++|||.+|++|+|+|+||| |+|+++++++.+++.++.+....+++.++.+.+..+...++.|.+++.+.
T Consensus       324 ~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~  403 (482)
T TIGR00907       324 MTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICK  403 (482)
T ss_pred             HHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 99999999999999887665556678899999999999999999999988


Q ss_pred             HHhccccCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccccccc
Q 011598          398 VTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGP  476 (482)
Q Consensus       398 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  476 (482)
                      +++||+++++||||.+++.+++++++++++.+..+..++|+..|.+..+++|..+.++...+++.++|..++||++++|
T Consensus       404 l~~~~~~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r~~~~gp  482 (482)
T TIGR00907       404 LAKGRNTIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP  482 (482)
T ss_pred             HHhcCCCCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEeceeeccCc
Confidence            8877765678899997688999999999999999999999988888999999999999999999999999999998875

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues Back     alignment and domain information
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 4e-22
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 1e-18
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-14
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score = 98.4 bits (245), Expect = 4e-22
 Identities = 69/477 (14%), Positives = 156/477 (32%), Gaps = 38/477 (7%)

Query: 5   FAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTS-G 63
           FA + S++  +    T   +G        + +  L    + + VG   AE+ +      G
Sbjct: 19  FAITASMVMAVYEYPTFATSG-----FSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEG 73

Query: 64  GLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGG 123
           G++ W +   GP+W   A    G+  I                M+  ++   +       
Sbjct: 74  GVFAWVSNTLGPRWGFAAISF-GYLQIA----------IGFIPMLYFVLGALSYILKWPA 122

Query: 124 YEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERA 183
                         IL   A+         +   ++     ++    ++I + ++     
Sbjct: 123 LNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSG 182

Query: 184 SAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGII 243
           +   +     +   D       +  +  ++S     G +ASA    E  N  R+ P  ++
Sbjct: 183 APVAIEMDSKTFFPDFSKVGTLVVFVAFILS---YMGVEASATHVNEMSNPGRDYPLAML 239

Query: 244 SAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVC 303
             +  +I       +G       IP   +E N + G        ++           ++ 
Sbjct: 240 LLMVAAICL---SSVGGLSIAMVIPG--NEINLSAGVMQTFTVLMSHVAPEIEWTVRVIS 294

Query: 304 LGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFC 363
              + + +     S +   SR  Y  ++   +P  + + ++N   +P+  V     I+  
Sbjct: 295 AL-LLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMNKNGVPVTLVISQLVITSI 351

Query: 364 MALTYL----GSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSF--IPGPFNLGRY-- 415
             +       G+ ++F   +++  +    AY + +F    +       +   FN+     
Sbjct: 352 ALIILTNTGGGNNMSFLIALALTVVIYLCAYFM-LFIGYIVLVLKHPDLKRTFNIPGGKG 410

Query: 416 -GIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARH 471
             +VV  + +L      ++  LP        T  Y  + V   L++    +I  A H
Sbjct: 411 VKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVH 467
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.57
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 98.24
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.91
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 97.52
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 95.32
4ain_A539 Glycine betaine transporter BETP; membrane protein 92.13
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=4e-49  Score=401.03  Aligned_cols=425  Identities=15%  Similarity=0.175  Sum_probs=332.8

Q ss_pred             chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598            2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA   81 (482)
Q Consensus         2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~   81 (482)
                      ++++++.++.+ ..+|+|..++. +..+||. .+++|+++++.+++.+++|+|+++++|++||.|.|++|.    +||.+
T Consensus        13 ~~~~~l~ig~~-iG~Gif~~~~~-~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~----~G~~~   85 (445)
T 3l1l_A           13 IPVTLMVSGAI-MGSGVFLLPAN-LASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC----FGPFL   85 (445)
T ss_dssp             HHHHHHHHHHH-CSSHHHHHHHH-HHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH----SCHHH
T ss_pred             HHHHHHHHHhH-HhhhHHhhHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH----cCChH
Confidence            56778888766 46889998877 4457885 889999999999999999999999999999999999999    99999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598           82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA  161 (482)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~  161 (482)
                      |+..+|.+++.+....+..+....+++...++.          ..++++..+++++++++...+|++|+|..+|++.+.+
T Consensus        86 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------LKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----------GGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----------ccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            999999999998877777777777766543221          1234667788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchH
Q 011598          162 AWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKG  241 (482)
Q Consensus       162 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~a  241 (482)
                      ..|++.++++++.++...+.++.    .+++.+   ++.. +..++..++...+|+|.|+|..++++||+|||+|++||+
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~~~----~~~~~~---~~~~-~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a  227 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGETY----MAAWNV---SGLG-TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA  227 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCC----CCC---------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhc----ccccCc---cCCc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHH
Confidence            99999988888777654432111    112212   1111 234588899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598          242 IISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS  321 (482)
Q Consensus       242 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (482)
                      +..+...+.++|++..+...... +++++.+.+     .|..+.+.+..++     +...++.+..+++.+++.++.+++
T Consensus       228 ~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~-----~p~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~  296 (445)
T 3l1l_A          228 TIGGVLIAAVCYVLSTTAIMGMI-PNAALRVSA-----SPFGDAARMALGD-----TAGAIVSFCAAAGCLGSLGGWTLL  296 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-CTTTSCSTT-----CTHHHHHHHHHCT-----THHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CHHHHhccC-----cHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888 555554333     6776666655544     378889999999999999999999


Q ss_pred             hhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598          322 NSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGS--AVAFQAMVSIATIGLYIAYALPIFFRVT  399 (482)
Q Consensus       322 ~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~  399 (482)
                      .+|++++++|||.+|  |+|+|+||+++|+++++++.+++.++.+....+  .+.++.+.++.+....+.|.+.+++.++
T Consensus       297 ~sR~~~~~a~dg~lP--~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~  374 (445)
T 3l1l_A          297 AGQTAKAAADDGLFP--PIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLL  374 (445)
T ss_dssp             HHHHHHHHHHTTSSC--GGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCc--HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999  999999988999999999999888766544333  3568999999999999999999999999


Q ss_pred             hccccCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccccccccCC
Q 011598          400 LARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITN  479 (482)
Q Consensus       400 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  479 (482)
                      +|||+.  + .|.| ..+.++.++.+.+++..+...           .. ......++.+++..+|..++||++++++.+
T Consensus       375 ~r~~~~--~-~r~~-~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~  438 (445)
T 3l1l_A          375 LGHGHF--G-KARP-AYLAVTTIAFLYCIWAVVGSG-----------AK-EVMWSFVTLMVITAMYALNYNRLHKNPYPL  438 (445)
T ss_dssp             HHSSSS--G-GGCT-TTHHHHHHHHHHHHHHHHHSC-----------HH-HHHHHHHHHHHHHHHHHHHHSTTCCCSSCC
T ss_pred             HhhcCc--c-cccc-hhHHHHHHHHHHHHHHHHHcC-----------HH-HHHHHHHHHHHHHHHHHHHhhhcccCcccc
Confidence            987653  2 2444 677888888887777654321           11 233344555556666656555555544444


Q ss_pred             C
Q 011598          480 I  480 (482)
Q Consensus       480 ~  480 (482)
                      .
T Consensus       439 ~  439 (445)
T 3l1l_A          439 D  439 (445)
T ss_dssp             C
T ss_pred             c
Confidence            3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.95
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.95  E-value=0.0053  Score=59.92  Aligned_cols=40  Identities=15%  Similarity=0.191  Sum_probs=28.2

Q ss_pred             hhHHHhhHhHhHhh-hcccccchhhhhccccccccchHHHHH
Q 011598          205 YIFVLGLLMSQYTL-TGYDASAHMTEETKNADRNGPKGIISA  245 (482)
Q Consensus       205 ~~~~~~~~~~~~a~-~G~e~~~~~~~E~k~P~k~ip~ai~~~  245 (482)
                      .-+..+...++|++ .|+-....+++-.|+ +.|+.|-....
T Consensus       238 ~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v  278 (509)
T d2a65a1         238 GVWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTA  278 (509)
T ss_dssp             HHHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEE
Confidence            34777888888888 677777788877765 55666644443