Citrus Sinensis ID: 011600

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
MGSLKFILSAYLLSLSLCYAFEERVAAESQHELQHMHTIQLSSLLPSSVCNPSTKGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
cccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEEEEEEEccccccccEEEEEEcccccccccccEEEEccccccHHHHHHcccccccEEEEccccccccEEEEEccccccccEEccccccccccccccEEEcEEEEccEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccEEEEEccccc
cccHHHHHHHHHHHHHHHHHHHHcccHHHcccccccEEEEEccccccccccccccccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEcccccEEEEcccccHHHHccccccccccccccccccccccHHHHHccccccccccccccccEEEEEEccccccEEEEEEEEEEEccccEcccEEEEccccccccccccccEEEccccccEEHHccccccccEEEEEEccccccccEEEEcccccccccEccEEcccccccEEEEEEEEEEEccEEEEccccHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHccccccccccccccEEEcccccEEEccEEEEEEEccEEEEcccccEEEEccccEEEEEEEcccccccEEEEEEEEEccEEEEEEccccEEEEcccccc
MGSLKFILSAYLLSLSLCYAFEERVAAESQHELQHMHTiqlssllpssvcnpstkgnakksSLKVVhkhgpcfkpysngekaaspspsvshaeILRQDQSRVKSIHSrlsknsgsldeirqsddatlpakdgsvvgagNYIVTVgigtpkkdlSLIFdtgsdltwtqcepcvkycyeqkepkfdptvsqsysnvscsSTICTSlqsatgnspacasstclygiqygdssfsigffgketltltprdvfpnflfgcgqnnrglfggaaglmglgrdpisLVSQTATKYKKLFSyclpssasstghltfgpgasksvqftplssisggssfyGLEMIGISVGGQKLSIAASVFttagtiidsgtvitrlppdaytpLRTAFRQFMskyptapalslldtcydfskystvtlpqislffsggvevsvdkTGIMYASNISQVCLafagnsdptdvsifgntqqHTLEVVYDVAGGKVGFAAGGCS
MGSLKFILSAYLLSLSLCYAFEERVAAESQHELQHMHTIQLSSLLPSSVCNPSTKGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHsrlsknsgsldeirqsddatlpakdgsvvgaGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGtiidsgtvitrlppdAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
MGSLKFIlsayllslslcyaFEERVAAESQHELQHMHTIQLSSLLPSSVCNPSTKGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVsqsysnvscssTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRglfggaaglmglgRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDvaggkvgfaaggCS
***LKFILSAYLLSLSLCYAFEERVAA*********************************************************************************************************SVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKE**********YSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPS*******************FTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA****
****KFILSAYLLSLSLCYAFEERVA***QHELQHMHTIQLSSL*********************VHKHG*********************AEILRQDQSRV*****************************GSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKE*KF****SQ*YSNVSCSSTICTSLQS*******CASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQ**********LSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
MGSLKFILSAYLLSLSLCYAFEERVAAESQHELQHMHTIQLSSLLPSSVCNPS************VHKHGPCFKPYSN**************EILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTS***********ASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
*GSLKFILSAYLLSLSLCYAFEERVAAE*QHELQHMHTIQLSSLLP*************KSSLKVVHKHGPCFKPYSN**KAASPSPSVSHAEILRQDQSRVKSIHSRLSKN************ATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSLKFILSAYLLSLSLCYAFEERVAAESQHELQHMHTIQLSSLLPSSVCNPSTKGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query481 2.2.26 [Sep-21-2011]
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.790 0.808 0.373 2e-57
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.771 0.742 0.351 8e-56
Q766C2438 Aspartic proteinase nepen N/A no 0.748 0.821 0.370 6e-55
Q766C3437 Aspartic proteinase nepen N/A no 0.860 0.947 0.316 7e-51
Q6XBF8437 Aspartic proteinase CDR1 no no 0.696 0.766 0.362 5e-44
Q3EBM5447 Probable aspartic proteas no no 0.831 0.894 0.287 4e-32
Q9S9K4475 Aspartic proteinase-like no no 0.704 0.713 0.269 4e-27
Q9LZL3453 Aspartic proteinase PCS1 no no 0.665 0.706 0.292 8e-23
Q0IU52410 Aspartic proteinase Asp1 no no 0.380 0.446 0.320 1e-13
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.382 0.448 0.301 4e-13
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function desciption
 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 217/399 (54%), Gaps = 19/399 (4%)

Query: 91  HAEILRQDQSRVKSIHSRLS-KNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTP 149
           HA  +R+D  RV +I  R+S K   S D   + +D       G   G+G Y V +G+G+P
Sbjct: 82  HAR-MRRDTDRVSAILRRISGKVIPSSDSRYEVNDFGSDIVSGMDQGSGEYFVRIGVGSP 140

Query: 150 KKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATG 209
            +D  ++ D+GSD+ W QC+PC K CY+Q +P FDP  S SY+ VSC S++C  ++++  
Sbjct: 141 PRDQYMVIDSGSDMVWVQCQPC-KLCYKQSDPVFDPAKSGSYTGVSCGSSVCDRIENS-- 197

Query: 210 NSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGL 269
               C S  C Y + YGD S++ G    ETLT   + V  N   GCG  NRG+F GAAGL
Sbjct: 198 ---GCHSGGCRYEVMYGDGSYTKGTLALETLTFA-KTVVRNVAMGCGHRNRGMFIGAAGL 253

Query: 270 MGLGRDPISLVSQTATKYKKLFSYCLPSSAS-STGHLTFGPGA-SKSVQFTPLSSISGGS 327
           +G+G   +S V Q + +    F YCL S  + STG L FG  A      + PL       
Sbjct: 254 LGIGGGSMSFVGQLSGQTGGAFGYCLVSRGTDSTGSLVFGREALPVGASWVPLVRNPRAP 313

Query: 328 SFYGLEMIGISVGGQKLSIAASVFT-----TAGTIIDSGTVITRLPPDAYTPLRTAFRQF 382
           SFY + + G+ VGG ++ +   VF        G ++D+GT +TRLP  AY   R  F+  
Sbjct: 314 SFYYVGLKGLGVGGVRIPLPDGVFDLTETGDGGVVMDTGTAVTRLPTAAYVAFRDGFKSQ 373

Query: 383 MSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVD-KTGIMYASNISQVCLA 441
            +  P A  +S+ DTCYD S + +V +P +S +F+ G  +++  +  +M   +    C A
Sbjct: 374 TANLPRASGVSIFDTCYDLSGFVSVRVPTVSFYFTEGPVLTLPARNFLMPVDDSGTYCFA 433

Query: 442 FAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 480
           FA +  PT +SI GN QQ  ++V +D A G VGF    C
Sbjct: 434 FAAS--PTGLSIIGNIQQEGIQVSFDGANGFVGFGPNVC 470
Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
255548664494 Aspartic proteinase nepenthesin-2 precur 0.968 0.943 0.667 1e-168
225430555481 PREDICTED: aspartic proteinase nepenthes 0.972 0.972 0.617 1e-167
224142001490 predicted protein [Populus trichocarpa] 0.941 0.924 0.685 1e-165
225430551490 PREDICTED: aspartic proteinase nepenthes 0.975 0.957 0.607 1e-162
24430421502 41 kD chloroplast nucleoid DNA binding p 0.962 0.922 0.572 1e-154
297811185475 hypothetical protein ARALYDRAFT_325615 [ 0.960 0.972 0.598 1e-154
356567196490 PREDICTED: aspartic proteinase nepenthes 0.945 0.928 0.596 1e-153
356527089488 PREDICTED: aspartic proteinase nepenthes 0.966 0.952 0.584 1e-153
8979711446 nucleoid DNA-binding protein cnd41-like 0.914 0.986 0.594 1e-152
22326716474 aspartyl protease family protein [Arabid 0.873 0.886 0.626 1e-152
>gi|255548664|ref|XP_002515388.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223545332|gb|EEF46837.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 321/481 (66%), Positives = 381/481 (79%), Gaps = 15/481 (3%)

Query: 4   LKFILSAYLL-SLSLCYAFEERVAAESQHELQHMHTIQLSSLLPSSVCNPSTK--GNAKK 60
           +K  LS +LL S + CYAFE R  AESQH      TI L+SLLP++ C PST+      K
Sbjct: 26  IKHFLSLWLLFSFNNCYAFEGRKFAESQHT---HTTIHLTSLLPAASCKPSTQVPSIENK 82

Query: 61  SSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIR 120
           + LKVVHKHGPC      G KA +         IL QDQSRV SIHS+LSK+SG L +++
Sbjct: 83  AFLKVVHKHGPC-SDLRQGHKAEA-------QYILLQDQSRVDSIHSKLSKDSG-LSDVK 133

Query: 121 QSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKE 180
            +   TLPAKDGS++G+GNY VTVG+GTPKKD SLIFDTGSDLTWTQCEPCVK CY QKE
Sbjct: 134 ATAATTLPAKDGSIIGSGNYFVTVGLGTPKKDFSLIFDTGSDLTWTQCEPCVKSCYNQKE 193

Query: 181 PKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETL 240
             F+P+ S SY+N+SC ST+C SL SATGN   CASSTC+YGIQYGDSSFSIGFFGKE L
Sbjct: 194 AIFNPSQSTSYANISCGSTLCDSLASATGNIFNCASSTCVYGIQYGDSSFSIGFFGKEKL 253

Query: 241 TLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSAS 300
           +LT  DVF +F FGCGQNN+GLFGGAAGL+GLGRD +SLVSQTA +Y K+FSYCLPSS+S
Sbjct: 254 SLTATDVFNDFYFGCGQNNKGLFGGAAGLLGLGRDKLSLVSQTAQRYNKIFSYCLPSSSS 313

Query: 301 STGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDS 360
           STG LTFG   SKS  FTPL++ISGGSSFYGL++ GISVGG+KL+I+ SVF+TAGTIIDS
Sbjct: 314 STGFLTFGGSTSKSASFTPLATISGGSSFYGLDLTGISVGGRKLAISPSVFSTAGTIIDS 373

Query: 361 GTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGV 420
           GTVITRLPP AY+ L + FR+ MS+YP APALS+LDTC+DFS + T+++P+I LFFSGGV
Sbjct: 374 GTVITRLPPAAYSALSSTFRKLMSQYPAAPALSILDTCFDFSNHDTISVPKIGLFFSGGV 433

Query: 421 EVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 480
            V +DKTGI Y ++++QVCLAFAGNSD +DV+IFGN QQ TLEVVYD A G+VGFA  GC
Sbjct: 434 VVDIDKTGIFYVNDLTQVCLAFAGNSDASDVAIFGNVQQKTLEVVYDGAAGRVGFAPAGC 493

Query: 481 S 481
           S
Sbjct: 494 S 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142001|ref|XP_002324349.1| predicted protein [Populus trichocarpa] gi|222865783|gb|EEF02914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|24430421|dbj|BAC22609.1| 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356567196|ref|XP_003551807.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356527089|ref|XP_003532146.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.910 0.924 0.569 4.4e-132
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.885 0.918 0.492 5.1e-106
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.839 0.834 0.366 3.7e-64
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.889 0.886 0.345 2.9e-55
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.814 0.808 0.335 1.1e-53
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.762 0.780 0.334 6.3e-53
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.696 0.67 0.338 1.2e-49
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.777 0.774 0.322 2.3e-48
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.725 0.798 0.324 7.5e-41
TAIR|locus:2024306449 AT1G09750 [Arabidopsis thalian 0.692 0.741 0.321 2.9e-39
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 255/448 (56%), Positives = 312/448 (69%)

Query:    37 HTIQLSSLLPSSV--CNPSTKGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEI 94
             HTIQ+SSLLPSS   C  S + +  KSSL V H+HG C +  +NG KA SP     H EI
Sbjct:    34 HTIQVSSLLPSSSSSCVLSPRASTTKSSLHVTHRHGTCSR-LNNG-KATSPD----HVEI 87

Query:    95 LRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLS 154
             LR DQ+RV SIHS+LSK   + D + +S    LPAKDGS +G+GNYIVTVG+GTPK DLS
Sbjct:    88 LRLDQARVNSIHSKLSKKLAT-DHVSESKSTDLPAKDGSTLGSGNYIVTVGLGTPKNDLS 146

Query:   155 LIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVXXXXXXXXXXXTICTSLQSATGNSPAC 214
             LIFDTGSDLTWTQC+PCV+ CY+QKEP F+P+              C SL SATGN+ +C
Sbjct:   147 LIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKSTSYYNVSCSSAACGSLSSATGNAGSC 206

Query:   215 ASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRXXXXXXXXXXXXXR 274
             ++S C+YGIQYGD SFS+GF  KE  TLT  DVF    FGCG+NN+             R
Sbjct:   207 SASNCIYGIQYGDQSFSVGFLAKEKFTLTNSDVFDGVYFGCGENNQGLFTGVAGLLGLGR 266

Query:   275 DPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGP-GASKSVQFTPLSSISGGSSFYGLE 333
             D +S  SQTAT Y K+FSYCLPSSAS TGHLTFG  G S+SV+FTP+S+I+ G+SFYGL 
Sbjct:   267 DKLSFPSQTATAYNKIFSYCLPSSASYTGHLTFGSAGISRSVKFTPISTITDGTSFYGLN 326

Query:   334 MIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALS 393
             ++ I+VGGQKL I ++VF+T G +IDSGTVITRLPP AY  LR++F+  MSKYPT   +S
Sbjct:   327 IVAITVGGQKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVS 386

Query:   394 LLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSI 453
             +LDTC+D S + TVT+P+++  FSGG  V +   GI Y   ISQVCLAFAGNSD ++ +I
Sbjct:   387 ILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAI 446

Query:   454 FGNTQQHTLEVVYDXXXXXXXXXXXXCS 481
             FGN QQ TLEVVYD            CS
Sbjct:   447 FGNVQQQTLEVVYDGAGGRVGFAPNGCS 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024306 AT1G09750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.766
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-144
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-70
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-63
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 1e-42
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-25
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 3e-23
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 2e-18
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-16
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-12
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 1e-10
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 1e-10
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 1e-09
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 4e-07
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 6e-06
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 6e-06
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 2e-05
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 2e-05
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 3e-05
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 9e-04
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  414 bits (1066), Expect = e-144
 Identities = 169/346 (48%), Positives = 211/346 (60%), Gaps = 51/346 (14%)

Query: 139 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSS 198
            Y+VTVG+GTP +D ++I DTGSDLTW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 199 TICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQN 258
                               CLY + YGD S++ G    +TLTL   DV P F FGCG +
Sbjct: 34  --------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHD 73

Query: 259 NRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSAS-STGHLTFGPGASK--SV 315
           N GLFGGAAGL+GLGR  +SL SQTA+ Y  +FSYCLP  +S S+G+L+FG  AS     
Sbjct: 74  NEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASVPAGA 133

Query: 316 QFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375
            FTP+ S     +FY + + GISVGG++L I  + F   G IIDSGTVITRLPP AY  L
Sbjct: 134 SFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAAL 193

Query: 376 RTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYA-SN 434
           R AFR  M+ YP AP  S+LDTCYD S + +V++P +SL F GG +V +D +G++Y   +
Sbjct: 194 RDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD 253

Query: 435 ISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 480
            SQVCLAFAG SD   +SI GN QQ T  VVYDVAGG++GFA GGC
Sbjct: 254 SSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 481
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.68
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.43
PF1365090 Asp_protease_2: Aspartyl protease 94.95
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.56
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 88.94
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 88.43
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 83.57
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 82.96
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 81.04
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 80.53
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.2e-76  Score=614.37  Aligned_cols=394  Identities=35%  Similarity=0.642  Sum_probs=329.5

Q ss_pred             CCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHhhhccCCCCCcccccCCceeeccccCCccC
Q 011600           57 NAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVG  136 (481)
Q Consensus        57 ~~~~~~l~l~hr~~p~~sp~~~~~~~~~~~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~  136 (481)
                      ++++++++|+||++|| ||++.+...+.+    .++++++|+++|+++|.++...              ..|+..+...+
T Consensus        21 ~~~~~~~~l~h~~~~~-sp~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~--------------~~~~~~~~~~~   81 (431)
T PLN03146         21 PKGGFTVDLIHRDSPK-SPFYNPSETPSQ----RLRNAFRRSISRVNHFRPTDAS--------------PNDPQSDLISN   81 (431)
T ss_pred             cCCceEEEEEeCCCCC-CCCCCCCCChhH----HHHHHHHHHHHHHHHHhhcccc--------------CCccccCcccC
Confidence            4477999999999999 998764444444    7888999999999888654211              12333343456


Q ss_pred             ceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCC
Q 011600          137 AGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACAS  216 (481)
Q Consensus       137 ~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~  216 (481)
                      +++|+++|.||||||++.|++||||+++||||.+|. .|+.|..+.|||++|+||+.++|+++.|..+..    ...|..
T Consensus        82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~-~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~  156 (431)
T PLN03146         82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD-DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSD  156 (431)
T ss_pred             CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc-ccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCC
Confidence            789999999999999999999999999999999996 599988899999999999999999999987653    234753


Q ss_pred             -CCceeeEEcCCCCeEEEEEEEEEEEeCCC----cccCceEEEEEEecCCCCC-CcceeeecCCCCCchhhhhhhhcCCc
Q 011600          217 -STCLYGIQYGDSSFSIGFFGKETLTLTPR----DVFPNFLFGCGQNNRGLFG-GAAGLMGLGRDPISLVSQTATKYKKL  290 (481)
Q Consensus       217 -~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~----~~~~~~~FGc~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~~~~~  290 (481)
                       +.|.|.+.|+||+.+.|++++|+|+|++.    ..++++.|||++++.+.|. ..+||||||++++|+++|+...++++
T Consensus       157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~  236 (431)
T PLN03146        157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGK  236 (431)
T ss_pred             CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCc
Confidence             56999999999998899999999999873    2588999999999888664 58999999999999999998766779


Q ss_pred             eEEeccCCC---CCCceEEeCCCC---CCCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccc---cCCeEEecc
Q 011600          291 FSYCLPSSA---SSTGHLTFGPGA---SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT---TAGTIIDSG  361 (481)
Q Consensus       291 FS~cL~~~~---~~~G~L~fGg~d---~~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~---~~~~iiDSG  361 (481)
                      |||||++..   ...|+|+||+..   ...+.||||+.+.. +.+|+|+|++|+||+++++++...|.   .+++|||||
T Consensus       237 FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSG  315 (431)
T PLN03146        237 FSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSG  315 (431)
T ss_pred             EEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCC
Confidence            999997632   247999999953   23589999986432 67999999999999999998877652   257999999


Q ss_pred             CceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCceEEE
Q 011600          362 TVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLA  441 (481)
Q Consensus       362 T~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~Cla  441 (481)
                      |++|+||+++|++|+++|.+++...+.......++.||+...  ...+|+|+|+| +|+++.|++++|+++...+.+|++
T Consensus       316 Tt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~  392 (431)
T PLN03146        316 TTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFA  392 (431)
T ss_pred             ccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEE
Confidence            999999999999999999999865443344445789998543  25789999999 589999999999998766789999


Q ss_pred             EEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeCCCC
Q 011600          442 FAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS  481 (481)
Q Consensus       442 ~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~  481 (481)
                      +.+.   .+.+|||+.|||++||+||++++||||++++|+
T Consensus       393 ~~~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        393 MIPT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             EecC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            8865   236999999999999999999999999999995

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 2e-05
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 2e-04
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 3e-04
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 8e-04
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 8e-04
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 27/216 (12%)
Query: 277 ISLVSQTAT--KYKKLFSYCLPSSASSTGHLTFGPGA----SKSVQFTPLSSISGGSSFY 330
           ++L +Q A+  K    F  CLP+          GP      ++S+ +TPL +  GGS  +
Sbjct: 148 LALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVT-KGGSPAH 206
Query: 331 GLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAF-----RQFMSK 385
            +    I VG  ++ +      T G ++ +      L PD Y PL  AF      Q  + 
Sbjct: 207 YISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANG 266
Query: 386 YPTAPALSLL---DTCYDF----SKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQV 438
            P A A+  +     CYD     +      +P + L   GG + ++     M        
Sbjct: 267 APVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTA 326
Query: 439 CLAF-------AGNSDPTDVSIFGNTQQHTLEVVYD 467
           C+AF       AG+     V I G  Q     + +D
Sbjct: 327 CVAFVEMKGVAAGDGRAPAV-ILGGAQMEDFVLDFD 361
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 6e-91
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 6e-85
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 7e-77
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 6e-26
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 2e-24
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 9e-24
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 9e-24
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 2e-23
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-23
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 4e-23
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 6e-22
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 7e-22
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-21
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 1e-20
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-20
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 3e-20
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 4e-20
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 7e-20
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 9e-20
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-19
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-19
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-19
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 3e-19
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-18
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-18
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 5e-18
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 7e-18
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-17
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-16
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-16
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-15
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 2e-14
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 9e-08
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 1e-06
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  281 bits (720), Expect = 6e-91
 Identities = 76/376 (20%), Positives = 126/376 (33%), Gaps = 40/376 (10%)

Query: 138 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCS 197
           G +   +   TP   + ++ D   +  W  CE         + P    T     +   C 
Sbjct: 21  GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYS-SKTYQAPFCHSTQCSRANTHQCL 79

Query: 198 STICTSLQSATGNSPACASSTC-LYGIQYGDSSFSIGFFGKETLTL----------TPRD 246
           S    S        P C  +TC L           +G  G++ L +           P  
Sbjct: 80  SCPAAS-------RPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLV 132

Query: 247 VFPNFLFGCGQN---NRGLFGGAAGLMGLGRDPISLVSQTATKY--KKLFSYCLPSSASS 301
             P FLF C  +    +GL     G+ GLG  PISL +Q A+ +  ++ F+ CL    +S
Sbjct: 133 TVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTS 192

Query: 302 TGHLTFGPGASKSVQFTPLSSISG---------GSSFYGLEMIGISVGGQKLSIAASVF- 351
            G + FG   +   QF                     Y + +  I +    +     +  
Sbjct: 193 KGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISS 252

Query: 352 -----TTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYST 406
                T+ GT+I + T    L    Y      F Q + K     +++    C++ +K + 
Sbjct: 253 TIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINA 312

Query: 407 VTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFA-GNSDPTDVSIFGNTQQHTLEVV 465
                + +    G    +    +M  +     CL    G   P      G  Q     VV
Sbjct: 313 YPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVV 372

Query: 466 YDVAGGKVGFAAGGCS 481
           +D+A  +VGF+     
Sbjct: 373 FDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.62
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 89.81
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 89.03
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=7e-64  Score=520.53  Aligned_cols=342  Identities=24%  Similarity=0.428  Sum_probs=286.6

Q ss_pred             cCCceeeccccCCccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcc
Q 011600          121 QSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTI  200 (481)
Q Consensus       121 ~~~~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~  200 (481)
                      ..+.+.+|++.+  ..+++|+++|.||||||++.|++||||+++||+|++|              .+|+||+.++|.++.
T Consensus         5 ~~~~~~~pv~~d--~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c--------------~~Sst~~~v~C~s~~   68 (413)
T 3vla_A            5 RPSALVVPVKKD--ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN--------------YVSSTYRPVRCRTSQ   68 (413)
T ss_dssp             CCSEEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS--------------CCCTTCEECBTTSHH
T ss_pred             CCccEEEEeeec--CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC--------------CCCCCcCccCCCccc
Confidence            345678999865  4689999999999999999999999999999999875              279999999999999


Q ss_pred             cccccccCC------CCCCCCCCCceeeEEc-CCCCeEEEEEEEEEEEeCC--------CcccCceEEEEEEec--CCCC
Q 011600          201 CTSLQSATG------NSPACASSTCLYGIQY-GDSSFSIGFFGKETLTLTP--------RDVFPNFLFGCGQNN--RGLF  263 (481)
Q Consensus       201 C~~~~~~~~------~~~~C~~~~c~y~~~Y-gdgs~~~G~~~~Dtltl~~--------~~~~~~~~FGc~~~~--~g~~  263 (481)
                      |.....+..      ....|.++.|.|.+.| +|++.+.|++++|+|+|+.        ...++++.|||++.+  .+.+
T Consensus        69 C~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~  148 (413)
T 3vla_A           69 CSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLA  148 (413)
T ss_dssp             HHHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSC
T ss_pred             ccccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcc
Confidence            997654311      0135666779999999 5888899999999999973        146789999999986  4566


Q ss_pred             CCcceeeecCCCCCchhhhhhhhc--CCceEEeccCCCCCCceEEeCCCCC---------CC-ceEeecccCCCC-----
Q 011600          264 GGAAGLMGLGRDPISLVSQTATKY--KKLFSYCLPSSASSTGHLTFGPGAS---------KS-VQFTPLSSISGG-----  326 (481)
Q Consensus       264 ~~~~GilGLg~~~~Sl~sQ~~~~~--~~~FS~cL~~~~~~~G~L~fGg~d~---------~~-~~~tpl~~~~~~-----  326 (481)
                      ...+||||||++++|+++|+..+.  .++|||||++.....|+|+||+.+.         ++ +.||||+.++..     
T Consensus       149 ~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~  228 (413)
T 3vla_A          149 SGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATS  228 (413)
T ss_dssp             TTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSC
T ss_pred             cccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccc
Confidence            789999999999999999998764  4899999998655689999999763         45 999999986532     


Q ss_pred             -----CccEEEEEeEEEEccEEeeecccccc-----cCCeEEeccCceeecCHHHHHHHHHHHHHhhh--cCCCCCCCCc
Q 011600          327 -----SSFYGLEMIGISVGGQKLSIAASVFT-----TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMS--KYPTAPALSL  394 (481)
Q Consensus       327 -----~~~y~V~l~gIsVgg~~l~~~~~~f~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~--~~~~~~~~~~  394 (481)
                           ..+|+|+|++|+||++.+.+++..|.     .+++||||||++|+||+++|++|+++|.+++.  +++...+...
T Consensus       229 ~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~  308 (413)
T 3vla_A          229 TQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP  308 (413)
T ss_dssp             CTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTT
T ss_pred             cccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCC
Confidence                 27999999999999999998877663     26899999999999999999999999999876  3443334456


Q ss_pred             ccceeeccCCcc----cccCeEEEEEcC-CeEEEECCCCcEEEeCCCceEEEEEeCCCC-CCceeecHhhhceeEEEEEC
Q 011600          395 LDTCYDFSKYST----VTLPQISLFFSG-GVEVSVDKTGIMYASNISQVCLAFAGNSDP-TDVSIFGNTQQHTLEVVYDV  468 (481)
Q Consensus       395 ~~~Cy~~~~~~~----~~~P~i~f~f~g-g~~~~l~~~~~l~~~~~~~~Cla~~~~~~~-~~~~IlG~~fl~~~~vvfD~  468 (481)
                      ++.||+.++...    ..+|+|+|+|.| +++++|++++|+++...+..|++|+..+.. .+.||||++|||++|+|||+
T Consensus       309 ~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~  388 (413)
T 3vla_A          309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDL  388 (413)
T ss_dssp             CSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEET
T ss_pred             CcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEEC
Confidence            789999876532    479999999965 489999999999987667789998876322 35799999999999999999


Q ss_pred             CCCEEEEEeC
Q 011600          469 AGGKVGFAAG  478 (481)
Q Consensus       469 ~~~rIGFa~~  478 (481)
                      +++|||||++
T Consensus       389 ~~~riGfa~~  398 (413)
T 3vla_A          389 ATSRVGFSGT  398 (413)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999999985
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 481
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 6e-54
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-36
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-35
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-34
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 5e-34
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 7e-34
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-33
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-33
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 4e-33
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 8e-33
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 9e-31
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-30
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-30
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 3e-30
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 4e-30
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 6e-30
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-29
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-29
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 5e-29
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-28
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 3e-24
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 3e-23
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  183 bits (465), Expect = 6e-54
 Identities = 71/374 (18%), Positives = 118/374 (31%), Gaps = 52/374 (13%)

Query: 138 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQS--YSNVS 195
             Y +    G       L+ D    L W+ C+         + P   PT   +  Y    
Sbjct: 14  SLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG---QPPAEIPCSSPTCLLANAYPAPG 65

Query: 196 CSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTL-------TPRDVF 248
           C +  C         S         Y       + + G                    V 
Sbjct: 66  CPAPSC--------GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 249 PNFLFGCGQNN--RGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLT 306
              L  C  +     L  G+ G+ GL    ++L +Q A+  K    + L       G   
Sbjct: 118 VGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177

Query: 307 FGPGA------SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDS 360
           FG G       ++S+ +TPL +  GGS  + +    I VG  ++ +      T G ++ +
Sbjct: 178 FGGGPVPWPQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGALATGGVMLST 236

Query: 361 GTVITRLPPDAYTPLRTAFRQFMSKYP--------TAPALSLLDTCYDFSKY----STVT 408
                 L PD Y PL  AF + ++              A++    CYD            
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296

Query: 409 LPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFA------GNSDPTDVSIFGNTQQHTL 462
           +P + L   GG + ++     M        C+AF                I G  Q    
Sbjct: 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDF 356

Query: 463 EVVYDVAGGKVGFA 476
            + +D+   ++GF+
Sbjct: 357 VLDFDMEKKRLGFS 370
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.5e-55  Score=446.08  Aligned_cols=340  Identities=23%  Similarity=0.360  Sum_probs=264.9

Q ss_pred             CHHHHHHhhHHHHHHHHhhhccCCCCCcccccCCceeeccccCCccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCC
Q 011600           90 SHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCE  169 (481)
Q Consensus        90 ~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~  169 (481)
                      ++++.++++..+.++++.|...................|+.   ++.+.+|+++|.||||||++.|++||||+++||+|+
T Consensus        11 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~   87 (370)
T d3psga_          11 SLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLE---NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV   87 (370)
T ss_dssp             CHHHHHHHTTCHHHHHHHCCCCGGGGTCTTSCCSSCCCTTG---GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred             cHHHHHHHcCcHHHHHHhcccchhhhhcccccCcccccccc---cccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc
Confidence            57788888777777776553211100000112223345665   345689999999999999999999999999999999


Q ss_pred             CcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccC
Q 011600          170 PCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFP  249 (481)
Q Consensus       170 ~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~  249 (481)
                      +|.. |..+..+.|||++|+||+...                       |.|.+.|++|+ +.|.++.|++.+++ ..++
T Consensus        88 ~C~~-~~~~~~~~yd~~~Sst~~~~~-----------------------~~~~~~Yg~Gs-~~G~~~~d~~~~~~-~~~~  141 (370)
T d3psga_          88 YCSS-LACSDHNQFNPDDSSTFEATS-----------------------QELSITYGTGS-MTGILGYDTVQVGG-ISDT  141 (370)
T ss_dssp             TCCS-GGGTTSCCBCGGGCTTCEEEE-----------------------EEEEEESSSCE-EEEEEEEEEEEETT-EEEE
T ss_pred             cCCC-cccccccccCCCcccccccCC-----------------------CcEEEEeCCce-EEEEEEEEEEeeec-eeee
Confidence            9964 877788999999999999875                       79999999997 78999999999998 6899


Q ss_pred             ceEEEEEEecCCCC---CCcceeeecCCCCCc------hhhhhhhh---cCCceEEeccCCCCCCceEEeCCCCC----C
Q 011600          250 NFLFGCGQNNRGLF---GGAAGLMGLGRDPIS------LVSQTATK---YKKLFSYCLPSSASSTGHLTFGPGAS----K  313 (481)
Q Consensus       250 ~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------l~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~----~  313 (481)
                      ++.|||++...+.+   ...+||+|||+...+      +..++...   ..+.||+|+.+.....|.|+|||+|+    +
T Consensus       142 ~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~  221 (370)
T d3psga_         142 NQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTG  221 (370)
T ss_dssp             EEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSS
T ss_pred             eeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhccc
Confidence            99999999887633   367999999987654      33333332   26899999998766789999999874    6


Q ss_pred             CceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 011600          314 SVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALS  393 (481)
Q Consensus       314 ~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~  393 (481)
                      ++.|+|+..    ..+|.|.+++|.|+++.+.....    ..+||||||++++||+++|++|++++.+...    ..   
T Consensus       222 ~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~~~----~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~----~~---  286 (370)
T d3psga_         222 SLNWVPVSV----EGYWQITLDSITMDGETIACSGG----CQAIVDTGTSLLTGPTSAIANIQSDIGASEN----SD---  286 (370)
T ss_dssp             CCEEEECSE----ETTEEEEECEEESSSSEEECTTC----EEEEECTTCCSEEEEHHHHHHHHHHTTCEEC----TT---
T ss_pred             ceeEEeecc----cceEEEEEeeEEeCCeEEecCCC----ccEEEecCCceEeCCHHHHHHHHHHhCCeee----cC---
Confidence            899999977    67899999999999988765433    3599999999999999999999999876521    11   


Q ss_pred             cccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCceEE-EEEeCC---CCCCceeecHhhhceeEEEEECC
Q 011600          394 LLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVA  469 (481)
Q Consensus       394 ~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~Cl-a~~~~~---~~~~~~IlG~~fl~~~~vvfD~~  469 (481)
                         .+|.++|.....+|+|+|+| ||+++.|++++|+++.  +..|+ +|...+   ...+.||||++|||++|+|||++
T Consensus       287 ---~~~~~~C~~~~~~P~l~f~f-~g~~~~l~~~~yi~~~--~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~  360 (370)
T d3psga_         287 ---GEMVISCSSIDSLPDIVFTI-DGVQYPLSPSAYILQD--DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRA  360 (370)
T ss_dssp             ---CCEECCGGGGGGCCCEEEEE-TTEEEEECHHHHEEEC--SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETT
T ss_pred             ---CcEEEeccccCCCceEEEEE-CCEEEEEChHHeEEEc--CCeEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECC
Confidence               12334444456799999999 8999999999999876  34575 454321   23567999999999999999999


Q ss_pred             CCEEEEEeCC
Q 011600          470 GGKVGFAAGG  479 (481)
Q Consensus       470 ~~rIGFa~~~  479 (481)
                      ++||||||+.
T Consensus       361 ~~~IGfAp~a  370 (370)
T d3psga_         361 NNKVGLAPVA  370 (370)
T ss_dssp             TTEEEEEEBC
T ss_pred             CCEEEEEecC
Confidence            9999999974
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure