Citrus Sinensis ID: 011603

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQDLQPC
cccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHccccHHHHHHHHHHHcccEEcccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccccccccEEEEEEcccccHHHHHHHHHccEEEEEEccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccHHHHHHHccccccHHHccccccccccccccccccccccccccHcccccccHHHccccccHHcccccccccccHHccccccEEEEEEEccccHHHHHHcccccHHHHHHHHcccEEEEccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccEEEEEEcccccHHHHHHHHcccEEEEEEcccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHcccccHHcHcEEcccccccccccccccccc
mtedshhtfssddsaistdgssqtrqrkkrkwdqpaeslinfplasfgislpgvpvapvvpapaaaafftnppvasgatvppvvlqgplppkfnqpkvqDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVitrgkyrlpnappdgekplylHISAGAHLKETAERILAVDHAAAMVEEMLKqghagfptlqtvmgngvqaMSTSVFLGFDADASLNIAarirgpndqyINHIMNETGATVLLrgrgsgnseglqgeevhqplhlflssnnpkSLEEAKRLAENLLDTISaecgasrvssckvynavpppqqlltgiqgfgneqklnagsAVILTSTVnlssvplapsvpgvttVYSQGmmlqsggilnsvqpqqnivgypqpvstggtsysgyegiypqatPLQQVALALRqssspltslvaptasvsstattsttstamsekekrppqkrkfqelpvgskgpakhnqdlqpc
mtedshhtfssddsaistdgssqtrqrkkrkwdqpAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAReivindsessvrykltkrhtqeeiqkctgavvitrgKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTslvaptasvsstattsttstamsekekrppqkrkfqelpvgskgpakhnqdlqpc
MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLpgvpvapvvpapaaaafftnppvaSGATvppvvlqgplppKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVstggtsysgyEGIYPQATPLQQVALALRQSSSPLtslvaptasvsstattsttstamsEKEKRPPQKRKFQELPVGSKGPAKHNQDLQPC
*************************************SLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLP*KFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPN******KPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLR***************************************NLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVAL*****************************************************************
******************************************************************************************************IIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVI*******************LHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLR******************LHLFLSSNNPKSLEEAKRLAENLLDTISA****************************************************************************************************SGYEGIYPQA*************************************************************************
**********************************PAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQS***************************************FQELPV***************
*******************************WDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASG*****************QPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG*************GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQS**********************************************SK************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQDLQPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query481 2.2.26 [Sep-21-2011]
Q9LIA4 578 Protein RIK OS=Arabidopsi yes no 0.920 0.766 0.552 1e-132
Q32SG5 616 Protein RIK OS=Zea mays P N/A no 0.960 0.75 0.508 1e-114
Q2NLB0585 UPF0469 protein KIAA0907 N/A no 0.403 0.331 0.327 2e-26
Q6NZ18570 UPF0469 protein KIAA0907 yes no 0.392 0.331 0.327 7e-26
A0JM64 612 UPF0469 protein KIAA0907 yes no 0.403 0.316 0.323 9e-26
Q5ZL54 619 UPF0469 protein KIAA0907 yes no 0.403 0.313 0.319 5e-25
Q3TCX3 612 UPF0469 protein KIAA0907 yes no 0.403 0.316 0.319 5e-25
Q7Z7F0 614 UPF0469 protein KIAA0907 yes no 0.403 0.315 0.319 5e-25
Q09911534 Uncharacterized protein C yes no 0.538 0.485 0.239 7e-12
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2 Back     alignment and function desciption
 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/485 (55%), Positives = 336/485 (69%), Gaps = 42/485 (8%)

Query: 1   MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
           MTED+         + +T+ +S+TRQR+KRKWD+PAE L+     + G++ P + P+   
Sbjct: 1   MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55

Query: 60  VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRY 119
           +  P+ +      P+    +VP  V      PK NQPK+QDE+IIAREIVIND+E+S+R+
Sbjct: 56  MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103

Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHL--KETAERILAV 177
           +LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A L  KET ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163

Query: 178 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPND 234
           D AAAM+EEM+KQ      G   LQTV     + +ST V+LGF+AD S N+AARIRGPND
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQTV-----KMLSTCVYLGFEADPSSNVAARIRGPND 218

Query: 235 QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294
           QYINHIMNETGATV+LRGRGSG+ E   G+E   PLHL LS +NPKS+++AKRLAENL+D
Sbjct: 219 QYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLMD 278

Query: 295 TISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAP 354
           TIS E GASRVSS KVY AVPPPQQL++G  G   E + N  S   L +++ +++ P A 
Sbjct: 279 TISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQ-NLISTYGLMTSIPITAPPYAV 337

Query: 355 S---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPL 411
           S   V   T++Y Q  ++QS GI N         G  QPV+ GGTSYSGY GIYPQATPL
Sbjct: 338 SSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVA-GGTSYSGYAGIYPQATPL 388

Query: 412 QQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGP 471
           QQVA  L+QS SP+ S V PT  +++T+ +  +  A +E E+RPP+KRKFQELP   K P
Sbjct: 389 QQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNASNEMERRPPRKRKFQELPADCKVP 447

Query: 472 AKHNQ 476
            K  Q
Sbjct: 448 EKDKQ 452

Arabidopsis thaliana (taxid: 3702)
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1 Back     alignment and function description
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1 Back     alignment and function description
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1 Back     alignment and function description
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9 PE=2 SV=1 Back     alignment and function description
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1 Back     alignment and function description
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
296082200 659 unnamed protein product [Vitis vinifera] 0.933 0.681 0.648 1e-157
359488525566 PREDICTED: protein RIK-like [Vitis vinif 0.910 0.773 0.645 1e-154
224141071497 predicted protein [Populus trichocarpa] 0.962 0.931 0.620 1e-151
356568732 654 PREDICTED: protein RIK-like [Glycine max 0.972 0.715 0.567 1e-145
255573372 586 conserved hypothetical protein [Ricinus 0.887 0.728 0.644 1e-143
356523622 640 PREDICTED: protein RIK-like [Glycine max 0.979 0.735 0.576 1e-141
297815272 592 hypothetical protein ARALYDRAFT_905257 [ 0.933 0.758 0.561 1e-135
42565288578 protein RIK [Arabidopsis thaliana] gi|15 0.920 0.766 0.552 1e-130
11994521405 unnamed protein product [Arabidopsis tha 0.769 0.913 0.611 1e-120
357113418 661 PREDICTED: protein RIK-like [Brachypodiu 0.904 0.658 0.524 1e-115
>gi|296082200|emb|CBI21205.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 316/487 (64%), Positives = 354/487 (72%), Gaps = 38/487 (7%)

Query: 17  STDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPVVP---------APAAA 66
           S+D +S  RQRKKRKWDQPAESL+     S G++LPGV P+  V P         AP ++
Sbjct: 57  SSDEASAIRQRKKRKWDQPAESLV-----SAGVALPGVLPLGNVGPLVGIPLAGVAPPSS 111

Query: 67  AFFTNPPVASGATVPPVVLQGPLPP-------KFNQPKVQDELIIAREIVINDSESSVRY 119
           A  TN       T+PPV     +         K NQPK+QDELI AREI+IND+ES+VRY
Sbjct: 112 ALLTN------VTIPPVFQTSSIQQHASAIVQKLNQPKIQDELI-AREIIINDAESTVRY 164

Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDH 179
           KLTKR  QEEIQKCTGAVVITRGKYR PNA PDGEKPLYLHISAGAHLK+TAERI AVD 
Sbjct: 165 KLTKRQMQEEIQKCTGAVVITRGKYRPPNALPDGEKPLYLHISAGAHLKDTAERIKAVDR 224

Query: 180 AAAMVEEMLKQGH--AGFPTLQTVMGN-GV-QAMSTSVFLGFDADASLNIAARIRGPNDQ 235
           AAAMVEEMLKQG      P+   + GN GV QA ST VFLGF+AD SLNIAA IRGPNDQ
Sbjct: 225 AAAMVEEMLKQGQNSESVPSNSHLAGNTGVTQAPSTCVFLGFEADPSLNIAACIRGPNDQ 284

Query: 236 YINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 295
           YINHIMNETGATV LRGRGSGNSE   GE   QPLHLFLSSNN K LE+AK LAENLLDT
Sbjct: 285 YINHIMNETGATVSLRGRGSGNSESPNGEG-QQPLHLFLSSNNLKGLEDAKLLAENLLDT 343

Query: 296 ISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGS-AVILTSTVNLSSVPLAP 354
           I AECGASR SSCKVY AVPPPQQLL G+Q  GNE  +   S A + +S V+ +  PL  
Sbjct: 344 ICAECGASRASSCKVYGAVPPPQQLLVGVQSSGNELNVKTSSTACLASSAVSSTPTPLVS 403

Query: 355 --SVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQ 412
             +VPGV+T +SQG + Q GG  NS QPQ N+V YP P  T GTSYSGY GIYPQATPLQ
Sbjct: 404 PLTVPGVSTGFSQGAVSQCGGFFNSGQPQSNLVCYPPPSLTAGTSYSGYGGIYPQATPLQ 463

Query: 413 QVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPA 472
           QVALALRQS SP+TS +AP+ S +ST   S+ ++  SEKEKR PQ+RKFQELPV  KGP 
Sbjct: 464 QVALALRQSPSPVTSTIAPSTSSASTVPMSSAAS-FSEKEKRLPQRRKFQELPVALKGPT 522

Query: 473 KHNQDLQ 479
           K  Q LQ
Sbjct: 523 KPQQGLQ 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488525|ref|XP_003633772.1| PREDICTED: protein RIK-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141071|ref|XP_002323898.1| predicted protein [Populus trichocarpa] gi|222866900|gb|EEF04031.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356568732|ref|XP_003552564.1| PREDICTED: protein RIK-like [Glycine max] Back     alignment and taxonomy information
>gi|255573372|ref|XP_002527612.1| conserved hypothetical protein [Ricinus communis] gi|223532986|gb|EEF34751.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356523622|ref|XP_003530436.1| PREDICTED: protein RIK-like [Glycine max] Back     alignment and taxonomy information
>gi|297815272|ref|XP_002875519.1| hypothetical protein ARALYDRAFT_905257 [Arabidopsis lyrata subsp. lyrata] gi|297321357|gb|EFH51778.1| hypothetical protein ARALYDRAFT_905257 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42565288|ref|NP_566850.3| protein RIK [Arabidopsis thaliana] gi|156633616|sp|Q9LIA4.2|RIK_ARATH RecName: Full=Protein RIK; AltName: Full=Rough sheath 2-interacting KH domain protein; Short=RS2-interacting KH domain protein gi|62997489|gb|AAY24687.1| KH-domain protein [Arabidopsis thaliana] gi|332644059|gb|AEE77580.1| protein RIK [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994521|dbj|BAB02585.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357113418|ref|XP_003558500.1| PREDICTED: protein RIK-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
TAIR|locus:2093792 578 RIK "RS2-interacting KH protei 0.767 0.638 0.575 2.4e-110
UNIPROTKB|Q32SG5 616 Q32SG5 "Protein RIK" [Zea mays 0.781 0.610 0.525 1.6e-98
MGI|MGI:1921450 612 2810403A07Rik "RIKEN cDNA 2810 0.230 0.181 0.382 9.4e-23
ASPGD|ASPL0000075827466 AN4431 [Emericella nidulans (t 0.376 0.388 0.285 4.4e-12
POMBASE|SPAC30D11.14c534 SPAC30D11.14c "RNA-binding pro 0.313 0.282 0.254 1e-11
TAIR|locus:2093792 RIK "RS2-interacting KH protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1010 (360.6 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
 Identities = 226/393 (57%), Positives = 267/393 (67%)

Query:    92 KFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPP 151
             K NQPK+QDE+IIAREIVIND+E+S+R++LTKR TQE+IQ+ TGAVVITRGKYR PNAPP
Sbjct:    76 KVNQPKIQDEVIIAREIVINDAEASLRHRLTKRSTQEDIQRSTGAVVITRGKYRPPNAPP 135

Query:   152 DGEKPLYLHISAGAHL--KETAERILAVDHAAAMVEEMLKQ---GHAGFPTLQTVMGNGV 206
             DGEKPLYLHISA A L  KET ERILAVD AAAM+EEM+KQ      G   LQTV     
Sbjct:   136 DGEKPLYLHISAAAQLQLKETTERILAVDRAAAMIEEMMKQKSISQIGSVGLQTV----- 190

Query:   207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEV 266
             + +ST V+LGF+AD S N+AARIRGPNDQYINHIMNETGATV+LRGRGSG+ E   G+E 
Sbjct:   191 KMLSTCVYLGFEADPSSNVAARIRGPNDQYINHIMNETGATVVLRGRGSGSLENQHGDEA 250

Query:   267 HQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQG 326
               PLHL LS +NPKS+++AKRLAENL+DTIS E GASRVSS KVY AVPPPQQL++G  G
Sbjct:   251 QLPLHLLLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSKVYGAVPPPQQLISGAPG 310

Query:   327 FGNEQKLNAGSAVILTSTVNLSSVPLAPS---VPGVTTVYSQGMMLQSGGILNSVQPQQN 383
                E + N  S   L +++ +++ P A S   V   T++Y Q  ++QS GI N       
Sbjct:   311 SDQENQ-NLISTYGLMTSIPITAPPYAVSSFPVTPATSLYPQFPVMQSLGISNG------ 363

Query:   384 IVGYPQPVXXXXXXXXXXEGIYPQATPLQQVALALRQSSSPLXXXXXXXXXXXXXXXXXX 443
               G  QPV           GIYPQATPLQQVA  L+QS SP+                  
Sbjct:   364 --GPSQPVAGGTSYSGYA-GIYPQATPLQQVAQVLKQSISPVISTVPPTMLTATSLSIPS 420

Query:   444 XXXXXXEKEKRPPQKRKFQELPVGSKGPAKHNQ 476
                   E E+RPP+KRKFQELP   K P K  Q
Sbjct:   421 DNASN-EMERRPPRKRKFQELPADCKVPEKDKQ 452
GO:0005634 "nucleus" evidence=ISM;TAS
GO:0008150 "biological_process" evidence=ND
GO:0003723 "RNA binding" evidence=TAS
UNIPROTKB|Q32SG5 Q32SG5 "Protein RIK" [Zea mays (taxid:4577)] Back     alignment and assigned GO terms
MGI|MGI:1921450 2810403A07Rik "RIKEN cDNA 2810403A07 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000075827 AN4431 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC30D11.14c SPAC30D11.14c "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LIA4RIK_ARATHNo assigned EC number0.55250.92090.7664yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
cd02395120 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho 0.002
>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information 
 Score = 38.0 bits (89), Expect = 0.002
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 18/81 (22%)

Query: 125 HTQEEIQKCTGAVVITRGKY-----------RLPNAPPDGEKPLYLHISAGAHLKETAER 173
           +T ++++K TGA +  RGK            R P       +PL++ I+A    +E    
Sbjct: 26  NTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHL-NEPLHVLITAETPPEE---- 80

Query: 174 ILAVDHAAAMVEEMLKQGHAG 194
             A+  A   +EE+LK    G
Sbjct: 81  --ALAKAVEAIEELLKPAIEG 99

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 481
KOG1960531 consensus Predicted RNA-binding protein, contains 100.0
KOG0119 554 consensus Splicing factor 1/branch point binding p 99.95
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 99.93
KOG1588259 consensus RNA-binding protein Sam68 and related KH 99.87
COG5176269 MSL5 Splicing factor (branch point binding protein 99.83
KOG1960531 consensus Predicted RNA-binding protein, contains 99.24
KOG1676 600 consensus K-homology type RNA binding proteins [RN 99.2
KOG0334997 consensus RNA helicase [RNA processing and modific 99.07
PRK13763180 putative RNA-processing protein; Provisional 98.78
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 98.78
KOG1676600 consensus K-homology type RNA binding proteins [RN 98.56
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 98.49
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 98.48
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 98.4
smart0032269 KH K homology RNA-binding domain. 98.37
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 98.17
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 98.12
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 97.99
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 97.72
PF1301443 KH_3: KH domain 97.67
PRK13763180 putative RNA-processing protein; Provisional 97.46
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 97.33
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 97.27
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 97.12
COG1094194 Predicted RNA-binding protein (contains KH domains 97.05
KOG0119554 consensus Splicing factor 1/branch point binding p 97.04
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 97.0
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 96.83
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 96.75
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 96.73
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 96.08
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 95.77
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 95.44
KOG2191 402 consensus RNA-binding protein NOVA1/PASILLA and re 95.4
KOG2874356 consensus rRNA processing protein [Translation, ri 95.19
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 94.97
KOG2814345 consensus Transcription coactivator complex, P50 c 94.11
PRK00106535 hypothetical protein; Provisional 93.89
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 93.8
PRK12704520 phosphodiesterase; Provisional 93.69
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 92.76
KOG0336 629 consensus ATP-dependent RNA helicase [RNA processi 91.85
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 90.22
KOG2192390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 89.17
KOG1588259 consensus RNA-binding protein Sam68 and related KH 87.83
PRK12705508 hypothetical protein; Provisional 86.51
KOG2113394 consensus Predicted RNA binding protein, contains 85.73
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 85.43
KOG2192390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 83.43
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 82.42
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-39  Score=332.75  Aligned_cols=266  Identities=18%  Similarity=0.158  Sum_probs=203.3

Q ss_pred             HHhhhcCCccccccccCCCccc--CCCCCCCCC-CCCCC--ccccccccCCCcccCCCCCCCccccCCCCCCCCCCCCCC
Q 011603           26 QRKKRKWDQPAESLINFPLASF--GISLPGVPV-APVVP--APAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQD  100 (481)
Q Consensus        26 ~r~~~kwdqpa~~~~~~p~~~~--g~~~pg~~~-~~~~~--aa~~~a~~~~~~~~~~~~~pp~~~~~~~~~~~~~~k~~d  100 (481)
                      --++|||||+++..-.+++...  +.-.|+..- .....  ++++-++.+|+-+-..-..-+-.- .+..-+...++.+|
T Consensus        12 ~~~~~~WD~~~~~d~~~~~~~~~s~~~~p~eS~~~~~~~h~~~~s~s~~~N~~~~~k~~~~~~~N-a~~~i~~p~N~~K~   90 (531)
T KOG1960|consen   12 DNYSRDWDSRFTEDSYSRRDSQRSGNEAPRESRYYRKEEHLQERSRSRSPNRDSRWKSSSSGFAN-AHPPIEEPTNNGKE   90 (531)
T ss_pred             CCccccccCCCCCccccCchhhhccCCCCCcccccCcchhhhhhhhccCcchhcccccccccccc-ccchhhcccccchh
Confidence            3578999999997765544332  333444221 11000  222333444442210000000000 01111223455556


Q ss_pred             ceeEEEEEEcCCCCcccceeeechhhHHHHHhhhCCeEeeecceeCCCCC--CCCCCCeEEEEeeccchhhHHHHHHHHH
Q 011603          101 ELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEKPLYLHISAGAHLKETAERILAVD  178 (481)
Q Consensus       101 e~~~~aEIeINDlpq~~R~~LTk~~Tq~eI~e~TGA~VtTRGrY~PP~~~--~~gepPLYL~Ieg~tq~kdt~ERi~aVd  178 (481)
                      ++ ..++++|||.+++|||.+|+|.++++|.+++|+.|.+||+|++++..  .++++||||||.+.|  .      +.++
T Consensus        91 ~~-~~a~~~iN~~~~~~~~~~TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T--~------Ei~~  161 (531)
T KOG1960|consen   91 AA-AAAARRINESLQSTKATSTRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPST--A------EITS  161 (531)
T ss_pred             HH-HHHHHHhhcccccccceeccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCcc--H------HHHH
Confidence            66 88999999999999999999999999999999999999999999974  578999999999977  2      5999


Q ss_pred             HHHHHHHHHHHcCC--CC--------CCCc---------cccCCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHH
Q 011603          179 HAAAMVEEMLKQGH--AG--------FPTL---------QTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINH  239 (481)
Q Consensus       179 ~AvaeIkEILKe~p--~~--------~pp~---------~~p~~~G~k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~  239 (481)
                      +|+++|+-.++.+.  +.        .+.+         .++..+|++|++ |.||++| +|.||+.++.-|++..||.+
T Consensus       162 ~Ai~RIkgv~~~~~~~~n~~~V~i~~~~sP~~~i~~~V~~~~f~~G~~Y~~-k~~v~~~-~P~~~~K~~~~~r~d~~La~  239 (531)
T KOG1960|consen  162 KAIERIKGVFMQDVEINNVRNVYILVRASPLSEIENKVGVQLFSKGRYYPN-KALATDK-DPPLYLKIVSHNRKDLTLAL  239 (531)
T ss_pred             HHHhhCccceeecccccccceEEEeecCCchhhhccccccccccccccchh-heecccC-CcchhhhhhccCccchhhhh
Confidence            99999997766652  11        1111         123578899999 9999999 99999999999999999999


Q ss_pred             HHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011603          240 IMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGAS  303 (481)
Q Consensus       240 Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~eE~~~~  303 (481)
                      |+.||++++.|||||||.+|++.|+|++|||||+|+|.+.+.+.+||++|+||+++|+.+|.+|
T Consensus       240 ~~ie~~i~~l~~Gr~SG~iEP~~G~EsnEPMYI~i~h~~~~g~~~A~r~~~nl~~~v~~~~sr~  303 (531)
T KOG1960|consen  240 QEIESWINPLIDGRRSGRREPNEGNESNEPMYIFSTHGNGNGENGAPRRKWNLEEKVYINLSRG  303 (531)
T ss_pred             hhhhhhhhhhhccccccccCcccccccCCceeEEeecCCchhhccchhHHHhHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999765

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
2yqr_A119 Solution Structure Of The Kh Domain In Kiaa0907 Pro 2e-15
>pdb|2YQR|A Chain A, Solution Structure Of The Kh Domain In Kiaa0907 Protein Length = 119 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 213 VFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLH 271
           +F+G + A  + N+  ++ GP   Y+ HI  ETGA V LRG+GSG  E   G E  +P++
Sbjct: 16  LFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMY 75
Query: 272 LFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 317
           +++S   P+ L  AK+L ENLL T+ AE   SR  + ++  AVP P
Sbjct: 76  IYISHPKPEGLAAAKKLCENLLQTVHAE--YSRFVN-QINTAVPLP 118

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 9e-27
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 5e-04
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 1e-14
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 3e-04
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
 Score =  103 bits (258), Expect = 9e-27
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 205 GVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQG 263
           G+  +   +F+G + A  + N+  ++ GP   Y+ HI  ETGA V LRG+GSG  E   G
Sbjct: 8   GMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASG 67

Query: 264 EEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 317
            E  +P+++++S   P+ L  AK+L ENLL T+ AE         ++  AVP P
Sbjct: 68  REAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE---YSRFVNQINTAVPLP 118
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 99.97
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 99.93
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 99.91
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.34
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 99.32
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 99.16
1j4w_A174 FUSE binding protein; single-stranded DNA binding 99.12
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 99.09
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 98.88
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 98.69
1x4m_A94 FAR upstream element binding protein 1; KH domain, 98.69
1x4n_A92 FAR upstream element binding protein 1; KH domain, 98.63
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 98.62
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 98.6
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 98.59
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 98.59
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 98.57
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 98.56
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 98.55
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 98.53
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 98.52
1we8_A104 Tudor and KH domain containing protein; structural 98.5
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 98.48
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 98.47
2dgr_A83 Ring finger and KH domain-containing protein 1; st 98.46
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 98.42
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 98.4
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 98.33
1tua_A191 Hypothetical protein APE0754; structural genomics, 98.27
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 98.21
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 98.04
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.02
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.98
2cpq_A91 FragIle X mental retardation syndrome related prot 97.85
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 97.68
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 97.66
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 97.66
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.65
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 97.5
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 97.41
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 97.1
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 96.84
3n89_A376 Defective in GERM LINE development protein 3, ISO; 96.59
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 96.58
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 96.39
3n89_A376 Defective in GERM LINE development protein 3, ISO; 96.17
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 96.09
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 95.58
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 95.22
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 95.1
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 94.87
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 94.85
1x4n_A92 FAR upstream element binding protein 1; KH domain, 94.7
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 94.55
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 94.49
1x4m_A94 FAR upstream element binding protein 1; KH domain, 94.36
1we8_A104 Tudor and KH domain containing protein; structural 94.34
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 94.16
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 94.1
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 94.05
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 94.01
2dgr_A83 Ring finger and KH domain-containing protein 1; st 93.81
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 93.78
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 93.72
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 93.35
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 92.62
4fxw_B124 Splicing factor 1; UHM, protein binding, phosphory 92.41
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 92.15
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 92.14
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 91.64
1tua_A191 Hypothetical protein APE0754; structural genomics, 90.4
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 88.74
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 81.51
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=8.3e-31  Score=230.42  Aligned_cols=103  Identities=37%  Similarity=0.671  Sum_probs=99.2

Q ss_pred             CCCcccceeEEEecCC-CCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 011603          203 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS  281 (481)
Q Consensus       203 ~~G~k~~eeKI~Iple-~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~  281 (481)
                      ..|++|+++|||||++ ++|+|||+|+||||+|+|+|+|++||||||.||||||+++|+.+++|++|||||+|+++++++
T Consensus         6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~   85 (119)
T 2yqr_A            6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG   85 (119)
T ss_dssp             CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred             CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence            4677999999999999 699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccc
Q 011603          282 LEEAKRLAENLLDTISAECGASRV  305 (481)
Q Consensus       282 v~~Ak~LiE~LL~tV~eE~~~~r~  305 (481)
                      +++|++||++||.+++++|+.|+-
T Consensus        86 i~~A~~~Ie~Ll~~v~~~~~~~~~  109 (119)
T 2yqr_A           86 LAAAKKLCENLLQTVHAEYSRFVN  109 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHH
Confidence            999999999999999999999953
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 481
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 2e-15
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 4e-04
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 1e-14
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 9e-04
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 213 VFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEGLQGEEV 266
           V +  D    +N    + GP    + +I  E  A +++RG+GS      G  +G      
Sbjct: 7   VMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE 66

Query: 267 HQPLHLFLSSNNPKSLEEAKRLAENLLD 294
            +PLH  +++N  +++++A     N+L 
Sbjct: 67  DEPLHALVTANTMENVKKAVEQIRNILK 94
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 99.95
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 99.94
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 98.74
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 98.61
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 98.59
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 98.58
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 98.55
d2cpqa178 Fragile X mental retardation syndrome related prot 98.55
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 98.54
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.53
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.52
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 98.4
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.35
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.35
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.35
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 98.34
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.2
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 98.2
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 98.2
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 98.18
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 98.1
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.08
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.02
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 97.42
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 97.03
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 96.75
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 96.13
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 96.02
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 95.75
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 95.68
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 95.64
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 95.31
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 95.18
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 95.03
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 94.45
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 94.44
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 94.32
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 93.99
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 93.72
d2cpqa178 Fragile X mental retardation syndrome related prot 92.16
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 88.92
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 85.91
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 85.91
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-29  Score=220.81  Aligned_cols=88  Identities=24%  Similarity=0.434  Sum_probs=81.0

Q ss_pred             cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCC------CCCCCCCCCCCcEEEEEeCCHHH
Q 011603          208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNS------EGLQGEEVHQPLHLFLSSNNPKS  281 (481)
Q Consensus       208 ~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~------E~~~g~Es~EPLHV~Isa~~~e~  281 (481)
                      .+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++.      +....++.+|||||||++++++.
T Consensus         2 k~~~Ki~iP~~~~P~fNfvG~IlGPrG~t~K~Le~eTgckI~IrGrGS~kd~~~~~~~~~~~~~~~epLHv~I~a~~~~~   81 (122)
T d1k1ga_           2 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN   81 (122)
T ss_dssp             CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred             ceeEEEecCCccCCCCCeeeeEeCCCCchHHHHHHHHCCEEEEEecCCcccccccccCCCCCCCCCCCceEEEecCChhh
Confidence            468999999999999999999999999999999999999999999999643      34456678999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011603          282 LEEAKRLAENLLDT  295 (481)
Q Consensus       282 v~~Ak~LiE~LL~t  295 (481)
                      +++|+++|++||..
T Consensus        82 ~~~A~~~i~~ll~~   95 (122)
T d1k1ga_          82 VKKAVEQIRNILKQ   95 (122)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999965
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure