Citrus Sinensis ID: 011616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
Protein Sequence
MGKATKWFRSILGLKKPDPTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSSLKLNERETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSSALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSHEVEDFCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPVGQRF
Secondary Structure (PSIPRED)
ccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccHccHHHHHHHHHHHHHHHHHcHHHHHcccccccccccHHHHHHHcccccccccccHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGKATKWFRSIlglkkpdpthspsqpntkekRRWSFVKSYRekdssreatvkhsslklneretraddtpssecedANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLtsnsgrcgnfpsayvggfggtldepAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRaqisesshssgksshfqqpgpptpekfehsirsknskceVSSAlkkngsksngrvnvhhekahvswnwpesqmdnrsknqkaaptktgaiddersdkileidtgkmhftpkrrnlfhsshltvssdhyshsftsskdstahqtepspsscevqslsplkfshevedfctaenspqfysassrggsskrspftptksyssqsclsgysdhpnymaytessrakvrslsapkqrpqyersssakrysihtfaesKSSAQRFTALHANftnkaypgsgrldsfgmpvgqrf
Flexible Loop (DISEMBL)
mgkatkwfrsilglkkpdpthspsqpntkekrrwSFVKSyrekdssreatvkhsslklneretraddtpssecEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQIsesshssgksshfqqpgppTPEKFEHSIRSKNSKCEVSSAlkkngsksngrvnvhhekahvswnwpesqmdnrsknqkaaptktgaiddersdkILEIDTGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSHEVEDFCTAENSPQfysassrggsskrspftptksyssqSCLSGYSDHPNYMAYTESSRakvrslsapkqrpqyersssakrySIHTFAESKSSAQRFTALHANFTnkaypgsgrldsfgmpvgqrf
Low Complexity Region (SEG)
MGKATKWFRSILGLKKPDPTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSSLKLNERETRADDTPSSECEDANKHaiavaaataavaeaavaaahaaaavvRLTSNSGRCGNFPSAYVGGFGGTLDEPAAIKIQSAFRGYlarralralrglvrlqalvrgHIERKRTAEWlqrmqallraqararagraqIsesshssgkssHFQQPGPPTPEKFEHSIRSKNSKCEVSSALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGKMHFTPKRRNLFHSSHLTVssdhyshsftssKDSTAHQTEPSPSSCEVQSLSPLKFSHEVEDFCTAENSPQFYsassrggsskrsPFTPTKsyssqsclsgysDHPNYMAYTESSRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPVGQRF
Disordered region (IsUnstruct)
******************************************************************************HAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALL**********************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MGKATKWFRSI*****************************************************************************AVAEAAVAAAHAAAAV*************************DEPAAIKIQSAFRGYLARRALRALRGLVRLQALVR**IERKRTAEWLQRMQALLRA*************************************************************************************************************************************************************************************************************************************************************************************************MP*****
Disordered Region (DISEMBL)
MGKATKWFRSILGLKKP*************************************SLKLN****************ANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLR***************************************************************VNVHHEKAHVSWNWP*******************AIDDERSDKILEIDTGKMHFTPKRRNLFHSSHLTVS******************************LSPLKFSHEVEDFCTAENSPQ***************************LSGYSDHPNYMAYTE*************************RYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPVGQRF
Disordered Region (DISPRO)
****************************************************************ADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTS****************GGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES*************************RSKNSKCEVSSALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQ*************************************************************************************************************************************************************************************************SGRLDSFGMPVGQRF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKATKWFRSILGLKKPDPTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSSLKLNERETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSSALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSHEVEDFCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPVGQRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	481	2.2.26 [Sep-21-2011]
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.126	0.103	0.524	3e-11
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.139	0.100	0.447	3e-11
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.170	0.180	0.409	4e-09
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.130	0.079	0.444	1e-08

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 131 EPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARAR 190
           E AA  +Q+AFRGYLARRA  AL+G++RLQAL+RGH+ R++    L  +  ++R QA AR
Sbjct: 113 EIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFAR 172

Query: 191 A 191
            
Sbjct: 173 G 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 51/67 (76%)

Query: 133 AAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAG 192
           +A KIQ AFRGY+AR++ RAL+GLVRLQ +VRG+  +++T   ++ MQ ++R Q++ ++ 
Sbjct: 324 SATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSR 383

Query: 193 RAQISES 199
           R ++ E+
Sbjct: 384 RIKMLEN 390

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 121 YVGGFGG-TLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRM 179
            V  F G + +E AAI IQS FRG+LARR  + +RG  RL+ L+ G + +++ A  L+ M
Sbjct: 97  VVNRFAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCM 156

Query: 180 QALLRAQARARAGRAQISESSHS 202
           Q L R Q++ R+ R ++SE + +
Sbjct: 157 QTLSRVQSQIRSRRIRMSEENQA 179

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query: 129 LDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQAR 188
           LDE   + IQ+A RG+LARR L   + +++LQA VRGH+ R +    L+ +QA+++ QA 
Sbjct: 213 LDESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAM 272

Query: 189 ARA 191
            RA
Sbjct: 273 VRA 275

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
224058589	477	predicted protein [Populus trichocarpa]	0.966	0.974	0.665	1e-148
225426832	494	PREDICTED: uncharacterized protein LOC10	0.979	0.953	0.677	1e-139
255537319	491	calmodulin binding protein, putative [Ri	0.983	0.963	0.659	1e-135
147777534	530	hypothetical protein VITISV_040960 [Viti	0.979	0.888	0.630	1e-132
297742574	465	unnamed protein product [Vitis vinifera]	0.906	0.937	0.616	1e-116
356565291	447	PREDICTED: uncharacterized protein LOC10	0.918	0.988	0.559	1e-108
356513677	445	PREDICTED: uncharacterized protein LOC10	0.918	0.993	0.547	1e-107
356495659	396	PREDICTED: uncharacterized protein LOC10	0.804	0.977	0.489	1e-99
224071759	302	predicted protein [Populus trichocarpa]	0.561	0.894	0.661	2e-88
79482785	484	protein IQ-domain 22 [Arabidopsis thalia	0.898	0.892	0.474	3e-82

>gi|224058589|ref|XP_002299555.1| predicted protein [Populus trichocarpa] gi|222846813|gb|EEE84360.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 328/493 (66%), Positives = 380/493 (77%), Gaps = 28/493 (5%)

Query: 1   MGKATKWFRSILGLKKPDP-THSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSSLKLN 59
           MGKA+KWFR++LGLKKPDP    P    +K+KRRWSFVKS REKD              +
Sbjct: 1   MGKASKWFRAVLGLKKPDPPLDHPQTTRSKDKRRWSFVKSRREKD--------------H 46

Query: 60  ERETRADDTPSSEC---------EDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSN 110
           + + R  D  +S+          ED NKHA+AVAAATAAVAEAAVAAA AAA VVRLTS 
Sbjct: 47  DHQQRQQDIEASKTGVLYGQEFEEDPNKHAVAVAAATAAVAEAAVAAAQAAAEVVRLTS- 105

Query: 111 SGRCGNFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERK 170
           SGRC N   A V G  G  ++ AA+KIQ+AFRGYLARRALRAL+ LVRLQALVRGHIERK
Sbjct: 106 SGRCVNNSVANVSGSLGLREDLAAVKIQAAFRGYLARRALRALKALVRLQALVRGHIERK 165

Query: 171 RTAEWLQRMQALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSK 230
           RTAEWL RMQALLRAQ+RAR+GRAQISESSHSS KSS FQ PGPPTPEKFEH+IR+++ K
Sbjct: 166 RTAEWLHRMQALLRAQSRARSGRAQISESSHSSSKSSRFQHPGPPTPEKFEHAIRARSGK 225

Query: 231 CEVSSALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDK 290
            E SS LK+ GSK  GR     + AH+S NW E +MD+++ + +     TG IDD++SDK
Sbjct: 226 YEQSSILKRTGSKCKGRAIGDLDVAHLSLNWSERRMDDQTWDHQVPLAGTGTIDDDKSDK 285

Query: 291 ILEIDTGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSP 350
           ILEIDTGK H TPKRRNLFHSSHL++ SD YSHSFT++KDSTAHQT PSPSSCEVQSLSP
Sbjct: 286 ILEIDTGKPHITPKRRNLFHSSHLSL-SDQYSHSFTTTKDSTAHQTVPSPSSCEVQSLSP 344

Query: 351 LKFSHEVED-FCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYT 409
           LKFSH VE+  CTAENSPQFYSASSRGGSSKRSPFTP++S  S++ L GY  +PNYM  T
Sbjct: 345 LKFSHVVEEALCTAENSPQFYSASSRGGSSKRSPFTPSRSDGSRNFLIGYYGYPNYMCNT 404

Query: 410 ESSRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAESK-SSAQRFTALHANFTNKAYPGSG 468
           ESSRAK RSLSAPKQRPQYERSSS +RYS+    E + SSAQ  +AL A+F++KAYPGSG
Sbjct: 405 ESSRAKARSLSAPKQRPQYERSSSTRRYSVLGCGEPRSSSAQHASALRASFSSKAYPGSG 464

Query: 469 RLDSFGMPVGQRF 481
           RLD  GMP+GQ +
Sbjct: 465 RLDKLGMPIGQGY 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426832|ref|XP_002276651.1| PREDICTED: uncharacterized protein LOC100254717 [Vitis vinifera]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 328/484 (67%), Positives = 380/484 (78%), Gaps = 13/484 (2%)

Query: 1   MGKATKWFRSILGLKKPD-----PTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSS 55
           MGKA+KWFR +LGLKK D     P  +P++ +   KRRWSFV+SYREKD +R A  +  +
Sbjct: 1   MGKASKWFRGLLGLKKTDSPAPTPAPAPARLDKSVKRRWSFVRSYREKDHTRHANDRRGA 60

Query: 56  LKLNERETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCG 115
           L        A     ++  D NKHAIAVAAATAAVAEAAVAAA AAAAVVRLTS SGR  
Sbjct: 61  LYGEPHPPSA----YADGVDPNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTS-SGRSA 115

Query: 116 NFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEW 175
             PSAYV       +E A IKIQS FRGYLARRALRAL+ LV+LQALVRGHI RK+TA+ 
Sbjct: 116 A-PSAYVSAGFSAREEWAVIKIQSLFRGYLARRALRALKALVKLQALVRGHIVRKQTADM 174

Query: 176 LQRMQALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSS 235
           L+RMQAL+RAQARARAGRAQISESSHSSGKSS F  PGP TPEKFEH+IR+KN K + SS
Sbjct: 175 LRRMQALVRAQARARAGRAQISESSHSSGKSSQFHHPGPATPEKFEHAIRAKNMKQDQSS 234

Query: 236 ALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEID 295
            LK+N SK++GR  +  +K H+S NW + ++D  S +Q+ +  + G  DDE+SDKILEID
Sbjct: 235 ILKRNSSKASGRNIIDQDKTHLSRNWSDRRLDEGSWDQQGSSIRAGPTDDEKSDKILEID 294

Query: 296 TGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSH 355
           TGK +FTPKRRNLF SSH  V+SD  SHSFT+SKDST HQT PSPSSCEVQSLSPLKF  
Sbjct: 295 TGKPNFTPKRRNLFQSSHHGVASDQISHSFTTSKDSTTHQTVPSPSSCEVQSLSPLKFCQ 354

Query: 356 EVED--FCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSR 413
           EVE+  FCTA+NSPQFYSASSR GSS+R PFTPTKS  S+S LSGYSDHPNYMAYTESS+
Sbjct: 355 EVEEGSFCTADNSPQFYSASSRAGSSRRGPFTPTKSDGSRSYLSGYSDHPNYMAYTESSK 414

Query: 414 AKVRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSF 473
           AKVRS SAPKQRPQYERSSS KRYS+H F +S+S+AQR +A+HANFT+KAYPGSGRLD  
Sbjct: 415 AKVRSFSAPKQRPQYERSSSTKRYSVHGFGDSRSNAQRVSAMHANFTSKAYPGSGRLDRL 474

Query: 474 GMPV 477
           GMP+
Sbjct: 475 GMPI 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537319|ref|XP_002509726.1| calmodulin binding protein, putative [Ricinus communis] gi|223549625|gb|EEF51113.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 329/499 (65%), Positives = 377/499 (75%), Gaps = 26/499 (5%)

Query: 1   MGKATKWFRSILGLKKPDPT-------HSPSQPNTKEKRRWSFVKSYREKDSSREATVKH 53
           MGKA+KWFR++LG KK DP        H  +    KE +RWSFVKSYREKDS   +   +
Sbjct: 1   MGKASKWFRAVLGFKKSDPVPPHQTHQHQQTANRPKETKRWSFVKSYREKDSKNHSHNYN 60

Query: 54  SSLKLNERETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGR 113
            S +L  +E   +       ED NKHAIAVAAATAAVAEAAVAAAHAAA VVRLTS+SGR
Sbjct: 61  HSQQLTAQEVYNE-------EDPNKHAIAVAAATAAVAEAAVAAAHAAAEVVRLTSSSGR 113

Query: 114 C-----GNFPSAYVGGFGGT---LDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRG 165
           C      N   AYV     +    ++ AA+KIQSAFRGYLARRALRAL+ LVRLQALVRG
Sbjct: 114 CVANNNNNTAVAYVSENSNSHCWREDLAAVKIQSAFRGYLARRALRALKALVRLQALVRG 173

Query: 166 HIERKRTAEWLQRMQALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIR 225
           HIERKRT  WL RMQALL+AQARARAGRA ISESSHSS KSSHF  PGPPTPEKFEH+ R
Sbjct: 174 HIERKRTTAWLHRMQALLKAQARARAGRAHISESSHSSSKSSHFHHPGPPTPEKFEHATR 233

Query: 226 SKNSKCEVSSALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDD 285
           +++ K E SS LK+ GSKS G      ++AH+S+NW + +MD RS  Q+    ++G +DD
Sbjct: 234 ARSGKYEQSSILKRIGSKSIGMEIGDEDRAHISFNWSDRRMDERSWEQRVPSARSGTLDD 293

Query: 286 ERSDKILEIDTGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEV 345
           E+SDKILEIDTGK HFT KRRNLFHS   T + D YSHSFT+SKDS  HQT PSPSSCEV
Sbjct: 294 EKSDKILEIDTGKPHFTSKRRNLFHSLQ-TSTPDQYSHSFTNSKDSIVHQTVPSPSSCEV 352

Query: 346 QSLSPLKFSHEVED-FCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDH-P 403
           QSL+PLKF  E E+  CTAENSPQFYSASSRGGS +RSPFTP+KS  S S LSGYSD+ P
Sbjct: 353 QSLTPLKFPREDEEALCTAENSPQFYSASSRGGSGRRSPFTPSKSDGSTSFLSGYSDYFP 412

Query: 404 NYMAYTESSRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAESK-SSAQRFTALHANFTNK 462
           NYM+YTESSRAKVRSLSAPKQR QYERSSS KRYSIH F + + SSAQR +AL A+F +K
Sbjct: 413 NYMSYTESSRAKVRSLSAPKQRLQYERSSSMKRYSIHGFGDIRSSSAQRASALRASFASK 472

Query: 463 AYPGSGRLDSFGMPVGQRF 481
           AYPGSGRLD  GMP+GQR+
Sbjct: 473 AYPGSGRLDKLGMPIGQRY 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777534|emb|CAN75939.1| hypothetical protein VITISV_040960 [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 328/520 (63%), Positives = 380/520 (73%), Gaps = 49/520 (9%)

Query: 1   MGKATKWFRSILGLKKPD-----PTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSS 55
           MGKA+KWFR +LGLKK D     P  +P++ +   KRRWSFV+SYREKD +R A  +  +
Sbjct: 1   MGKASKWFRGLLGLKKTDSPAPTPAPAPARLDKSVKRRWSFVRSYREKDHTRHANDRRGA 60

Query: 56  LKLNERETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCG 115
           L        A     ++  D NKHAIAVAAATAAVAEAAVAAA AAAAVVRLTS SGR  
Sbjct: 61  LYGEPHPPSA----YADGVDPNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTS-SGRSA 115

Query: 116 NFPSAYVGGFGGTLDEPAAIKIQSAFRGYL----------------------------AR 147
             PSAYV       +E A IKIQS FRGYL                            AR
Sbjct: 116 A-PSAYVSAGFSAREEWAVIKIQSLFRGYLRFAASLGKINMAEAEAADTVTTSSFCVSAR 174

Query: 148 RALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISESSHSSGKSS 207
           RALRAL+ LV+LQALVRGHI RK+TA+ L+RMQAL+RAQARARAGRAQISESSHSSGKSS
Sbjct: 175 RALRALKALVKLQALVRGHIVRKQTADMLRRMQALVRAQARARAGRAQISESSHSSGKSS 234

Query: 208 HFQQPGPPTPEKFEHSIRSKNSKCEVSSALK--------KNGSKSNGRVNVHHEKAHVSW 259
            F  PGP TPEKFEH+IR+KN K + SS LK        +N SK++GR  +  +K H+S 
Sbjct: 235 QFHHPGPATPEKFEHAIRAKNMKQDQSSILKVCAVIFGLRNSSKASGRNIIDQDKTHLSR 294

Query: 260 NWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGKMHFTPKRRNLFHSSHLTVSSD 319
           NW + ++D  S +Q+ +  + G  DDE+SDKILEIDTGK +FTPKRRNLF SSH  V+SD
Sbjct: 295 NWSDRRLDEGSWDQQGSSIRAGPTDDEKSDKILEIDTGKPNFTPKRRNLFQSSHHGVASD 354

Query: 320 HYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSHEVED--FCTAENSPQFYSASSRGG 377
             SHSFT+SKDST HQT PSPSSCEVQSLSPLKF  EVE+  FCTA+NSPQFYSASSR G
Sbjct: 355 QISHSFTTSKDSTTHQTVPSPSSCEVQSLSPLKFCQEVEEGSFCTADNSPQFYSASSRAG 414

Query: 378 SSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQRPQYERSSSAKRY 437
           SS+R PFTPTKS  S+S LSGYSDHPNYMAYTESS+AKVRS SAPKQRPQYERSSS KRY
Sbjct: 415 SSRRGPFTPTKSDGSRSYLSGYSDHPNYMAYTESSKAKVRSFSAPKQRPQYERSSSTKRY 474

Query: 438 SIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPV 477
           S+H F +S+S+AQR +A+HANFT+KAYPGSGRLD  GMP+
Sbjct: 475 SVHGFGDSRSNAQRVSAMHANFTSKAYPGSGRLDRLGMPI 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742574|emb|CBI34723.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 297/482 (61%), Positives = 347/482 (71%), Gaps = 46/482 (9%)

Query: 1   MGKATKWFRSILGLKKPD-----PTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSS 55
           MGKA+KWFR +LGLKK D     P  +P++ +   KRRWSFV+SYREKD +R A  +  +
Sbjct: 1   MGKASKWFRGLLGLKKTDSPAPTPAPAPARLDKSVKRRWSFVRSYREKDHTRHANDRRGA 60

Query: 56  LKLNERETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCG 115
           L        A     ++  D NKHAIAVAAATAAVAEAAVAAA AAAAVVRLTS SGR  
Sbjct: 61  LYGEPHPPSA----YADGVDPNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTS-SGRSA 115

Query: 116 NFPSAYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEW 175
             PSAYV       +E A IKIQS FRGYLARRALRAL+ LV+LQALVRGHI RK+TA+ 
Sbjct: 116 A-PSAYVSAGFSAREEWAVIKIQSLFRGYLARRALRALKALVKLQALVRGHIVRKQTADM 174

Query: 176 LQRMQALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSS 235
           L+RMQAL+RAQARARAGRAQISESSHSSGKSS F  PGP TPEKFEH+IR+KN K + SS
Sbjct: 175 LRRMQALVRAQARARAGRAQISESSHSSGKSSQFHHPGPATPEKFEHAIRAKNMKQDQSS 234

Query: 236 ALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEID 295
            LK+N SK++GR  +  +K H+S NW + ++D  S +Q+ +  + G  DDE+SDKILEID
Sbjct: 235 ILKRNSSKASGRNIIDQDKTHLSRNWSDRRLDEGSWDQQGSSIRAGPTDDEKSDKILEID 294

Query: 296 TGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSH 355
           TGK +FTPKRRNLF SSH  V+SD    S                               
Sbjct: 295 TGKPNFTPKRRNLFQSSHHGVASDQIKGS------------------------------- 323

Query: 356 EVEDFCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAK 415
               FCTA+NSPQFYSASSR GSS+R PFTPTKS  S+S LSGYSDHPNYMAYTESS+AK
Sbjct: 324 ----FCTADNSPQFYSASSRAGSSRRGPFTPTKSDGSRSYLSGYSDHPNYMAYTESSKAK 379

Query: 416 VRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGM 475
           VRS SAPKQRPQYERSSS KRYS+H F +S+S+AQR +A+HANFT+KAYPGSGRLD  GM
Sbjct: 380 VRSFSAPKQRPQYERSSSTKRYSVHGFGDSRSNAQRVSAMHANFTSKAYPGSGRLDRLGM 439

Query: 476 PV 477
           P+
Sbjct: 440 PI 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565291|ref|XP_003550875.1| PREDICTED: uncharacterized protein LOC100776656 [Glycine max]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 272/486 (55%), Positives = 330/486 (67%), Gaps = 44/486 (9%)

Query: 1   MGKATKWFRSILGLKKPDPTHSPSQPNTKEKRRWSFVKS-YREKDSSREATVKHSSLKLN 59
           MGKA+KWFR +LGLKK +   SP++P  KEKRRWSFVKS Y EKD++  AT         
Sbjct: 1   MGKASKWFRGLLGLKKTEYATSPAKP-PKEKRRWSFVKSSYTEKDNTTAATC-------- 51

Query: 60  ERETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPS 119
                          + N HA+AVAAATAAVAEAAVAAA AAA VVRLTSNSGRC +   
Sbjct: 52  -----------PPLRNNNNHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSNSGRCAD--- 97

Query: 120 AYVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRM 179
              GG        AA+KIQ+AFRG LARRALRAL+GLV+LQALVRGHIERKRTAEWL+R+
Sbjct: 98  ---GGPTRIRQHWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAEWLKRL 154

Query: 180 QALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSSALKK 239
           QALL AQ +  AG   +  S  SS  SSH Q  GP TPEKFE  IRSK+ K E S  LK+
Sbjct: 155 QALLHAQTQVSAG-LTLHASPSSSKLSSHLQ--GPETPEKFESPIRSKSMKHEHSPILKR 211

Query: 240 NGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGKM 299
           NGSKS   +N + E   +  +  ESQ + +  N   +  +    +DER+ K+LE+D+GK 
Sbjct: 212 NGSKSCALINGYQE---ICGSRSESQGNEQLWNSGRSMNRAHGSNDERNGKVLEVDSGKP 268

Query: 300 HFTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQS--LSPLKFSHEV 357
           HFT KRRNL +S+     SD YS S  S+K+ST+ Q+  SP  CEVQS   S  K ++EV
Sbjct: 269 HFTLKRRNLSYST----GSDLYSKSLNSTKESTSLQSAQSPC-CEVQSHSYSSQKVNNEV 323

Query: 358 ED--FCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAK 415
           E+  FCTA+NSPQ+ SASS+    KRSPFTPT+S  S+S + GY D+P+YMA TESS+AK
Sbjct: 324 EESPFCTADNSPQYLSASSKDDGFKRSPFTPTRSDGSRSYIRGYPDYPSYMACTESSKAK 383

Query: 416 VRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGM 475
            RSLSAPKQRPQ ERS S+ RYS++ F  S+ + QR  A+ A+FTNKAYPGSGRLD  GM
Sbjct: 384 ARSLSAPKQRPQSERSGSSDRYSLNGFDMSRLATQR--AMQASFTNKAYPGSGRLDKLGM 441

Query: 476 PVGQRF 481
           PVG RF
Sbjct: 442 PVGYRF 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513677|ref|XP_003525537.1| PREDICTED: uncharacterized protein LOC100793587 [Glycine max]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 265/484 (54%), Positives = 328/484 (67%), Gaps = 42/484 (8%)

Query: 1   MGKATKWFRSILGLKKPDPTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSSLKLNE 60
           MGKATKWFR   GLKK + T  P++P  KEKRRWSFVKSY EKD++  AT          
Sbjct: 1   MGKATKWFRGFFGLKKTEYTAPPAKP-PKEKRRWSFVKSYTEKDNTTAATCPPQ------ 53

Query: 61  RETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSA 120
                         + N HA+AVAAATAAVAEAAVAAA AAA VVRLTS+SGRC +    
Sbjct: 54  -------------RNNNNHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSSSGRCAD---- 96

Query: 121 YVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQ 180
              G        AA++IQ+AFRG LARRALRAL+GLV+LQALVRGHIERKRTAEWL+R+Q
Sbjct: 97  --AGPTRIRQHWAAVRIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAEWLKRVQ 154

Query: 181 ALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSSALKKN 240
            LL AQ +  AG   +  S   S  SSH    GP TPEKFE  IRSK+ K E S  LK+N
Sbjct: 155 VLLHAQPQVSAGLI-LHASPSGSKLSSHLH--GPETPEKFESPIRSKSMKHEHSPILKRN 211

Query: 241 GSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGKMH 300
           GSKS  ++N + E   +  +  ESQ++ +S N   +  +T + +DER+D++LE+D+GK H
Sbjct: 212 GSKSCVQINGYQE---MCGSRSESQVNEQSWNSGRSLNRTYSSNDERNDRVLEVDSGKPH 268

Query: 301 FTPKRRNLFHSSHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPL-KFSHEVED 359
           FT KR+NL      +  SD YS S  S+K+ST+ Q+  S S CEVQS S   +  +EVE+
Sbjct: 269 FTIKRKNL----SFSTGSDLYSKSLNSTKESTSLQSGQS-SCCEVQSHSYTSQKVNEVEE 323

Query: 360 --FCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAKVR 417
             FCTA+NSPQ+ SA+S+ G  KRSPFTPTKS  S+S + GY D+P+YMA TESS+AK R
Sbjct: 324 SPFCTADNSPQYLSATSKDGGFKRSPFTPTKSDGSRSYIRGYPDYPSYMACTESSKAKAR 383

Query: 418 SLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPV 477
           SLSAPKQRPQ E+S S+ RYS++ F  S+ + QR  A+ A+FTNKAYPGSGRLD  GMPV
Sbjct: 384 SLSAPKQRPQSEKSGSSNRYSLNGFDMSRLATQR--AMQASFTNKAYPGSGRLDKLGMPV 441

Query: 478 GQRF 481
           G RF
Sbjct: 442 GYRF 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495659|ref|XP_003516692.1| PREDICTED: uncharacterized protein LOC100814244 [Glycine max]

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 240/490 (48%), Positives = 301/490 (61%), Gaps = 103/490 (21%)

Query: 1   MGKATKWFRSILGLKKPDPTHSPSQPNTKEKRRWSFVKSYREKDSSREATVKHSSLKLNE 60
           MGKA+KWFR +LGLK+PD       P+ KEKRRW+FVKSYREKD +R             
Sbjct: 1   MGKASKWFRGLLGLKRPD------SPSPKEKRRWTFVKSYREKDPTR------------- 41

Query: 61  RETRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSA 120
                                 + AAT     A  A                  GN P  
Sbjct: 42  ----------------------IVAATPRRCPATTAG-----------------GNTP-- 60

Query: 121 YVGGFGGTLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQ 180
                    +E AA+KIQ+AFRG LAR+ALRAL+GLV+LQALVRGHIERKRTAEWLQR+Q
Sbjct: 61  ---------EEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLQRVQ 111

Query: 181 ALLRAQARARAGRAQISESSHSSGKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSSA--LK 238
           ALLR QA+ RAGRAQI    HS   +SH +  GP TP+KFE  IRS++ K +  S+  LK
Sbjct: 112 ALLRVQAQIRAGRAQI---LHSPSSTSHLR--GPATPDKFEIPIRSESMKYDQYSSPLLK 166

Query: 239 KNGSKSNGRVNVHHEKAHVSWNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGK 298
           +N SKS  ++N  +++   S    +S++D +   Q+ + T+  ++D+ERS +ILEID+ K
Sbjct: 167 RNSSKSRVQINGGNQERCRS-RSSDSRIDEQPWTQRRSWTRGCSMDEERSVRILEIDSVK 225

Query: 299 MHFTPKRRNLFHS-SHLTVSSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSHEV 357
            H T KRRNLF+S S   V SDHY         S  + T  SPSS      SPLK  +E+
Sbjct: 226 PHVTSKRRNLFYSPSQAMVVSDHY---------SGCNLTTTSPSSYN----SPLKI-NEL 271

Query: 358 ED--FCTAENSPQF--YSASSRGGSSKRSPFTPTKSYSSQSCLSGYSD--HPNYMAYTES 411
           E+  FC A+NSPQ    S+SS+ G+SKRSP TPT+S  S+S LSGYS+  +P+YMAYTES
Sbjct: 272 EESSFCAADNSPQALSLSSSSKDGASKRSPLTPTRSDGSRSFLSGYSEPNYPSYMAYTES 331

Query: 412 SRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALHANFTNKAYPGSGRLD 471
           S+AK+RSLSAPKQRPQYER SS+ RYS+H  A      QR  ALHA+FTNKAYPGSGRLD
Sbjct: 332 SKAKLRSLSAPKQRPQYERCSSSNRYSLHGLA-----TQRIAALHASFTNKAYPGSGRLD 386

Query: 472 SFGMPVGQRF 481
             GM V  ++
Sbjct: 387 KLGMHVPYKY 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071759|ref|XP_002303569.1| predicted protein [Populus trichocarpa] gi|222841001|gb|EEE78548.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/275 (66%), Positives = 213/275 (77%), Gaps = 5/275 (1%)

Query: 209 FQQPGPPTPEKFEHSIRSKNSKCEVSSALKKNGSKSNGRVNVHHEKAHVSWNWPESQMDN 268
           +  PG PT EK EH+IR+ + K E SS LK+ GSK+ GR     + AH+S+NW E  MD+
Sbjct: 31  YHLPGLPTHEKSEHAIRATSGKYEQSSMLKRTGSKTKGREIADQDVAHLSFNWSEHGMDS 90

Query: 269 RSKNQKAAPTKTGAIDDERSDKILEIDTGKMHFTPKRRNLFHSSHLTVSSDHYSHSFTSS 328
           R+ + +A    TG IDD   DKILEID+GK H TPKRRNLFH SHL++S+D YSHSFT+S
Sbjct: 91  RTWDHQAPSPGTGPIDD---DKILEIDSGKPHITPKRRNLFHPSHLSLSADQYSHSFTTS 147

Query: 329 KDSTAHQTEPSPSSCEVQSLSPLKFSHEVED-FCTAENSPQFYSASSRGGSSKRSPFTPT 387
           K ST  Q  PSPSS EVQS SPLKFSHEVE+ FCTA+NSPQF SASSRGGS KRSPFTP+
Sbjct: 148 KGSTVRQAVPSPSSGEVQSFSPLKFSHEVEEAFCTADNSPQFCSASSRGGSGKRSPFTPS 207

Query: 388 KSYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAE-SK 446
           +S  S+S +SGYSD+PNYM  TESSRAKVRSLSAPKQRPQYERSSS KRYS+  F E   
Sbjct: 208 RSGGSRSFMSGYSDYPNYMCNTESSRAKVRSLSAPKQRPQYERSSSTKRYSVLGFGEQRS 267

Query: 447 SSAQRFTALHANFTNKAYPGSGRLDSFGMPVGQRF 481
           SSAQ  +AL A+FT+KAYPGSGRLD  GMPVGQ++
Sbjct: 268 SSAQSASALRASFTSKAYPGSGRLDRLGMPVGQKY 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79482785|ref|NP_194037.2| protein IQ-domain 22 [Arabidopsis thaliana] gi|56693675|gb|AAW22634.1| calmodulin binding protein IQD22 [Arabidopsis thaliana] gi|332659301|gb|AEE84701.1| protein IQ-domain 22 [Arabidopsis thaliana]

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 253/533 (47%), Positives = 311/533 (58%), Gaps = 101/533 (18%)

Query: 1   MGKATKWFRSILGLKKPDPTH------SPSQPNTKE-KRRWSFVKSYREKDSSREATVKH 53
           MGKA++WFRS+ G+KKPDP +      +PS+  +   KRRWSFVKS REK+S+    V H
Sbjct: 1   MGKASRWFRSLFGVKKPDPGYPDLSVETPSRSTSSNLKRRWSFVKSKREKESTPINQVPH 60

Query: 54  SSLKLNER-----------ETRADDTPSSE---CEDANKHAIAVAAATAAVAEAAVAAAH 99
           +    N               R    P  E    ED++KHAIAVAAATAAVAEAAVAAA+
Sbjct: 61  TPSLPNSTPPPPSHHQSSPRRRRKQKPMWEDEGSEDSDKHAIAVAAATAAVAEAAVAAAN 120

Query: 100 AAAAVVRLTSNSGRCGNFP--SAYVGGFGGTLD-------------EPAAIKIQSAFRGY 144
           AAAAVVRLTS SGR    P  + +  GF   +              E A IKIQS FRGY
Sbjct: 121 AAAAVVRLTSTSGRSTRSPVKARFSDGFDDVVAHGSKFYGHGRDSCELAVIKIQSIFRGY 180

Query: 145 LARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISESSHSS- 203
           LA+RALRAL+GLVRLQA+VRGHIERKR +  L+RM AL+RAQAR RA R  ++  S SS 
Sbjct: 181 LAKRALRALKGLVRLQAIVRGHIERKRMSVHLRRMHALVRAQARVRATRVIVTPESSSSQ 240

Query: 204 ---GKSSHFQQPGPPTPEKFEHSIRSKNSKCEVSSALKKNGSKS--NGRVNVHHEKAHVS 258
               KSSHFQ PGPPTPEK EHSI S++SK   S   K+NGSK+  N R+   H +    
Sbjct: 241 SNNTKSSHFQNPGPPTPEKLEHSISSRSSKLAHSHLFKRNGSKASDNNRLYPAHRETF-- 298

Query: 259 WNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILEIDTGKM-HFTPKRR-NLFHSSHLTV 316
                                  A D+E  +KIL+ID   +  +T + R ++F+SSHL +
Sbjct: 299 ----------------------SATDEE--EKILQIDRKHISSYTRRNRPDMFYSSHLIL 334

Query: 317 SSDHYSHSFTSSKDSTAHQTEPSPSSCEVQSLSPLKFSHEVEDFCTAENSPQFYSASSRG 376
            +   S    ++  S      PS S  E+ S            FCTAENSPQ YSA+SR 
Sbjct: 335 DNAGLSEPVFATPFS------PSSSHEEITS-----------QFCTAENSPQLYSATSR- 376

Query: 377 GSSKRSPFTPTK---SYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQRPQ--YERS 431
             SKRS FT +    S  ++SC  G  DHP+YMA TESSRAK RS SAPK RPQ  YER 
Sbjct: 377 --SKRSAFTASSIAPSDCTKSCCDG--DHPSYMACTESSRAKARSASAPKSRPQLFYERP 432

Query: 432 SSAKRYSIHTF---AESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPVGQRF 481
           SS KR+         ++KS  Q+ +ALH +F NKAYPGSGRLD  GMP+G R+
Sbjct: 433 SS-KRFGFVDLPYCGDTKSGPQKGSALHTSFMNKAYPGSGRLDRLGMPIGYRY 484

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
TAIR|locus:2127243	484	IQD22 "AT4G23060" [Arabidopsis	0.390	0.388	0.401	7.6e-56
TAIR|locus:2174088	403	IQD23 "AT5G62070" [Arabidopsis	0.203	0.243	0.361	1.9e-16
TAIR|locus:2182920	401	IQD24 "AT5G07240" [Arabidopsis	0.176	0.211	0.383	7.3e-14
TAIR|locus:2088319	389	IQD26 "AT3G16490" [Arabidopsis	0.164	0.203	0.361	6.7e-12
TAIR|locus:2130200	387	IQD19 "AT4G14750" [Arabidopsis	0.197	0.245	0.350	1e-09
TAIR|locus:2119951	399	IQD25 "AT4G29150" [Arabidopsis	0.072	0.087	0.571	2.5e-05
TAIR|locus:2134628	534	iqd17 "AT4G00820" [Arabidopsis	0.417	0.376	0.229	6.6e-05
TAIR|locus:2034011	351	IQD27 "AT1G51960" [Arabidopsis	0.205	0.282	0.314	0.00027

TAIR|locus:2127243 IQD22 "AT4G23060" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 7.6e-56, Sum P(3) = 7.6e-56
 Identities = 90/224 (40%), Positives = 112/224 (50%)

Query:   270 SKNQKAAPT--KTGAIDDERSDKILEIDTGKMH-FTPKRR-NLFHSSHLTVXXXXXXXXX 325
             S N +  P   +T +  DE  +KIL+ID   +  +T + R ++F+SSHL +         
Sbjct:   285 SDNNRLYPAHRETFSATDEE-EKILQIDRKHISSYTRRNRPDMFYSSHLILDNAGLS--- 340

Query:   326 XXXKDSTAHQTEPSPSSCEVQSLSPLKFSHE--VEDFCTAENSPQFYXXXXXXXXXXXXP 383
                       T  SPSS           SHE     FCTAENSPQ Y             
Sbjct:   341 -----EPVFATPFSPSS-----------SHEEITSQFCTAENSPQLYSATSRSKRSA--- 381

Query:   384 FTPTKXXXXXXXXXX-XXDHPNYMAYTESSRAKVRSLSAPKQRPQ--YERSSSAKRYSIH 440
             FT +              DHP+YMA TESSRAK RS SAPK RPQ  YER SS KR+   
Sbjct:   382 FTASSIAPSDCTKSCCDGDHPSYMACTESSRAKARSASAPKSRPQLFYERPSS-KRFGFV 440

Query:   441 TF---AESKSSAQRFTALHANFTNKAYPGSGRLDSFGMPVGQRF 481
                   ++KS  Q+ +ALH +F NKAYPGSGRLD  GMP+G R+
Sbjct:   441 DLPYCGDTKSGPQKGSALHTSFMNKAYPGSGRLDRLGMPIGYRY 484

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=IEP

TAIR|locus:2174088 IQD23 "AT5G62070" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
 Identities = 38/105 (36%), Positives = 46/105 (43%)

Query:   338 PSPSSCEVQSLSPLKFSHEVEDFCTAENSPQFYXXXXXXXXXXXXPFTPTKXXXXX---X 394
             P P   E  + SP K    +    + ENSPQ              PFTPT          
Sbjct:   254 PKPLRSERNNESPRKRQQSLLGPRSTENSPQV----GSSGSRRRTPFTPTSRSEYSWGCN 309

Query:   395 XXXXXXDHPNYMAYTESSRAKVRSLSAPKQRPQYERSSSAKRYSI 439
                    HPNYMA TES +AKVRS SAPKQR +    +S  + S+
Sbjct:   310 NYYYSGYHPNYMANTESYKAKVRSQSAPKQRVEVSNETSGYKRSV 354

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2182920 IQD24 "AT5G07240" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
 Identities = 38/99 (38%), Positives = 46/99 (46%)

Query:   362 TAENSPQFYXXXXXXXXXXX--XPFTPTKXXXXXXXXXXXXDHPNYMAYTESSRAKVRSL 419
             + ENSPQ                PFTP +             HPNYMA TES +AKVRS 
Sbjct:   270 SVENSPQLRSRTGSSSGGSRRKTPFTPARSEYEYYSGY----HPNYMANTESYKAKVRSQ 325

Query:   420 SAPKQRPQ-------YERSSSAKRYSIHTFAESKSSAQR 451
             SAP+QR Q       Y+RS   + Y  +T A  +S  QR
Sbjct:   326 SAPRQRLQDLPSESGYKRSIQGQYY-YYTPAAERSFDQR 363

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088319 IQD26 "AT3G16490" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 6.7e-12, Sum P(4) = 6.7e-12
 Identities = 30/83 (36%), Positives = 39/83 (46%)

Query:   353 FSHEVEDFCTAENSPQFYXXXXXXXXXXXXPFTPTKXXXXXXXXXXXXDH---PNYMAYT 409
             F  E   F TA+N+P+F             P +P K                 P+YMA T
Sbjct:   256 FPGEKCKFPTAQNTPRFSSSMANNNYYYTPP-SPAKSVCRDACFRPSYPGLMTPSYMANT 314

Query:   410 ESSRAKVRSLSAPKQRPQYERSS 432
             +S +AKVRS SAP+QRP  +R S
Sbjct:   315 QSFKAKVRSHSAPRQRPDRKRLS 337

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2130200 IQD19 "AT4G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
 Identities = 40/114 (35%), Positives = 53/114 (46%)

Query:   330 DSTAHQTEPSPSSCEVQSLSPLKFSHEVED---FCTAENSPQFYXXXXXXXXXXXXPFTP 386
             D  +    P+PS+  +  +SP  +S   ED   F TA++SPQ +             F  
Sbjct:   204 DIQSKMYSPAPSA--LTEMSPRAYSSHFEDCNSFNTAQSSPQCFSR-----------FKE 250

Query:   387 TKXXXXXXXXXXXXDHPNYMAYTESSRAKVRSLSAPKQRPQ--YERSSSAKRYS 438
                             PNYMA T+SS+AK RS SAPKQRP   YE+  S +R S
Sbjct:   251 YYNGDTLSSYDYPL-FPNYMANTQSSKAKARSQSAPKQRPPEIYEKQMSGRRRS 303

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2119951 IQD25 "AT4G29150" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query:   405 YMAYTESSRAKVRSLSAPKQRPQYERSSSAKRYSI 439
             YMA T S RAK+RS SAP+QRP+   S+   R SI
Sbjct:   335 YMADTTSFRAKLRSHSAPRQRPESNASAGGWRRSI 369

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 6.6e-05, Sum P(3) = 6.6e-05
 Identities = 53/231 (22%), Positives = 89/231 (38%)

Query:   218 EKFEHSIRSKNSKCEVSSALKKNGSKSNGRVNV--HHEKAHVSW--NWPESQ-MDNR-SK 271
             ++ ++++R + S   +S A      ++ G  +    +E+    W   W  S+  D R S 
Sbjct:   255 QRRDNALR-RESNNSISQAFSHQVRRTRGSYSTGDEYEEERPKWLDRWMASKPWDKRAST 313

Query:   272 NQKAAPTKTGAIDDERSDKILEIDTGKMHFTPKRRNLFHSSHLTVXXXXXXXXXXXXKDS 331
             +Q+  P            K +EIDT + + T        S   +             +  
Sbjct:   314 DQRVPPVY----------KTVEIDTSQPYLTRGNSRTGASPSRSQRPSSPSRTSHHYQQH 363

Query:   332 TAHQTEPSPSSC---EVQSLSPLKFSHEVEDFCTAENSPQFYXXXXXXXXXXXXPFTPTK 388
                   PSP+     +++S SP     +   +    N+P                 T T 
Sbjct:   364 NFSSATPSPAKSRPIQIRSASPRIQRDDRSAYNYTSNTPSLRSNYSFTARSGYSVCTTTT 423

Query:   389 XXXXXXXXXXXXDHPNYMAYTESSRAKVRSLSAPKQRP---QYERSSSAKR 436
                           PNYMA TES++A++RS SAP+QRP   + ER SSA++
Sbjct:   424 TATNAAL-------PNYMAITESAKARIRSQSAPRQRPSTPEKERISSARK 467

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034011 IQD27 "AT1G51960" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00027, Sum P(3) = 0.00027
 Identities = 34/108 (31%), Positives = 44/108 (40%)

Query:   351 LKFSHEVEDFCTAENSPQFYXXXXXXXXXXXXPFTPTKXXXXXXX--XXXXXDHPNYMAY 408
             L FS E   F TA+N+P+                +P K                P YM  
Sbjct:   238 LCFSDEKWKFATAQNTPRLLHHHSANNRYYVMQ-SPAKSVGGKALCDYESSVSTPGYMEK 296

Query:   409 TESSRAKVRSLSAPKQRPQYERSSSAKRYSIHTFAESKSSAQRFTALH 456
             T+S +AKVRS SAP+QR      S  +R S+     SKSS    +  H
Sbjct:   297 TKSFKAKVRSHSAPRQR------SERQRLSLDEVMASKSSVSGVSMSH 338

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	481
pfam13178	105	pfam13178, DUF4005, Protein of unknown function (D	1e-14
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	1e-04
smart00015	23	smart00015, IQ, Calmodulin-binding motif	1e-04

>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005)

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 365 NSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQ 424
           N+P+  S+SS   S       PTKS    +  +     PNYMA TES++AKVRS SAP+Q
Sbjct: 1   NTPRLLSSSSSKSSRSSPSN-PTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQ 59

Query: 425 RPQYER----SSSAKRYSIHTFAESKSS 448
           RP+ E     SS+ KR S+   + S  S
Sbjct: 60  RPETEERESGSSATKRLSLPVSSSSGGS 87

This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 13/19 (68%), Positives = 17/19 (89%)

Query: 133 AAIKIQSAFRGYLARRALR 151
           AAIKIQ+A+RGYLAR+  +
Sbjct: 3   AAIKIQAAWRGYLARKRYK 21

Calmodulin-binding motif. Length = 21

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 133 AAIKIQSAFRGYLARRALR 151
           AAI IQ+A+RGYLAR+  +
Sbjct: 5   AAIIIQAAWRGYLARKRYK 23

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	481
PF13178	102	DUF4005: Protein of unknown function (DUF4005)	99.58
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.91
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.84
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.42
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.79
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	96.62
PTZ00014	821	myosin-A; Provisional	96.54
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	96.27
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	95.23
KOG2128	1401	consensus Ras GTPase-activating protein family - I	94.18
COG5022	1463	Myosin heavy chain [Cytoskeleton]	92.44
smart00015	26	IQ Short calmodulin-binding motif containing conse	92.19
PTZ00014	821	myosin-A; Provisional	92.03
KOG4427	1096	consensus E3 ubiquitin protein ligase [Posttransla	86.87
KOG0520	975	consensus Uncharacterized conserved protein, conta	85.11

>PF13178 DUF4005: Protein of unknown function (DUF4005)

Probab=99.58  E-value=1.6e-15  Score=131.69  Aligned_cols=77  Identities=51%  Similarity=0.618  Sum_probs=55.0

Q ss_pred             CCCccccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCcccccccccccccCCCCCCCCcc----ccCCCccccCcc
Q 011616          365 NSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQRPQY----ERSSSAKRYSIH  440 (481)
Q Consensus       365 ~sP~~~s~ss~~~~~rr~~~t~~~~~~~~~~~~~~~~~P~YMa~TeS~kAK~RsqsaPkqrp~~----e~~~s~~r~S~~  440 (481)
                      |||++++..+..... ....++.+.++.+..+.   .+|||||+|||||||+|+||+|||||+.    ++...+||+||+
T Consensus         1 nsPr~~s~~~~~~~~-~~~~s~~~~~~~~~s~~---~~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~   76 (102)
T PF13178_consen    1 NSPRLRSASSRSSSS-PSRSSPQKSSCRRSSFG---SLPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLP   76 (102)
T ss_pred             CCCCccCcccCCCCC-cccCCCcccccccCcCC---CCCCccchhhhhhhhhhccCCcccCCCccccccccccccccccC
Confidence            578876655443321 22334445555554444   2999999999999999999999999984    567788999999


Q ss_pred             cCCCC
Q 011616          441 TFAES  445 (481)
Q Consensus       441 ~~~~~  445 (481)
                      +....
T Consensus        77 ~~~~~   81 (102)
T PF13178_consen   77 GSSNS   81 (102)
T ss_pred             CCCCC
Confidence            86543

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.91  E-value=1.3e-05  Score=50.66  Aligned_cols=21  Identities=57%  Similarity=0.822  Sum_probs=18.9

Q ss_pred             hhHHHHHHHHHhhHHHHHHHH
Q 011616          131 EPAAIKIQSAFRGYLARRALR  151 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~  151 (481)
                      ..|||+||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999885

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.84  E-value=3.8e-05  Score=87.61  Aligned_cols=66  Identities=32%  Similarity=0.393  Sum_probs=57.1

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616          130 DEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES  199 (481)
Q Consensus       130 e~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e  199 (481)
                      ...+++.||+.||||+.|+.|..+| +++.||+++||.++|+   ..+ ...|++.||..+|++..|+.|.
T Consensus       672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~y~  738 (862)
T KOG0160|consen  672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRRYR  738 (862)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHHHH
Confidence            3457888999999999999999999 8999999999999999   223 5678888999999999888775

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.42  E-value=0.00014  Score=48.08  Aligned_cols=22  Identities=55%  Similarity=0.765  Sum_probs=20.0

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHH
Q 011616          130 DEPAAIKIQSAFRGYLARRALR  151 (481)
Q Consensus       130 e~~AAi~IQsafRGylaRr~~~  151 (481)
                      ++.+|++||+.||||++|+.|.
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999999984

Calmodulin-binding motif.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.79  E-value=0.00081  Score=77.48  Aligned_cols=74  Identities=28%  Similarity=0.300  Sum_probs=59.0

Q ss_pred             CcchhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhc
Q 011616          127 GTLDEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQ-------RMQALLRAQARARAGRAQISE  198 (481)
Q Consensus       127 ~~re~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~-------~~~a~v~iQs~~R~~~~R~~~  198 (481)
                      ......||..||.-||||+.|+.|..++ -+|+||+.+||+.+|++|.....       -+.++-++|+-+|++..+...
T Consensus       806 ~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~  885 (975)
T KOG0520|consen  806 DRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALF  885 (975)
T ss_pred             cccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccch
Confidence            3455678999999999999999999999 89999999999999999985443       334455567777777666655


Q ss_pred             cc
Q 011616          199 SS  200 (481)
Q Consensus       199 e~  200 (481)
                      |.
T Consensus       886 e~  887 (975)
T KOG0520|consen  886 EE  887 (975)
T ss_pred             hc
Confidence            53

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=96.62  E-value=0.0052  Score=70.68  Aligned_cols=66  Identities=29%  Similarity=0.260  Sum_probs=55.4

Q ss_pred             cchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011616          128 TLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQI  196 (481)
Q Consensus       128 ~re~~AAi~IQsafRGylaRr~~~~lr~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~  196 (481)
                      .+...+++.||+.+||+++|+......+.|.||..+|+++.|++|...   ..+++.+|+.+|+..+|.
T Consensus       693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence            456789999999999999998333333899999999999999999443   468888999999999988

>PTZ00014 myosin-A; Provisional

Probab=96.54  E-value=0.0032  Score=72.53  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHH
Q 011616          133 AAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       133 AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~  172 (481)
                      .++.||++||||++|+.|..++ +++.||+.+||+++++..
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6788999999999999998888 889999999999988753

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=96.27  E-value=0.014  Score=65.51  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011616          131 EPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISESSH  201 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e~~  201 (481)
                      -.-++.||++||||++|..|+.|| +++.|+ .+|.+.++-          .+..||.++|+.+.++-+...
T Consensus       696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~ygk~  756 (1001)
T KOG0164|consen  696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRDYGKS  756 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhccccCCC
Confidence            346899999999999999999999 555556 555333322          334589999999988877643

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=95.23  E-value=0.024  Score=35.66  Aligned_cols=18  Identities=33%  Similarity=0.493  Sum_probs=15.9

Q ss_pred             HHHHHHHHhhhhHHHHHH
Q 011616          155 GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       155 ~lv~LQalvRG~lvRrq~  172 (481)
                      ++|.||+.+||+++|+++
T Consensus         3 aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    3 AAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            678899999999999886

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=94.18  E-value=0.12  Score=61.92  Aligned_cols=73  Identities=23%  Similarity=0.341  Sum_probs=58.8

Q ss_pred             hhhHHHHHHHHHhhHHH----HHHHHHHH-HHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccc
Q 011616          130 DEPAAIKIQSAFRGYLA----RRALRALR-GLVRLQALVRGHIERKRTAEW----LQRMQALLRAQARARAGRAQISESS  200 (481)
Q Consensus       130 e~~AAi~IQsafRGyla----Rr~~~~lr-~lv~LQalvRG~lvRrq~~~~----l~~~~a~v~iQs~~R~~~~R~~~e~  200 (481)
                      ..-..+.||.++|||+.    ...+...+ -+|.+|++.||+++|+.+...    ..+|...++||+.+|+...|..+..
T Consensus       564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~  643 (1401)
T KOG2128|consen  564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL  643 (1401)
T ss_pred             cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence            56678999999999994    22222222 799999999999999988744    4499999999999999999998875


Q ss_pred             cc
Q 011616          201 HS  202 (481)
Q Consensus       201 ~~  202 (481)
                      ..
T Consensus       644 L~  645 (1401)
T KOG2128|consen  644 LF  645 (1401)
T ss_pred             Hh
Confidence            43

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=92.44  E-value=0.25  Score=59.50  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=32.7

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHH
Q 011616          130 DEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTA  173 (481)
Q Consensus       130 e~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~  173 (481)
                      -...++.||++|||++.|++|.+-. .+..+|.+.+|.++|+.+.
T Consensus       744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~  788 (1463)
T COG5022         744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVD  788 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence            3568999999999999998876655 6666677777766665443

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=92.19  E-value=0.14  Score=33.69  Aligned_cols=19  Identities=42%  Similarity=0.552  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhhhhHHHHHH
Q 011616          154 RGLVRLQALVRGHIERKRT  172 (481)
Q Consensus       154 r~lv~LQalvRG~lvRrq~  172 (481)
                      +.++.||+.+||+++|+++
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3788999999999999987

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=92.03  E-value=0.37  Score=56.03  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=34.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011616          155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQIS  197 (481)
Q Consensus       155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~  197 (481)
                      .++.||+.+||++.|+++..   ..++++.||+.+|++..++.
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~~  818 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIAE  818 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence            46788999999999999844   46799999999999988754

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.87  E-value=0.77  Score=52.45  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             cchhhHHHHHHHHHhhHHHHHHHH
Q 011616          128 TLDEPAAIKIQSAFRGYLARRALR  151 (481)
Q Consensus       128 ~re~~AAi~IQsafRGylaRr~~~  151 (481)
                      .|++.||+.||..+|||++|+.++
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~~   50 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKAQ   50 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999987

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=85.11  E-value=0.8  Score=53.71  Aligned_cols=64  Identities=30%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHH-H--H--------HHHHHHhhhhHHHHHHH----------------------HHHHH
Q 011616          132 PAAIKIQSAFRGYLARRALRALR-G--L--------VRLQALVRGHIERKRTA----------------------EWLQR  178 (481)
Q Consensus       132 ~AAi~IQsafRGylaRr~~~~lr-~--l--------v~LQalvRG~lvRrq~~----------------------~~l~~  178 (481)
                      .=+|+||+++|||-.|+.|..|- +  +        -++|.-+||+..|..+.                      ...+-
T Consensus       834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~  913 (975)
T KOG0520|consen  834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL  913 (975)
T ss_pred             CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999998876 2  1        12488888887764221                      12233


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011616          179 MQALLRAQARARAGRAQ  195 (481)
Q Consensus       179 ~~a~v~iQs~~R~~~~R  195 (481)
                      -+|+++||+.+|...++
T Consensus       914 ~~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  914 TRAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHHhcCHHHH
Confidence            47889999999888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	481
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	7e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-06
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	8e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	5e-04

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 133 AAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQA 181
           A I+IQ   RG+L R+    ++   + +Q  VRG+  R   A++L+R +A
Sbjct: 7   ACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCY-AKFLRRTKA 55

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 133 AAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARA 191
           A I+IQ   RG+L R+    +R   + +Q  VRGH  R   A +L+R +A +  Q   R 
Sbjct: 770 ACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCY-ATFLRRTRAAIIIQKFQRM 828

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 133 AAIKIQSAFRGYLARRALRALR---GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARA 189
           AAI IQ   RG+ AR     LR     + +Q   R ++ RKR  + ++     L+A  R 
Sbjct: 793 AAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKR-YQCMRDATIALQALLRG 851

Query: 190 RAGRAQISE 198
              R +   
Sbjct: 852 YLVRNKYQM 860

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 131 EPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARA 189
             AAI IQ   R Y+ R+  + +R   + LQAL+RG++ R +  + + R    +  Q   
Sbjct: 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNK-YQMMLREHKSIIIQKHV 874

Query: 190 RAGRAQISE 198
           R   A++  
Sbjct: 875 RGWLARVHY 883

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 135 IKIQSAFRGYLARRA----LRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARAR 190
            +     +    ++A          +  +Q+ +  H E K+  E   + Q +   +A   
Sbjct: 765 KRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK-TEKPPKGQEVSELEAIYN 823

Query: 191 AGRA 194
           + + 
Sbjct: 824 SLQT 827

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 5/72 (6%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 133 AAIKIQSAFRGYLARRALRALR---GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARA 189
           +   +QS    +   +          +  L+A+      + R  +    +          
Sbjct: 789 SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEI 848

Query: 190 RAGRAQISESSH 201
            +  + + ++  
Sbjct: 849 DSTWSALEKAEQ 860

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 133 AAIKIQSAFRGYLARRALRALR----GLVRLQALVRGHIERKRTAEWLQ---RMQALL 183
                Q+  RGYL R+A + L+    GL  +Q  +R  +  +   +W +   +++ LL
Sbjct: 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN-WQWWKLYSKVKPLL 837

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 133 AAIKIQSAFRGYLARRALRALR----GLVRLQALVRGHIERKRTAEWLQRMQALLRAQAR 188
             I  Q+  RGYLAR+A    +     +  +Q  VR  +       W+     +      
Sbjct: 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH-WPWMXLFFXIXPLLKV 852

Query: 189 ARAGRA 194
            R    
Sbjct: 853 TRQEEE 858

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 133 AAIKIQSAFRGYLARRALR----------ALRGLVRLQALVRGHIERKRTAEWLQRMQAL 182
              K     R     + +               +  +Q+ +  H E K+T +   + Q +
Sbjct: 765 EQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP-PKGQEV 823

Query: 183 LRAQARARAGRAQI 196
              +A   + + ++
Sbjct: 824 SELEAIYNSLQTKL 837

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 56/410 (13%), Positives = 111/410 (27%), Gaps = 161/410 (39%)

Query: 160 QALVRGHIERKRTAEWLQRMQALLRAQARAR------AGRAQISESSHSSGKS------- 206
           Q   + ++ R +    L+  QALL  +           G          SGK+       
Sbjct: 124 QVFAKYNVSRLQPYLKLR--QALLELRPAKNVLIDGVLG----------SGKTWVALDVC 171

Query: 207 -SHFQQPGPPTPEKFE-H--SIRSKNSKCEV-------SSALKKNGSK-----SNGRVNV 250
            S+  Q        F+    ++++ NS   V          +  N +      SN ++ +
Sbjct: 172 LSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 251 HHEKAHVS-----WNWPESQMDNRSKNQKAAPTKTGAIDDERSDKILE-IDTG-KMHFTP 303
           H  +A +        +    +                + + ++ K     +   K+  T 
Sbjct: 228 HSIQAELRRLLKSKPYENCLLV---------------LLNVQNAKAWNAFNLSCKILLTT 272

Query: 304 KRRNLF------HSSHLTVSSDHYSHSFTSSKD--------STAHQTEPSPSSCEVQSLS 349
           + + +        ++H  +S DH+S + T  +             Q  P     EV + +
Sbjct: 273 RFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTN 326

Query: 350 PLKFSHEVEDFCTAENSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYT 409
           P + S                + S R G                        H N    T
Sbjct: 327 PRRLS--------------IIAESIRDGL----------------ATWDNWKHVNCDKLT 356

Query: 410 ESSRAKVRSLSAPKQRPQYE------------------------------------RSSS 433
               + +  L   + R  ++                                    + S 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 434 AKR------YSIHT-FAESKSSAQRFTALHANFTNKAYPGSGRLDSFGMP 476
            ++       SI + + E K   +   ALH +  +  Y      DS  + 
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLI 465

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 38/140 (27%)

Query: 63   TRADDTPSSECEDANKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTSNSGRCGNFPSAYV 122
             R  D      E        V   +  +    V A          +  S     F     
Sbjct: 1409 NRNADNVDKILEQFEY----VLYPSKTLKTDGVRAV---------SITS-----F----- 1445

Query: 123  GGFGGT-----LDEP----AAIKIQSAFRGYLARRALRALRGLVRLQALVRGH--IERKR 171
             GFG       +  P     AI  +  +  Y+A+ + R           +  +     K 
Sbjct: 1446 -GFGQKGGQAIVVHPDYLYGAIT-EDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKE 1503

Query: 172  TAEWLQRMQA--LLRAQARA 189
             A +   ++    L   AR 
Sbjct: 1504 HAPYTDELEEDVYLDPLARV 1523

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	481
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.14
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.88
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.78
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.76
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.28
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.73
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	97.66
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.66
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.48
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.46
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.42
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.33
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.95
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.96
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.73
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	94.4
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	90.71
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	90.32
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	88.46

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.14  E-value=6.7e-11  Score=90.95  Aligned_cols=53  Identities=26%  Similarity=0.341  Sum_probs=46.5

Q ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 011616          129 LDEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQAL  182 (481)
Q Consensus       129 re~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~  182 (481)
                      +.+.|||.||+.||||++|+.|..++ ++|.||+.+||+++|+.+..... ..|+
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~-~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRR-TKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCc
Confidence            56889999999999999999999999 99999999999999999965443 3443

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.88  E-value=3.3e-09  Score=78.34  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=38.3

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhhhHHHHHH
Q 011616          131 EPAAIKIQSAFRGYLARRALRALR---GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~lr---~lv~LQalvRG~lvRrq~  172 (481)
                      ..|||.||+.||||++|+.|..++   ++|.||+.+||+++|+.+
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            468999999999999999999887   899999999999999876

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.78  E-value=1.1e-08  Score=118.01  Aligned_cols=68  Identities=29%  Similarity=0.423  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616          131 EPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES  199 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e  199 (481)
                      ..||++||+.||||++|+.|+.++ +++.||+.+||+++|+++. .++...|++.||+.||++++|+.+.
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y~  836 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRYQ  836 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHHH
Confidence            569999999999999999999999 9999999999999999985 4567789999999999999998775

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.76  E-value=9e-09  Score=118.83  Aligned_cols=71  Identities=28%  Similarity=0.329  Sum_probs=60.7

Q ss_pred             cchhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616          128 TLDEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES  199 (481)
Q Consensus       128 ~re~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e  199 (481)
                      +++..||++||+.||||++|+.|..++ ++|.||+.+||+++|+++.. ++...+++.||+.+|++.+|+.+.
T Consensus       813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~y~  884 (1080)
T 2dfs_A          813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVHYH  884 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHHTT
T ss_pred             cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999 99999999999999998854 444567788888888888887764

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.3e-06  Score=64.34  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011616          155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISE  198 (481)
Q Consensus       155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~  198 (481)
                      ++|.||+.+||+++|+++.. ++...|++.||+.+||+.+|..+
T Consensus         5 a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            5 AIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence            78999999999999999954 45567999999999999998754

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.73  E-value=1.4e-05  Score=54.57  Aligned_cols=24  Identities=42%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             cchhhHHHHHHHHHhhHHHHHHHH
Q 011616          128 TLDEPAAIKIQSAFRGYLARRALR  151 (481)
Q Consensus       128 ~re~~AAi~IQsafRGylaRr~~~  151 (481)
                      .+||.+|++||.+||+||.|+.+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Confidence            579999999999999999998743

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=97.66  E-value=6.7e-05  Score=57.21  Aligned_cols=42  Identities=26%  Similarity=0.305  Sum_probs=37.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616          155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES  199 (481)
Q Consensus       155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e  199 (481)
                      ++|.||+.+||+++|+.|...   ..+++.||+.+||+.+|+.+.
T Consensus         7 aai~IQ~~~Rg~~~Rk~~~~~---r~aai~IQ~~~Rg~~aR~~~~   48 (58)
T 2ix7_C            7 ACIRIQKTIRGWLLRKRYLCM---QRAAITVQRYVRGYQARCYAK   48 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999443   368999999999999998765

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.66  E-value=1.9e-05  Score=52.34  Aligned_cols=22  Identities=41%  Similarity=0.620  Sum_probs=19.9

Q ss_pred             cchhhHHHHHHHHHhhHHHHHH
Q 011616          128 TLDEPAAIKIQSAFRGYLARRA  149 (481)
Q Consensus       128 ~re~~AAi~IQsafRGylaRr~  149 (481)
                      .+||.||++||.+||+||.|+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            5789999999999999999864

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.48  E-value=0.00027  Score=55.02  Aligned_cols=43  Identities=21%  Similarity=0.096  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011616          155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQIS  197 (481)
Q Consensus       155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~  197 (481)
                      .++.||+.+||+++|+.+...+...+|+..||..+|++..++.
T Consensus         8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3455555555555555555555555555556666666555443

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.46  E-value=0.00018  Score=55.91  Aligned_cols=44  Identities=23%  Similarity=0.070  Sum_probs=28.9

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011616          155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISE  198 (481)
Q Consensus       155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~  198 (481)
                      .++.||+.+||+++|+.+...+...+|+..||..+|++..++.+
T Consensus         6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            35666666666666666666666666666677777777665543

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.42  E-value=0.00022  Score=55.54  Aligned_cols=44  Identities=30%  Similarity=0.382  Sum_probs=38.6

Q ss_pred             chhhHHHHHHHHHhhHHHHHHHHHH---H-HHHHHHHHhhhhHHHHHH
Q 011616          129 LDEPAAIKIQSAFRGYLARRALRAL---R-GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       129 re~~AAi~IQsafRGylaRr~~~~l---r-~lv~LQalvRG~lvRrq~  172 (481)
                      +-...++.||+..||||+|+.|..+   + ++..||.-+|+++.++..
T Consensus         4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w   51 (64)
T 1wdc_A            4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW   51 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            4456789999999999999999999   4 788999999999998754

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.33  E-value=0.00027  Score=54.96  Aligned_cols=42  Identities=24%  Similarity=0.290  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHH---H-HHHHHHHHhhhhHHHHHH
Q 011616          131 EPAAIKIQSAFRGYLARRALRAL---R-GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~l---r-~lv~LQalvRG~lvRrq~  172 (481)
                      ...++.||+..|||++|+.|..+   + ++..||.-+|+++.++..
T Consensus         4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            45689999999999999999999   4 777999999999998754

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.95  E-value=0.00071  Score=76.46  Aligned_cols=41  Identities=32%  Similarity=0.459  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHH---H-HHHHHHHHhhhhHHHHHH
Q 011616          132 PAAIKIQSAFRGYLARRALRAL---R-GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       132 ~AAi~IQsafRGylaRr~~~~l---r-~lv~LQalvRG~lvRrq~  172 (481)
                      .+|+.||+.|||||+|+.|+.+   | +++.||..+||+++||..
T Consensus       780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            4677888888888888888777   3 677777777777777754

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.04  E-value=0.012  Score=66.52  Aligned_cols=55  Identities=20%  Similarity=0.061  Sum_probs=44.7

Q ss_pred             HHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616          145 LARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES  199 (481)
Q Consensus       145 laRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e  199 (481)
                      |....-..|. .++.||+.+||++.|+++...+....|++.||+.+|++..++.+.
T Consensus       770 LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~  825 (837)
T 1kk8_A          770 LEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ  825 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence            3333333344 688999999999999999888777899999999999999987764

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.96  E-value=0.0062  Score=71.07  Aligned_cols=40  Identities=30%  Similarity=0.440  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHhhhhHHHHH
Q 011616          132 PAAIKIQSAFRGYLARRALRALR----GLVRLQALVRGHIERKR  171 (481)
Q Consensus       132 ~AAi~IQsafRGylaRr~~~~lr----~lv~LQalvRG~lvRrq  171 (481)
                      .+++.||+.||||++|+.|..++    +++.||+.+||++.||.
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57899999999999999999885    89999999999999875

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.73  E-value=0.053  Score=63.26  Aligned_cols=55  Identities=20%  Similarity=0.164  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011616          144 YLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISE  198 (481)
Q Consensus       144 ylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~  198 (481)
                      +|....-..|. .++.||+.+||++.|+.+...+....|++.||+.+|++..++.+
T Consensus       782 ~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          782 HLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444444 68899999999999999988888889999999999999988765

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=94.40  E-value=0.044  Score=49.83  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=26.8

Q ss_pred             chhhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHh
Q 011616          129 LDEPAAIKIQSAFRGYLARRALRAL-RGLVRLQALV  163 (481)
Q Consensus       129 re~~AAi~IQsafRGylaRr~~~~l-r~lv~LQalv  163 (481)
                      =+..|+|+||+.+||||+|+.++-= .|++++.+|.
T Consensus        43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3577899999999999999988632 3777766653

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=90.71  E-value=0.15  Score=47.27  Aligned_cols=26  Identities=38%  Similarity=0.506  Sum_probs=22.3

Q ss_pred             CcchhhHHHHHHHHHhhHHHHHHHHH
Q 011616          127 GTLDEPAAIKIQSAFRGYLARRALRA  152 (481)
Q Consensus       127 ~~re~~AAi~IQsafRGylaRr~~~~  152 (481)
                      ..+|+.||+.||.+||.|+.|+.+..
T Consensus       126 ~~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          126 RKHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc
Confidence            35789999999999999999887654

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=90.32  E-value=0.41  Score=55.45  Aligned_cols=42  Identities=10%  Similarity=0.056  Sum_probs=34.0

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHH
Q 011616          130 DEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       130 e~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~  172 (481)
                      ...+|+.||. +||||+|+.|+.++ +.+.+|.+.|+...|+..
T Consensus       774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~  816 (1052)
T 4anj_A          774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA  816 (1052)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4567777775 79999999999999 888899888887766644

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=88.46  E-value=0.25  Score=55.64  Aligned_cols=24  Identities=38%  Similarity=0.689  Sum_probs=20.8

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH
Q 011616          131 EPAAIKIQSAFRGYLARRALRALR  154 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~lr  154 (481)
                      ..+|+.||++|||||+|+.|+.+|
T Consensus       768 ~~~~~~iQ~~~Rg~l~R~~~~~~r  791 (795)
T 1w7j_A          768 RAACIRIQKTIRGWLMRKKYMRMR  791 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999998887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	481
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	3e-08
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	1e-06

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 133 AAIKIQSAFRGYLARRALRAL----RGLVRLQALVRGHIERKRTAEW--LQRMQALLR 184
                Q+  RG+L R   RA+      +  +Q  VR  +  K         +++ LL+
Sbjct: 737 IITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 133 AAIKIQSAFRGYLARRALRALR----GLVRLQALVRGHIERKRTAEW--LQRMQALL 183
                Q+  RGYL R+A + L+    GL  +Q  +R  +  +    W    +++ LL
Sbjct: 733 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 789

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	481
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.31
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.23
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.53
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	95.91
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	91.13

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.31  E-value=7.2e-05  Score=81.32  Aligned_cols=42  Identities=29%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHhhhhHHHHHH
Q 011616          131 EPAAIKIQSAFRGYLARRALRALR----GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~lr----~lv~LQalvRG~lvRrq~  172 (481)
                      ..+|+.||+.||||++|+.|+.+|    +++.||..+||+++||.+
T Consensus       731 ~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            558999999999999999999988    688899999999999876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.23  E-value=0.00012  Score=79.55  Aligned_cols=42  Identities=29%  Similarity=0.376  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHH---H-HHHHHHHHhhhhHHHHHH
Q 011616          131 EPAAIKIQSAFRGYLARRALRAL---R-GLVRLQALVRGHIERKRT  172 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~l---r-~lv~LQalvRG~lvRrq~  172 (481)
                      ..+|+.||+.||||++|+.|+.+   | +++.||+.+||+++||.+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            35788999999999999988877   3 788888888888888876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.53  E-value=0.0021  Score=69.53  Aligned_cols=57  Identities=19%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616          143 GYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES  199 (481)
Q Consensus       143 GylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e  199 (481)
                      .+|....-..+. .++.||+.+||+++|+++...+....|++.||+.+|+++.|+.|.
T Consensus       724 ~~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~  781 (794)
T d2mysa2         724 GLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWP  781 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            344444444444 788999999999999999888888889999999999999887654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=95.91  E-value=0.0068  Score=65.41  Aligned_cols=45  Identities=20%  Similarity=0.062  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616          155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES  199 (481)
Q Consensus       155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e  199 (481)
                      .++.||+.+||+++||++........+++.||+.+|++.+|+.+.
T Consensus       733 ~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~~  777 (789)
T d1kk8a2         733 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ  777 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            678899999999999999776666678999999999999987753

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.13  E-value=0.054  Score=57.57  Aligned_cols=24  Identities=38%  Similarity=0.689  Sum_probs=18.2

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH
Q 011616          131 EPAAIKIQSAFRGYLARRALRALR  154 (481)
Q Consensus       131 ~~AAi~IQsafRGylaRr~~~~lr  154 (481)
                      ..+||+||+.||||++||.|..+|
T Consensus       706 ~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         706 RAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            347788888888888888887665