Citrus Sinensis ID: 011629

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-

MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPPRRQIGTILW

cHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccEEccccccEEEccccccccccEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccEEEcccccccccccEEEccccccEEEcccccccccccccccccccccEEEEHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEcccccccccEEEEEEcccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccc

cHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHccccccEEEEEEcccHHHccccccccccHHHHHccEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccHHHHHHHHHccEccccEEEEEcccccEccccEEEEEEcccccEEEEEEcccccEEEEcccccccccccccccccccEEEEEccccccccccEEEcccccEEEEEccccccHHHHEEcccccccEEEEHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHcccccEEEEEEEEEEEcEEEEEccccHHcccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccEEEEEEc

MAAIADIVDYFGWRNVIALYvdddhgrngIAALGDKLAEKRcrlshkvplspkgsrnqIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTrrntlngpiglnsfglyAYDTLWLLAHAIGAffdqggnisfsedsklselsrgdmrfssvsifnggkMLLDNILQvnmtgvtgpikftsdrdlinpaYEVINVIgtgsrrigywsnhsglsvvppealykepsnrsassqhlysavwpgqttqkprgwvfpnngrhlrigvpsqviypefvaqgkgtdkfsgyCIDVFTAVLELlpyavpyklvpfgdghnspkrfDLLRLVSEEvydaavgdfaittertkmvdftqpyiesglVVVAPIKklnsnawaflnpftpkmwcvTGIFFLVVGVVVWILEHrlnddfrgpprrqigtilw

MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLShkvplspkgsrnqiIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMytqsseekrkfvtrwrhltrrntlngpiglNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIkftsdrdlinpAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEhrlnddfrgpprrqigtilw

***IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH**********NQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLH**KMDDIQGVLTLRMYTQ****KRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF**************RFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVV******************LYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDF*************

MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSP**S**QIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWR*********GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNI***********************FNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEA*********ASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPPRRQIGTILW

MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEAL**************YSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPPRRQIGTILW

MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEAL*******S*SSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPPRRQIGTILW

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		481	2.2.26 [Sep-21-2011]
Q84W41		903	Glutamate receptor 3.6 OS	yes	no	0.975	0.519	0.561	1e-164
Q93YT1		912	Glutamate receptor 3.2 OS	no	no	0.989	0.521	0.534	1e-155
Q9C8E7		933	Glutamate receptor 3.3 OS	no	no	0.989	0.510	0.531	1e-152
Q7XP59		938	Glutamate receptor 3.1 OS	yes	no	1.0	0.512	0.498	1e-152
Q8GXJ4		959	Glutamate receptor 3.4 OS	no	no	0.987	0.495	0.517	1e-148
Q9SW97		953	Glutamate receptor 3.5 OS	no	no	1.0	0.504	0.496	1e-147
Q7XJL2		921	Glutamate receptor 3.1 OS	no	no	0.987	0.515	0.508	1e-147
Q9SDQ4		921	Glutamate receptor 3.7 OS	no	no	0.972	0.508	0.419	1e-110
Q8LGN0		952	Glutamate receptor 2.7 OS	no	no	0.954	0.482	0.331	9e-74
Q9SHV1		920	Glutamate receptor 2.2 OS	no	no	0.952	0.497	0.328	2e-72

>sp\|Q84W41\|GLR36_ARATH Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1	Back alignment and function desciption

 Score =  580 bits (1494), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 270/481 (56%), Positives = 363/481 (75%), Gaps = 12/481 (2%)

Query: 1   MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQII 60
           MAAIADIV ++GWR V+A+Y DDD+GRNG+AALGD+L+EKRCR+S+K  L P  +R  I 
Sbjct: 150 MAAIADIVQFYGWREVVAIYGDDDYGRNGVAALGDRLSEKRCRISYKAALPPAPTRENIT 209

Query: 61  DTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHS 120
           D L+ V+   SRI+++H   IWGLE+ N A++L MM +GYVWI T+WLS+I+DTDS L  
Sbjct: 210 DLLIKVALSESRIIVVHASFIWGLELFNVARNLGMMSTGYVWIATNWLSTIIDTDSPLPL 269

Query: 121 EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAH 180
           + +++IQGV+TLR++T +S  K+ FV RW +LT        +GL+++ LYAYDT+WLLA 
Sbjct: 270 DTINNIQGVITLRLHTPNSIMKQNFVQRWHNLTH-------VGLSTYALYAYDTVWLLAQ 322

Query: 181 AIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKF 240
           AI  FF +GGN+SFS++  +SEL  G++   ++ +F+GGK+ L++ILQV+  G+TG +KF
Sbjct: 323 AIDDFFKKGGNVSFSKNPIISELGGGNLHLDALKVFDGGKIFLESILQVDRIGLTGRMKF 382

Query: 241 TSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVW 300
           TSDR+L+NPA++V+NVIGTG   IGYW NHSGLSV+P +    E  N S S Q L+S VW
Sbjct: 383 TSDRNLVNPAFDVLNVIGTGYTTIGYWFNHSGLSVMPAD----EMENTSFSGQKLHSVVW 438

Query: 301 PGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPY 360
           PG + + PRGWVF NNGRHLRIGVP++  + E V+  K     +G+C+DVF A + LLPY
Sbjct: 439 PGHSIKIPRGWVFSNNGRHLRIGVPNRYRFEEVVSV-KSNGMITGFCVDVFIAAINLLPY 497

Query: 361 AVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVV 420
           AVP++LV FG+GH++P   +L+RL++  VYDA VGD  I TERTKM DFTQPY+ESGLVV
Sbjct: 498 AVPFELVAFGNGHDNPSNSELVRLITTGVYDAGVGDITIITERTKMADFTQPYVESGLVV 557

Query: 421 VAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPPRRQIGTIL 480
           VAP++KL S+A AFL PFTP+MW +    FL+VG V+W LEH+ ND+FRGPPRRQ+ T  
Sbjct: 558 VAPVRKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWCLEHKHNDEFRGPPRRQVITTF 617

Query: 481 W 481
           W
Sbjct: 618 W 618

Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q93YT1\|GLR32_ARATH Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2	Back alignment and function description

>sp\|Q9C8E7\|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1	Back alignment and function description

>sp\|Q7XP59\|GLR31_ORYSJ Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1	Back alignment and function description

>sp\|Q8GXJ4\|GLR34_ARATH Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2	Back alignment and function description

>sp\|Q9SW97\|GLR35_ARATH Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2	Back alignment and function description

>sp\|Q7XJL2\|GLR31_ARATH Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2	Back alignment and function description

>sp\|Q9SDQ4\|GLR37_ARATH Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2	Back alignment and function description

>sp\|Q8LGN0\|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3	Back alignment and function description

>sp\|Q9SHV1\|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		481
225438444		938	PREDICTED: glutamate receptor 3.6-like [	1.0	0.512	0.675	0.0
296082561		936	unnamed protein product [Vitis vinifera]	1.0	0.513	0.675	0.0
255561451		769	glutamate receptor 3 plant, putative [Ri	1.0	0.625	0.650	0.0
224081501		937	glutamate-gated kainate-type ion channel	0.997	0.512	0.668	0.0
224081497		928	glutamate-gated kainate-type ion channel	0.995	0.516	0.669	0.0
127519383		946	glutamate receptor [Malus hupehensis]	1.0	0.508	0.655	0.0
357933583		958	glutamate receptor 3.5 [Solanum lycopers	1.0	0.502	0.611	0.0
356529661		938	PREDICTED: glutamate receptor 3.6-like [	1.0	0.512	0.629	0.0
356559183		907	PREDICTED: glutamate receptor 3.6-like [	1.0	0.530	0.627	0.0
449491245		943	PREDICTED: glutamate receptor 3.6-like [	1.0	0.510	0.621	0.0

>gi\|225438444\|ref\|XP_002276999.1\| PREDICTED: glutamate receptor 3.6-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/481 (67%), Positives = 394/481 (81%)

Query: 1   MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQII 60
           MAAIAD+VDY+GWR VIA+YVDDD+GRNGIAALGD+L +KRC++S+K P+ P+ SR+ I 
Sbjct: 152 MAAIADLVDYYGWREVIAIYVDDDYGRNGIAALGDELTKKRCKISYKAPMYPESSRDDIT 211

Query: 61  DTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHS 120
           D L+ V+   SRIL++HTY  WGLEVL+ A++L M  SGYVWI T+WLS+++DTD+ L S
Sbjct: 212 DVLVKVALTESRILVVHTYTEWGLEVLDVAQYLGMTGSGYVWIATNWLSTVMDTDASLPS 271

Query: 121 EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAH 180
             M++IQGVLTLRMYT +SE K  FV+RW +LT   T N  +GL+++GLYAYDT+W+LAH
Sbjct: 272 NAMNNIQGVLTLRMYTPASELKSNFVSRWSNLTSAGTTNRHVGLSAYGLYAYDTVWVLAH 331

Query: 181 AIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKF 240
           AI AFF+QGG+ISFS DS+L++L  G +   ++SIF+GG +LL +ILQVNMTGVTGPIKF
Sbjct: 332 AINAFFNQGGSISFSNDSRLTKLRGGSLHLDAMSIFDGGNLLLQSILQVNMTGVTGPIKF 391

Query: 241 TSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVW 300
            SD  LI PAYEVINVIGTG RRIGYWSN+SGLSVVPP  LY +P NR++++Q LY A+W
Sbjct: 392 NSDHSLIRPAYEVINVIGTGVRRIGYWSNYSGLSVVPPAMLYTKPPNRTSTNQRLYDAIW 451

Query: 301 PGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPY 360
           PGQ  Q PRGWVFP+NGR L IGVP +V Y EF+++ KGTD F GYCIDVFTA L LLPY
Sbjct: 452 PGQAAQTPRGWVFPSNGRQLIIGVPDRVSYREFISRVKGTDMFKGYCIDVFTAALSLLPY 511

Query: 361 AVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVV 420
           AVPYKLVPFGDG ++P   DL+RL++  VYDAA+GD AI T RT+MVDFTQPYIESGLVV
Sbjct: 512 AVPYKLVPFGDGIHNPSCTDLVRLITTGVYDAAIGDIAIVTNRTRMVDFTQPYIESGLVV 571

Query: 421 VAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPPRRQIGTIL 480
           VAPIK  NSNAWAFL PF+  MW VTG FFL+VG VVWILEHR+ND+FRGPPRRQ  TIL
Sbjct: 572 VAPIKTSNSNAWAFLKPFSKNMWIVTGTFFLLVGAVVWILEHRINDEFRGPPRRQFVTIL 631

Query: 481 W 481
           W
Sbjct: 632 W 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296082561\|emb\|CBI21566.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255561451\|ref\|XP_002521736.1\| glutamate receptor 3 plant, putative [Ricinus communis] gi\|223539127\|gb\|EEF40723.1\| glutamate receptor 3 plant, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224081501\|ref\|XP_002306436.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi\|222855885\|gb\|EEE93432.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224081497\|ref\|XP_002306435.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi\|222855884\|gb\|EEE93431.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|127519383\|gb\|ABO28526.1\| glutamate receptor [Malus hupehensis]	Back alignment and taxonomy information

>gi\|357933583\|dbj\|BAL15058.1\| glutamate receptor 3.5 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|356529661\|ref\|XP_003533407.1\| PREDICTED: glutamate receptor 3.6-like [Glycine max]	Back alignment and taxonomy information

>gi\|356559183\|ref\|XP_003547880.1\| PREDICTED: glutamate receptor 3.6-like [Glycine max]	Back alignment and taxonomy information

>gi\|449491245\|ref\|XP_004158839.1\| PREDICTED: glutamate receptor 3.6-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		481
TAIR\|locus:2081805		903	GLR3.6 "glutamate receptor 3.6	0.975	0.519	0.561	3.7e-151
TAIR\|locus:2122128		912	GLUR2 "glutamate receptor 2" [	0.989	0.521	0.536	9.6e-144
TAIR\|locus:2206095		933	GLR3.3 "glutamate receptor 3.3	0.987	0.509	0.539	1.1e-140
TAIR\|locus:2207165		959	GLR3.4 "AT1G05200" [Arabidopsi	0.987	0.495	0.521	1.5e-136
TAIR\|locus:2062586		921	GLR5 "glutamate receptor 5" [A	0.972	0.508	0.419	2.8e-105
TAIR\|locus:2066107		952	GLR2.7 "glutamate receptor 2.7	0.950	0.480	0.335	4.8e-71
TAIR\|locus:2047251		895	GLR2.3 "glutamate receptor 2.3	0.954	0.512	0.336	4.7e-70
TAIR\|locus:2181196		901	GLR2.1 "glutamate receptor 2.1	0.937	0.500	0.331	1.8e-69
TAIR\|locus:2047256		920	GLR2.2 "glutamate receptor 2.2	0.948	0.495	0.337	2.4e-69
TAIR\|locus:2066086		947	GLR2.8 "glutamate receptor 2.8	0.937	0.476	0.328	1.7e-64

TAIR\|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
 Identities = 270/481 (56%), Positives = 363/481 (75%)

Query:     1 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQII 60
             MAAIADIV ++GWR V+A+Y DDD+GRNG+AALGD+L+EKRCR+S+K  L P  +R  I 
Sbjct:   150 MAAIADIVQFYGWREVVAIYGDDDYGRNGVAALGDRLSEKRCRISYKAALPPAPTRENIT 209

Query:    61 DTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHS 120
             D L+ V+   SRI+++H   IWGLE+ N A++L MM +GYVWI T+WLS+I+DTDS L  
Sbjct:   210 DLLIKVALSESRIIVVHASFIWGLELFNVARNLGMMSTGYVWIATNWLSTIIDTDSPLPL 269

Query:   121 EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAH 180
             + +++IQGV+TLR++T +S  K+ FV RW +LT        +GL+++ LYAYDT+WLLA 
Sbjct:   270 DTINNIQGVITLRLHTPNSIMKQNFVQRWHNLTH-------VGLSTYALYAYDTVWLLAQ 322

Query:   181 AIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKF 240
             AI  FF +GGN+SFS++  +SEL  G++   ++ +F+GGK+ L++ILQV+  G+TG +KF
Sbjct:   323 AIDDFFKKGGNVSFSKNPIISELGGGNLHLDALKVFDGGKIFLESILQVDRIGLTGRMKF 382

Query:   241 TSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVW 300
             TSDR+L+NPA++V+NVIGTG   IGYW NHSGLSV+P +    E  N S S Q L+S VW
Sbjct:   383 TSDRNLVNPAFDVLNVIGTGYTTIGYWFNHSGLSVMPAD----EMENTSFSGQKLHSVVW 438

Query:   301 PGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPY 360
             PG + + PRGWVF NNGRHLRIGVP++  + E V+  K     +G+C+DVF A + LLPY
Sbjct:   439 PGHSIKIPRGWVFSNNGRHLRIGVPNRYRFEEVVSV-KSNGMITGFCVDVFIAAINLLPY 497

Query:   361 AVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVV 420
             AVP++LV FG+GH++P   +L+RL++  VYDA VGD  I TERTKM DFTQPY+ESGLVV
Sbjct:   498 AVPFELVAFGNGHDNPSNSELVRLITTGVYDAGVGDITIITERTKMADFTQPYVESGLVV 557

Query:   421 VAPIKKLNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPPRRQIGTIL 480
             VAP++KL S+A AFL PFTP+MW +    FL+VG V+W LEH+ ND+FRGPPRRQ+ T  
Sbjct:   558 VAPVRKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWCLEHKHNDEFRGPPRRQVITTF 617

Query:   481 W 481
             W
Sbjct:   618 W 618

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=NAS

GO:0009416 "response to light stimulus" evidence=NAS

GO:0030003 "cellular cation homeostasis" evidence=RCA

TAIR\|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2062586 GLR5 "glutamate receptor 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		481
cd06366		350	cd06366, PBP1_GABAb_receptor, Ligand-binding domai	8e-70
pfam01094		343	pfam01094, ANF_receptor, Receptor family ligand bi	3e-46
cd06350		348	cd06350, PBP1_GPCR_family_C_like, Ligand-binding d	5e-30
cd06269		298	cd06269, PBP1_glutamate_receptors_like, Family C G	1e-17
cd06379		377	cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/i	3e-10
cd06362		452	cd06362, PBP1_mGluR, Ligand binding domain of the	3e-10
cd06352		389	cd06352, PBP1_NPR_GC_like, Ligand-binding domain o	5e-10
cd06351		328	cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci	8e-10
COG0834		275	COG0834, HisJ, ABC-type amino acid transport/signa	2e-09
pfam00497		220	pfam00497, SBP_bac_3, Bacterial extracellular solu	2e-09
cd00134		218	cd00134, PBPb, Bacterial periplasmic transport sys	9e-09
cd06380		382	cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole	2e-08
cd06368		324	cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc	2e-08
cd06367		362	cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole	5e-08
smart00062		219	smart00062, PBPb, Bacterial periplasmic substrate-	6e-08
pfam00060		268	pfam00060, Lig_chan, Ligand-gated ion channel	3e-07
cd06376		463	cd06376, PBP1_mGluR_groupIII, Ligand-binding domai	8e-07
cd06382		327	cd06382, PBP1_iGluR_Kainate, N-terminal leucine/is	2e-06
cd04509		299	cd04509, PBP1_ABC_transporter_GCPR_C_like, Family	5e-06
cd06375		458	cd06375, PBP1_mGluR_groupII, Ligand binding domain	4e-04
cd06268		298	cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas	4e-04
cd06392		400	cd06392, PBP1_iGluR_delta_1, N-terminal leucine/is	7e-04
PRK09495		247	PRK09495, glnH, glutamine ABC transporter periplas	7e-04
cd06364		510	cd06364, PBP1_CaSR, Ligand-binding domain of the C	7e-04
cd06388		371	cd06388, PBP1_iGluR_AMPA_GluR4, N-terminal leucine	9e-04

>gnl\|CDD\|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)	Back alignment and domain information

 Score =  225 bits (577), Expect = 8e-70
 Identities = 87/279 (31%), Positives = 127/279 (45%), Gaps = 55/279 (19%)

Query: 1   MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQII 60
             AIA ++  FGWR V  +Y DDD+G  G+  L D L E    +S++    P  + + I 
Sbjct: 123 NPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDIT 182

Query: 61  DTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD-TDSQLH 119
           D L  +    SR++++H        V   A  L MM  GYVWI+TDWLSS    +     
Sbjct: 183 DALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSSDCTD 242

Query: 120 SEKMDDIQGVLTLRMYTQ-SSEEKRKFVTRWRHLTRRNTLNGPI-GLNSFGLYAYDTLWL 177
            E ++ +QGV+ +R Y   SS   ++F +RWR   R    N  +   + + LYAYD +W 
Sbjct: 243 EEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWR--KRFGNENPELTEPSIYALYAYDAVW- 299

Query: 178 LAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGP 237
                                                               N  G++GP
Sbjct: 300 -------------------------------------------------ASTNFNGLSGP 310

Query: 238 IKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVV 276
           ++F   R L +PA+E+IN+IG G R+IG+WS+ SGLSV 
Sbjct: 311 VQFDGGRRLASPAFEIINIIGKGYRKIGFWSSESGLSVF 349

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350

>gnl\|CDD\|216296 pfam01094, ANF_receptor, Receptor family ligand binding region	Back alignment and domain information

>gnl\|CDD\|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)	Back alignment and domain information

>gnl\|CDD\|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors	Back alignment and domain information

>gnl\|CDD\|107374 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor	Back alignment and domain information

>gnl\|CDD\|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR)	Back alignment and domain information

>gnl\|CDD\|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors	Back alignment and domain information

>gnl\|CDD\|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)	Back alignment and domain information

>gnl\|CDD\|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	Back alignment and domain information

>gnl\|CDD\|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions	Back alignment and domain information

>gnl\|CDD\|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor	Back alignment and domain information

>gnl\|CDD\|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors	Back alignment and domain information

>gnl\|CDD\|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors	Back alignment and domain information

>gnl\|CDD\|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins	Back alignment and domain information

>gnl\|CDD\|215685 pfam00060, Lig_chan, Ligand-gated ion channel	Back alignment and domain information

>gnl\|CDD\|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor	Back alignment and domain information

>gnl\|CDD\|107377 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors	Back alignment and domain information

>gnl\|CDD\|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems	Back alignment and domain information

>gnl\|CDD\|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor	Back alignment and domain information

>gnl\|CDD\|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily	Back alignment and domain information

>gnl\|CDD\|107387 cd06392, PBP1_iGluR_delta_1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family	Back alignment and domain information

>gnl\|CDD\|236540 PRK09495, glnH, glutamine ABC transporter periplasmic protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>gnl\|CDD\|107383 cd06388, PBP1_iGluR_AMPA_GluR4, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		481
KOG1054		897	consensus Glutamate-gated AMPA-type ion channel re	100.0
KOG4440		993	consensus NMDA selective glutamate-gated ion chann	100.0
KOG1053		1258	consensus Glutamate-gated NMDA-type ion channel re	100.0
cd06390		364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	100.0
cd06365		469	PBP1_Pheromone_receptor Ligand-binding domain of t	100.0
KOG1052		656	consensus Glutamate-gated kainate-type ion channel	100.0
cd06364		510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	100.0
cd06375		458	PBP1_mGluR_groupII Ligand binding domain of the gr	100.0
cd06387		372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	100.0
cd06376		463	PBP1_mGluR_groupIII Ligand-binding domain of the g	100.0
cd06374		472	PBP1_mGluR_groupI Ligand binding domain of the gro	100.0
cd06379		377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	100.0
KOG1056		878	consensus Glutamate-gated metabotropic ion channel	100.0
cd06392		400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	100.0
cd06362		452	PBP1_mGluR Ligand binding domain of the metabotrop	100.0
cd06391		400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	100.0
cd06367		362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	99.98
cd06389		370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	99.98
cd06388		371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	99.98
cd06361		403	PBP1_GPC6A_like Ligand-binding domain of the promi	99.98
cd06393		384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	99.97
cd06378		362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	99.96
cd06380		382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	99.96
cd06386		387	PBP1_NPR_C_like Ligand-binding domain of type C na	99.95
cd06363		410	PBP1_Taste_receptor Ligand-binding domain of the T	99.95
PF01094		348	ANF_receptor: Receptor family ligand binding regio	99.95
cd06385		405	PBP1_NPR_A Ligand-binding domain of type A natriur	99.94
cd06370		404	PBP1_Speract_GC_like Ligand-binding domain of memb	99.94
cd06372		391	PBP1_GC_G_like Ligand-binding domain of membrane g	99.94
cd06384		399	PBP1_NPR_B Ligand-binding domain of type B natriur	99.93
cd06373		396	PBP1_NPR_like Ligand binding domain of natriuretic	99.93
cd06371		382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	99.93
cd06352		389	PBP1_NPR_GC_like Ligand-binding domain of membrane	99.92
cd06381		363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	99.92
cd06394		333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	99.91
cd06366		350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	99.91
cd06383		368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	99.9
cd06382		327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	99.87
cd06377		382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	99.87
cd06368		324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	99.85
cd06350		348	PBP1_GPCR_family_C_like Ligand-binding domain of m	99.8
cd06342		334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	99.78
KOG1055		865	consensus GABA-B ion channel receptor subunit GABA	99.77
cd06351		328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	99.77
cd06369		380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	99.71
cd06348		344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	99.71
cd06338		345	PBP1_ABC_ligand_binding_like_5 Type I periplasmic	99.7
PRK15404		369	leucine ABC transporter subunit substrate-binding	99.69
cd06345		344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	99.68
cd06346		312	PBP1_ABC_ligand_binding_like_11 Type I periplasmic	99.65
cd06360		336	PBP1_alkylbenzenes_like Type I periplasmic binding	99.62
cd06347		334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	99.61
PRK11917		259	bifunctional adhesin/ABC transporter aspartate/glu	99.57
cd06340		347	PBP1_ABC_ligand_binding_like_6 Type I periplasmic	99.56
cd06355		348	PBP1_FmdD_like Periplasmic component (FmdD) of an	99.56
PRK10797		302	glutamate and aspartate transporter subunit; Provi	99.54
PRK15010		260	ABC transporter lysine/arginine/ornithine binding	99.53
cd06344		332	PBP1_ABC_ligand_binding_like_9 Type I periplasmic	99.52
cd06336		347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	99.52
cd06343		362	PBP1_ABC_ligand_binding_like_8 Type I periplasmic	99.52
PRK09495		247	glnH glutamine ABC transporter periplasmic protein	99.51
cd06269		298	PBP1_glutamate_receptors_like Family C G-protein c	99.51
cd06331		333	PBP1_AmiC_like Type I periplasmic components of am	99.51
PRK15437		259	histidine ABC transporter substrate-binding protei	99.51
cd06359		333	PBP1_Nba_like Type I periplasmic binding component	99.5
cd06349		340	PBP1_ABC_ligand_binding_like_14 Type I periplasmic	99.5
cd06357		360	PBP1_AmiC Periplasmic binding domain of amidase (A	99.49
cd06332		333	PBP1_aromatic_compounds_like Type I periplasmic bi	99.49
PF13458		343	Peripla_BP_6: Periplasmic binding protein; PDB: 4E	99.48
PRK15007		243	putative ABC transporter arginine-biding protein;	99.46
TIGR03407		359	urea_ABC_UrtA urea ABC transporter, urea binding p	99.46
cd06330		346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	99.46
cd06327		334	PBP1_SBP_like_1 Periplasmic solute-binding domain	99.44
PF00497		225	SBP_bac_3: Bacterial extracellular solute-binding	99.44
cd06329		342	PBP1_SBP_like_3 Periplasmic solute-binding domain	99.44
cd06358		333	PBP1_NHase Type I periplasmic-binding protein of t	99.43
TIGR02995		275	ectoine_ehuB ectoine/hydroxyectoine ABC transporte	99.43
TIGR03669		374	urea_ABC_arch urea ABC transporter, substrate-bind	99.43
PRK11260		266	cystine transporter subunit; Provisional	99.42
COG0683		366	LivK ABC-type branched-chain amino acid transport	99.41
TIGR01096		250	3A0103s03R lysine-arginine-ornithine-binding perip	99.38
cd06337		357	PBP1_ABC_ligand_binding_like_4 Type I periplasmic	99.37
cd06335		347	PBP1_ABC_ligand_binding_like_2 Type I periplasmic	99.34
TIGR03870		246	ABC_MoxJ methanol oxidation system protein MoxJ. T	99.34
cd06328		333	PBP1_SBP_like_2 Periplasmic solute-binding domain	99.31
cd06339		336	PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin	99.31
PRK10859		482	membrane-bound lytic transglycosylase F; Provision	99.28
cd06334		351	PBP1_ABC_ligand_binding_like_1 Type I periplasmic	99.25
cd06356		334	PBP1_Amide_Urea_BP_like Periplasmic component (Fmd	99.22
TIGR02285		268	conserved hypothetical protein. Members of this fa	99.16
COG0834		275	HisJ ABC-type amino acid transport/signal transduc	99.14
cd04509		299	PBP1_ABC_transporter_GCPR_C_like Family C of G-pro	99.13
PRK09959		1197	hybrid sensory histidine kinase in two-component r	99.11
cd06326		336	PBP1_STKc_like Type I periplasmic binding domain o	99.11
PRK09959		1197	hybrid sensory histidine kinase in two-component r	99.08
PF13433		363	Peripla_BP_5: Periplasmic binding protein domain;	99.05
TIGR03871		232	ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa	99.04
PF10613		65	Lig_chan-Glu_bd: Ligated ion channel L-glutamate-	99.02
cd06341		341	PBP1_ABC_ligand_binding_like_7 Type I periplasmic	98.98
cd00134		218	PBPb Bacterial periplasmic transport systems use m	98.96
smart00062		219	PBPb Bacterial periplasmic substrate-binding prote	98.89
cd06333		312	PBP1_ABC-type_HAAT_like Type I periplasmic binding	98.88
cd06268		298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	98.76
TIGR03863		347	PQQ_ABC_bind ABC transporter, substrate binding pr	98.62
COG4623		473	Predicted soluble lytic transglycosylase fused to	98.61
cd01391		269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	97.72
TIGR01098		254	3A0109s03R phosphate/phosphite/phosphonate ABC tra	97.38
PF04348		536	LppC: LppC putative lipoprotein; InterPro: IPR0074	96.49
PRK00489		287	hisG ATP phosphoribosyltransferase; Reviewed	96.19
TIGR03431		288	PhnD phosphonate ABC transporter, periplasmic phos	94.95
TIGR02990		239	ectoine_eutA ectoine utilization protein EutA. Mem	93.92
cd06282		266	PBP1_GntR_like_2 Ligand-binding domain of putative	91.11
cd01537		264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	90.81
cd06267		264	PBP1_LacI_sugar_binding_like Ligand binding domain	90.68
PRK09860		383	putative alcohol dehydrogenase; Provisional	90.66
cd01536		267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	89.92
cd08192		370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	89.38
cd06273		268	PBP1_GntR_like_1 This group includes the ligand-bi	89.35
cd08190		414	HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv	89.34
PF00465		366	Fe-ADH: Iron-containing alcohol dehydrogenase ; In	89.34
PRK15454		395	ethanol dehydrogenase EutG; Provisional	88.82
PF13377		160	Peripla_BP_3: Periplasmic binding protein-like dom	88.33
PRK10624		382	L-1,2-propanediol oxidoreductase; Provisional	88.24
cd06298		268	PBP1_CcpA_like Ligand-binding domain of the catabo	88.17
cd08193		376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	88.15
cd08551		370	Fe-ADH iron-containing alcohol dehydrogenases (Fe-	87.82
PF13685		250	Fe-ADH_2: Iron-containing alcohol dehydrogenase; P	87.42
TIGR01729		300	taurine_ABC_bnd taurine ABC transporter, periplasm	87.37
TIGR01481		329	ccpA catabolite control protein A. Catabolite cont	87.35
cd08194		375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	86.86
cd08185		380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	86.76
COG1454		377	EutG Alcohol dehydrogenase, class IV [Energy produ	86.69
cd08189		374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	86.36
PF00532		279	Peripla_BP_1: Periplasmic binding proteins and sug	85.83
TIGR02638		379	lactal_redase lactaldehyde reductase. This clade o	85.78
cd08181		357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	84.93
cd01545		270	PBP1_SalR Ligand-binding domain of DNA transcripti	84.51
cd06284		267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	83.89
cd06271		268	PBP1_AglR_RafR_like Ligand-binding domain of DNA t	83.8
cd08188		377	Fe-ADH4 Iron-containing alcohol dehydrogenases-lik	83.76
PRK10423		327	transcriptional repressor RbsR; Provisional	83.64
cd08191		386	HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz	83.34
TIGR02122		320	TRAP_TAXI TRAP transporter solute receptor, TAXI f	83.11
PRK10727		343	DNA-binding transcriptional regulator GalR; Provis	82.97
cd08170		351	GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox	82.39
PRK10401		346	DNA-binding transcriptional regulator GalS; Provis	82.35
cd06288		269	PBP1_sucrose_transcription_regulator Ligand-bindin	82.2
cd06325		281	PBP1_ABC_uncharacterized_transporter Type I peripl	81.94
cd06285		265	PBP1_LacI_like_7 Ligand-binding domain of uncharac	81.71
PRK10014		342	DNA-binding transcriptional repressor MalI; Provis	81.5
COG1609		333	PurR Transcriptional regulators [Transcription]	81.39
cd06286		260	PBP1_CcpB_like Ligand-binding domain of a novel tr	81.2
cd08182		367	HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c	81.18
COG3473		238	Maleate cis-trans isomerase [Secondary metabolites	81.04
cd01575		268	PBP1_GntR Ligand-binding domain of DNA transcripti	81.03
cd06297		269	PBP1_LacI_like_12 Ligand-binding domain of unchara	80.98
cd08176		377	LPO Lactadehyde:propanediol oxidoreductase (LPO) c	80.61
cd08187		382	BDH Butanol dehydrogenase catalyzes the conversion	80.4

>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=1.3e-52  Score=392.72  Aligned_cols=420  Identities=17%  Similarity=0.306  Sum_probs=333.6

Q ss_pred             hHhHHHHHHcCCcEEEEEEEeCCcccchHHHHHHHHHhcCCEEEEEEecCCCCChhHHHHHHHHhccCCceEEEEEeCcH
Q 011629            2 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI   81 (481)
Q Consensus         2 ~Ai~~ll~~fgW~~V~ii~~dd~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~s~~~vIvl~~~~~   81 (481)
                      .|+++|+.||+|..+..+| |.+.|...++.+.+.+..+++.|.....- ...+..++..+++.+.....+.|++.|..+
T Consensus       140 ~al~s~i~hy~W~~fv~ly-D~~rg~s~Lqai~~~a~~~nw~VtA~~v~-~~~d~~~yr~~f~~l~~r~e~rv~iDce~~  217 (897)
T KOG1054|consen  140 GALLSLIDHYKWEKFVYLY-DTDRGLSILQAIMEAAAQNNWQVTAINVG-NINDVKEYRMLFEMLDRRQENRVLIDCESE  217 (897)
T ss_pred             HHHHHHHHhcccceEEEEE-cccchHHHHHHHHHHHHhcCceEEEEEcC-CcccHHHHHHHHHHHhccccceEEEEcccH
Confidence            5899999999999999999 77789999999999999999999876433 233444588999999998899999999999


Q ss_pred             HHHHHHHHHHHcCCccCCeEEEEeccccccccCCccccccccccceeeEEEeeecCCchhHHHHHHHHhhhhcc-CCCCC
Q 011629           82 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNG  160 (481)
Q Consensus        82 ~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~  160 (481)
                      ....++.++.+.+....+|++|+.+..-...+.     ..+.....++.+|+......|..++|.++|+..... .++..
T Consensus       218 ~~~~il~q~i~~~k~~~~YHYvlaNl~f~d~dl-----~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~  292 (897)
T KOG1054|consen  218 RRNRILLQVIELGKHVKGYHYVLANLGFTDIDL-----ERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGAS  292 (897)
T ss_pred             HHHHHHHHHHHHhhhccceEEEEeeCCCchhhH-----HHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCC
Confidence            999999999888888899999999743322222     334455667899999999999999999999976542 34444


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHhhhhcCCCccccCCcccccccCCCccc--ccccccCccHHHHHHHHhcccCceeeeE
Q 011629          161 PIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPI  238 (481)
Q Consensus       161 ~~~~~~~~~~~ydAV~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~l~~v~f~g~sG~v  238 (481)
                      ..++...++..||||.++++|++.+.+++.+....         +...+|  .+..+|.+|..+-++|+++.++|++|+|
T Consensus       293 ~~~~k~tsAlthDailV~~eaf~~~~~q~~~~~rR---------G~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGni  363 (897)
T KOG1054|consen  293 NDPIKYTSALTHDAILVMAEAFRSLRRQRIDISRR---------GNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNI  363 (897)
T ss_pred             CCCcchhhhhhhhHHHHHHHHHHHHHHhhhchhcc---------CCCccccCCCCCchhcchhHHHHHHheeecccccce
Confidence            44556678999999999999999988765433221         111123  1355688899999999999999999999


Q ss_pred             EEccCCCCCCCcEEEEEeecCceEEEEEeeCCCCCcccCCccccCCCCCCCCCccccceeecCCCCCCCCCCccc-cCCC
Q 011629          239 KFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVF-PNNG  317 (481)
Q Consensus       239 ~Fd~~Gd~~~~~y~I~~~~~~~~~~VG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~s~~~-~~~~  317 (481)
                      .||+.|.|.|.+.+|+.+..++..++|.|+...++......                           .+.+-.. ..+.
T Consensus       364 qFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e~~~fv~~~t~---------------------------a~~~~d~~~~~n  416 (897)
T KOG1054|consen  364 QFDKYGRRTNYTIDIVELKSNGSRKVGYWNEGEGFVPGSTV---------------------------AQSRNDQASKEN  416 (897)
T ss_pred             eecccCccccceEEEEEeccCCcceeeeecccCceeecccc---------------------------cccccccccccc
Confidence            99999999999999999999999999999987765432211                           0000000 1123


Q ss_pred             ceEEEeecCCCCCcCcEEec------CCCCeEEeeeHHHHHHHHHHCCCcccEEEEeCCCCC-----CCCC-HHHHHHHH
Q 011629          318 RHLRIGVPSQVIYPEFVAQG------KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH-----NSPK-RFDLLRLV  385 (481)
Q Consensus       318 ~~l~v~~~~~~~~~p~~~~~------~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~-----~~~~-~~~~~~~l  385 (481)
                      +++.|.+.-   -.||.+..      +|+++++||||||+.+||++.+.++++  ..++|++     .++. |+||+++|
T Consensus       417 ~tvvvttiL---~spyvm~kkn~~~~egn~ryEGyCvdLa~~iAkhi~~~Y~l--~iv~dgkyGardaD~k~WnGMvGeL  491 (897)
T KOG1054|consen  417 RTVVVTTIL---ESPYVMLKKNHEQLEGNERYEGYCVDLAAEIAKHIGIKYKL--FIVGDGKYGARDADTKIWNGMVGEL  491 (897)
T ss_pred             ceEEEEEec---CCchhHHHhhHHHhcCCcccceeHHHHHHHHHHhcCceEEE--EEecCCcccccCCCcccccchhHHH
Confidence            444444442   24554432      368899999999999999999977444  4444443     4455 99999999


Q ss_pred             HcccccEEEeeeeeccccccceeeccceeecceEEEEecCC-CCcCccccccCcchhHHHHHHHHHHHHHHHHHhhhccc
Q 011629          386 SEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRL  464 (481)
Q Consensus       386 ~~g~~d~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~l~pf~~~~W~~~~~~~~~~~~~~~~~~~~~  464 (481)
                      ..|++|++++++|+|.+|++.+|||+||+++|++||.+||. .+++.|+||+|+..++|+||+.+++.|++++|++.|++
T Consensus       492 v~grAdiavApLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFS  571 (897)
T KOG1054|consen  492 VYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS  571 (897)
T ss_pred             hcCccceEEeeeeeehhhhhhhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccC
Confidence            99999999999999999999999999999999999999988 77899999999999999999999999999999998887


Q ss_pred             CCCCC
Q 011629          465 NDDFR  469 (481)
Q Consensus       465 ~~~~~  469 (481)
                      +-||+
T Consensus       572 PYEwh  576 (897)
T KOG1054|consen  572 PYEWH  576 (897)
T ss_pred             chhee
Confidence            76763

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor	Back alignment and domain information

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor	Back alignment and domain information

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor	Back alignment and domain information

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor	Back alignment and domain information

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor	Back alignment and domain information

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor	Back alignment and domain information

>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family	Back alignment and domain information

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)	Back alignment and domain information

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family	Back alignment and domain information

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors	Back alignment and domain information

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor	Back alignment and domain information

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor	Back alignment and domain information

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor	Back alignment and domain information

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor	Back alignment and domain information

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family	Back alignment and domain information

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor	Back alignment and domain information

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor	Back alignment and domain information

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor	Back alignment and domain information

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []	Back alignment and domain information

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor	Back alignment and domain information

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases	Back alignment and domain information

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G	Back alignment and domain information

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor	Back alignment and domain information

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family	Back alignment and domain information

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues	Back alignment and domain information

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors	Back alignment and domain information

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2	Back alignment and domain information

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor	Back alignment and domain information

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)	Back alignment and domain information

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors	Back alignment and domain information

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors	Back alignment and domain information

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family	Back alignment and domain information

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors	Back alignment and domain information

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)	Back alignment and domain information

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	Back alignment and domain information

>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)	Back alignment and domain information

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C	Back alignment and domain information

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional	Back alignment and domain information

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene	Back alignment and domain information

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed	Back alignment and domain information

>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)	Back alignment and domain information

>PRK10797 glutamate and aspartate transporter subunit; Provisional	Back alignment and domain information

>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional	Back alignment and domain information

>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed	Back alignment and domain information

>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors	Back alignment and domain information

>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)	Back alignment and domain information

>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional	Back alignment and domain information

>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway	Back alignment and domain information

>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems	Back alignment and domain information

>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family	Back alignment and domain information

>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes	Back alignment and domain information

>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A	Back alignment and domain information

>PRK15007 putative ABC transporter arginine-biding protein; Provisional	Back alignment and domain information

>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein	Back alignment and domain information

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins	Back alignment and domain information

>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family	Back alignment and domain information

>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane	Back alignment and domain information

>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins	Back alignment and domain information

>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides	Back alignment and domain information

>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein	Back alignment and domain information

>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type	Back alignment and domain information

>PRK11260 cystine transporter subunit; Provisional	Back alignment and domain information

>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein	Back alignment and domain information

>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ	Back alignment and domain information

>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria	Back alignment and domain information

>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen	Back alignment and domain information

>PRK10859 membrane-bound lytic transglycosylase F; Provisional	Back alignment and domain information

>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)	Back alignment and domain information

>TIGR02285 conserved hypothetical protein	Back alignment and domain information

>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A	Back alignment and domain information

>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein	Back alignment and domain information

>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]	Back alignment and domain information

>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions	Back alignment and domain information

>smart00062 PBPb Bacterial periplasmic substrate-binding proteins	Back alignment and domain information

>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids	Back alignment and domain information

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily	Back alignment and domain information

>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily	Back alignment and domain information

>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein	Back alignment and domain information

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown	Back alignment and domain information

>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed	Back alignment and domain information

>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein	Back alignment and domain information

>TIGR02990 ectoine_eutA ectoine utilization protein EutA	Back alignment and domain information

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems	Back alignment and domain information

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily	Back alignment and domain information

>PRK09860 putative alcohol dehydrogenase; Provisional	Back alignment and domain information

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway	Back alignment and domain information

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism	Back alignment and domain information

>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1	Back alignment and domain information

>PRK15454 ethanol dehydrogenase EutG; Provisional	Back alignment and domain information

>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A	Back alignment and domain information

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional	Back alignment and domain information

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation	Back alignment and domain information

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor	Back alignment and domain information

>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like	Back alignment and domain information

>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C	Back alignment and domain information

>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein	Back alignment and domain information

>TIGR01481 ccpA catabolite control protein A	Back alignment and domain information

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]	Back alignment and domain information

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators	Back alignment and domain information

>TIGR02638 lactal_redase lactaldehyde reductase	Back alignment and domain information

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)	Back alignment and domain information

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria	Back alignment and domain information

>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PRK10423 transcriptional repressor RbsR; Provisional	Back alignment and domain information

>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate	Back alignment and domain information

>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family	Back alignment and domain information

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional	Back alignment and domain information

>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation	Back alignment and domain information

>PRK10401 DNA-binding transcriptional regulator GalS; Provisional	Back alignment and domain information

>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional	Back alignment and domain information

>COG1609 PurR Transcriptional regulators [Transcription]	Back alignment and domain information

>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species	Back alignment and domain information

>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP)	Back alignment and domain information

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs	Back alignment and domain information

>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria	Back alignment and domain information

>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		481
3kg2_A		823	Ampa Subtype Ionotropic Glutamate Receptor In Compl		5e-13
3q41_A		384	Crystal Structure Of The Glun1 N-Terminal Domain (N		1e-06
2zns_A		256	Crystal Structure Of The Ligand-Binding Core Of The		5e-06
2f34_A		258	Crystal Structure Of The Glur5 Ligand Binding Core		5e-06
1ycj_A		257	Crystal Structure Of The Kainate Receptor Glur5 Lig		5e-06
2wky_A		258	Crystal Structure Of The Ligand-Binding Core Of Glu		6e-06
1txf_A		258	Crystal Structure Of The Glur5 Ligand Binding Core		6e-06
1yae_A		312	Structure Of The Kainate Receptor Subunit Glur6 Ago		2e-05
3qxm_A		258	Crystal Structure Of Human Gluk2 Ligand-Binding Cor		2e-05
2i0c_A		259	Crystal Structure Of The Glur6 Ligand Binding Core		2e-05
3u92_A		257	Crystal Structure Of The Gluk3 Ligand Binding Domai		3e-05
3s9e_A		258	Crystal Structure Of The Kainate Receptor Gluk3 Lig		3e-05
1s50_A		259	X-Ray Structure Of The Glur6 Ligand Binding Core (S		3e-05
2xxw_A		261	Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Di		3e-05
3g3g_A		259	Crystal Structure Of The Glur6 Ligand Binding Domai		3e-05
3g3h_A		259	Crystal Structure Of The Glur6 Ligand Binding Domai		4e-05
2xxr_A		261	Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lb		4e-05
2xxu_A		261	Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Di		4e-05
3rnn_A		292	Crystal Structure Of Iglur2 Ligand Binding Domain W		5e-05
3dp4_A		278	Crystal Structure Of The Binding Domain Of The Ampa		5e-05
3m3f_A		258	Pepa Bound To The Ligand Binding Domain Of Glua3 (F		5e-05
2xx7_A		291	Crystal Structure Of 1-(4-(1-Pyrrolidinylcarbonyl)p		5e-05
4f2o_A		258	Quisqualate Bound To The D655a Mutant Of The Ligand		6e-05
3rn8_A		280	Crystal Structure Of Iglur2 Ligand Binding Domain A		6e-05
3dp6_A		279	Crystal Structure Of The Binding Domain Of The Ampa		6e-05
1gr2_A		279	Structure Of A Glutamate Receptor Ligand Binding Co		6e-05
3b6w_C		263	Crystal Structure Of The Glur2 Ligand Binding Core		6e-05
3b6t_A		263	Crystal Structure Of The Glur2 Ligand Binding Core		6e-05
1m5d_A		263	X-ray Structure Of The Glur2 Ligand Binding Core (s		6e-05
1fw0_A		263	Crystal Structure Of The Glur2 Ligand Binding Core		6e-05
3lsw_A		258	Aniracetam Bound To The Ligand Binding Domain Of Gl		6e-05
4f22_A		258	Kainate Bound To The K660a Mutant Of The Ligand Bin		7e-05
2e4z_A		501	Crystal Structure Of The Ligand-Binding Region Of T		7e-05
1mqh_A		263	Crystal Structure Of The Glur2 Ligand Binding Core		7e-05
1lbc_A		263	Crystal Structure Of Glur2 Ligand Binding Core (S1s		7e-05
1mqd_A		261	X-Ray Structure Of The Glur2 Ligand-Binding Core (S		7e-05
3pd8_A		261	X-Ray Structure Of The Ligand-Binding Core Of Glua2		7e-05
1p1n_A		263	Glur2 Ligand Binding Core (S1s2j) Mutant L650t In C		7e-05
1lbb_A		263	Crystal Structure Of The Glur2 Ligand Binding Domai		7e-05
3t9x_B		258	Glutamate Bound To A Double Cysteine Mutant (V484cE		7e-05
3r7x_A		263	Crystal Structure Analysis Of A Quinazolinedione Su		7e-05
3pd9_A		260	X-Ray Structure Of The Ligand-Binding Core Of Glua2		7e-05
1lb8_A		263	Crystal Structure Of The Non-Desensitizing Glur2 Li		8e-05
2i3v_A		259	Measurement Of Conformational Changes Accompanying		8e-05
3tdj_A		263	Crystal Structure Of The Glua2 Ligand-Binding Domai		8e-05
3o29_A		263	Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Gl		8e-05
3o28_A		263	Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Gl		8e-05
1p1w_A		263	Crystal Structure Of The Glur2 Ligand-Binding Core		8e-05
3ijo_B		258	Crystal Structure Of The Ampa Subunit Glur2 Bound T		8e-05
2xhd_A		263	Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridiny		8e-05
2i3w_A		259	Measurement Of Conformational Changes Accompanying		8e-05
3h03_A		258	Crystal Structure Of The Binding Domain Of The Ampa		8e-05
2uxa_A		261	Crystal Structure Of The Glur2-Flip Ligand Binding		9e-05
2gfe_A		262	Crystal Structure Of The Glur2 A476e S673d Ligand B		9e-05
2i0b_A		259	Crystal Structure Of The Glur6 Ligand Binding Core		1e-04
3t93_B		258	Glutamate Bound To A Double Cysteine Mutant (A452cS		1e-04
2anj_A		263	Crystal Structure Of The Glur2 Ligand Binding Core		1e-04
3fat_A		260	X-Ray Structure Of Iglur4 Flip Ligand-Binding Core		2e-04
3en3_A		257	Crystal Structure Of The Glur4 Ligand-Binding Domai		2e-04
3kei_A		257	Crystal Structure Of The Glua4 Ligand-Binding Domai		2e-04
3mq4_A		481	Metabotropic Glutamate Receptor Mglur7 Complexed Wi		3e-04
3g3j_A		259	Crystal Structure Of The Glur6 Ligand Binding Domai		3e-04
3g3k_A		259	Crystal Structure Of The Glur6 Ligand Binding Domai		3e-04
3g3i_A		259	Crystal Structure Of The Glur6 Ligand Binding Domai		3e-04

>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823