Citrus Sinensis ID: 011657
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | 2.2.26 [Sep-21-2011] | |||||||
| Q6AWX0 | 503 | D-xylose-proton symporter | yes | no | 0.937 | 0.894 | 0.694 | 0.0 | |
| Q8L6Z8 | 503 | D-xylose-proton symporter | no | no | 0.935 | 0.892 | 0.659 | 1e-175 | |
| Q0WWW9 | 558 | D-xylose-proton symporter | no | no | 0.931 | 0.801 | 0.548 | 1e-140 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.785 | 0.824 | 0.293 | 1e-45 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.777 | 0.816 | 0.297 | 2e-44 | |
| Q8VZ80 | 539 | Polyol transporter 5 OS=A | no | no | 0.835 | 0.743 | 0.280 | 8e-43 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.787 | 0.799 | 0.285 | 3e-42 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.841 | 0.845 | 0.296 | 7e-42 | |
| P54723 | 482 | Putative metabolite trans | no | no | 0.785 | 0.782 | 0.281 | 1e-38 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.783 | 0.815 | 0.295 | 5e-38 |
| >sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/487 (69%), Positives = 392/487 (80%), Gaps = 37/487 (7%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DPEQ + S + GKSSGEI S + EPLI PENYSV AAILPFLFPALG
Sbjct: 1 MALDPEQQQPISSVSREFGKSSGEI-SPEREPLIKE--NHVPENYSVVAAILPFLFPALG 57
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLLYGY+IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD+
Sbjct: 58 GLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADV 117
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------- 163
+GRR+ELILAALLYLVGALVTALAP + ++++GR ++G+ +GL
Sbjct: 118 IGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPI 177
Query: 164 -----------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
GGYGIGSL V++ +GWRYMY S PLAVIMG+GMWWLPASPRW
Sbjct: 178 RGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRW 237
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266
LLL ++ KG++++ RE+AI LC LRG + DSA +V+EIL EL++VGEDKEV+ E+
Sbjct: 238 LLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGEL 297
Query: 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326
F GKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL KLIM
Sbjct: 298 FQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIM 357
Query: 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386
TG+AV+V++RLGRRPLLLGGV G+V+SLFLLGSYYLF P VAVVALLLYVGCYQLSF
Sbjct: 358 TGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSF 417
Query: 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
GPIGWLMISE+FPL+LRGRGLS+AVLVNFGANALVTFAFSPLK+LLGAGILF FGVI V
Sbjct: 418 GPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICV 477
Query: 447 LSLAFIF 453
LSL FIF
Sbjct: 478 LSLVFIF 484
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 614 bits (1584), Expect = e-175, Method: Compositional matrix adjust.
Identities = 322/488 (65%), Positives = 386/488 (79%), Gaps = 39/488 (7%)
Query: 1 MATDPEQARARLSSFGKV-GKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
M DPE +SS G+V G SS +A++EPL+ SPENYSV AAI PFLFPAL
Sbjct: 1 MGFDPENQS--ISSVGQVVGDSSSGGITAEKEPLLKE--NHSPENYSVLAAIPPFLFPAL 56
Query: 60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
G LL+GY+IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++AD
Sbjct: 57 GALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVAD 116
Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL---------------- 163
I+GRR+ELILAA LYLVGA+VT +AP F I+++GR +G+GIGL
Sbjct: 117 IIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQ 176
Query: 164 ------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 205
GGYGIGSL + +++GWRYMY P VIMG GM WLPASPR
Sbjct: 177 IRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPR 236
Query: 206 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 265
WLLL A++ +G+ ++L+++AI LCRLRG I DSA +V+EIL ELS VGEDKE + E
Sbjct: 237 WLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEATFGE 296
Query: 266 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLI 325
+F GKCLKAL I GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATR+SILLGL KL+
Sbjct: 297 LFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLV 356
Query: 326 MTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLS 385
MTG++V+V++R+GRRPLLL GVSG+VISLFLLGSYY+F +VPAVAV ALLLYVGCYQLS
Sbjct: 357 MTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLS 416
Query: 386 FGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 445
FGPIGWLMISE+FPL+LRGRG+S+AVLVNFGANALVTFAFSPLK+LLGAGILF AFGVI
Sbjct: 417 FGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVIC 476
Query: 446 VLSLAFIF 453
V+SL FI+
Sbjct: 477 VVSLFFIY 484
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 268/489 (54%), Positives = 349/489 (71%), Gaps = 42/489 (8%)
Query: 3 TDPEQARARLSSFGKVG-KSSGEIGSADEEPLIANGI-RPSPENYSVSAAILPFLFPALG 60
+ P R +VG ++ GE + E +A+ + +PE++S S+ ILPF+FPALG
Sbjct: 52 SKPGLVTTRYRHIFQVGAETGGEFADSGE---VADSLASDAPESFSWSSVILPFIFPALG 108
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI + +AD
Sbjct: 109 GLLFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADF 168
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG---------------- 164
LGRRRELI+AA+LYL+G+L+T APD I++VGR ++G GIGL
Sbjct: 169 LGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQI 228
Query: 165 ------------------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
G+ +GS +D+V GWRYMYG TP+A++MG+GMW LPASPRW
Sbjct: 229 RGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRW 288
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV--SL 263
LLL A++ KG +Q+ +E A+ L +LRG+ GD + VD+ + ED++ +
Sbjct: 289 LLLRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNF 348
Query: 264 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFK 323
EVF G LKAL IG GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATRVS+++G+FK
Sbjct: 349 LEVFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFK 408
Query: 324 LIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQ 383
L+MT +AV V+ LGRRPLL+GGVSGI +SLFLL +YY FL P VAV ALLLYVGCYQ
Sbjct: 409 LLMTWVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQ 468
Query: 384 LSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGV 443
+SFGPI WLM+SE+FPLR RGRG+S+AVL NFG+NA+VTFAFSPLK+ LGA LF FG
Sbjct: 469 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGG 528
Query: 444 IAVLSLAFI 452
IA++SL F+
Sbjct: 529 IALVSLLFV 537
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 218/436 (50%), Gaps = 59/436 (13%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
+ F ALGGLL+GYD G S A + I+ +L S + G + S L GA++G+ +
Sbjct: 10 YFFGALGGLLFGYDTGVISGAILFIQKQM-------NLGSWQQGWVVSAVLLGAILGAAI 62
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSLLV 173
+D GRR+ L+L+A+++ VGAL +A +P+F +++ R + G+ +G I + L
Sbjct: 63 IGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLA 122
Query: 174 DLV----------------------------------AGWRYMYGASTPLAVIMGMGMWW 199
+L GWR+M G + A ++ +G
Sbjct: 123 ELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLFLGGLI 182
Query: 200 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 259
LP SPR+L+ + G + + R ++ V++ + ++ +
Sbjct: 183 LPESPRFLV-----KSGHLDEARHVL---------DTMNKHDQVAVNKEINDIQESAKIV 228
Query: 260 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILL 319
E+F +LIIG GL +FQQ+ G +VLYYA +I GF S A I +
Sbjct: 229 SGGWSELFGKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGF-GVSAALLAHIGI 287
Query: 320 GLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFL---DDVPAVAVVALL 376
G+F +I+T +AV +++++ R+ ++ G G+ ISLF++ F ++V+AL
Sbjct: 288 GIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVIALT 347
Query: 377 LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGI 436
+Y+ + ++GP+ W+MI EVFPL +RG G S A ++N+ AN +V+ F L D G G
Sbjct: 348 VYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFGTGS 407
Query: 437 LFYAFGVIAVLSLAFI 452
LF +G++ S+ F+
Sbjct: 408 LFIGYGILCFASIWFV 423
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Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 220/437 (50%), Gaps = 64/437 (14%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
+ F ALGG LYGYD G S A + ++ L++ GL+ S L GA++GS
Sbjct: 10 YFFGALGGALYGYDTGVISGAILFMKKE-------LGLNAFTEGLVVSSLLVGAILGSGA 62
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIG----------- 162
A + D GR++ ++ AALL+ +G L ALAP+ +MV+ R + G+ +G
Sbjct: 63 AGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLS 122
Query: 163 -----------------------LGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 199
L Y + + D A WR+M G + ++++ +G+ +
Sbjct: 123 ELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEA-WRWMLGLAAVPSLLLLIGILF 181
Query: 200 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 259
+P SPRWL + K A L +LRG ++D+ + ++ +
Sbjct: 182 MPESPRWLFTNGEESK---------AKKILEKLRGTK-------DIDQEIHDIKEAEKQD 225
Query: 260 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGF-SAASDATRVSIL 318
E L+E+F ALI G GL QQ G +++YYA + GF ++AS V I
Sbjct: 226 EGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGI- 284
Query: 319 LGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA---VVAL 375
G ++MT +A+ +++++GR+PLLL G +G+VISL +L LF D+ PA + V+ L
Sbjct: 285 -GTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICL 343
Query: 376 LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAG 435
+++ + +S+GP+ W+M+ E+FPL +RG G V+ L+ +V+ + L + +G
Sbjct: 344 GVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGIS 403
Query: 436 ILFYAFGVIAVLSLAFI 452
LF + I +++ F+
Sbjct: 404 YLFLIYAAIGIMAFLFV 420
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 130/464 (28%), Positives = 221/464 (47%), Gaps = 63/464 (13%)
Query: 40 PSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI 99
P NY+ + AIL ++ +L GYDIG S A I I+ ++ ++IG++
Sbjct: 30 PKRNNYAFACAILA----SMTSILLGYDIGVMSGAMIYIKRD-------LKINDLQIGIL 78
Query: 100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGI 159
+LIGS A +D +GRR ++LA ++ GA++ L+P++ ++ GRF+ GI
Sbjct: 79 AGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGI 138
Query: 160 GIGLG----------------------------------GY--GIGSLLVDLVAGWRYMY 183
G+G GY + + L GWR M
Sbjct: 139 GVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLML 198
Query: 184 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDL--RESAISCLCRLRGQSIGDSA 241
G +VI+ +G+ +P SPRWL++ R GD + + + S LR + I +A
Sbjct: 199 GIGAVPSVILAIGVLAMPESPRWLVMQG--RLGDAKRVLDKTSDSPTEATLRLEDIKHAA 256
Query: 242 --PTEVDEILTELSYVGEDKEVSLREVF---HGKCLKALIIGAGLVLFQQITGQPSVLYY 296
P + + + ++S E RE+ + +I G+ FQQ +G +V+ +
Sbjct: 257 GIPADCHDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLF 316
Query: 297 AASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFL 356
+ I ++AG ++ +G+ K +A +++R+GRRPLLL V G+V+SL
Sbjct: 317 SPRIFKTAGLKTDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAA 376
Query: 357 LGSYYLFLDDVPA-------VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 409
LG+ +D VA+ ++ YV + + GPI W+ SE+FPLRLR +G S+
Sbjct: 377 LGTSLTIIDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSM 436
Query: 410 AVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453
V+VN + +++ +F P+ + G FY FG IA ++ F +
Sbjct: 437 GVVVNRVTSGVISISFLPMSKAMTTGGAFYLFGGIATVAWVFFY 480
|
Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. Arabidopsis thaliana (taxid: 3702) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 220/441 (49%), Gaps = 63/441 (14%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILA 114
L GGLL+GYD G + A P + +L++ GL+TS L+GA +G++
Sbjct: 16 LVSTFGGLLFGYDTGVLNGAL-----PYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFG 70
Query: 115 FNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSLLVD 174
++D GRR+ ++ A+++ + + AP+ +M++ RFV GI +G + + L +
Sbjct: 71 GRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAE 130
Query: 175 L-----------------VAG---------------------WRYMYGASTPLAVIMGMG 196
+ V+G WR+M ++ A+ + G
Sbjct: 131 MSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFG 190
Query: 197 MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 256
M +P SPRWL+ KG +E A+ L ++R + A E+ EI E ++
Sbjct: 191 MIRMPESPRWLV-----SKGR----KEDALRVLKKIRDE---KRAAAELQEI--EFAFKK 236
Query: 257 EDK--EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATR 314
ED+ + + +++ + + IG G+ + QQITG S++YY IL+++GF + A
Sbjct: 237 EDQLEKATFKDLSVPWVRRIVFIGLGIAIVQQITGVNSIMYYGTEILRNSGFQTEA-ALI 295
Query: 315 VSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA 374
+I G+ ++ T + + ++ R+GRRP+L+ G+ G +L L+G + L L+ PA+ V
Sbjct: 296 GNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIFSLVLEGSPALPYVV 355
Query: 375 LLL---YVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431
L L ++ Q + P+ WLM+SE+FPLRLRG G+ V V + N V+F F L
Sbjct: 356 LSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAA 415
Query: 432 LGAGILFYAFGVIAVLSLAFI 452
+G F+ F + + S+ F+
Sbjct: 416 IGLSTTFFIFVGLGICSVLFV 436
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 58/462 (12%)
Query: 27 SADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGI 86
S +E L E + IL G +G +G TS A I I
Sbjct: 12 SIEERLLQLKNQNDDSECRITACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKD----- 66
Query: 87 SWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD 146
DLS + S S GA IG++ + +A ILGRR+ + ++ LL ++G A A D
Sbjct: 67 --LDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKD 124
Query: 147 FIIMVVGRFVFGIGIGLGGYGIGSLLVDL-----------------------------VA 177
+ + GR GIG+GL Y + + ++
Sbjct: 125 VMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFL 184
Query: 178 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237
WR + I +G++++P SPRWL + G ++L S L RLRG +
Sbjct: 185 NWRILALLGALPCFIQVIGLFFVPESPRWL-----AKVGSDKELENS----LLRLRGGNA 235
Query: 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYA 297
S E++T++ V D + S ++F K L++G GL+L QQ +G +VL YA
Sbjct: 236 DISREASDIEVMTKM--VENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSAVLSYA 293
Query: 298 ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLL 357
++IL+ AGFS +T LLGLF + + V++V++ GRRPLLL VSG+ I+ L+
Sbjct: 294 STILRKAGFSVTIGST----LLGLFMIPKAMIGVILVDKWGRRPLLLTSVSGMCITSMLI 349
Query: 358 GSYY------LFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV 411
G + L + P + + LY+G Y + G + W+++SE+FP+ ++ S+
Sbjct: 350 GVAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVT 409
Query: 412 LVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453
LV++ ++++VT+AF+ L + G FY FG + L+L FI+
Sbjct: 410 LVSWSSSSIVTYAFNFLLEWSTQGT-FYVFGAVGGLALLFIW 450
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P54723|YFIG_BACSU Putative metabolite transport protein YfiG OS=Bacillus subtilis (strain 168) GN=yfiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/440 (28%), Positives = 209/440 (47%), Gaps = 63/440 (14%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILA 114
L GGLL+GYD G + A P ++ +L+ V GL+ S L GA G++
Sbjct: 26 LVSTFGGLLFGYDTGVINGAL-----PFMATAGQLNLTPVTEGLVASSLLLGAAFGAMFG 80
Query: 115 FNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSLLVD 174
++D GRR+ ++ ALL++ L +P+ +M+ RF+ G+ +G + + L +
Sbjct: 81 GRLSDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAE 140
Query: 175 -----------------LVAG---------------------WRYMYGASTPLAVIMGMG 196
+V G WRYM +T AV++ G
Sbjct: 141 ISPAERRGRIVTQNELMIVIGQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFG 200
Query: 197 MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 256
M +P SPRW L A R GD A+ L ++R S A E+ EI + G
Sbjct: 201 MLIVPESPRW--LAAKGRMGD-------ALRVLRQIREDS---QAQQEIKEIKHAIE--G 246
Query: 257 EDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRV- 315
K+ + + L IG G+ + QQITG S++YY IL+ AGF ++A +
Sbjct: 247 TAKKAGFHDFQEPWIRRILFIGIGIAIVQQITGVNSIMYYGTEILREAGFQ--TEAALIG 304
Query: 316 SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVAL 375
+I G+ +I + ++ ++ RRP+L+ G G + +L L+G + L+ PA+ V L
Sbjct: 305 NIANGVISVIAVIFGIWLLGKVRRRPMLIIGQIGTMTALLLIGILSIVLEGTPALPYVVL 364
Query: 376 ---LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432
+L++ Q + + WLM+SE+FP+ +RG G+ ++ + AN L+ F F L + +
Sbjct: 365 SLTILFLAFQQTAISTVTWLMLSEIFPMHVRGLGMGISTFCLWTANFLIGFTFPILLNHI 424
Query: 433 GAGILFYAFGVIAVLSLAFI 452
G F+ F + +L++ F+
Sbjct: 425 GMSATFFIFVAMNILAILFV 444
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/437 (29%), Positives = 217/437 (49%), Gaps = 61/437 (13%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
+ F ALGGLLYGYD G S A + I + L+++ GL+ S L GA+ GS L
Sbjct: 11 YFFGALGGLLYGYDTGVISGALLFINNDI-------PLTTLTEGLVVSMLLLGAIFGSAL 63
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIG----------- 162
+ +D GRR+ + + ++++++GAL A + +++ R + G+ +G
Sbjct: 64 SGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLS 123
Query: 163 ----------LGGYG-----IGSLLVDLV-------AGWRYMYGASTPLAVIMGMGMWWL 200
LG G LL +V WR+M G + AV++ +G+ ++
Sbjct: 124 EMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEAWRWMVGLAAVPAVLLLIGIAFM 183
Query: 201 PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 260
P SPRWL+ ++G ++ R R +I P +++ L E+ +K+
Sbjct: 184 PESPRWLV-----KRGSEEEAR----------RIMNITHD-PKDIEMELAEMKQGEAEKK 227
Query: 261 VSLREVFHGKCLK-ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILL 319
+ V K ++ L+IG GL +FQQ G +V+YYA +I AG ++ A ++ +
Sbjct: 228 ETTLGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALG-TMGI 286
Query: 320 GLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA---VVALL 376
G+ +IM A+++++R+GR+ LL+ G GI +SL L L L + A VV L
Sbjct: 287 GILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTVVFLG 346
Query: 377 LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGI 436
+Y+ YQ ++GP+ W+++ E+FP + RG LV AN +V+ F + +G
Sbjct: 347 VYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAW 406
Query: 437 LFYAFGVIAVLSLAFIF 453
+F F VI +LS F F
Sbjct: 407 VFMVFSVICLLSFFFAF 423
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | ||||||
| 224144970 | 502 | predicted protein [Populus trichocarpa] | 0.935 | 0.894 | 0.786 | 0.0 | |
| 118486465 | 502 | unknown [Populus trichocarpa] | 0.935 | 0.894 | 0.786 | 0.0 | |
| 255557987 | 502 | sugar transporter, putative [Ricinus com | 0.931 | 0.890 | 0.730 | 0.0 | |
| 449438795 | 502 | PREDICTED: D-xylose-proton symporter-lik | 0.916 | 0.876 | 0.728 | 0.0 | |
| 225454803 | 500 | PREDICTED: D-xylose-proton symporter-lik | 0.927 | 0.89 | 0.75 | 0.0 | |
| 357474255 | 501 | D-xylose-proton symporter-like protein [ | 0.933 | 0.894 | 0.696 | 0.0 | |
| 297811841 | 502 | sugar transporter family protein [Arabid | 0.933 | 0.892 | 0.700 | 0.0 | |
| 356538461 | 501 | PREDICTED: D-xylose-proton symporter-lik | 0.933 | 0.894 | 0.712 | 0.0 | |
| 388501928 | 501 | unknown [Medicago truncatula] | 0.933 | 0.894 | 0.691 | 0.0 | |
| 356544341 | 497 | PREDICTED: D-xylose-proton symporter-lik | 0.925 | 0.893 | 0.706 | 0.0 |
| >gi|224144970|ref|XP_002325479.1| predicted protein [Populus trichocarpa] gi|222862354|gb|EEE99860.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/487 (78%), Positives = 413/487 (84%), Gaps = 38/487 (7%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DPEQ LSS GKVGKSSGEIG EEPL+ GI S ENYS+++AI PFLFPALG
Sbjct: 1 MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLASAIFPFLFPALG 56
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD
Sbjct: 57 GLLYGYDIGSTSCATISIQSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------- 163
LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGL
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176
Query: 164 -----------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
GGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266
LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296
Query: 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326
F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 356
Query: 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386
TG AVLVV+RLGRRPLLLGGVSG+VISLFLLGSYY+FLD+ P VAV ALLLYVGCYQLSF
Sbjct: 357 TGTAVLVVDRLGRRPLLLGGVSGMVISLFLLGSYYIFLDNAPVVAVAALLLYVGCYQLSF 416
Query: 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
GPIGWLMISE+FPLRLRGRGL +AVLVNFGANALVTF FSPLK LLGAGILFYAFGVIAV
Sbjct: 417 GPIGWLMISEIFPLRLRGRGLGIAVLVNFGANALVTFTFSPLKALLGAGILFYAFGVIAV 476
Query: 447 LSLAFIF 453
+SL FIF
Sbjct: 477 VSLLFIF 483
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486465|gb|ABK95072.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/487 (78%), Positives = 412/487 (84%), Gaps = 38/487 (7%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DPEQ LSS GKVGKSSGEIG EEPL+ GI S ENYS+ +AI PFLFPALG
Sbjct: 1 MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLVSAIFPFLFPALG 56
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD
Sbjct: 57 GLLYGYDIGSTSCATISIKSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------- 163
LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGL
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176
Query: 164 -----------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
GGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266
LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296
Query: 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326
F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 356
Query: 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386
TG AVLVV+RLGRRPLLLGGVSG+VISLFLLGSYY+FLD+ P VAV ALLLYVGCYQLSF
Sbjct: 357 TGTAVLVVDRLGRRPLLLGGVSGMVISLFLLGSYYIFLDNAPVVAVAALLLYVGCYQLSF 416
Query: 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
GPIGWLMISE+FPLRLRGRGL +AVLVNFGANALVTF FSPLK LLGAGILFYAFGVIAV
Sbjct: 417 GPIGWLMISEIFPLRLRGRGLGIAVLVNFGANALVTFTFSPLKALLGAGILFYAFGVIAV 476
Query: 447 LSLAFIF 453
+SL FIF
Sbjct: 477 VSLLFIF 483
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557987|ref|XP_002520022.1| sugar transporter, putative [Ricinus communis] gi|223540786|gb|EEF42346.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/486 (73%), Positives = 402/486 (82%), Gaps = 39/486 (8%)
Query: 2 ATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGG 61
ATD EQ SS GKVGKSSGEI A EEPL+ G S E YS+ AA+LPFLFPALGG
Sbjct: 3 ATDLEQPS--FSSLGKVGKSSGEIDGA-EEPLLNGG--SSSEYYSILAAVLPFLFPALGG 57
Query: 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL 121
LLYGYDIG+TSCATI+IES T SGISWY+L++V++GLITSGSLYGALIGS++AFNIAD L
Sbjct: 58 LLYGYDIGATSCATITIESATSSGISWYNLNAVQLGLITSGSLYGALIGSVVAFNIADFL 117
Query: 122 GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG----------------- 164
GRRRELI+AALLYLVGALVT LAPDF++MV+GRFV+GIGIGL
Sbjct: 118 GRRRELIVAALLYLVGALVTGLAPDFVVMVIGRFVYGIGIGLAMHAAPMYIAETAPSQIR 177
Query: 165 -----------------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWL 207
GYG+GSLLVD+V GWRYMY AS PLAVIMG+GMW LP SPRW+
Sbjct: 178 GRLISLKEFFIVLGMVAGYGVGSLLVDIVRGWRYMYVASAPLAVIMGVGMWCLPQSPRWI 237
Query: 208 LLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF 267
LLCAM+ KG+MQDL+E+AI CLC+LRG +IGD+AP V+E+L+EL++VGE+KE SLR++F
Sbjct: 238 LLCAMQGKGNMQDLKETAICCLCKLRGGAIGDAAPALVEEMLSELAFVGEEKETSLRDLF 297
Query: 268 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMT 327
GKCLKAL IGAGLV+FQQITGQPSVLYYA SI QSAGFSAASDATRVSILLGL KLIMT
Sbjct: 298 KGKCLKALTIGAGLVIFQQITGQPSVLYYAGSIFQSAGFSAASDATRVSILLGLLKLIMT 357
Query: 328 GLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 387
G AV+ V+RLGRRPLLL GVSG+ ISLFLLGSYY FL+DVPAVAVVALLLYVGCYQ SFG
Sbjct: 358 GGAVVAVDRLGRRPLLLTGVSGMAISLFLLGSYYRFLNDVPAVAVVALLLYVGCYQFSFG 417
Query: 388 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 447
PIGWLMISE+FPLRLRGR L +AVLVNFGANA+VTFAFSPLK L+GAGILFY FGVI+V+
Sbjct: 418 PIGWLMISEIFPLRLRGRALGIAVLVNFGANAIVTFAFSPLKALIGAGILFYGFGVISVV 477
Query: 448 SLAFIF 453
SL FIF
Sbjct: 478 SLLFIF 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438795|ref|XP_004137173.1| PREDICTED: D-xylose-proton symporter-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/476 (72%), Positives = 400/476 (84%), Gaps = 36/476 (7%)
Query: 12 LSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGST 71
LSS GKVG+SSGEI + EEPLI+ + S EN+S AAILPFLFPALGGLLYGYDIG+T
Sbjct: 10 LSSLGKVGQSSGEIDNV-EEPLISVEFKHS-ENFSARAAILPFLFPALGGLLYGYDIGAT 67
Query: 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131
SCATIS++S + SGISWY+LSSVE+GL+TSGSLYGALIGS+LAFN+AD LGRRRELIL+A
Sbjct: 68 SCATISLQSASSSGISWYNLSSVEVGLVTSGSLYGALIGSVLAFNVADFLGRRRELILSA 127
Query: 132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG--------------------------- 164
L+YLVGA++T LAP+F+I+++GR + G GIGL
Sbjct: 128 LMYLVGAIITGLAPNFVILIIGRIISGTGIGLAMHAAPMYIAETSPSKIRGQMISLKEFF 187
Query: 165 -------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGD 217
GY IGSLLV++VAGWRY+Y A+TP+A++MG+GMWWLP+SPRWLLLCA++RKG+
Sbjct: 188 IVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQRKGN 247
Query: 218 MQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALII 277
M DL+E AISCL RLRG IG++A EV+EIL ELS++GE +E S+ E+F GKCLKALII
Sbjct: 248 MADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALII 307
Query: 278 GAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL 337
GAGLVLFQQITGQPSVLYYA SI QSAGFSAA+DATRVSILLGL KLIMTG AVLVV+RL
Sbjct: 308 GAGLVLFQQITGQPSVLYYAPSIFQSAGFSAAADATRVSILLGLLKLIMTGAAVLVVDRL 367
Query: 338 GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV 397
GRRPLLLGGVSGI ISLFLLGSYYLFL +VPAVAVVALLLYVG YQLSFGPIGWLMISEV
Sbjct: 368 GRRPLLLGGVSGITISLFLLGSYYLFLGNVPAVAVVALLLYVGSYQLSFGPIGWLMISEV 427
Query: 398 FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453
FPLRLRGRGLS+AVLVNFGANALVTFAFSPLK+LLGAGILF+ FGV+A+LSL FIF
Sbjct: 428 FPLRLRGRGLSIAVLVNFGANALVTFAFSPLKELLGAGILFFIFGVVAILSLVFIF 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454803|ref|XP_002277076.1| PREDICTED: D-xylose-proton symporter-like 2 [Vitis vinifera] gi|297737329|emb|CBI26530.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/484 (75%), Positives = 404/484 (83%), Gaps = 39/484 (8%)
Query: 4 DPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLL 63
D EQ L+S GKVGKSSGEI +EPLI +G+ S ENYSV+AAILPFLFPALGGLL
Sbjct: 3 DLEQPS--LTSLGKVGKSSGEI-DGMQEPLI-DGVGSS-ENYSVAAAILPFLFPALGGLL 57
Query: 64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123
YGYDIG+TSCA ISIES +LSGISWYDLSSV+IGL TSGSLYGALIGS+LAFNIAD GR
Sbjct: 58 YGYDIGATSCALISIESSSLSGISWYDLSSVQIGLTTSGSLYGALIGSVLAFNIADFFGR 117
Query: 124 RRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG------------------- 164
RRELILAALLYLVGALVTA+AP FI+MV+GRFVFGIGIGL
Sbjct: 118 RRELILAALLYLVGALVTAVAPSFIVMVIGRFVFGIGIGLSMHAAPMYIAETAPTQIRGR 177
Query: 165 ---------------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 209
GY +GSLLVD+V+GWRYMYG S+PL+VIMG+GMWWLPASPRWLLL
Sbjct: 178 LISLKEFFIVLGMVVGYTVGSLLVDMVSGWRYMYGVSSPLSVIMGIGMWWLPASPRWLLL 237
Query: 210 CAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 269
A++ KG+MQDL+E+AI CLCRLRG +IGDSAP +VD IL ELS E KE SL E+FHG
Sbjct: 238 RAIQGKGNMQDLKENAIFCLCRLRGPAIGDSAPAQVDGILDELSSSEETKEASLGEMFHG 297
Query: 270 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGL 329
KCLKAL IG GLVLFQQITGQPSVLYYAASIL+SAGFS ASDATRVSIL+GL KLIMT +
Sbjct: 298 KCLKALTIGGGLVLFQQITGQPSVLYYAASILESAGFSGASDATRVSILVGLLKLIMTAV 357
Query: 330 AVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPI 389
AVLVV+++GRRPLLLGGVSGIVISLFLLGSYY++L D PAVAV+ALLLYVGCYQLSFGPI
Sbjct: 358 AVLVVDKVGRRPLLLGGVSGIVISLFLLGSYYIYLGDAPAVAVIALLLYVGCYQLSFGPI 417
Query: 390 GWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 449
GWLMISE+FPLR+RGRGLS+AVLVNFGANA+VTF+FSPLK LLGAG+LFY FGVIAVLSL
Sbjct: 418 GWLMISEIFPLRVRGRGLSIAVLVNFGANAIVTFSFSPLKALLGAGVLFYGFGVIAVLSL 477
Query: 450 AFIF 453
FIF
Sbjct: 478 LFIF 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474255|ref|XP_003607412.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|357474261|ref|XP_003607415.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508467|gb|AES89609.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508470|gb|AES89612.1| D-xylose-proton symporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/487 (69%), Positives = 402/487 (82%), Gaps = 39/487 (8%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA+DPEQ LSSF + GKSS E+ S + EPL+ NGI P++YS+SAAILPFLFPA G
Sbjct: 1 MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD
Sbjct: 56 GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG---------------- 164
LGRRREL++AAL+YLVGAL+TA AP+F ++V+GR VFGIGIGL
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLVIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175
Query: 165 ------------------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266
+LL A+++KGD+Q L+++AI LC+L+G++ DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295
Query: 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326
F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQSAGFS A+DATRVSILLG+FKLIM
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQSAGFSLAADATRVSILLGVFKLIM 355
Query: 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386
TG+AV+VV+RLGRRPLLLGGVSGIVISLFLLGSYY+FLD+ +AVV LLLYVGCYQ+SF
Sbjct: 356 TGVAVVVVDRLGRRPLLLGGVSGIVISLFLLGSYYIFLDNAAVLAVVGLLLYVGCYQISF 415
Query: 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
GP+GWLMI+E+FPLRLRG+GLS+AVLVNF ANALVTFAFSPLKDLLGAGILFY F IAV
Sbjct: 416 GPMGWLMIAEIFPLRLRGKGLSIAVLVNFAANALVTFAFSPLKDLLGAGILFYIFSAIAV 475
Query: 447 LSLAFIF 453
SL FI+
Sbjct: 476 ASLVFIY 482
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811841|ref|XP_002873804.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319641|gb|EFH50063.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/488 (70%), Positives = 396/488 (81%), Gaps = 40/488 (8%)
Query: 1 MATDPEQARARLSSFGK-VGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
MA DPEQ +SS + VGKS GEI SA+ EPLI +PENYSV AAILPF FPAL
Sbjct: 1 MALDPEQQP--ISSVSREVGKSDGEI-SAEREPLIKE--NHTPENYSVVAAILPFFFPAL 55
Query: 60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
GGLLYGY+IG+TSCATIS++SP+LSGISWY+L+SV++GL+TSGSLYGAL GSI+AF IAD
Sbjct: 56 GGLLYGYEIGATSCATISLQSPSLSGISWYNLTSVDVGLVTSGSLYGALFGSIVAFTIAD 115
Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL---------------- 163
++GRR+ELILAALLYLVGALVTALAP + ++++GR +G+ +GL
Sbjct: 116 VIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVTYGVSVGLAMHAAPMYIAETAPSP 175
Query: 164 ------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 205
GGYGIGSL V++ +GWRYMY S PLAVIMG+GMWWLPASPR
Sbjct: 176 IRGQLVSLKEFFIVLGMVGGYGIGSLTVNIHSGWRYMYATSVPLAVIMGIGMWWLPASPR 235
Query: 206 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 265
WLLL ++ KG++++ RESAI LCRLRG + DSA +V+EIL EL++VGEDKEV+ E
Sbjct: 236 WLLLRVIQGKGNVENQRESAIKSLCRLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGE 295
Query: 266 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLI 325
+FHGKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL KLI
Sbjct: 296 LFHGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLI 355
Query: 326 MTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLS 385
MTG+AV+V++RLGRRPLLLGGVSG+V+SLFLLGSYYLF P VAVVALLLYVGCYQLS
Sbjct: 356 MTGVAVVVIDRLGRRPLLLGGVSGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLS 415
Query: 386 FGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 445
FGPIGWLMISE+FPL+LRGRGLS+AVLVNFGANALVTFAFSPLK+LLGAGILF FGVI
Sbjct: 416 FGPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVIC 475
Query: 446 VLSLAFIF 453
VLSL FIF
Sbjct: 476 VLSLVFIF 483
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538461|ref|XP_003537722.1| PREDICTED: D-xylose-proton symporter-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/487 (71%), Positives = 398/487 (81%), Gaps = 39/487 (8%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA+DPEQ SSF K +S GEIGSA E PL+ NG+ S E+YSVSAAILPFLFPALG
Sbjct: 1 MASDPEQPAH--SSFAKEARSGGEIGSAIE-PLL-NGVHDS-ESYSVSAAILPFLFPALG 55
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISI+SPTLSG+SWY LSSVEIGL+TSGSLYGALIGS+LAFN+AD
Sbjct: 56 GLLFGYDIGATSSATISIQSPTLSGVSWYKLSSVEIGLLTSGSLYGALIGSLLAFNVADF 115
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG---------------- 164
LGRR+ELI AA++YLVGALVTALAP+F ++V+GR VFGIGIGL
Sbjct: 116 LGRRKELIGAAVVYLVGALVTALAPNFPVLVLGRLVFGIGIGLAMHAAPMYIAETAPTPI 175
Query: 165 ------------------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
GYGIGSL V+ V+GWRYMYG S+P+A+IMG+GMWWLPASPRW
Sbjct: 176 RGQLISLKEFFIVLGMVAGYGIGSLFVETVSGWRYMYGVSSPVAIIMGVGMWWLPASPRW 235
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266
LLL A++ KGD+Q+ ++ AI LC+LRGQ+ DS P +VDEIL ELSY+GE+KE + E+
Sbjct: 236 LLLRAIQGKGDVQNSKDIAIRSLCQLRGQAFYDSVPWQVDEILAELSYLGEEKEATFGEL 295
Query: 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326
F GKCLKAL IG+GLVLFQQITGQPSVLYYA SI QSAGFS ASDATRVSILLG FKLIM
Sbjct: 296 FQGKCLKALWIGSGLVLFQQITGQPSVLYYAGSIFQSAGFSGASDATRVSILLGFFKLIM 355
Query: 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386
TG+AV+VV++LGRRPLLLGGVSGIVISLF LGSYY+FLD+ P VAV+ LLLYVG YQ+SF
Sbjct: 356 TGVAVVVVDKLGRRPLLLGGVSGIVISLFFLGSYYIFLDNSPVVAVIGLLLYVGSYQISF 415
Query: 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
GPIGWLMI+E+FPLRLRGRGLS+AVLVNFGANALVTFAFSPLK LLGAGILFY F VIAV
Sbjct: 416 GPIGWLMIAEIFPLRLRGRGLSIAVLVNFGANALVTFAFSPLKALLGAGILFYTFCVIAV 475
Query: 447 LSLAFIF 453
SL FI+
Sbjct: 476 ASLVFIY 482
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388501928|gb|AFK39030.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/487 (69%), Positives = 401/487 (82%), Gaps = 39/487 (8%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA+DPEQ LSSF + GKSS E+ S + EPL+ NGI P++YS+SAAILPFLFPA G
Sbjct: 1 MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD
Sbjct: 56 GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG---------------- 164
LGRRREL++AAL+YLVGAL+TA AP+F ++++GR VFGIGIGL
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLLIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175
Query: 165 ------------------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266
+LL A+++KGD+Q L+++AI LC+L+G++ DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295
Query: 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326
F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQSAGFS A+DATRVSILLG+FKLIM
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQSAGFSLAADATRVSILLGVFKLIM 355
Query: 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386
TG+AV+VV+RLGRRPLLLGGVSGIVISLFLLGSYY+FLD+ +AVV LLLYVGCYQ+SF
Sbjct: 356 TGVAVVVVDRLGRRPLLLGGVSGIVISLFLLGSYYIFLDNAAVLAVVGLLLYVGCYQISF 415
Query: 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
GP+GWLMI+E+FPLRLRG+GLS+AV VNF ANALVTFAFSPLKDLLGAGILFY F IAV
Sbjct: 416 GPMGWLMIAEIFPLRLRGKGLSIAVFVNFAANALVTFAFSPLKDLLGAGILFYIFSAIAV 475
Query: 447 LSLAFIF 453
SL FI+
Sbjct: 476 ASLVFIY 482
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544341|ref|XP_003540611.1| PREDICTED: D-xylose-proton symporter-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/487 (70%), Positives = 393/487 (80%), Gaps = 43/487 (8%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DP Q A K +S GEI SA EPL+ NG+ S E+YSVSAAILPFLFPALG
Sbjct: 1 MAFDPVQPVA------KKARSGGEIVSA-REPLL-NGVHDS-ESYSVSAAILPFLFPALG 51
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISIESPTLSG+SWY LSSVEIGL+TSGSLYGALIGS+LAFN+AD
Sbjct: 52 GLLFGYDIGATSSATISIESPTLSGVSWYKLSSVEIGLLTSGSLYGALIGSVLAFNVADF 111
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLG---------------- 164
LGRR+ELI +A++YLVGALVTALAP+F ++V+GR VFG GIGL
Sbjct: 112 LGRRKELIGSAVVYLVGALVTALAPNFPVLVLGRLVFGTGIGLAMHAAPMYIAETAPTPI 171
Query: 165 ------------------GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 206
GYGIGSL V+ VAGWRYMYG S+P+A+IMG+GMWWLPASPRW
Sbjct: 172 RGQLISLKEFFIVLGMVAGYGIGSLFVETVAGWRYMYGVSSPMAIIMGLGMWWLPASPRW 231
Query: 207 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266
LLL A++ KGD+Q+ ++ I LC+L+GQ+ DS P +VDEIL ELSY+GE+KE + E+
Sbjct: 232 LLLRAIQGKGDVQNSKDIVIRSLCQLQGQAFNDSIPWQVDEILAELSYLGEEKEATFGEL 291
Query: 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326
F GKCLKAL IGAGLVLFQQITGQPSVLYYA SI QSAGFS ASDATRVSILLG+FKLIM
Sbjct: 292 FQGKCLKALWIGAGLVLFQQITGQPSVLYYAGSIFQSAGFSGASDATRVSILLGVFKLIM 351
Query: 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386
TG+AV+VV++LGRRPLLLGGVSGIVISLF LGSYY+FLD+ P VAVV LLLYVG YQ+SF
Sbjct: 352 TGVAVVVVDKLGRRPLLLGGVSGIVISLFFLGSYYIFLDNTPVVAVVGLLLYVGSYQISF 411
Query: 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
GPIGWLMI+E+FPLRLRGRGLS+AVLVNFGANALVTFAFSPLK LLGAGILFY FGVIAV
Sbjct: 412 GPIGWLMIAEIFPLRLRGRGLSIAVLVNFGANALVTFAFSPLKALLGAGILFYTFGVIAV 471
Query: 447 LSLAFIF 453
SL FI+
Sbjct: 472 TSLVFIY 478
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | ||||||
| TAIR|locus:2148201 | 503 | AT5G17010 [Arabidopsis thalian | 0.589 | 0.562 | 0.653 | 8.1e-125 | |
| TAIR|locus:2097780 | 503 | VGT1 "vacuolar glucose transpo | 0.589 | 0.562 | 0.625 | 2.5e-119 | |
| TAIR|locus:2168494 | 558 | AT5G59250 [Arabidopsis thalian | 0.589 | 0.507 | 0.527 | 4.8e-95 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.537 | 0.539 | 0.285 | 1e-27 | |
| UNIPROTKB|F1S3R3 | 621 | SLC2A12 "Uncharacterized prote | 0.281 | 0.217 | 0.361 | 9.1e-27 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.156 | 0.161 | 0.426 | 1.4e-26 | |
| UNIPROTKB|F1MIV2 | 621 | SLC2A12 "Solute carrier family | 0.281 | 0.217 | 0.361 | 2.1e-26 | |
| MGI|MGI:3052471 | 622 | Slc2a12 "solute carrier family | 0.281 | 0.217 | 0.355 | 4.8e-26 | |
| UNIPROTKB|Q5J316 | 621 | SLC2A12 "Solute carrier family | 0.281 | 0.217 | 0.355 | 6.7e-26 | |
| RGD|1310175 | 621 | Slc2a12 "solute carrier family | 0.281 | 0.217 | 0.342 | 7.6e-26 |
| TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 185/283 (65%), Positives = 211/283 (74%)
Query: 170 SLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCL 229
SL V++ +GWRYMY S PLAVIMG+GMWWLPASPRWLLL ++ KG++++ RE+AI L
Sbjct: 201 SLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREAAIKSL 260
Query: 230 CRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITG 289
C LRG + DSA +V+EIL EL++VGEDKEV+ E+F GKCLKALIIG GLVLFQQITG
Sbjct: 261 CCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGELFQGKCLKALIIGGGLVLFQQITG 320
Query: 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAXXXXXXXXXXXXXXXXXXX 349
QPSVLYYA SILQ+AGFSAA DATRVSILLGL KLIMTG+A
Sbjct: 321 QPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGG 380
Query: 350 IVIXXXXXXXXXXXXXXVPXXXXXXXXXYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 409
+V+ P YVGCYQLSFGPIGWLMISE+FPL+LRGRGLS+
Sbjct: 381 MVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSL 440
Query: 410 AVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452
AVLVNFGANALVTFAFSPLK+LLGAGILF FGVI VLSL FI
Sbjct: 441 AVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFI 483
|
|
| TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 876 (313.4 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 177/283 (62%), Positives = 207/283 (73%)
Query: 170 SLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCL 229
SL + +++GWRYMY P VIMG GM WLPASPRWLLL A++ +G+ ++L+++AI L
Sbjct: 201 SLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIRSL 260
Query: 230 CRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITG 289
CRLRG I DSA +V+EIL ELS VGEDKE + E+F GKCLKAL I GLVLFQQITG
Sbjct: 261 CRLRGSVIADSAAEQVNEILAELSLVGEDKEATFGELFRGKCLKALTIAGGLVLFQQITG 320
Query: 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAXXXXXXXXXXXXXXXXXXX 349
QPSVLYYA SILQ+AGFSAA+DATR+SILLGL KL+MTG++
Sbjct: 321 QPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLLCGVSG 380
Query: 350 IVIXXXXXXXXXXXXXXVPXXXXXXXXXYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 409
+VI VP YVGCYQLSFGPIGWLMISE+FPL+LRGRG+S+
Sbjct: 381 MVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGISL 440
Query: 410 AVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452
AVLVNFGANALVTFAFSPLK+LLGAGILF AFGVI V+SL FI
Sbjct: 441 AVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFI 483
|
|
| TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
Identities = 151/286 (52%), Positives = 191/286 (66%)
Query: 170 SLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCL 229
S +D+V GWRYMYG TP+A++MG+GMW LPASPRWLLL A++ KG +Q+ +E A+ L
Sbjct: 252 SFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLAL 311
Query: 230 CRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV--SLREVFHGKCLKALIIGAGLVLFQQ 286
+LRG+ GD + VD+ + ED++ + EVF G LKAL IG GLVLFQQ
Sbjct: 312 SKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQ 371
Query: 287 ITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAXXXXXXXXXXXXXXXX 346
ITGQPSVLYYA SILQ+AGFSAA+DATRVS+++G+FKL+MT +A
Sbjct: 372 ITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGG 431
Query: 347 XXXIVIXXXXXXXXXXXXXXVPXXXXXXXXXYVGCYQLSFGPIGWLMISEVFPLRLRGRG 406
I + P YVGCYQ+SFGPI WLM+SE+FPLR RGRG
Sbjct: 432 VSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG 491
Query: 407 LSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452
+S+AVL NFG+NA+VTFAFSPLK+ LGA LF FG IA++SL F+
Sbjct: 492 ISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFV 537
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 80/280 (28%), Positives = 131/280 (46%)
Query: 179 WRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG 238
WR + I +G++++P SPRWL + G ++L S L RLRG +
Sbjct: 186 WRILALLGALPCFIQVIGLFFVPESPRWLA-----KVGSDKELENS----LLRLRGGNAD 236
Query: 239 DSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAA 298
S E++T++ V D + S ++F K L++G GL+L QQ +G +VL YA+
Sbjct: 237 ISREASDIEVMTKM--VENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSAVLSYAS 294
Query: 299 SILQSAGFSAASDATRVSILLGLFKL--IMTGLAXXXXXXXXXXXXXXXXXXXIVIXXXX 356
+IL+ AGFS +T LLGLF + M G+ I
Sbjct: 295 TILRKAGFSVTIGST----LLGLFMIPKAMIGVILVDKWGRRPLLLTSVSGMCITSMLIG 350
Query: 357 XXXXXXXXXXVPXXXXXXX----XXYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVL 412
+P Y+G Y + G + W+++SE+FP+ ++ S+ L
Sbjct: 351 VAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTL 410
Query: 413 VNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452
V++ ++++VT+AF+ L + G FY FG + L+L FI
Sbjct: 411 VSWSSSSIVTYAFNFLLEWSTQGT-FYVFGAVGGLALLFI 449
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| UNIPROTKB|F1S3R3 SLC2A12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 9.1e-27, Sum P(3) = 9.1e-27
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 178 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237
GW+YM+G PL V+ + M++LP SPR+L++ KG E+A L +LR ++
Sbjct: 199 GWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGQ----EEAASKVLGKLR--AV 247
Query: 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLY 295
D PTE E+ S + ++ + S ++F K ++IG LV F QITGQP++L+
Sbjct: 248 SD--PTE--ELTAIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILF 303
Query: 296 YAASILQSAGFSAASDATRVSILLGLFKLIMT 327
YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 304 YASTVLKSVGFQSNEAASLASTGVGVVKVIGT 335
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| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 378 YVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGIL 437
++ + +S GPI WLM SE+FPLR+RG G S+ N+ +N LVT F L + LG
Sbjct: 359 FISGFSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWASNWLVTITFLTLIEYLGPSGT 418
Query: 438 FYAFGVIAVLSLAFI 452
F+ + +I+V++L FI
Sbjct: 419 FFIYFIISVITLIFI 433
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| UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 178 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237
GW+YM+G PL V+ + M++LP SPR+L++ KG E+A L +LR +I
Sbjct: 199 GWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--AI 247
Query: 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLY 295
D+ TE E+ S + ++ + S ++F K ++IG LV F QITGQP++L+
Sbjct: 248 SDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLMLVFFVQITGQPNILF 303
Query: 296 YAASILQSAGFSAASDATRVSILLGLFKLIMT 327
YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 304 YASTVLKSVGFQSNEAASLASTGVGVVKVIST 335
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| MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 54/152 (35%), Positives = 87/152 (57%)
Query: 178 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237
GW+YM+G PL V+ + M++LP SPR+L++ KG ESA L +LR I
Sbjct: 199 GWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGQ----EESAGKVLRKLR--VI 247
Query: 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLY 295
D+ TE E+ S + ++ + S ++F K ++IG LV F Q TGQP++L+
Sbjct: 248 SDT--TE--ELTLIKSSLKDEYQYSFWDLFRSKDNMRTRILIGLTLVFFVQTTGQPNILF 303
Query: 296 YAASILQSAGFSAASDATRVSILLGLFKLIMT 327
YA+++L+S GF + A+ S +G+ K++ T
Sbjct: 304 YASTVLKSVGFQSNEAASLASTGVGVVKVVST 335
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| UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 6.7e-26, Sum P(3) = 6.7e-26
Identities = 54/152 (35%), Positives = 89/152 (58%)
Query: 178 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237
GW+YM+G PL V+ + M++LP SPR+L++ KG E+A L +LR ++
Sbjct: 199 GWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--AV 247
Query: 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLY 295
D+ TE E+ S + ++ + S ++F K ++IG LV F QITGQP++L+
Sbjct: 248 LDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILF 303
Query: 296 YAASILQSAGFSAASDATRVSILLGLFKLIMT 327
YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 304 YASTVLKSVGFQSNEAASLASTGVGVVKVIST 335
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| RGD|1310175 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 7.6e-26, Sum P(3) = 7.6e-26
Identities = 52/152 (34%), Positives = 87/152 (57%)
Query: 178 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237
GW+YM+G PL V+ + M++LP SPR+L++ KG E+A L +LR I
Sbjct: 199 GWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGQ----EEAAGKVLRKLR--VI 247
Query: 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLY 295
D+A +E+ S + ++ + S ++F K ++IG LV F Q TGQP++L+
Sbjct: 248 SDTA----EELTLIKSSLKDEYQYSFWDLFRSKDNMRTRILIGLTLVFFVQTTGQPNILF 303
Query: 296 YAASILQSAGFSAASDATRVSILLGLFKLIMT 327
YA+++L+S GF + A+ S +G+ K++ T
Sbjct: 304 YASTVLKSVGFQSNEAASLASTGVGVVKVVST 335
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6AWX0 | XYLL2_ARATH | No assigned EC number | 0.6940 | 0.9375 | 0.8946 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XIX.1554.1 | SubName- Full=Putative uncharacterized protein; (484 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 480 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 6e-58 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-55 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 8e-46 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-15 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 7e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-09 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 5e-06 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 9e-06 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 1e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-04 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.001 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 0.001 | |
| pfam05631 | 354 | pfam05631, DUF791, Protein of unknown function (DU | 0.001 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 6e-58
Identities = 136/446 (30%), Positives = 226/446 (50%), Gaps = 64/446 (14%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIES----PTLSGISWYDLSSVEIGLITSGSLYGALIG 110
L ALGG L+GYD G I+ L+ I S+V GLI S G LIG
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 111 SILAFNIADILGRRRELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGIGLGGYGI 168
S+ A + D GR++ L++ +L+++GAL+ A F +++VGR + G+G+G G +
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVG-GISVL 121
Query: 169 GSLLVDLVA-------------------------------------GWRYMYGASTPLAV 191
+ + +A GWR G A+
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 192 IMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTE 251
++ +G+ +LP SPRWL+ ++ E A + L +LRG S D E+ E
Sbjct: 182 LLLIGLLFLPESPRWLV---------LKGKLEEARAVLAKLRGVSDVDQ---EIQEEKDS 229
Query: 252 LSYVGEDKEVSLREVFHGKCLK-ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAAS 310
L E ++ S E+F GK ++ L++G L +FQQ+TG ++ YY+ +I ++ G S
Sbjct: 230 LERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS--- 286
Query: 311 DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA- 369
D+ V+I++G+ + T +A+ +V+R GRRPLLL G +G+ I +LG L +
Sbjct: 287 DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA 346
Query: 370 --VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSP 427
VA+V +LL++ + L +GP+ W+++SE+FPL +R + +++A N+ AN L+ F F
Sbjct: 347 GIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPI 406
Query: 428 LKDLLGAGILFYAFGVIAVLSLAFIF 453
+ +G + F F + VL + F+F
Sbjct: 407 ITGAIGGYV-FLVFAGLLVLFILFVF 431
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-55
Identities = 142/477 (29%), Positives = 231/477 (48%), Gaps = 58/477 (12%)
Query: 25 IGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLS 84
+ A+ + P+ + L L A+GGL++GYD G A
Sbjct: 1 MSDANLADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF 60
Query: 85 GIS-WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143
+ SS GL+ S L G IG++ A ++D GR++ L++ ALL+++GA++ L
Sbjct: 61 TSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL 120
Query: 144 AP---DFIIMVVGRFVFGIGIGLG------------------------------------ 164
A +++VGR + GIG+G+
Sbjct: 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180
Query: 165 GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRES 224
G+G G + ++ GWR G A ++ +G+++LP SPRWL+ + E
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV---------GKGRVEE 231
Query: 225 AISCLCRLRGQSIGDSA-PTEVDEILTELSYVGEDKEVSLREVF--HGKCLKALIIGAGL 281
A L RLRG S D E++ I + S + S +F + + L +G L
Sbjct: 232 ARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVL 291
Query: 282 VLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP 341
FQQ TG +++YY+ +I ++AG S A VSI++G T +A+ +V+R GRRP
Sbjct: 292 QWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP 350
Query: 342 LLLGGVSGIVISLFLLGSYYLFLD-----DVPAVAVVALLLYVGCYQLSFGPIGWLMISE 396
LLL G +G+ I LF+LG VA+V +LL++ + + +GP+ W+++SE
Sbjct: 351 LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE 410
Query: 397 VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453
+FPL LR +G+S+AV N+ AN +V F F + + +G G +F FG + VL L F++
Sbjct: 411 IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 8e-46
Identities = 124/460 (26%), Positives = 218/460 (47%), Gaps = 83/460 (18%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISW-YDLSSVEIGLITSGSLYGALIGSIL 113
L LGGLL+GYD S S+ + ++ + ++ +G + +L G +IG L
Sbjct: 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGR--------FVF-----GIG 160
++ GRR L +AA+L+ + AL +A P+F +G FV GIG
Sbjct: 75 GGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133
Query: 161 IGLGG------------------------YGI--GSLLVDLV---------------AGW 179
+GL + I G L+V V GW
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 180 RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 239
RYM+ + A++ M ++++P +PR+L+ + +E A L ++ G +
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLM---------SRGKQEQAEGILRKIMGNT--- 241
Query: 240 SAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAAS 299
A + EI L + + + + G + ++IG L +FQQ G VLYYA
Sbjct: 242 LATQALQEIKHSLDHGRKTGG---KLLMFGVGV--IVIGVMLSVFQQFVGINVVLYYAPE 296
Query: 300 ILQSAGFSAASDATRV-SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLG 358
I ++ G A++D + +I++G+ L T LA++ V++ GR+PL + G G+ I +F LG
Sbjct: 297 IFKTLG--ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354
Query: 359 SYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN 418
+ + + VA++++L YV + +S+GP+ W+++SE+FP +RG+ L++AV + AN
Sbjct: 355 TAF-YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIAN 413
Query: 419 ALVTFAF------SPLKDLLGAGILFYAFGVIAVLSLAFI 452
V++ F S L G ++ +G + VL+ F+
Sbjct: 414 YFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453
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Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 90/409 (22%), Positives = 165/409 (40%), Gaps = 93/409 (22%)
Query: 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV 151
+ ++ L S G L+GS + ++D GR++ L+L+ L+ V ++TA +P++ + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 152 VGRFVFGIGIG------------------------LGGYG--IGSLLVDLVA----GWRY 181
V R + G+GIG L +G +L+ LVA WR+
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRW 244
Query: 182 MYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSA 241
+ A + + + W++P SPRWL+ Q E A+ L R+ A
Sbjct: 245 LQLAVSLPTFLFFLLSWFVPESPRWLIS---------QGRIEEALKILQRI--------A 287
Query: 242 PTEVDEILTELSYVGEDKEVSLREVFHG-----------KCLKALIIGAGLVLFQQITGQ 290
++ E+ + +K++S + + K L++
Sbjct: 288 KINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT-------- 339
Query: 291 PSVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP-----LLL 344
+ YY + L + G + D + GL +L + +L+++RLGRR LLL
Sbjct: 340 -AFSYYGLVLDLGNLGGNIYLDL----FISGLVELPAKLITLLLIDRLGRRYTMAASLLL 394
Query: 345 GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRG 404
GV+ +++ LF+ Y A+AV+ +Q+ + L +E++P +R
Sbjct: 395 AGVA-LLLLLFVPVDLYFL---RTALAVLGKFGITSAFQMVY-----LYTAELYPTVVRN 445
Query: 405 RGLSVA-VLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452
G+ V + G+ SP LG LF + L+L
Sbjct: 446 LGVGVCSTMARVGS------IISPFLVYLGEKWLFLPLVLFGGLALLAG 488
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 76/364 (20%), Positives = 135/364 (37%), Gaps = 71/364 (19%)
Query: 34 IANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSS 93
+ N IR P + + L L+ GYD+ A + +P +S W L
Sbjct: 2 VQNNIRKQPLS---RYQWRAIILSFLIMLMDGYDL-----AAMGFAAPAISA-EW-GLDP 51
Query: 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVG 153
V++G + S L G G++ +AD +GRRR L+ + LL+ V L+ ALA + +++
Sbjct: 52 VQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLIL 111
Query: 154 RFVFGIGIGLG--------------------------GYGIGSLLVDLVA-------GWR 180
RF+ G+G+G GY IG+ + +A GWR
Sbjct: 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171
Query: 181 YMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 239
++ +++ + + +LP S +L+ K R +I
Sbjct: 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLV-----SKRPETVRR----------IVNAIAP 216
Query: 240 SAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAAS 299
E L E K + +F GK + ++ L + +Y+ +
Sbjct: 217 QMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTN 271
Query: 300 ILQSAGFSAASDATRVSILLGLFKLIMTGLAVL---VVERLGRRP----LLLGGVSGIVI 352
L + + LF +++ + +RLG R LLLG V +++
Sbjct: 272 WLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLV 331
Query: 353 SLFL 356
L
Sbjct: 332 GSTL 335
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 5/179 (2%)
Query: 275 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVV 334
L++ L F G +L Y LQ +A++A + L GL ++ L L+
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 335 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMI 394
+RLGRR LLL I + L LG L L A+ +VALLL +F P +
Sbjct: 236 DRLGRRRLLL----LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF-PALLTLA 290
Query: 395 SEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453
SE+ P RG + AL L D G G +F +A+L+ +
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 75/319 (23%), Positives = 135/319 (42%), Gaps = 32/319 (10%)
Query: 109 IGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--------IIMVVGRFVFGIG 160
+G+I+ + D +GR++ L++ L+ +G L+ L P + I++++ R + G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 161 IGLGGYGIGSLLVDLVA--GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDM 218
+G G +G +L + A G R YG+ + +G+ L A+ LLL +
Sbjct: 110 LG-GEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGL----LLAALTVLLLSYLLGD--- 161
Query: 219 QDLRESA------ISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL 272
L E +S + L G + + E + K + E K
Sbjct: 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNL-EETPVFEKAQEK-HKKKRGPIAETLT-KHR 218
Query: 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVL 332
K ++G GLV+ T Y + Q+ G SA + A V +L + I L+
Sbjct: 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSA-NSALLVLMLSLILFFITIPLSGA 277
Query: 333 VVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGC-YQLSFGPIGW 391
+ +R+GRRP+L+ ++ +L + LD L+L + + GP+G
Sbjct: 278 LSDRIGRRPVLIIF--TVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMG- 334
Query: 392 LMISEVFPLRLRGRGLSVA 410
+ E+FP +R G S+A
Sbjct: 335 SFLPELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 64/338 (18%), Positives = 115/338 (34%), Gaps = 26/338 (7%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+S EIGL+ + G + LA ++D GRRR L++ LL+ +G L+ A
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86
Query: 149 IMVVGRFVFGIGIGLGGYGIGSLLVDLVAGWRY-----MYGASTPLAVIMGMGMW-WLPA 202
+++V R + G+G G +L+ D + A L +G + L +
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 203 SPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVS 262
W + AI L ++ P + +
Sbjct: 147 LFGWRAAFLI-----------LAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPA 195
Query: 263 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLF 322
+ + L L+ +L Y + G SA + + L
Sbjct: 196 WKLLLRDPVLWLLLALLLFGFAFFA-----LLTYLPLYQEVLGLSALLAGLLLGLAGLLG 250
Query: 323 KLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCY 382
+ L L +RLGRR LL + ++++ L L ++ ++ LL +G
Sbjct: 251 AIGRLLLGRL-SDRLGRRRRLLLALLLLILAALGL---ALLSLTESSLWLLVALLLLGFG 306
Query: 383 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 420
P ++S++ P RG + AL
Sbjct: 307 AGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
L LG L G D G S A + LS+ + GLI S G +GS+L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLL-------AEDLGLSASQAGLIVSAFSLGYALGSLL 53
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSLLV 173
A ++D GRRR L+L LL+ +G+L+ A A +++VGRF+ G+G G +L+
Sbjct: 54 AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113
Query: 174 DLV 176
+
Sbjct: 114 EWF 116
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+ L++V+ + S +L G+++ D GRR ++ + +L+ G L AP +I
Sbjct: 42 FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101
Query: 149 IMVVGRFVFGIGIGLGGYGIGSLLV 173
M + R V GIG+G G YG + V
Sbjct: 102 TMFIARLVIGIGMG-GEYGSSAAYV 125
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
L ++G S + G L G++L +AD +GR+R LI++ L+ + +L TA A DF +
Sbjct: 47 LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL 106
Query: 151 VVGRFVFGIGIG 162
+V R + G+G+G
Sbjct: 107 LVARLLTGVGLG 118
|
Length = 406 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 73 CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132
T + +DL+ E LI G I S+ A + LG + ++L L
Sbjct: 27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL 86
Query: 133 LYLVGALVTALAP---DFIIMVVGRFVFGIGIGL 163
LY VGA + A + +V F+ GIGL
Sbjct: 87 LYAVGAALFWPAASSKSYGFFLVALFILASGIGL 120
|
Length = 422 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 33/138 (23%)
Query: 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRF 155
G + + G +G+ L + L RRR L+ L++V L++ALAP F ++++ R
Sbjct: 50 AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109
Query: 156 VFGIGIGLGGYGIGSLLVDLVA---------------------------------GWRYM 182
+ G+ G+ +L LV GWR
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169
Query: 183 YGASTPLAVIMGMGMWWL 200
+ A LA++ + +W L
Sbjct: 170 FLAIAVLALLALLLLWKL 187
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFV 156
GL+ +G G LI S L+ + D GR+ L++ ++++ + AL+ + ++++ RF+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 157 FGIGIGLGGYGIGSLLVDLVAGW 179
G G +L+ D+
Sbjct: 61 QGFGAAFALVAGAALIADIYPPE 83
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+ L++V+ + S + G +L + D GRR ++++ +L+ VG L AP +
Sbjct: 50 FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW 109
Query: 149 IMVVGRFVFGIGIGLGGYG 167
+ + R V G+G+ G YG
Sbjct: 110 TLFIARLVIGMGMA-GEYG 127
|
Length = 496 |
| >gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 85 GISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144
G S D+ + I S L+G ++GS+ AD GR+R + +LY + + +T +
Sbjct: 65 GFSKGDIGILFIAGFGSSMLFGTIVGSL-----ADKQGRKRACLTYCILY-ILSCITKHS 118
Query: 145 PDFIIMVVGRFVFGIGIGL 163
P++ ++++GRF+ GI L
Sbjct: 119 PNYKVLMIGRFLGGIATSL 137
|
This family consists of several eukaryotic proteins of unknown function. Length = 354 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.98 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.98 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.98 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.98 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.91 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.9 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.89 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.89 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.88 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.86 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.84 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.84 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.83 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.8 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.8 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.79 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.78 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.77 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.74 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.73 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.72 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.7 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.69 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.67 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.65 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.65 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.61 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.57 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.56 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.55 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.52 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.52 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.52 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.52 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.52 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.5 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.5 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.5 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.5 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.49 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.49 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.48 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.48 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.48 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.47 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.47 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.46 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.46 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.45 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.45 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.45 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.45 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.45 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.44 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.44 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.44 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.44 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.44 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.43 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.43 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.43 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.42 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.41 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.4 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.4 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.39 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.39 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.38 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.38 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.38 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.37 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.36 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.35 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.34 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.34 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.31 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.31 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.3 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.29 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.29 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.29 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.29 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.28 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.28 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.28 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.28 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.27 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.27 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.27 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.26 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.24 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.24 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.23 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.23 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.21 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.21 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.2 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.19 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.19 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.17 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.17 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.17 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.17 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.15 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.14 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.14 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.13 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.12 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.11 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.11 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.1 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.09 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.07 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.05 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.04 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.04 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.04 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.0 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.94 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.92 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.91 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.9 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.85 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.78 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.77 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.68 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.68 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.67 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.65 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.63 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.6 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.56 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.53 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.51 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.5 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.48 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.45 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.45 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.43 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.4 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.38 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.37 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.34 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.31 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.23 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.17 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.14 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.12 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.07 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.07 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.06 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.05 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.03 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.93 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.88 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.85 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.81 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.78 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.68 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.68 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.64 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.64 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.56 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.5 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.49 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.48 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.47 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.05 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.04 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.0 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.91 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.75 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.75 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.57 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.53 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.27 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.13 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.95 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.87 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.85 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.77 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.66 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.12 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 94.8 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.76 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.67 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 93.89 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.85 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.76 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.42 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.89 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.19 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 91.99 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.51 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.13 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 88.21 | |
| PF07857 | 254 | DUF1632: CEO family (DUF1632); InterPro: IPR012435 | 83.81 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 83.69 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 83.59 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 82.02 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 81.28 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=312.80 Aligned_cols=413 Identities=29% Similarity=0.497 Sum_probs=335.5
Q ss_pred hhhHHhHHHHhhhhhcccccccccccccccccCC---CCCCCcccc--CCh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 011657 48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESP---TLSGISWYD--LSS----VEIGLITSGSLYGALIGSILAFNIA 118 (480)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~----~~~~~~~s~~~~~~~~~~~~~g~l~ 118 (480)
++.....+..+++.+-+||+.+.+|+..+.+.+- .+.+. ++ .++ ...+.+.+++.+|.++|+++.|.++
T Consensus 7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r--~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIER--YGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677799999999999886665521 11111 23 333 3568889999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHhH------------------------------hH
Q 011657 119 DILGRRRELILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGL------------------------------GG 165 (480)
Q Consensus 119 dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~g~g~------------------------------~g 165 (480)
||+|||..+.++.++..++.++..+ ++++++++++|++.|+..|. +|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 9999999999998888888877666 47899999999999999888 34
Q ss_pred Hhhhhhhh-----hhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHH-hcccccCchhhhHHHHHHHHHHHhCCCCCC
Q 011657 166 YGIGSLLV-----DLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL-CAMKRKGDMQDLRESAISCLCRLRGQSIGD 239 (480)
Q Consensus 166 ~~~g~~l~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (480)
..+|..+. .....|++.+.+..+++++..+...++||||||+.. ++ +.++|++.++++++.++++
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~---------~~~~A~~sl~~y~G~~~~~ 235 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG---------DEEEARKALKFYRGKEDVE 235 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC---------CHHHHHHHHHHHhCCCcch
Confidence 44443332 123379999999999999999999999999999987 66 8899999999999988765
Q ss_pred CChhhHHHHHHhhhcccccccccHHHHhhhhh-hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHH
Q 011657 240 SAPTEVDEILTELSYVGEDKEVSLREVFHGKC-LKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSIL 318 (480)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (480)
...++..++.++.+. ++++..+++++++++. ++...+.+.+....++++.+...+|...++++.|+ +..++.+....
T Consensus 236 ~~~e~~~~e~~~~~~-~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~-~~~~a~~an~~ 313 (485)
T KOG0569|consen 236 AEIEEMLREIEEEEL-EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF-TPEEAQYANLG 313 (485)
T ss_pred hHHHHHHHHHHHhcc-ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 544443333332222 2246678999999864 45567778888899999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCc-hh---HHHHHHHHHHHHHhcccccccceee
Q 011657 319 LGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV-PA---VAVVALLLYVGCYQLSFGPIGWLMI 394 (480)
Q Consensus 319 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
.++..++..+++.++.||+|||++++.+..++.+..+++.......... .| ..+...+.+...+..+.+|+.+-+.
T Consensus 314 ~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~ 393 (485)
T KOG0569|consen 314 IGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIG 393 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHH
Confidence 9999999999999999999999999999998888877776543332222 22 3356667778888999999999999
Q ss_pred cccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhhhhccC
Q 011657 395 SEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGLRLRRS 474 (480)
Q Consensus 395 ~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (480)
+|++|++.|+.+.++..+++.+..++....+..+.+..|. ..|+++.+.+.+..+..+++.||||+|+.++..++.++.
T Consensus 394 aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 394 AELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999997 788999999999999999999999999988877665544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=313.30 Aligned_cols=391 Identities=16% Similarity=0.167 Sum_probs=285.2
Q ss_pred hhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 011657 48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL 127 (480)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 127 (480)
+..|.++++++++.+..+++...++.++|.+.++ ++++..+.+++.+++.++++++++++|+++||+|||+++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l 235 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL 235 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 3455566777888889999999999999999887 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhh----
Q 011657 128 ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLV---- 173 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~---- 173 (480)
+++++++++++++++++++++.++++|+++|++.|+ +|.+++..+.
T Consensus 236 ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 236 LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 3333333221
Q ss_pred h------------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCC-
Q 011657 174 D------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS- 240 (480)
Q Consensus 174 ~------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (480)
. ...+||+.+++.++++++.++..+++||+|+|+..++ +.+++.+.++++++.+....
T Consensus 316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~g---------r~~eA~~iL~~i~~~n~~~~~ 386 (742)
T TIGR01299 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENG---------KHDEAWMILKLIHDTNMRAKG 386 (742)
T ss_pred HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcC
Confidence 1 1137999999999888888888888999999999888 78889999998876553221
Q ss_pred Chh-h--HHHHHHhhh-----c-ccccc-----------------cccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHH
Q 011657 241 APT-E--VDEILTELS-----Y-VGEDK-----------------EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVL 294 (480)
Q Consensus 241 ~~~-~--~~~~~~~~~-----~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (480)
.+. . .+....... + ++... ...++++++.+.++..++...+. ++....++.+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~w-f~~~~~yygl~ 465 (742)
T TIGR01299 387 HPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW-FTLSFGYYGLS 465 (742)
T ss_pred chhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 111 0 000000000 0 00000 01355566666655555544444 44455667888
Q ss_pred HhHHHHHHhc------------------------------------------CC-------C-C------------C---
Q 011657 295 YYAASILQSA------------------------------------------GF-------S-A------------A--- 309 (480)
Q Consensus 295 ~~~~~~~~~~------------------------------------------g~-------~-~------------~--- 309 (480)
.|.|.+++.. |+ . + .
T Consensus 466 ~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (742)
T TIGR01299 466 VWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTF 545 (742)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchh
Confidence 8888775431 00 0 0 0
Q ss_pred -------------------------------------------------cchHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 011657 310 -------------------------------------------------SDATRVSILLGLFKLIMTGLAVLVVERLGRR 340 (480)
Q Consensus 310 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 340 (480)
........+..++.+++.++.|+++||+|||
T Consensus 546 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr 625 (742)
T TIGR01299 546 FKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL 625 (742)
T ss_pred hhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 0123445677789999999999999999999
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHh
Q 011657 341 PLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 420 (480)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i 420 (480)
+++.++.++.+++++++.+. .+....++..+++.++.. +..+..+++++|.+|++.|++++|+.++...+|+++
T Consensus 626 ~~l~~~~~lsai~~ll~~~~-----~s~~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaii 699 (742)
T TIGR01299 626 RMLAGSMVLSCISCFFLSFG-----NSESAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVL 699 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877766542 222333333333333333 334566689999999999999999999999999999
Q ss_pred HhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCCh
Q 011657 421 VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSF 463 (480)
Q Consensus 421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (480)
+|.+.+.+.+. +...++++.+++.++++++.++ +||++++.
T Consensus 700 gp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~ 740 (742)
T TIGR01299 700 GILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCcccc
Confidence 99999988774 4556777777777777666654 58888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=301.68 Aligned_cols=412 Identities=38% Similarity=0.584 Sum_probs=323.4
Q ss_pred hhHHhHHHHhhhhhccccc--ccccccccccccCCCCCCCccccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011657 49 AAILPFLFPALGGLLYGYD--IGSTSCATISIESPTLSGISWYDLSS--VEIGLITSGSLYGALIGSILAFNIADILGRR 124 (480)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 124 (480)
..........++.+..+++ .+..+++...+.++....+ ...+. .+.+|+.+.+.++..++++++|+++|++|||
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk 119 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK 119 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445556667788888887 6677777777776533222 22222 5679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhhh
Q 011657 125 RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLVD 174 (480)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~~ 174 (480)
+.++++.+++.+|.+++++++|+.+++++|+++|+|.|+ +|..++..+..
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998 44444422222
Q ss_pred hh----hhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Q 011657 175 LV----AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT 250 (480)
Q Consensus 175 ~~----~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (480)
.. .+||..+.+..+++++..+..+++||+|+|+.+++ +.+++++.++++++.+.. +...+.+....
T Consensus 200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g---------~~~~a~~~l~~l~g~~~~-~~~~~~~~~~~ 269 (513)
T KOG0254|consen 200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG---------RLEEAKRSLKRLRGLSPE-DVEVELELLKI 269 (513)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCc-chHHHHHHHHH
Confidence 21 27999999999999997777889999999999977 899999999999995522 22222222221
Q ss_pred h-h-hcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Q 011657 251 E-L-SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTG 328 (480)
Q Consensus 251 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 328 (480)
. . +......+..++++++....++..+...+..+.++++.+...+|.+.+++..|..++. .......++..+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~ 347 (513)
T KOG0254|consen 270 KLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTL 347 (513)
T ss_pred HHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHH
Confidence 1 1 1111122224667777556777888899999999999999999999999999983333 6777888888889999
Q ss_pred HHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC-------CchhHHHHHHHHHHHHHhcccccccceeecccCChh
Q 011657 329 LAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-------DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR 401 (480)
Q Consensus 329 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 401 (480)
++.++.||+|||+.++.+...+.++.++++....... ...+..+...+++...+..++.|+.+.+.+|.+|.+
T Consensus 348 ~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 348 VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 9999999999999999999999999998886654432 234566777778888899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH-hcCCCCCCCCCChhhhhhhhhccC
Q 011657 402 LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA-FIFXXXXXXXXSFQRQRGLRLRRS 474 (480)
Q Consensus 402 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 474 (480)
.|+.+.++...++.+.+.+.......+.+..+....|..++.++.+... ..+++.||+|+++.++.+...++.
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 9999999999999998888877777777665534567777776666666 778889999999999887765544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=303.10 Aligned_cols=397 Identities=20% Similarity=0.239 Sum_probs=272.2
Q ss_pred HhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 011657 52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131 (480)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 131 (480)
.++.++.++.+.+++|...++.+.|.+..+....+ .+.+..+.+++.+.+.+++.++++++|+++||+|||+++.++.
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~ 93 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGK--GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34466678889999999999999888765422111 3567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCc------hHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhh--
Q 011657 132 LLYLVGALVTALAPD------FIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLV-- 173 (480)
Q Consensus 132 ~~~~~~~~~~~~~~~------~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~-- 173 (480)
+++.+++++++++++ ++.++++|+++|++.|. +|..++..+.
T Consensus 94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 78999999999999997 3333333322
Q ss_pred --h----------------------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhH-HHHHHH
Q 011657 174 --D----------------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLR-ESAISC 228 (480)
Q Consensus 174 --~----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~-~~~~~~ 228 (480)
. ...+||++|.+.++++++..+..+++||||+|+..++ +. +++.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~---------~~~~~a~~~ 244 (502)
T TIGR00887 174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVA---------KDVEQAASD 244 (502)
T ss_pred HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC---------cchHHHHHH
Confidence 1 0127999999999888887777889999999998776 33 345555
Q ss_pred HHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhh---hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcC
Q 011657 229 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC---LKALIIGAGLVLFQQITGQPSVLYYAASILQSAG 305 (480)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 305 (480)
+++.++.+..++ .++.++..+ +++..+.+++++++++. .++..+.....++.....++....+.|.++++.|
T Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G 319 (502)
T TIGR00887 245 MSAVLQVKIEAE-PDEVEKAST----AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG 319 (502)
T ss_pred HHHHhccccccC-cccccchhc----cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHc
Confidence 555543322111 111111000 01112235777776432 2122232222222222233345566888888888
Q ss_pred CCCCcchHH------------HHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHH
Q 011657 306 FSAASDATR------------VSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVV 373 (480)
Q Consensus 306 ~~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (480)
+ +..+++. ......++.+++.++.++++||+|||+++..+..+.++++.++...... ........
T Consensus 320 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 396 (502)
T TIGR00887 320 Y-SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH--LSTHGFLA 396 (502)
T ss_pred C-CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--cchhHHHH
Confidence 7 4432211 2334455677788999999999999999888887777766655543211 01111122
Q ss_pred HHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh----------CccHHHHHHHH
Q 011657 374 ALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL----------GAGILFYAFGV 443 (480)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----------g~~~~~~~~~~ 443 (480)
...+....+..+..+..+.+..|.+|++.|+++.|+.+.++.++++++|.+.+.+.+.. ++...++++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 476 (502)
T TIGR00887 397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL 476 (502)
T ss_pred HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHH
Confidence 22222233344556677788999999999999999999999999999999999998843 34457788888
Q ss_pred HHHHHHHhcCCCCCCCCCChhhhhh
Q 011657 444 IAVLSLAFIFXXXXXXXXSFQRQRG 468 (480)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (480)
+++++.+.. ++.||+|+++.+|.+
T Consensus 477 ~~~~~~i~~-~~lpEt~~~~leei~ 500 (502)
T TIGR00887 477 FMFLGILFT-LLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHh-eEeccCCCCCHHhhh
Confidence 887776654 457999998876654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=295.18 Aligned_cols=406 Identities=28% Similarity=0.505 Sum_probs=282.8
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 129 (480)
..+.++..++.+.+++|...+++..|.++++.... .++++.+..+.+++.+++.++..++++++|+++||+|||+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~ 90 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 33445556788999999999999999887763211 01148899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc------------CchHHHHHHHHHHHHHHhH------------------------------hHHh
Q 011657 130 AALLYLVGALVTALA------------PDFIIMVVGRFVFGIGIGL------------------------------GGYG 167 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~g~g~------------------------------~g~~ 167 (480)
+.++++++.+.++++ ++++.++++|+++|++.|. +|..
T Consensus 91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 170 (479)
T PRK10077 91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL 170 (479)
T ss_pred HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence 999999999888763 2256788999999999987 3333
Q ss_pred hhhhh----hh-------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCC
Q 011657 168 IGSLL----VD-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 236 (480)
Q Consensus 168 ~g~~l----~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (480)
++..+ .. ...+||+.|++.+++.++..+..+++||+|+|+..++ +.+++++..++..+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~---------~~~~~~~~~~~~~~~~ 241 (479)
T PRK10077 171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRG---------KQEQAEGILRKIMGNT 241 (479)
T ss_pred HHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcC---------CHHHHHHHHHHHcCCh
Confidence 32221 10 1238999999998888876667788999999876555 4445555444443322
Q ss_pred CCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHH
Q 011657 237 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVS 316 (480)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (480)
.. ....++.......+. ...+..+. ..............+....+++...++.|.+.++.|. +........
T Consensus 242 ~~---~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~-~~~~~~~~~ 312 (479)
T PRK10077 242 LA---TQALQEIKHSLDHGR----KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA-STDIALLQT 312 (479)
T ss_pred hH---HHHHHHHHHHHHHhh----hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC-CCchHHHHH
Confidence 11 111111111100000 00011111 0111122222233344445555667788998888888 666677777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecc
Q 011657 317 ILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISE 396 (480)
Q Consensus 317 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
...++..+++.++.++++||+|||+++..+..+.+++.+++...... ...........+++..++...+.|..+.++.|
T Consensus 313 ~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 391 (479)
T PRK10077 313 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 391 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhccccchhHHHhHh
Confidence 88889999999999999999999999999988888877766543221 11222333334444444554556777799999
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH------HhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhhh
Q 011657 397 VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK------DLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGLR 470 (480)
Q Consensus 397 ~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (480)
.+|++.|+++.|+.+..++++.++++.+.+.+. +..++...|++.+++++++.++.+.+.+|+|+++.++.++.
T Consensus 392 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 392 IFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 999999999999999999999998877765443 56778888888888888888877777899998887776665
Q ss_pred hccCC
Q 011657 471 LRRSR 475 (480)
Q Consensus 471 ~~~~~ 475 (480)
.++.+
T Consensus 472 ~~~~~ 476 (479)
T PRK10077 472 WEPET 476 (479)
T ss_pred Hhhcc
Confidence 54443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=292.63 Aligned_cols=405 Identities=34% Similarity=0.564 Sum_probs=283.6
Q ss_pred hHHhHHHHhhhhhcccccccccccccccccCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 011657 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI 128 (480)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 128 (480)
.+...++..++.++.+++...+++..+.+..+...+ +..-+.+..+.+++.+.+.++..++++++|+++||+|||++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~ 105 (481)
T TIGR00879 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105 (481)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence 344445667777889999999999998887661100 0001234899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhh--
Q 011657 129 LAALLYLVGALVTALAP---DFIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLV-- 173 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~-- 173 (480)
++.+++.++.+++.++. +++.+++.|+++|++.+. +|..++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 185 (481)
T TIGR00879 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG 185 (481)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996643 456899999999999887 4555555444
Q ss_pred -h---hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhh-HHHH
Q 011657 174 -D---LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEI 248 (480)
Q Consensus 174 -~---~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 248 (480)
. ...+||+.|++.++..++..+..+++||+|++...++ +.+++.+..++..+.+.......+ ....
T Consensus 186 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
T TIGR00879 186 KVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGEDKELLDELELI 256 (481)
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 1 2239999999977777777777788999998765444 222233333333222211111000 0000
Q ss_pred HHhhhcccccccccHHHHhhhh--hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHH
Q 011657 249 LTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 326 (480)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 326 (480)
......+.+..+..+++.++.. ..++.+....+.++..........++.|.+.++.|. +..+.+.......++.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 335 (481)
T TIGR00879 257 DIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-STDHAFLVSIIVGAVNFAF 335 (481)
T ss_pred HHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHH
Confidence 0000000111112233443322 134444445555555555556677888999899998 6788888999999999999
Q ss_pred HHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCc-----hhHHHHHHHHHHHHHhcccccccceeecccCChh
Q 011657 327 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV-----PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR 401 (480)
Q Consensus 327 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 401 (480)
.++.++++||++||+.+..+..+.+++++++.......... ....+....++.+++..+..+....++.|.+|++
T Consensus 336 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (481)
T TIGR00879 336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS 415 (481)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence 99999999999999999888777777766655321111111 3334444455555566666677778889999999
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChh
Q 011657 402 LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQ 464 (480)
Q Consensus 402 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (480)
.|+++.|+.+...+++++++|.+.+.+.++.|+...|++.+++++++.++.+++.+|+|+++.
T Consensus 416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 416 LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 999999999999999999999999999999999999999999988888887777777776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=280.45 Aligned_cols=360 Identities=21% Similarity=0.279 Sum_probs=255.3
Q ss_pred cccccccCCCCCCCccccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHH
Q 011657 73 CATISIESPTLSGISWYDLS---SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII 149 (480)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (480)
+..+.+.+| +|++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++++|++.
T Consensus 110 ~~~~~i~~e-------~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (505)
T TIGR00898 110 TFSSTIVTE-------WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTV 182 (505)
T ss_pred cccccEEEE-------ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 566777777 8998 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhH------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhc
Q 011657 150 MVVGRFVFGIGIGL------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 199 (480)
Q Consensus 150 l~~~r~l~G~g~g~------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 199 (480)
+++.|++.|++.+. +|..+++.+.....+||+.|++.+++.++..+..++
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887 444444444444447999999999998887777788
Q ss_pred ccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHH
Q 011657 200 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGA 279 (480)
Q Consensus 200 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (480)
+||+|+|+..++ +.+++.+.+++..+.+......+......++ +..++.++...+++++++..+...+..
T Consensus 263 ~~esp~~l~~~~---------~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (505)
T TIGR00898 263 VPESPRWLISQG---------RIEEALKILQRIAKINGKKLPAEVLSLSLEK-DLSSSKKQYSFLDLFRTPNLRKTTLCL 332 (505)
T ss_pred cCCChHHHHHCC---------CHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh-hhhhccCCCcHHHHhCChHHHHHHHHH
Confidence 999999998777 5566666666554433222211111111111 111112235778899888777665554
Q ss_pred HHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHH
Q 011657 280 GLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGS 359 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 359 (480)
.+.++.....+ +..+.+....+. + ........++..+++.++.+++.||+|||+.+..+.++.+++++++..
T Consensus 333 ~~~~~~~~~~~----~~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~ 404 (505)
T TIGR00898 333 MMLWFTTAFSY----YGLVLDLGNLGG-N---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF 404 (505)
T ss_pred HHHHHHHHHHH----HHHhccccccCC-C---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 44443322111 122222333343 2 345556677888899999999999999999999888877777666543
Q ss_pred HhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHH
Q 011657 360 YYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFY 439 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~ 439 (480)
. .....+......++...+... ..+..+.+..|.+|++.|+++.|+.++...+|++++|.+.+ .+..++..+++
T Consensus 405 ~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~ 478 (505)
T TIGR00898 405 V---PVDLYFLRTALAVLGKFGITS-AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLV 478 (505)
T ss_pred c---CCCchHHHHHHHHHHHHHHHH-HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHH
Confidence 2 112223233333333233222 33455688999999999999999999999999999999988 44456667888
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChh
Q 011657 440 AFGVIAVLSLAFIFXXXXXXXXSFQ 464 (480)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (480)
+++++.+++.++.++ .||+++++.
T Consensus 479 ~~~~~~~~~~~~~~~-lpet~~~~l 502 (505)
T TIGR00898 479 LFGGLALLAGILTLF-LPETKGVPL 502 (505)
T ss_pred HHHHHHHHHHHHHHc-CcCCCCCCC
Confidence 888877777666554 678877654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=246.99 Aligned_cols=385 Identities=18% Similarity=0.228 Sum_probs=281.2
Q ss_pred HHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
+....+++.+....-..+-+.|..... .+.+..|..+++.....|..+++..||.++|++|||+.+.+.....
T Consensus 81 ~~ag~gwmad~m~~m~~s~i~~~l~~~-------w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 81 FVAGMGWMADAMEMMLLSLILPALDEV-------WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhh-------hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 334666666666666666667776665 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------hHHhhhhhhhh---hhhhhHHHH
Q 011657 135 LVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------GGYGIGSLLVD---LVAGWRYMY 183 (480)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------~g~~~g~~l~~---~~~~wr~~f 183 (480)
++...+.+.++|+..+.+.|.+.|+|.|+ +|.+....++. ...||||..
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l 233 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLL 233 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999998 33333333321 223999999
Q ss_pred hchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCCh--------hhHHHHH----Hh
Q 011657 184 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAP--------TEVDEIL----TE 251 (480)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~----~~ 251 (480)
.....+..+.....+++|||||++..++ ++++|.+.++++...+...... .+.+++. +.
T Consensus 234 ~~~~~pl~~~a~f~~w~~ESpRf~~~~G---------~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~ 304 (528)
T KOG0253|consen 234 FTSSTPLMFAARFLVWVYESPRFYLAKG---------DDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDS 304 (528)
T ss_pred HHHHhHHHHHHHHHhhcccCcchhhhcC---------ChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhh
Confidence 9988888888888999999999999988 8889988888876544332111 1111111 11
Q ss_pred hhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcC---CC----------------CCcch
Q 011657 252 LSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAG---FS----------------AASDA 312 (480)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~----------------~~~~~ 312 (480)
.....++.+.+..+++..+.++..++...+++...+..+..+ .....+.+... .. +...-
T Consensus 305 ~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~V-Llttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d 383 (528)
T KOG0253|consen 305 KSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSV-LLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKD 383 (528)
T ss_pred hhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhccCccccchhcchhHHHhhhcCCccchhH
Confidence 112234445677788876666666665555555444333222 22222222211 00 12223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccce
Q 011657 313 TRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWL 392 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (480)
..-..+..+..++|.++.+++.||+|||+.+....+++++..+++... ..........+..-.+.+.++ ...+.
T Consensus 384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~f-qvaYv 457 (528)
T KOG0253|consen 384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAF-QVAYV 457 (528)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchh-eEEEE
Confidence 344677888999999999999999999999999888888877766542 223333334444445555555 46679
Q ss_pred eecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChh
Q 011657 393 MISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQ 464 (480)
Q Consensus 393 ~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (480)
|..|++|+..|+++.|.+...+.+|+++.|++. +........+..+++++++++.+...++.-|+|+|..
T Consensus 458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999999999999999999999887 5554555667888899999998888888889998753
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=254.31 Aligned_cols=339 Identities=21% Similarity=0.236 Sum_probs=263.1
Q ss_pred hHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 011657 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 132 (480)
.++.+.++.|..+.+.......+|++++| |++|..+.|++.|.|.+++.++.++...+.||+.||++++..+.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 33445777788899999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhh
Q 011657 133 LYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAG 178 (480)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~ 178 (480)
++.++++++++++||+.++++|++.|+..|. +|..+|.++.+.. |
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-G 165 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-G 165 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-h
Confidence 9999999999999999999999999999998 7888888888887 9
Q ss_pred hHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccc
Q 011657 179 WRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE 257 (480)
Q Consensus 179 wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (480)
||..|++.+.++++ .+..+..+| |+.. ..+..
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP--~~~~---------------------------------------------~~~~~ 198 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLP--PSEI---------------------------------------------SGSLP 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CccC---------------------------------------------CCCCC
Confidence 99999999999998 455666788 2100 00011
Q ss_pred cccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011657 258 DKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL 337 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 337 (480)
.+..+..+.+|++..+..++...+.+..++ ..++|..|.+.+..|+ +....++....+++++++|+.++|++.||
T Consensus 199 ~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F---~~ftYi~P~L~~v~g~-s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr- 273 (394)
T COG2814 199 GPLRTLLRLLRRPGVLLGLLATFLFMTGHF---ALYTYIRPFLESVAGF-SVSAVSLVLLAFGIAGFIGNLLGGRLADR- 273 (394)
T ss_pred cchhHHHHHhcCchHHHHHHHHHHHHcchh---hhHHhHHHHHHHccCC-CHhHHHHHHHHHHHHHHHHHHHHhhhccc-
Confidence 112235567777766666555554444333 3555566666666777 89999999999999999999999999999
Q ss_pred cCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHH
Q 011657 338 GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGA 417 (480)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g 417 (480)
+.|+.+.....+.++....+.+. ..+.+..+....+.+....... ........+..| +.+..+.+++....++|
T Consensus 274 ~~~~~l~~~~~l~a~~~l~l~~~----~~~~~~~~~~~~~wg~a~~~~~-~~~~~~~a~~~p-~~~~~a~sl~~aa~nlg 347 (394)
T COG2814 274 GPRRALIAALLLLALALLALTFT----GASPALALALLFLWGFAFSPAL-QGLQTRLARLAP-DAADLAGSLNVAAFNLG 347 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhhhhh-hHHHHHhcccCC-CchHHHHHHHHHHHHHH
Confidence 88888888777777766665542 2333333333333222222222 222234444334 78999999999999999
Q ss_pred HHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCC
Q 011657 418 NALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXX 457 (480)
Q Consensus 418 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 457 (480)
..+|..+.|.+.|+.|+....++.+.+.+++.++.+...+
T Consensus 348 ia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 348 IALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888888877665433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=272.64 Aligned_cols=360 Identities=18% Similarity=0.229 Sum_probs=236.3
Q ss_pred HHHhhhhhcccccccccccccccccCCCCCCCccccCC--hh--HHHH--HHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 011657 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLS--SV--EIGL--ITSGSLYGALIGSILAFNIADILGRRRELI 128 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~--~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 128 (480)
+...++.++++||..+++...|.+.++ |+.+ +. ..+. +.++.++++.++++++|+++||+|||+++.
T Consensus 19 ~~~~~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 91 (490)
T PRK10642 19 TAASLGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 455778899999999999999998877 5322 21 1222 257888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCchHH--------HHHHHHHHHHHHhH------------------------------hHHhhhh
Q 011657 129 LAALLYLVGALVTALAPDFII--------MVVGRFVFGIGIGL------------------------------GGYGIGS 170 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~g~g~------------------------------~g~~~g~ 170 (480)
+++++++++++++++++|++. ++++|+++|++.|+ +|..+|+
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 88999999999987 3444444
Q ss_pred hhh----h-------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCC
Q 011657 171 LLV----D-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 239 (480)
Q Consensus 171 ~l~----~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (480)
.+. . ...|||+.|++.++++++..+....+||+|+|...++ +.++.. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~---------~~~~~~-------~~---- 231 (490)
T PRK10642 172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVD---------KLEQGD-------RE---- 231 (490)
T ss_pred HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHH---------hhhhhc-------cc----
Confidence 322 1 1248999999988776665666677899998753322 000000 00
Q ss_pred CChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHH
Q 011657 240 SAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSIL 318 (480)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 318 (480)
. ..+.++.++++++++ +++.........+ .....++....|.|.+++ ..|. +..+..+....
T Consensus 232 -----------~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~-s~~~~~~~~~~ 294 (490)
T PRK10642 232 -----------G---LQDGPKVSFKEIATK-HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHY-SEDHGVLIIIA 294 (490)
T ss_pred -----------c---ccccccCCHHHHHHH-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 0 001122345666654 2233322222222 222334456668888875 4577 66677777788
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccC
Q 011657 319 LGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF 398 (480)
Q Consensus 319 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
..++.+++.++.|+++||+|||+.+..+.++..+....+.... ...+....+...++...+..... .....+..|.+
T Consensus 295 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~ 371 (490)
T PRK10642 295 IMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--NSNVIGLIFAGLLMLAVILNCFT-GVMASTLPAMF 371 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
Confidence 8888999999999999999999988776654333222211111 11222222222222222222222 23336777899
Q ss_pred ChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-ccHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 011657 399 PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXXXXXXXXS 462 (480)
Q Consensus 399 p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (480)
|++.|+++.|+.+.+..+++.++|.+.+++.+..+ +...+++..+.++++.+..++ .||++++
T Consensus 372 p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~ 435 (490)
T PRK10642 372 PTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANR 435 (490)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCC
Confidence 99999999998777777788999999999988655 455555555555555554443 4666544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=246.25 Aligned_cols=361 Identities=16% Similarity=0.149 Sum_probs=260.5
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 130 (480)
+-+++.+.+++..+.+.+-.++.+.|.+.+| .++|.+|.|++.+++.+.|+++..+.|.++||.+.|+.+.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 3445666888999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH------------------------------hHHhhh------hhhhh
Q 011657 131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL------------------------------GGYGIG------SLLVD 174 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g------~~l~~ 174 (480)
+++.++.+++++++++.+.+.+.-+++|...|. +|..+. +.+..
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 999999999999999999999999999998887 232222 23333
Q ss_pred hhhhhHHHHhchhHHHHHH-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhh-
Q 011657 175 LVAGWRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL- 252 (480)
Q Consensus 175 ~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (480)
.. +||..|++.+++++++ ++.++..+++|+-.-... .++..++..+.
T Consensus 181 ~~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~------------------------------ie~~~~d~~e~~ 229 (448)
T COG2271 181 HG-GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP------------------------------IEEYRGDPLEIY 229 (448)
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC------------------------------HHHhhcCchhhh
Confidence 33 9999999999999985 555666788885221100 01111000000
Q ss_pred hccccccccc-----HHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHH
Q 011657 253 SYVGEDKEVS-----LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMT 327 (480)
Q Consensus 253 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (480)
+++++.+..+ .+-+++||..|.+.+...+.+.. -+.+..|.|.|+.+....+..++....+.+-.++++|.
T Consensus 230 ~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYiv----R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~ 305 (448)
T COG2271 230 EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVV----RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT 305 (448)
T ss_pred hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHH
Confidence 0011111123 33455666555554444444333 34777899988876544499999999999999999999
Q ss_pred HHHHHHHhhh--cCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhh
Q 011657 328 GLAVLVVERL--GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGR 405 (480)
Q Consensus 328 ~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 405 (480)
+++||++||+ |||....+.+.+.....++ . ++..++.+......++...+++..+..-+.-..+.|..|.+..|+
T Consensus 306 Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~--~-~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGt 382 (448)
T COG2271 306 LLAGWLSDKLFKGRRGPMALIFMLLITASLV--L-YWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGT 382 (448)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHH--H-HHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccc
Confidence 9999999997 5665554433332222222 2 222233344444444444455444444455567899999999999
Q ss_pred HHHHHHHHHHH-HHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 406 GLSVAVLVNFG-ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 406 ~~~~~~~~~~~-g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
+.|+...+.++ |.+.+....|++.|..||...|.++.+.++++.++.....
T Consensus 383 A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 383 ATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 8899999999999999999998888777777666554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=261.80 Aligned_cols=346 Identities=23% Similarity=0.274 Sum_probs=242.1
Q ss_pred hHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 011657 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (480)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 129 (480)
.+..+++..+..++++++....+...|.+.++ +|.++.+.+++.+.+.++..+++++.|+++||+|||+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 34455555677788899999999999999987 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhh
Q 011657 130 AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDL 175 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~ 175 (480)
+.++.+++.+++++++|++.+++.|+++|++.+. +++.++..+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999998876 233333333333
Q ss_pred hhhhHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhc
Q 011657 176 VAGWRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSY 254 (480)
Q Consensus 176 ~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (480)
.+||+.|++.++..++ ..+...++||+|++...+. ..+
T Consensus 166 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~------------------------------- 204 (406)
T PRK11551 166 -AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG---------AGK------------------------------- 204 (406)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC---------cch-------------------------------
Confidence 3899999998876665 3445556898876432111 000
Q ss_pred ccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011657 255 VGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVV 334 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 334 (480)
.++...+..++.+..+.... .....+...........+.|.+.++.|. +..+.+.......++.+++.++.|++.
T Consensus 205 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~ 279 (406)
T PRK11551 205 ---QRAPVLRALFGEGRATATLL-LWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGALM 279 (406)
T ss_pred ---hhhhhHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111111111111111 1111111122233555678888888888 888899999999999999999999999
Q ss_pred hhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHH
Q 011657 335 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN 414 (480)
Q Consensus 335 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 414 (480)
||++||+.+..+.....+++.++.. ..+.+.... ..++.+....+..+..+++..|.+|++.|+++.|+.+...
T Consensus 280 dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 353 (406)
T PRK11551 280 DRLRPRRVVLLIYAGILASLAALAA-----APSFAGMLL-AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVG 353 (406)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh-----cCcHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhh
Confidence 9999999887766555555444332 122332222 2223333333334556688899999999999999999999
Q ss_pred HHHHHhHhhcchhhHHhhCc-cHHHHHHHHHHHHHHHhcCC
Q 011657 415 FGANALVTFAFSPLKDLLGA-GILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 415 ~~g~~i~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 454 (480)
.++..++|.+.|.+.+..+. ...++..+.+.+++.+..+.
T Consensus 354 ~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 354 RLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987553 33444554455554444443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=263.98 Aligned_cols=359 Identities=15% Similarity=0.116 Sum_probs=239.1
Q ss_pred HHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011657 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (480)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 135 (480)
...+++++..++...++..+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 34555666667777788889999887 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHH
Q 011657 136 VGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRY 181 (480)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~ 181 (480)
++.+++++++|++.+++.|++.|++.|. +|+.+++.+.+.. +||+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~ 178 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRY 178 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHH
Confidence 9999999999999999999999998875 4444445554444 9999
Q ss_pred HHhchhHHHHHH-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccccc
Q 011657 182 MYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 260 (480)
Q Consensus 182 ~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (480)
.|++.++++++. ++..++++|+|++...+. ..+. + +++. +.. .+.++++
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~---~~~~--~-~~~~-----------------~~~-------~~~~~~~ 228 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPS---VGEW--R-HDAL-----------------ELA-------QQQEGAG 228 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCC---cccc--c-cccc-----------------ccc-------hhccccC
Confidence 999988877653 445556788875321000 0000 0 0000 000 0000011
Q ss_pred ccHHH-----HhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011657 261 VSLRE-----VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVV 334 (480)
Q Consensus 261 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 334 (480)
.+.++ .++++..+...+...+ .......+..|.|.+++ +.|+ +..+++...+...+++++++++.|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~l~~~~g~-s~~~a~~~~~~~~~~~~~g~~~~g~l~ 303 (434)
T PRK11663 229 LSRKEILTKYVLLNPYIWLLSFSYVL----VYVVRAAINDWGNLYMSETLGV-DLVTANSAVSMFELGGFIGALVAGWGS 303 (434)
T ss_pred CChhhhHHHHHhcChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 12222 3334433333222222 22223355567788774 5677 888899999999999999999999999
Q ss_pred hhh--cCchHH-HhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHH
Q 011657 335 ERL--GRRPLL-LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV 411 (480)
Q Consensus 335 d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 411 (480)
||+ ++|+.. ........+....+... ...+... .....+..+.+..+..........|.+|++.|+++.|+.+
T Consensus 304 dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 379 (434)
T PRK11663 304 DKLFNGNRGPMNLIFAAGILLSVGSLWLM---PFASYVM-QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVG 379 (434)
T ss_pred HHhccCCccHHHHHHHHHHHHHHHHHHHc---ccccHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHH
Confidence 998 333332 22111212222111111 1112222 2122222222222111122346689999999999999999
Q ss_pred HHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 011657 412 LVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXX 461 (480)
Q Consensus 412 ~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (480)
+..++|++++|.+.|.+.|..|+...|++.+++++++.+..+...+++++
T Consensus 380 ~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 380 LFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred HHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 99999999999999999999999999999888888877766554444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=256.76 Aligned_cols=358 Identities=18% Similarity=0.161 Sum_probs=237.5
Q ss_pred hHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 011657 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 132 (480)
.+.+++++++++.+|...++...|.+.+| +|.+..+.+++.+++.+++.+++++.|+++||+|||+++..+++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 44555677788899999999999999888 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhh----
Q 011657 133 LYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVD---- 174 (480)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~---- 174 (480)
+++++++++++++|++.+++.|+++|++.+. +|+.+++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999987 34444444432
Q ss_pred -hhhhhHHHHhchhHHHHHH-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhh
Q 011657 175 -LVAGWRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL 252 (480)
Q Consensus 175 -~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (480)
...+||+.|++.++++++. .+..+++||+|+.. +. . ..++.+...+..+..+.+.+.++ +..
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~-------~~-l--~~~~~~~~~~~~~~~~~~~~~~~------~~~ 225 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA-------KW-L--DEEDKKALKEMIDNDQLTLEQPE------GAF 225 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC-------CC-C--CHHHHHHHHHHHHhccccccccc------ccc
Confidence 1249999999998888774 44556788987410 00 0 00111111111111110000000 000
Q ss_pred hcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhc--CCCCCcchHHHHHHHHHHHHHHHHHH
Q 011657 253 SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA--GFSAASDATRVSILLGLFKLIMTGLA 330 (480)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (480)
+......+..++++++ +..+ ...+.+++.......+..|.|.++++. +. +..+++.......++.+++.++.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~-s~~~~~~~~~~~~l~~~~g~l~~ 299 (412)
T TIGR02332 226 AHAAMPQRSMLREIFT-PAIM----LYTLAYFCLTNTLSAINIWTPQILQSFNQGS-SNIMIGLLAAIPQFCTIFGMIWW 299 (412)
T ss_pred ccccccHHHHHHHhcC-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cHHHhHHHhhHHHHHHHHHHHHH
Confidence 0000000112333332 2222 222333333344556778899999875 44 66788889999999999999999
Q ss_pred HHHHhhhcCchHH-HhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHH
Q 011657 331 VLVVERLGRRPLL-LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 409 (480)
Q Consensus 331 g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 409 (480)
|+++||+++|+.. .....+..++. ++.. . .......+....+...+. ....+..+....|.+|++.|+++.|+
T Consensus 300 g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~--~--~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~ 373 (412)
T TIGR02332 300 SRHSDRLKERKHHTALPYLFAAAGW-LLAS--A--TDHNLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAV 373 (412)
T ss_pred HHHhcccCccHHHHHHHHHHHHHHH-HHHH--h--cCCHHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHH
Confidence 9999999977643 33333333332 2211 1 122222222122211111 11123334556778999999999999
Q ss_pred HHHHHHHHHHhHhhcchhhHHhhC-ccHHHHHHHHHH
Q 011657 410 AVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIA 445 (480)
Q Consensus 410 ~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~ 445 (480)
.+...++|++++|.+.|.+.|..| |...+++.+++.
T Consensus 374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 999999999999999999999875 887777766544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=260.69 Aligned_cols=357 Identities=17% Similarity=0.196 Sum_probs=243.2
Q ss_pred HHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
....++++.++++.....+.+|.+.++ +|+++.+.+++.+.+.+++.+++++.|+++||+|||+++.++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 444667778889998999999999887 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhhh---hhhhhHH
Q 011657 135 LVGALVTALAPDFIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLVD---LVAGWRY 181 (480)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~~---~~~~wr~ 181 (480)
++++++++++++++.++++|+++|++.+. +|..+++.+.. ...+||+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~ 173 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA 173 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence 99999999999999999999999999875 44444443332 2238999
Q ss_pred HHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc
Q 011657 182 MYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV 261 (480)
Q Consensus 182 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (480)
.|++..+..++........||++++...+. ...+... + ...+..+.
T Consensus 174 ~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~---------------------~~~~~~~--~-----------~~~~~~~~ 219 (426)
T PRK12307 174 AFFVGLLPVLLVIYIRARAPESKEWEEAKL---------------------SGKGKHS--Q-----------SAWSVFSL 219 (426)
T ss_pred HHHHHHHHHHHHHHHHHHCCCChHHHHhhh---------------------hcccccc--c-----------cchhhhhH
Confidence 998865544443333334566654321110 0000000 0 00001112
Q ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCch
Q 011657 262 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP 341 (480)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 341 (480)
.++++++++.++.........+. .+.....+..+.|.++++.|. +..+.+.......++.+++.++.+++.||++||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 45677777665544433222222 222222355677888888887 7788888889999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhH
Q 011657 342 LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALV 421 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~ 421 (480)
.+..+.++..+..+.+... ............+.......+..+....++.|.+|++.|+++.|+.+....+++.++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 298 TFSIGLLMSFLFIFPLFRI----PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHH
Confidence 8887776665554433221 112222221111111122222333444678899999999999999999999999999
Q ss_pred hhcchhhHHhhCccHH-HHHHHHHHHHHHHhcCCCCCC
Q 011657 422 TFAFSPLKDLLGAGIL-FYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 422 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 458 (480)
|.+.|.+.+..|+... +++.+..+.++.....+..|+
T Consensus 374 p~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (426)
T PRK12307 374 SMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPD 411 (426)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCCh
Confidence 9999999999886553 333333344444333333343
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=266.54 Aligned_cols=364 Identities=15% Similarity=0.073 Sum_probs=242.0
Q ss_pred hHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 011657 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (480)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 129 (480)
.+..+....+++++...++..+++..|.+.+| +|++..+.|++.+.+.+++.+++++.|+++||+|||+++.+
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 44455666777788888999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhhh
Q 011657 130 AALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLVD 174 (480)
Q Consensus 130 ~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~~ 174 (480)
++++++++.++.++ ++|++.+++.|+++|++.+. +|..+++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 88888877776655 68999999999999998875 55555555432
Q ss_pred ----h--hhhhHHHHhchhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHH
Q 011657 175 ----L--VAGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDE 247 (480)
Q Consensus 175 ----~--~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (480)
. ..+||..|.+.++++++..+ .+++.+++|+...... .++ . ..+.. . . ++
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~----------~~~---~---~~~~~-~---~---~~ 236 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK----------AEE---I---FGEPI-S---E---ED 236 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC----------hhh---c---ccCcc-c---h---hh
Confidence 1 12599999888888776444 4445577664210000 000 0 00000 0 0 00
Q ss_pred HHHhhhccccccccc-HHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHH
Q 011657 248 ILTELSYVGEDKEVS-LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLI 325 (480)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 325 (480)
+..+.++...... .+..++++..+...+... +..........|.|.|+++ .|. +..+++.......++.++
T Consensus 237 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~p~yl~~~~g~-s~~~a~~~~~~~~~~~~i 309 (467)
T PRK09556 237 --KETESTDMTKWQIFVEYVLKNPVIWLLCFANI----FLYIVRIGIDNWSPVYAFQELGF-SKEDAINTFTLFEIGALV 309 (467)
T ss_pred --hccccccCcHHHHHHHHHHcChHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHH
Confidence 0000000000001 122455555444333222 2222233566788887754 677 888899999999999999
Q ss_pred HHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhh
Q 011657 326 MTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGR 405 (480)
Q Consensus 326 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 405 (480)
+.++.|+++||++||+.+.....+..++..++.. . ...+.+...+..+.++ ....+..........|.+|++.+|+
T Consensus 310 g~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~p~~~~g~ 385 (467)
T PRK09556 310 GSLLWGWLSDLANGRRALVACIALALIIFTLGVY--Q-HATSEYMYLASLFALG-FLVFGPQLLIGVAAVGFVPKKAIGV 385 (467)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH--H-hcCcHHHHHHHHHHHH-HHHhhHHHHHHHHHHhhcchhhHHH
Confidence 9999999999999988766544433333222211 1 1222222222222222 2221211122245669999999999
Q ss_pred HHHHHHHHHHH-HHHhHhhcchhhHH------------hhCccHHHHHHHHHHHHHHHhcCC
Q 011657 406 GLSVAVLVNFG-ANALVTFAFSPLKD------------LLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 406 ~~~~~~~~~~~-g~~i~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
+.|+.+..+++ |++++|.+.|.+.| ..||+..|++.+++.+++.+..+.
T Consensus 386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 77999999999999 578888998888877777666554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=312.96 Aligned_cols=397 Identities=30% Similarity=0.543 Sum_probs=295.1
Q ss_pred hhhhhcccccccccccccccccCCC---CCCCcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPT---LSGISW-YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL 133 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 133 (480)
.++.+.++||...++...+...... ....++ .+.+..+.+++.+...+|..+|++++|.++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4566888999888777666555211 111110 111346789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---chHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhhh---h-h
Q 011657 134 YLVGALVTALAP---DFIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLVD---L-V 176 (480)
Q Consensus 134 ~~~~~~~~~~~~---~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~~---~-~ 176 (480)
..+++++.++++ |++.+.++|+++|++.|+ +|..++..+.. . .
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 999999999999999998 44444444331 1 1
Q ss_pred --hhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhc
Q 011657 177 --AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSY 254 (480)
Q Consensus 177 --~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (480)
..||+.+++.++++++..+..+++||||+|+..++ +.+||++.++++++.+..+... ++..++.++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~---------~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~~ 233 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG---------RDEEAEKVLRKLRGKEIEDEEI---EEIKAEKKE 233 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccc---------cccccccccccccccccccccc---ccccccccc
Confidence 25999999999999887778889999999999888 7778888888866553332221 111111111
Q ss_pred ccccccccHHHHhhhhh-hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 011657 255 VGEDKEVSLREVFHGKC-LKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLV 333 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l 333 (480)
.+ +.+..++++++++. +++......+..+..+.+.....+|.+.+++..+. +.. ........+...++.+++.++
T Consensus 234 ~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~ 309 (451)
T PF00083_consen 234 SQ-ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI-SNS--FLATLILGLVNFLGTLLAIFL 309 (451)
T ss_pred cc-ccceeeeecccccccccccccccccccccccccccccccccccccccccc-ccc--ccccccccccccccccccccc
Confidence 11 11256777777754 44555555666666666666777888888888877 333 444556667777888888899
Q ss_pred HhhhcCchHHHhhhHHHHHHHHHHH-HHhhccCCc---hhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHH
Q 011657 334 VERLGRRPLLLGGVSGIVISLFLLG-SYYLFLDDV---PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 409 (480)
Q Consensus 334 ~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 409 (480)
.||+|||++++.+..+.+++.+.++ ......... ....+....+....+..++.+..+.+..|.+|++.|+++.|+
T Consensus 310 ~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~ 389 (451)
T PF00083_consen 310 IDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGL 389 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence 9999999999988888777776664 111111111 333344444455566667778888999999999999999999
Q ss_pred HHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhhh
Q 011657 410 AVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGLR 470 (480)
Q Consensus 410 ~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (480)
...++.+++++++.+...+.+..+....+.+.++++++..++.+++.||+|+++.+|.++.
T Consensus 390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 9999999999999999999988885668888888888888888899999999999887654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=245.13 Aligned_cols=409 Identities=16% Similarity=0.187 Sum_probs=285.8
Q ss_pred CcccchhhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011657 42 PENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISW-YDLSSVEIGLITSGSLYGALIGSILAFNIADI 120 (480)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr 120 (480)
....+|+....+ .+..++.|.++||..+++.+.|.+...-+.+++. =+.++.-.+.+..+..+|.++||+++|+++||
T Consensus 32 ~~g~qw~~fk~i-~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~ 110 (538)
T KOG0252|consen 32 SEGLQWKHFKAI-IIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDK 110 (538)
T ss_pred ccchhHHHHHHH-HHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334466655544 6778999999999999999988877543322210 12467778899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHhH------------------------------
Q 011657 121 LGRRRELILAALLYLVGALVTALAPD-------FIIMVVGRFVFGIGIGL------------------------------ 163 (480)
Q Consensus 121 ~Grr~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~r~l~G~g~g~------------------------------ 163 (480)
+|||+++...++++.+++++++++.. ..++...|++.|+|.|+
T Consensus 111 ~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg 190 (538)
T KOG0252|consen 111 FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQG 190 (538)
T ss_pred hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecc
Confidence 99999999999999999998888632 47888999999999999
Q ss_pred hHHhhhhhhhh------------------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHH
Q 011657 164 GGYGIGSLLVD------------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESA 225 (480)
Q Consensus 164 ~g~~~g~~l~~------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 225 (480)
.|...|+.+.- ...=||..|.+.+++++......+.+||++++.....+ +.+.+
T Consensus 191 ~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~--------~~~~a 262 (538)
T KOG0252|consen 191 FGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSK--------KLKQA 262 (538)
T ss_pred hhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhc--------CHhhh
Confidence 44444544431 11259999999999999999999999999988633220 11111
Q ss_pred HHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc---cHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH
Q 011657 226 ISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV---SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ 302 (480)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (480)
.+..++.... ++++.... +.....++. .+...+..++ -+.++.....++..-..++....+...+++
T Consensus 263 ~~d~~k~~~~--------~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~h-g~~Llgt~~~WFllDiafy~~nL~~s~I~~ 332 (538)
T KOG0252|consen 263 AGDMKKVLSV--------DIEAESTA-ESDVPPPSNSFGLFSRLFLRWH-GKHLLGTAGTWFLLDIAFYGQNLFQSVIFS 332 (538)
T ss_pred hhcccccccc--------ccchhhcc-ccCCCCcccccchHHHHHHHHH-HHHHHHHHHHHHhhhhhhhccccHHHHHHH
Confidence 1111111111 00000000 011111111 2233333322 244555556666555566677778888888
Q ss_pred hcCCCCCcchH--------HHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHH
Q 011657 303 SAGFSAASDAT--------RVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA 374 (480)
Q Consensus 303 ~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (480)
..|..+..+.. ....+...+.++|..+...++|++|||+..+.+++++.+..+.++..+.. ..+.....+.
T Consensus 333 ~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~-~~~~~Gf~v~ 411 (538)
T KOG0252|consen 333 AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ-LENTIGFVVL 411 (538)
T ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc-ccccCceeeh
Confidence 88874333222 11223333334466667788999999999999999999888877653321 1123334444
Q ss_pred HHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH-----hhCccHHHHHHHHHHHHHH
Q 011657 375 LLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-----LLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~ 449 (480)
..+...+...+.......+.+|.+|++.|+++.|+....+..|++++...+.++.+ ..|.+.+++++++++.++.
T Consensus 412 y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi 491 (538)
T KOG0252|consen 412 YSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGI 491 (538)
T ss_pred HHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhH
Confidence 55555666666777777899999999999999999999999999999999999999 7888999999999999998
Q ss_pred HhcCCCCCCCCCChhhhhhhhh
Q 011657 450 AFIFXXXXXXXXSFQRQRGLRL 471 (480)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~ 471 (480)
++.++ .||+|++.+++.+.+.
T Consensus 492 ~~T~l-~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 492 LFTLL-IPETKGKSLEEISNEE 512 (538)
T ss_pred heeEE-eecccccCHHHhcChh
Confidence 88776 5699999988765443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=253.41 Aligned_cols=329 Identities=17% Similarity=0.200 Sum_probs=233.5
Q ss_pred hhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011657 59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA 138 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 138 (480)
++.+....+.....+.+|.+.+| +|.+..+.+++.+.+.+++.++++++|+++||+|||+++..+.+++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 88 (390)
T PRK03545 16 LAAFIFNTTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH 88 (390)
T ss_pred HHHHHHHhHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 33344434444556678888888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHh
Q 011657 139 LVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYG 184 (480)
Q Consensus 139 ~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~ 184 (480)
+++++++|++.++++|+++|++.+. +|+.+++.+.+.. +||+.|+
T Consensus 89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~ 167 (390)
T PRK03545 89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFL 167 (390)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHH
Confidence 9999999999999999999998765 5555566555554 9999999
Q ss_pred chhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccH
Q 011657 185 ASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 263 (480)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (480)
+.++++++..+ ....+||.|+ + ++....+.
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~-----~--------------------------------------------~~~~~~~~ 198 (390)
T PRK03545 168 AIGGGALITLLLLIKLLPLLPS-----E--------------------------------------------HSGSLKSL 198 (390)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-----C--------------------------------------------CcchHHHH
Confidence 99988776443 3444565431 0 00001123
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 264 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
++.++++..+.......+..... .....+.+.++++ .|. +..+.+.......++.+++.++.+++.||+++|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~g~-s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~ 273 (390)
T PRK03545 199 PLLFRRPALVSLYLLTVVVVTAH----FTAYSYIEPFVQQVAGL-SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL 273 (390)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence 45666665554433322222221 1223344444444 576 78889999999999999999999999999998765
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
. .+..+..++...+... ..+.+.......+. +.......+.....+.+..| +.++++.|+.+...++|..+||
T Consensus 274 ~-~~~~~~~~~~~~l~~~----~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~ 346 (390)
T PRK03545 274 L-IAIALLLVCLLLLLPA----ANSEWHLSVLSIFW-GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGA 346 (390)
T ss_pred H-HHHHHHHHHHHHHHHH----hchHHHHHHHHHHH-HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 4 3433333333322211 12233333333333 33333333444466777777 6789999999999999999999
Q ss_pred hcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 423 FAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
.+.|.+.|+.|++..+++.+++.+++.+..+...
T Consensus 347 ~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 347 LLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999888888777765544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=252.32 Aligned_cols=345 Identities=15% Similarity=0.135 Sum_probs=241.1
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 130 (480)
|.+...++++.+..... ...++.+|.+++| +|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~ 80 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAIS 80 (393)
T ss_pred HHHHHHHHHHHHcchhh-hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHH
Confidence 33434444444433333 5678999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----------------------------hHHhhhhh----hhhhhh
Q 011657 131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL-----------------------------GGYGIGSL----LVDLVA 177 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~-----------------------------~g~~~g~~----l~~~~~ 177 (480)
..+++++.+++++++|++.++++|+++|++.+. .|..+|+. +.+...
T Consensus 81 ~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~ 160 (393)
T PRK09705 81 LLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSE 160 (393)
T ss_pred HHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999997 23344433 334434
Q ss_pred hhHHHHhchhHHHHHHHHHHhccc-CchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccc
Q 011657 178 GWRYMYGASTPLAVIMGMGMWWLP-ASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 256 (480)
Q Consensus 178 ~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (480)
+||+.+.+.++..++..+..+... +.|+ + + +
T Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----------~--------------------------------~ 192 (393)
T PRK09705 161 TWYQTLAWWALPAVVALFAWWWQSAREVA-----S-----------S--------------------------------H 192 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----c-----------c--------------------------------c
Confidence 899988776666554333332221 1110 0 0 0
Q ss_pred ccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011657 257 EDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER 336 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 336 (480)
++ +...++.++++..+...+... .....+.....+.|.++++.|. +..+++.......++.++++++.+++.||
T Consensus 193 ~~-~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r 266 (393)
T PRK09705 193 KT-TTTPVRVVFTPRAWTLGVYFG----LINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAMARH 266 (393)
T ss_pred CC-CcCCcccccCHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 001122333343333222221 1222334566778888888888 88899999999999999999999999999
Q ss_pred hcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccC-ChhhhhhHHHHHHHHHH
Q 011657 337 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF-PLRLRGRGLSVAVLVNF 415 (480)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 415 (480)
++||+.+..+..+..++..++... +.+.... . ..+.+.+.+ ...+.......+.. |++.+++..|+.+.+.+
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~-~-~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 339 (393)
T PRK09705 267 QDRRKLLMLALVLQLVGFCGFIWL----PLQLPVL-W-AMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGF 339 (393)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHc----cchHHHH-H-HHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 999998888777666665544321 1112111 1 122222222 22344444555665 46789999999999999
Q ss_pred HHHHhHhhcchhhHHhhC-ccHHHHHHHHHHHHHHHhcCCCCCCCCCChh
Q 011657 416 GANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXXXXXXXXSFQ 464 (480)
Q Consensus 416 ~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (480)
+++.++|.+.|++.|..| +...|.+.++++++..++.+.+.+|++++..
T Consensus 340 ~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 340 IIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999999999987 5667777777777777777777888776543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=252.24 Aligned_cols=345 Identities=17% Similarity=0.209 Sum_probs=221.2
Q ss_pred hHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 011657 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIG---LITSGSLYGALIGSILAFNIADILGRRRELIL 129 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 129 (480)
.+....++.+++.+|...++...|.+.++.... +.+..+.+ .+.+..+++..++++++|+++||+|||+++..
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPS----GNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 334556788899999999999999988771110 34455443 34455556666999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHHhH------------------------------hHHhhhhh
Q 011657 130 AALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGL------------------------------GGYGIGSL 171 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~------------------------------~g~~~g~~ 171 (480)
++++++++++++++++++. .++++|+++|++.|+ .|..++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 588999999999886 23333332
Q ss_pred h----hh-------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCC
Q 011657 172 L----VD-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS 240 (480)
Q Consensus 172 l----~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (480)
+ .. ...|||++|++.++++++.......+||+|++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------------------------------- 227 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR------------------------------- 227 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-------------------------------
Confidence 2 11 13499999999888887765556667887642100
Q ss_pred ChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHH
Q 011657 241 APTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILL 319 (480)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 319 (480)
+.++..+++++++++..+...+.. .+.....++.+..|.|.++++ .|. +..+.+......
T Consensus 228 ---------------~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~lp~~l~~~~g~-s~~~~~~~~~i~ 288 (432)
T PRK10406 228 ---------------ALKEAGSLKGLWRNRRAFIMVLGF---TAAGSLCFYTFTTYMQKYLVNTAGM-HANVASGIMTAA 288 (432)
T ss_pred ---------------hhcccccHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 000112466777655443322221 111122233456677877754 577 777788888888
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCC
Q 011657 320 GLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP 399 (480)
Q Consensus 320 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 399 (480)
.++..++.++.|+++||++||+.+..+..+..+....+.... ....+....+....+...... ...+..+.+..|.+|
T Consensus 289 ~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp 366 (432)
T PRK10406 289 LFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-QNVSSPYAAFGLVMCALLIVS-FYTSISGILKAEMFP 366 (432)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC
Confidence 888888899999999999999887665554333322111111 111222222221211111111 122344577899999
Q ss_pred hhhhhhHHHHHHHHHHH-HHHhHhhcchhhHHhhC-ccHHHHHHHHHHHHHHHhcCC
Q 011657 400 LRLRGRGLSVAVLVNFG-ANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 400 ~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 454 (480)
++.|+++.|+.+.+.++ .+...|.+.+. .+..| +...+++.+++.+++.+..++
T Consensus 367 ~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 367 AQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred CCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988664 34457777774 45556 444555555666666555444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=248.99 Aligned_cols=349 Identities=19% Similarity=0.218 Sum_probs=232.9
Q ss_pred HHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 011657 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL 133 (480)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 133 (480)
+....++++.++++....+++.|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3455778889999999999999999888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhh-hh
Q 011657 134 YLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLV-AG 178 (480)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~-~~ 178 (480)
.++++++++++++++.+++.|+++|++.+. +|+.+++.+.+.. .+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999998876 3333333333333 14
Q ss_pred hHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccc
Q 011657 179 WRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 258 (480)
Q Consensus 179 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (480)
||+.|++.+++.++..+....+||++++..+++ +.++..+..++..+.+.. .+.. .++
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~~~~-------~~~ 224 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHA---------GKALVRTMVDILYGGEHR------IANI-------VMT 224 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhh---------hhhhhhhHHHHHhccchh------hhhh-------hhh
Confidence 999999877766666666667888876432221 001111111111110000 0000 000
Q ss_pred ccccHHHHhhhhhhhHHHH-HHHHHHHHHhhChhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011657 259 KEVSLREVFHGKCLKALII-GAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER 336 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 336 (480)
.....++.. +..+..+. ......+.... ......+.|.++ ++.|. +..+.+.......++.+++.++.+++.||
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 300 (405)
T TIGR00891 225 LAAAMVQSA--GKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGL-SPHTVANIVVFSNIGAIVGGCVFGFLGDW 300 (405)
T ss_pred hhHHhhhhh--hhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111 11111111 11111111111 123334455555 45677 88889999999999999999999999999
Q ss_pred hcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHH
Q 011657 337 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG 416 (480)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 416 (480)
++||+.+..+..+..+....+.. . ..+.+.......+. +....+..+....++.|.+|++.|+++.|+.+.+.++
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 301 LGRRKAYVCSLLAGQLLIIPVFA--I--GANVAVLGLGLFFQ-QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL 375 (405)
T ss_pred hCchhhhHHHHHHHHHHHHHHHH--h--CCchHHHHHHHHHH-HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH
Confidence 99999887776654333222211 1 22222222222222 2333333445557889999999999999999999999
Q ss_pred HHHhHhhcchhhHHhhC-ccHHHHH
Q 011657 417 ANALVTFAFSPLKDLLG-AGILFYA 440 (480)
Q Consensus 417 g~~i~~~~~~~~~~~~g-~~~~~~~ 440 (480)
++.++|.+.|.+.|+.| |...+..
T Consensus 376 g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 376 GGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHhccccchhHHh
Confidence 99999999999999988 6654443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=254.17 Aligned_cols=369 Identities=16% Similarity=0.159 Sum_probs=236.2
Q ss_pred hHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 011657 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 132 (480)
.+..+.++.++++++....++.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 33445667778888988999999999887 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhh
Q 011657 133 LYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAG 178 (480)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~ 178 (480)
+.+++.+++++++|++.+++.|++.|++.+. +|+.+++.+.+.. +
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~ 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-G 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C
Confidence 9999999999999999999999999998775 3444444444444 9
Q ss_pred hHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHH--HHhhhccc
Q 011657 179 WRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEI--LTELSYVG 256 (480)
Q Consensus 179 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 256 (480)
||+.|++.++..++..+....+||++++...++.+.+. .+..+.....+.. ......... ......-.
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 242 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPV---------RTMVDILYRGEHR-IINILLTLAAAAALWFCFA 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccc---------hhHHHHHhcchhH-HHHHHHHHHHHHHHHHHHH
Confidence 99999876555544444555678876543221100000 0000000000000 000000000 00000000
Q ss_pred ccccccHH-------------HH-h-hhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHH
Q 011657 257 EDKEVSLR-------------EV-F-HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLG 320 (480)
Q Consensus 257 ~~~~~~~~-------------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 320 (480)
......+. .. . .....++.........+..+........+.|.+++ +.|. +..+.+...+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~-~~~~~g~~~~~~~ 321 (496)
T PRK03893 243 GNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGY-DPHTVANVLFFSG 321 (496)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCC-CHHHHHHHHHHHH
Confidence 00000000 00 0 00011111111112222222222234567788885 6777 8889999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCCh
Q 011657 321 LFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL 400 (480)
Q Consensus 321 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 400 (480)
++.+++.++.|++.||++||+.+..+..+..+..+.+... .....+......+...+...+..+....++.|.+|+
T Consensus 322 ~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (496)
T PRK03893 322 FGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT 397 (496)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH
Confidence 9999999999999999999998877665555444332211 122222222222222223333334555788899999
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHH
Q 011657 401 RLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 444 (480)
Q Consensus 401 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 444 (480)
+.|++++|+.+....+|+.++|.+.|.+.+..|+...+...+++
T Consensus 398 ~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 398 EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 99999999999999999999999999999999988776555443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-30 Score=250.91 Aligned_cols=359 Identities=14% Similarity=0.102 Sum_probs=249.6
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 130 (480)
+..+..++++.++...|.++++.++|.+.+| +|.+..+.+|+.+.|.+++.++++++|+++||+|||++++++
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~ 77 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG 77 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4456777888899999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----------------------------------hHHhhhhhhhhh
Q 011657 131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL-----------------------------------GGYGIGSLLVDL 175 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~-----------------------------------~g~~~g~~l~~~ 175 (480)
.+++.++++++++++|++.++++|+++|+|.+. +||.+++.+.+.
T Consensus 78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999886 677777777776
Q ss_pred hhhhHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHH---HHHHhC-CCCCCCChhhHHH---
Q 011657 176 VAGWRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISC---LCRLRG-QSIGDSAPTEVDE--- 247 (480)
Q Consensus 176 ~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~--- 247 (480)
. +|||.|++...++++ ..+..+++||+|+ +++++.|..+........ ...... ....+........
T Consensus 158 ~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~~-----~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 231 (495)
T PRK14995 158 F-YWGSVFLINVPIVLVVMGLTARYVPRQAG-----RRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT 231 (495)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 5 999999998887776 4445556777642 111112222211111110 001111 1111111000000
Q ss_pred ------HHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHH
Q 011657 248 ------ILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLG 320 (480)
Q Consensus 248 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 320 (480)
.....+. +.+.+.-..++++++.+....+..+.... ......++.|.+++. .|. ++.+++....+..
T Consensus 232 ~~~~l~~f~~~e~-~~~~p~~~~~lf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lq~v~g~-s~~~ag~~~~~~~ 305 (495)
T PRK14995 232 GALLLGLFIRTQL-AASRPMIDMRLFTHRIILSGVVMAMTAMI----TLVGFELLMAQELQFVHGL-SPLEAGMFMLPVM 305 (495)
T ss_pred HHHHHHHHHHHHh-cCCCCCcCHHHhCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 0000011 11122222467776655443333222222 223455677777776 466 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCCh
Q 011657 321 LFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL 400 (480)
Q Consensus 321 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 400 (480)
++..++.++.|++.||+|+|+.+..+..+.+++.+++... ....+.+.......+.+.+.+... +.....+.+..|+
T Consensus 306 ~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~ 382 (495)
T PRK14995 306 VASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT--DFSTQQWQAWGLMALLGFSAASAL-LASTSAIMAAAPP 382 (495)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCH
Confidence 9999999999999999999998888887777766655432 112223333333333333333333 3344677788999
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 401 RLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 401 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
++++.+.++.++.+++|+.+|+.+.|.+.++
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=249.63 Aligned_cols=357 Identities=15% Similarity=0.085 Sum_probs=224.2
Q ss_pred HhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011657 57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV 136 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 136 (480)
.++.......+...++..+|.+.+ .|++..+.+++.+.+.+++.++++++|+++||+|||++++++.++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~p~l~~--------~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 34 IFFGYAAYYLVRKNFALAMPYLVE--------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 334445555555556677777663 378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC----chHHHHHHHHHHHHHHhH------------------------------hHHh-hhhhh---hhhhhh
Q 011657 137 GALVTALAP----DFIIMVVGRFVFGIGIGL------------------------------GGYG-IGSLL---VDLVAG 178 (480)
Q Consensus 137 ~~~~~~~~~----~~~~l~~~r~l~G~g~g~------------------------------~g~~-~g~~l---~~~~~~ 178 (480)
+.+++++++ +++.+++.|++.|++.+. +|.. .+.++ .....+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g 185 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND 185 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 999888763 788899999999998876 2211 11111 112239
Q ss_pred hHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccc
Q 011657 179 WRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE 257 (480)
Q Consensus 179 wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (480)
||+.|++.+++.++ ..+..+++||+|+....+. .++..+ .... + .++.+.++.
T Consensus 186 w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~-------~~~~-----~----~~~~~~~~~ 239 (452)
T PRK11273 186 WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP----------IEEYKN-------DYPD-----D----YNEKHEQEL 239 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC----------hhhhhh-------cccc-----c----cccccCCCc
Confidence 99999998888776 4556667788875311000 000000 0000 0 000000000
Q ss_pred cccccH-HHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 011657 258 DKEVSL-REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVE 335 (480)
Q Consensus 258 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 335 (480)
+.+..+ +.+++++..+...+...+... .......|.|.++++ .|+ +..+++.......++.+++.++.|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~-s~~~~~~~~~~~~~~~~~g~~~~G~l~d 314 (452)
T PRK11273 240 TAKQIFMQYVLPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTLLCGWMSD 314 (452)
T ss_pred cHHHHHHHHHHcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 124455544444333333222 223556688888876 466 7778888888899999999999999999
Q ss_pred hh--cCchHHH-hhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHH
Q 011657 336 RL--GRRPLLL-GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVL 412 (480)
Q Consensus 336 ~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 412 (480)
|+ +||.... ....+..++..++.. ....+.+........++.. ..+.......+..|.+|++.||++.|+.+.
T Consensus 315 r~~~~r~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 390 (452)
T PRK11273 315 KVFRGNRGATGVFFMTLVTIATIVYWL---NPAGNPTVDMACMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGL 390 (452)
T ss_pred HHccCCcchHHHHHHHHHHHHHHHHHH---hcccChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHcChhhhhhHHHHHHH
Confidence 99 4444322 222222222222211 1111222222222222221 111112222456799999999999999999
Q ss_pred HHHHHHHh-HhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 413 VNFGANAL-VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 413 ~~~~g~~i-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
..++|+.+ +|.+.|.+.|+.|++..|++.+++++++.+....+.
T Consensus 391 ~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 391 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 98888765 799999999999999999988887777766655433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-31 Score=247.74 Aligned_cols=324 Identities=13% Similarity=0.055 Sum_probs=230.8
Q ss_pred ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCch
Q 011657 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF 147 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 147 (480)
....++..|.+.++ +|++..+.+++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++++++|+
T Consensus 19 ~~~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~ 91 (377)
T TIGR00890 19 VYTWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL 91 (377)
T ss_pred HhhhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence 33567788999888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhH-----------------------------hHHhhhhhhhh---hhhhhHHHHhchhHHHHHHHH
Q 011657 148 IIMVVGRFVFGIGIGL-----------------------------GGYGIGSLLVD---LVAGWRYMYGASTPLAVIMGM 195 (480)
Q Consensus 148 ~~l~~~r~l~G~g~g~-----------------------------~g~~~g~~l~~---~~~~wr~~f~~~~~~~~~~~~ 195 (480)
+.++++|+++|++.+. +|..+++.+.. ...+||+.|++.++++++..+
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 92 AALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 22222222211 123899999999988877544
Q ss_pred H-HhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhH
Q 011657 196 G-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA 274 (480)
Q Consensus 196 ~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (480)
. .++++|+|+... ++ +. +.+.++...++.++++..+.
T Consensus 172 ~~~~~~~~~~~~~~-~~------------------------~~-----------------~~~~~~~~~~~~~~~~~~~~ 209 (377)
T TIGR00890 172 LGAFLIGYPPGQLI-KT------------------------NI-----------------EVSVKDYTVWEMLRTPQFWV 209 (377)
T ss_pred HHHHheecCchhcc-cc------------------------Cc-----------------ccchhhhhHHHHHcCccHHH
Confidence 4 444554432000 00 00 00001123445566655544
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHH
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 354 (480)
..+......+. ......+.+.+.++.+. +..+.+.......++.++++++.+++.||++||+.+..+..+..++.
T Consensus 210 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 210 LYLSFFLNAVS----GLLLIGLYKPYGQSLGL-SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHhHH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 43332222221 12233344556677777 77788889999999999999999999999999999888877777766
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCc
Q 011657 355 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGA 434 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~ 434 (480)
+++... .............+..... ....+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..|+
T Consensus 285 ~~~~~~---~~~~~~~~~~~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 360 (377)
T TIGR00890 285 AAMLFI---PMLNDVLFLATVALVFFTW-GGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF 360 (377)
T ss_pred HHHHHc---ccchhHHHHHHHHHHHHHh-ccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 654431 1111112212222222222 223344456888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 011657 435 GILFYAFGVIAVLSL 449 (480)
Q Consensus 435 ~~~~~~~~~~~~~~~ 449 (480)
+..|.+.+++.+++.
T Consensus 361 ~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 361 EYTFIVTGAFALTSL 375 (377)
T ss_pred hhHHHHHHHHHHHhc
Confidence 999888887776654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=243.28 Aligned_cols=349 Identities=17% Similarity=0.155 Sum_probs=221.7
Q ss_pred HHHHhhhhhcccccccccccccccc-cCCCCCCCccccCChhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 011657 54 FLFPALGGLLYGYDIGSTSCATISI-ESPTLSGISWYDLSSVEIGLIT-----SGSLYGALIGSILAFNIADILGRRREL 127 (480)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~ 127 (480)
+....++.+++++|...++.+.|.+ .++... +.++. .+++. ++.+++..+++++.|+++||+|||+++
T Consensus 24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 24 ALGSFAGAVVDWYDFLLYGITAALVFNREFFP-----QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 3445678889999999888877643 333110 34444 34443 455677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHHhH------------------------------hHHhhh
Q 011657 128 ILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGL------------------------------GGYGIG 169 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~------------------------------~g~~~g 169 (480)
.++.++++++++++++++|+. .++++|+++|++.|+ +|..++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 588899999999987 444444
Q ss_pred hhhhh-----------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCC
Q 011657 170 SLLVD-----------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG 238 (480)
Q Consensus 170 ~~l~~-----------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (480)
..+.. ...+||++|++.+++.++........||+|+|...+++. +
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~---------~--------------- 233 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ---------A--------------- 233 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc---------c---------------
Confidence 32221 124999999998887766555556688988754322100 0
Q ss_pred CCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHH
Q 011657 239 DSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSI 317 (480)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 317 (480)
+.+++....+.++++++.+.... .... ......+....|.|.+.+ ..|. +.........
T Consensus 234 ----------------~~~~~~~~~~~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~y~~~~~g~-s~~~~~~~~~ 293 (438)
T PRK09952 234 ----------------AAKKRIPVIEALLRHPGAFLKII--ALRL-CELLTMYIVTAFALNYSTQNLGL-PRELFLNIGL 293 (438)
T ss_pred ----------------cccccCCHHHHHHHchHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 00000011122344433322221 1111 122223344556666654 4566 5554445555
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeeccc
Q 011657 318 LLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV 397 (480)
Q Consensus 318 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..++..+++.++.|+++||+|||+.+..+.++..++...+.... ...+....+....+..+.......+..+++..|.
T Consensus 294 ~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~ 371 (438)
T PRK09952 294 LVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEM 371 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888899999999999999988877665544433222211 1122222222222222222222234456888999
Q ss_pred CChhhhhhHHHHHHHHH-HHHHHhHhhcchhhHHhh--CccHHHHHHHHHHHHHHHhcCC
Q 011657 398 FPLRLRGRGLSVAVLVN-FGANALVTFAFSPLKDLL--GAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 398 ~p~~~~~~~~~~~~~~~-~~g~~i~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
+|++.|+++.++.+... .+++.++|.+.+.+.+.. +|...+...+++.+++.+..+.
T Consensus 372 ~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 372 FGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred CCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977664 489999999999998854 3566677667777776666544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=242.17 Aligned_cols=316 Identities=14% Similarity=0.074 Sum_probs=212.6
Q ss_pred ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHH
Q 011657 70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII 149 (480)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (480)
.+++.+|.+.+| +|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|++.
T Consensus 9 ~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 9 TFSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred HHHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 567888999888 9999999999999999999999999999999999999877666555555443344489999
Q ss_pred HHHHHHHHHHHHhH---------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHH-HHH
Q 011657 150 MVVGRFVFGIGIGL---------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVI-MGM 195 (480)
Q Consensus 150 l~~~r~l~G~g~g~---------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~-~~~ 195 (480)
++++|+++|++.+. +++.+++.+.+.. +||+.|++.++++++ ..+
T Consensus 82 l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHH
Confidence 99999999999875 4555555555544 999999998888776 455
Q ss_pred HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 196 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 196 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
.++++||+|++..+ . .+ .++ ....++++++++..+..
T Consensus 161 ~~~~lp~~p~~~~~--------------------------~----~~--~~~-----------~~~~~~~ll~~~~~~~~ 197 (368)
T TIGR00903 161 VLAALPALPFQAAE--------------------------G----FG--FKD-----------AVKEFGALAGRKDLWII 197 (368)
T ss_pred HHHHcCCCCCCCCC--------------------------C----cc--hHH-----------HHHHHHHHHcChhHHHH
Confidence 56678998752100 0 00 000 00135677777766555
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc---hHHHh-hhHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR---PLLLG-GVSGIV 351 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~ 351 (480)
.+..++. ...+..+..|.|.++++.|+ +.. .+.......+.+.++ .++++||..|| +.... ...+.+
T Consensus 198 ~~~~~~~----~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a 268 (368)
T TIGR00903 198 GAILGFG----VALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIA 268 (368)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence 4433333 33344667899999988887 543 555555555555544 57788887653 33222 222223
Q ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 352 ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
+.+..+.. ..+....+....+ .+++.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..
T Consensus 269 ~~~~~~~~-----~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~- 341 (368)
T TIGR00903 269 AFFLALAF-----ELNRLALFAFIGI-AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS- 341 (368)
T ss_pred HHHHHHHH-----ccccHHHHHHHHH-HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-
Confidence 22222221 1222222222222 2222333334556889999999999999999999999999999999987774
Q ss_pred hCccHHHHHHHHHHHHHHHhcC
Q 011657 432 LGAGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 432 ~g~~~~~~~~~~~~~~~~~~~~ 453 (480)
|....|.++++..+++.+..+
T Consensus 342 -~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 342 -SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred -CHHHHHHHHHHHHHHHHHHHH
Confidence 666778888887777777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-30 Score=245.10 Aligned_cols=325 Identities=18% Similarity=0.241 Sum_probs=209.8
Q ss_pred hHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHH-HHH-----HHHHHHHHHHHHHHHhhhhhhHH
Q 011657 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLIT-SGS-----LYGALIGSILAFNIADILGRRRE 126 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~-----~~~~~~~~~~~g~l~dr~Grr~~ 126 (480)
+.....++.+++.+|...++...|.+.+| ++.++.+.+.+. +.. .++..+++++.|+++||+|||++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~ 88 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG 88 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence 35566788999999999999999999988 887777655433 322 23335789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHHhH----------------------------------h
Q 011657 127 LILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGL----------------------------------G 164 (480)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~----------------------------------~ 164 (480)
++.+.+++++++++++++++++ .++++|+++|++.+. +
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 468899999998775 2
Q ss_pred HHhhhhhhhh-------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCC
Q 011657 165 GYGIGSLLVD-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237 (480)
Q Consensus 165 g~~~g~~l~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (480)
|+.+|+.+.. ...+||++|++..+...+........||++++..+++
T Consensus 169 g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-------------------------- 222 (434)
T PRK15075 169 AALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-------------------------- 222 (434)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh--------------------------
Confidence 4444444421 2349999999765443322222223444432110000
Q ss_pred CCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHH
Q 011657 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVS 316 (480)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 316 (480)
+.+.+..+++..+++ +..+...+..+.....+.....|.|.++++ .|+ +..+.++..
T Consensus 223 ------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-~~~~~~~~~ 280 (434)
T PRK15075 223 ------------------RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHL-SAADSLLVT 280 (434)
T ss_pred ------------------ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 000011122222222 222221222222233345677788888876 577 777888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHH-HHHHHHHHhcccccccceeec
Q 011657 317 ILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA-LLLYVGCYQLSFGPIGWLMIS 395 (480)
Q Consensus 317 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 395 (480)
....++.+++.++.|+++||+|||+.+..+..+..+....... ... .......... ..+...+.+ ...+..+.+..
T Consensus 281 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 357 (434)
T PRK15075 281 LCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS-WLV-AAPSFARMLAVELWLSFLYG-SYNGAMVVALT 357 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHH-cCCchHHHHHHHHHHHHHHH-HHHhhHHHHHH
Confidence 8899999999999999999999999877654443322111111 111 1122211211 122222222 22334446789
Q ss_pred ccCChhhhhhHHHHHHHHHHH-HHHhHhhcchhhHHhhCcc
Q 011657 396 EVFPLRLRGRGLSVAVLVNFG-ANALVTFAFSPLKDLLGAG 435 (480)
Q Consensus 396 ~~~p~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~g~~ 435 (480)
|.+|++.|+++.++.+.+... ++.++|.+.|.+.|..|+.
T Consensus 358 e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 358 EVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 999999999999997666554 5888999999999998864
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=240.43 Aligned_cols=332 Identities=14% Similarity=0.177 Sum_probs=226.1
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
.++.+..+.......+.+|.+.+| +|.+..+.+++.+.+.+++.++++++|+++||+|||+++.++.++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG 81 (382)
T ss_pred HHHHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 445566677777888899999988 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHH
Q 011657 138 ALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMY 183 (480)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f 183 (480)
.+++++++|++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|
T Consensus 82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~f 160 (382)
T PRK10091 82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYTF 160 (382)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHHH
Confidence 99999999999999999999998775 3455555555544 899999
Q ss_pred hchhHHHHHHH-HHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccccccc
Q 011657 184 GASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVS 262 (480)
Q Consensus 184 ~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (480)
++.+++.++.. ...+++||.++ +. +.+.+ .
T Consensus 161 ~~~~~~~~~~~~~~~~~lp~~~~----~~--------------------------------------------~~~~~-~ 191 (382)
T PRK10091 161 LLIAVFNIAVLASIYFWVPDIRD----EA--------------------------------------------KGGLR-E 191 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc----cc--------------------------------------------ccCHH-H
Confidence 99988877643 34455777531 00 00000 0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 263 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
..+.++++..+.......+.. ...+....+..|++.+..|. ++.+.++......++.+++.++.+++.||+++|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~ 267 (382)
T PRK10091 192 QFHFLRSPAPWLIFAATMFGN---AGVFAWFSYIKPYMMFISGF-SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI 267 (382)
T ss_pred HHHHhcChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH
Confidence 112233333332222211111 11111222233444445677 88899999999999999999999999999999998
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
+..+..+..++.+++... .+..+.......+...+......+.......+..|.+.++.+ ..+....+|.+++|
T Consensus 268 ~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp 341 (382)
T PRK10091 268 AAVTDFIIVLALLMLFFF----GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGA 341 (382)
T ss_pred HHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHH
Confidence 888777766666544321 122233233222332222222222222344444555555544 44677899999999
Q ss_pred hcchhhHHh-hCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 423 FAFSPLKDL-LGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 423 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
.+.|.+.|. .+|+..+.+.++++++.........
T Consensus 342 ~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 342 YCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999999995 6788888887766665555544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=244.97 Aligned_cols=335 Identities=16% Similarity=0.109 Sum_probs=212.0
Q ss_pred ccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 011657 64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143 (480)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 143 (480)
..++.....+.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++
T Consensus 48 ~~~~~~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 120 (476)
T PLN00028 48 CFVSTFAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL 120 (476)
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 333444567788888887 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHhH-----------------------------hHHhhhhhhh----h----h----hhhhHHH
Q 011657 144 APDFIIMVVGRFVFGIGIGL-----------------------------GGYGIGSLLV----D----L----VAGWRYM 182 (480)
Q Consensus 144 ~~~~~~l~~~r~l~G~g~g~-----------------------------~g~~~g~~l~----~----~----~~~wr~~ 182 (480)
+++++.+++.|+++|++.+. +|..++..+. . . ..+||+.
T Consensus 121 ~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~ 200 (476)
T PLN00028 121 VSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA 200 (476)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 99999999999999998875 2222222211 1 1 1389999
Q ss_pred HhchhHHHHHHHHHHhcccC-chHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc
Q 011657 183 YGASTPLAVIMGMGMWWLPA-SPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV 261 (480)
Q Consensus 183 f~~~~~~~~~~~~~~~~~~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (480)
|++.++++++..+..+++++ .|+. ..++.. ++.+.++.+...
T Consensus 201 f~i~g~l~l~~~l~~~~~~~~~p~~--------------~~~~~~-----------------------~~~~~~~~~~~~ 243 (476)
T PLN00028 201 FFVPGLLHIIMGILVLTLGQDLPDG--------------NYRELK-----------------------KSGTMPKDSFSK 243 (476)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCCC--------------chhhHH-----------------------hcCccccccHHH
Confidence 99999988875555555443 3310 000000 000000000111
Q ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 011657 262 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR 340 (480)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 340 (480)
.+++.++++..+...+..... ......+..+.|.++. +.|+ +..+++.......++.++++++.|+++||++||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~-s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 244 VLRYGVTNYRTWILALTYGYS----FGVELTMDNIIAEYFYDRFGL-SLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHcCchhHHHHHHHHHH----HHHHHHHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 234445555444333322221 1112234455666654 4577 888899999999999999999999999999865
Q ss_pred h-------HHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHH
Q 011657 341 P-------LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV 413 (480)
Q Consensus 341 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 413 (480)
+ .......+.++.++++. ...+........+++..+.... .+..+.+..+..| +.+|++.|+.+..
T Consensus 319 ~~~~~r~~~~~~~~~l~~i~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~ 391 (476)
T PLN00028 319 FGMRGRLWALWIVQTLGGVFCIWLG-----RANSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAG 391 (476)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhcc
Confidence 2 11122221111111111 1222222222222332222222 2234456666655 7899999999888
Q ss_pred HHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCC
Q 011657 414 NFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 414 ~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
+++|+++++.+.+ ..+..+|...|++.+++.+++.++.++.
T Consensus 392 g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 392 GNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred ccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 8888888777654 1123457788888887777777665544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=243.02 Aligned_cols=354 Identities=18% Similarity=0.197 Sum_probs=238.0
Q ss_pred hcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 011657 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 141 (480)
+...+|...++...|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 76 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence 34445667788888888877 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchh
Q 011657 142 ALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGAST 187 (480)
Q Consensus 142 ~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~ 187 (480)
++++|++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.+
T Consensus 77 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~ 155 (399)
T TIGR00893 77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEG 155 (399)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 9999999999999999999886 4444444444444 8999999998
Q ss_pred HHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHH
Q 011657 188 PLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266 (480)
Q Consensus 188 ~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (480)
++.++..+ ..++.||+|+.. +.. .+++.....+....+. +.+.+++......++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 211 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPPQKA-------KWL---TEEEKYIVVGGLLAEQ--------------QGKGPSTPKKYQIKEL 211 (399)
T ss_pred HHHHHHHHHhhheecCCCCcc-------ccC---CHHHHhhcchhhcccc--------------ccccccCCCccchHHH
Confidence 88777444 444566654210 000 0000000000000000 0001112233445667
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHH-
Q 011657 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL- 344 (480)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~- 344 (480)
++++..+...+...+.. ........+.|.++++ .+. +..+.+.......++.+++.++.+++.||++||+...
T Consensus 212 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 286 (399)
T TIGR00893 212 LKDRRVWGLALGQFLVN----IGLGFFLTWFPTYLVQERGL-SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286 (399)
T ss_pred hcCHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHhcc-cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 77665544433333222 2334556667777655 566 7788899999999999999999999999999886211
Q ss_pred hhhHHHHHHHHHHHHH-hhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhh
Q 011657 345 GGVSGIVISLFLLGSY-YLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 423 (480)
Q Consensus 345 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~ 423 (480)
.......++.+..... .................... ...+..+..+++..|.+|++.|+++.|+.+.+.++|+.++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 365 (399)
T TIGR00893 287 FARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF-FGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-hchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence 1111111111111110 11111112222222222222 222356677789999999999999999999999999999999
Q ss_pred cchhhHHhhC-ccHHHHHHHHHHHHHHHhcC
Q 011657 424 AFSPLKDLLG-AGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 424 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 453 (480)
+.|.+.+..| +...+++.+++.+++.+..+
T Consensus 366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 366 VIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999988 88888888877777665543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=239.22 Aligned_cols=323 Identities=20% Similarity=0.196 Sum_probs=221.9
Q ss_pred hhhccccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011657 60 GGLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA 138 (480)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 138 (480)
..++...+..+..+.+|. +.++ +|.+..+.|++.+++.+++.+++++.|+++||+|||++++.+.++++++.
T Consensus 23 ~~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (399)
T PRK05122 23 FTFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSG 95 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHH
Confidence 334555566677777886 4555 89999999999999999999999999999999999999999999998887
Q ss_pred HHHHhc---C-----chHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhh
Q 011657 139 LVTALA---P-----DFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLV 176 (480)
Q Consensus 139 ~~~~~~---~-----~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~ 176 (480)
+.+.++ + +++.+++.|+++|++.+. +|+.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 175 (399)
T PRK05122 96 LLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG 175 (399)
T ss_pred HHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 766553 2 567899999999999887 4566666666555
Q ss_pred hhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccc
Q 011657 177 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 256 (480)
Q Consensus 177 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (480)
+||+.+++..+..++..+.....|++++ +
T Consensus 176 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~ 204 (399)
T PRK05122 176 -GLAGLGLLIMLLALLGLLLARPRPAVPP--------------------------------------------------V 204 (399)
T ss_pred -cHHHHHHHHHHHHHHHHHHHhcCCCCCC--------------------------------------------------C
Confidence 8999888776665543333322232210 0
Q ss_pred ccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011657 257 EDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER 336 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 336 (480)
++++.+.++.++.. +.......+..+ .+.....+.+.+..+.+. .+.+.......++.+++.++.+++.||
T Consensus 205 ~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~r 275 (399)
T PRK05122 205 KGERLPFRRVLGRV--WPYGMGLALASI----GFGTIATFITLYYAARGW---DGAALALTLFGVAFVGARLLFGNLINR 275 (399)
T ss_pred CccchhHHHHHHHH--HHHHHHHHHHHH----HHHHHHHHHHHHHHHccc---ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122222211 111111111111 122344556666666655 345666778888899999999999999
Q ss_pred hcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHH
Q 011657 337 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG 416 (480)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 416 (480)
+++|+.+..+..+..++..++.. .++.+..+....+.+.+.+. ..+.......|..|+++|+++.|+.+....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 349 (399)
T PRK05122 276 LGGLRVAIVSLLVEILGLLLLWL-----APSPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDL 349 (399)
T ss_pred hccHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999888877777766655543 12333333333333333332 2344445667889999999999999999999
Q ss_pred HHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCC
Q 011657 417 ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 417 g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
|..+++.+.|.+.+..|++..+++.+++.+++.+..+.+
T Consensus 350 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 350 SLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998888877777665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=238.17 Aligned_cols=355 Identities=19% Similarity=0.217 Sum_probs=236.0
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
+++.++..++...+++.+|.+.++ +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 16 AFGFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 455577777888888899999987 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHH
Q 011657 138 ALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMY 183 (480)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f 183 (480)
.++++++++++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~f 167 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIF 167 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHHH
Confidence 99999999999999999999999876 5666666666655 999999
Q ss_pred hchhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHH---HhCCCCCCCChhhHHHH----------H
Q 011657 184 GASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCR---LRGQSIGDSAPTEVDEI----------L 249 (480)
Q Consensus 184 ~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~ 249 (480)
++..+...+..+ .....|+.+. ..++.+..+........... ..+.+............ .
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNYTM------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLY 241 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHH
Confidence 998877666433 3334454321 00111111111111111100 01111100011000000 0
Q ss_pred HhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHH
Q 011657 250 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTG 328 (480)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 328 (480)
...+....++..+ .++++++.++..+...++..+ .......+.|++++. .|. ++.+.++......++.+++.+
T Consensus 242 ~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~ 315 (471)
T PRK10504 242 LLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRI----GSGMLPFMTPVFLQIGLGF-SPFHAGLMMIPMVLGSMGMKR 315 (471)
T ss_pred HHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 0001111111222 246777765554443333322 233555677888775 677 788899999989999999999
Q ss_pred HHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHH
Q 011657 329 LAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLS 408 (480)
Q Consensus 329 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 408 (480)
+.+++.||+|+|+++..+..+..+...++... ....+.+.......+.+.+.+... +....+..+..|++.++.+.|
T Consensus 316 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 392 (471)
T PRK10504 316 IVVQVVNRFGYRRVLVATTLGLALVSLLFMLV--ALLGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNS 392 (471)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHH
Confidence 99999999999999988877776665554431 111111212222222222222222 344467778899999999999
Q ss_pred HHHHHHHHHHHhHhhcchhhHHhhCcc
Q 011657 409 VAVLVNFGANALVTFAFSPLKDLLGAG 435 (480)
Q Consensus 409 ~~~~~~~~g~~i~~~~~~~~~~~~g~~ 435 (480)
+.++...+|..+++.+.|.+.+..|+.
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999998877653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=243.35 Aligned_cols=342 Identities=14% Similarity=0.155 Sum_probs=223.1
Q ss_pred ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCch
Q 011657 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF 147 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 147 (480)
...++...|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++++++++++++
T Consensus 35 ~~~~~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 107 (455)
T TIGR00892 35 PKAVTVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNV 107 (455)
T ss_pred hcchhhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhH
Confidence 34567778888877 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHhH---------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHH
Q 011657 148 IIMVV-GRFVFGIGIGL---------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIM 193 (480)
Q Consensus 148 ~~l~~-~r~l~G~g~g~---------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~ 193 (480)
+.+++ .|+++|++.+. +++.+++.+.+.. +||+.|++.+++.++.
T Consensus 108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHC 186 (455)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 98875 57999988775 4555555555555 9999999999887764
Q ss_pred HHHHhcc-cCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhh
Q 011657 194 GMGMWWL-PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL 272 (480)
Q Consensus 194 ~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (480)
.+..+++ ++.+... +. + ++.. .+.+.+.. ..+... . ...++..+....+.++++.+
T Consensus 187 ~v~~~~~~~~~~~~~--~~--~--------~~~~------~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~ 243 (455)
T TIGR00892 187 CVCGALMRPVGPSQR--VS--K--------SKSK------EGLPPDGS-TKKLSK---K-STAEKINRFLDFSLFTHRGF 243 (455)
T ss_pred HHHHHHhCCCCcccc--cc--c--------cccc------ccCCCCCc-cccccc---c-chhhhhhhhcchHHhcCchH
Confidence 4444333 3221100 00 0 0000 00000000 000000 0 00000001111245566555
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh--cCchHHHhhh--H
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL--GRRPLLLGGV--S 348 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~--~ 348 (480)
+.......+... .......+.+.+.++.|. +..+++...+..+++.++++++.+++.||. ++|+....+. .
T Consensus 244 ~~~~~~~~l~~~----~~~~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 244 LVYLSGNVIMFL----GFFAPIIFLVPYAKDKGV-DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred HHHHHHHHHHHH----HccchHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 443333222222 222344566777788888 888999999999999999999999999973 3333333322 2
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhh
Q 011657 349 GIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPL 428 (480)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 428 (480)
+.+++.+++.. ..+.+..++..++.+ .......+...+++.|.+|+++++++.|+++....+|.+++|.+.|.+
T Consensus 319 ~~~l~~ll~~~-----~~~~~~~~i~~~~~G-~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 319 FNGLTHLLCAL-----AGDYTGLVIYCIFFG-LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred HHHHHHHHHHH-----hchHHHHHHHHHHHH-HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 22222222211 123333333333333 333334455667888999999999999999999999999999999999
Q ss_pred HHhhC-ccHHHHHHHHHHHHHHHh
Q 011657 429 KDLLG-AGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 429 ~~~~g-~~~~~~~~~~~~~~~~~~ 451 (480)
.+..| |...|++.+++.+++.+.
T Consensus 393 ~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 393 VDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred ehhcCCcchHHHHhhHHHHHHHHH
Confidence 99875 888888877766665543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=237.91 Aligned_cols=343 Identities=15% Similarity=0.083 Sum_probs=236.4
Q ss_pred hhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 011657 48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL 127 (480)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 127 (480)
+..++..+.+.+..+...++...+.+.+|.+.++ +|.+..+.++..+.+.+++.+++++.|+++||+|||+++
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 81 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM 81 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 4556666677777777777888888889998887 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhh
Q 011657 128 ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLV 173 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~ 173 (480)
.++.++.+++.+++.++++++.+++.|+++|++.+. +|+.+++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 82 LAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988765 4444555554
Q ss_pred hhhhhhHHHHhchhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhh
Q 011657 174 DLVAGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL 252 (480)
Q Consensus 174 ~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (480)
+.. +||+.|++.++..++..+ ..+..||+++.. + + +..
T Consensus 162 ~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~------------------~~~-------- 200 (406)
T PRK15402 162 HVL-PWRGMFVLFAALAALSFFGLWRAMPETAGRV---G-----------E------------------KLS-------- 200 (406)
T ss_pred Hcc-CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---c-----------c------------------ccc--------
Confidence 544 999999998888776444 344567663210 0 0 000
Q ss_pred hcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 011657 253 SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAV 331 (480)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 331 (480)
.++....++++++++..+...+...+.... ......+.|.++ +..+. ++.+.+.......++.+++.++.+
T Consensus 201 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~-~~~~~g~~~~~~~~~~~~g~~~~g 272 (406)
T PRK15402 201 ---LKELGRDYKLVLKNRRFVAGALALGLVSLP----LLAWIALSPVILISGEQL-SSYEYGLLQVPVFGALIAGNLTLA 272 (406)
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112345566666555443333222221 123334456554 44677 777788877778888899999999
Q ss_pred HHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHH
Q 011657 332 LVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV 411 (480)
Q Consensus 332 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 411 (480)
++.||+++|+.+..+..+..++..++...........++......+...+.+... +......... +++++++..++.+
T Consensus 273 ~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~~-~~~~~g~~~~~~~ 350 (406)
T PRK15402 273 RLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN-AGLYRLTLFS-SDVSKGTVSAAMG 350 (406)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh-hhHHHHHhhh-ccccccHHHHHHH
Confidence 9999999999988887777766666554321112222233333333333333222 2322333333 3488999999999
Q ss_pred HHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHH
Q 011657 412 LVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLS 448 (480)
Q Consensus 412 ~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (480)
..+.++..+++.+.+.+.+..+.....+..++..++.
T Consensus 351 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 351 MLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 9999999999999999988877654444433333333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=230.81 Aligned_cols=313 Identities=19% Similarity=0.206 Sum_probs=219.5
Q ss_pred ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHH
Q 011657 70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII 149 (480)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (480)
...+.+|.+.++ +|.++.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.
T Consensus 38 ~~~~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
T PRK10213 38 LPVSLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSL 110 (394)
T ss_pred HHHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence 445567788777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHH
Q 011657 150 MVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM 195 (480)
Q Consensus 150 l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~ 195 (480)
+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.++++++..+
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHH
Confidence 99999999999886 6667777666665 999999998877766433
Q ss_pred H-HhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhH
Q 011657 196 G-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA 274 (480)
Q Consensus 196 ~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (480)
. ....||+|+. +++...+.++.++++..+.
T Consensus 190 ~~~~~~p~~~~~-------------------------------------------------~~~~~~~~~~~l~~~~~~~ 220 (394)
T PRK10213 190 WIIKSLPSLPGE-------------------------------------------------PSHQKQNTFRLLQRPGVMA 220 (394)
T ss_pred HHHHHCCCCCcc-------------------------------------------------cccchhHHHHHhcCHHHHH
Confidence 3 3345664310 0001112345566665554
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHH-
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS- 353 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~- 353 (480)
..+...+.+... .....+..|.+.++.|+ +..+.+......+++.+++.++.+++.||.+ |+.+..+..+..+.
T Consensus 221 ~~~~~~~~~~~~---~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~ 295 (394)
T PRK10213 221 GMIAIFMSFAGQ---FAFFTYIRPVYMNLAGF-GVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH
Confidence 433322222221 11233345777777888 7888899999999999999999999999954 44433333332222
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC
Q 011657 354 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG 433 (480)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g 433 (480)
+.+... .++.+.......+.+.+.. ...+...+++.+..| +.++...++.....++|..+|+.+.|.+.|..|
T Consensus 296 ~~l~~~-----~~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g 368 (394)
T PRK10213 296 LVLTLW-----GSDKIVATGVAIIWGLTFA-LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG 368 (394)
T ss_pred HHHHHH-----hhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 232221 2233333333333333333 333444456777777 556777788888889999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 011657 434 AGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~ 451 (480)
+...+...+.+.++..+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 369 LTSPLMLSGTLMLLTALL 386 (394)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 887777766655544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=239.47 Aligned_cols=362 Identities=20% Similarity=0.200 Sum_probs=251.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----- 163 (480)
++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+++++++|++.+++.|+++|++.++
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence 777889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ------------------------hHHhhh-hhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCch
Q 011657 164 ------------------------GGYGIG-SLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDM 218 (480)
Q Consensus 164 ------------------------~g~~~g-~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~ 218 (480)
.++.++ ...+....+||+.+++..+++++.++.+++.||+|||+..++
T Consensus 193 ~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g------- 265 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG------- 265 (521)
T ss_pred HhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC-------
Confidence 111111 111123348999999999999987777777789999999988
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCCh-hhHHHH--HHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHH
Q 011657 219 QDLRESAISCLCRLRGQSIGDSAP-TEVDEI--LTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLY 295 (480)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (480)
+.+++.+.+++..+.+...... ...+.. .........+++..+.++++.+..+...+...+.++.. ...+
T Consensus 266 --~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-----~~~y 338 (521)
T KOG0255|consen 266 --RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF-----SLVY 338 (521)
T ss_pred --chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH-----hHHH
Confidence 7788888888876544222111 111111 11111112233456888888875554444443333221 1122
Q ss_pred hH-HHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHH
Q 011657 296 YA-ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA 374 (480)
Q Consensus 296 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (480)
+. +......|. .........+.....+....+...|+.|||.....+..+..++++..++... ....+.....
T Consensus 339 ~gl~~~~~~lg~----~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 412 (521)
T KOG0255|consen 339 YGLSLNVSGLGG----NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD--DLGGWLHWIL 412 (521)
T ss_pred HhhhhhhhhcCc----hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHH
Confidence 22 122222332 4555566666688888888899999999999999999998888888765422 1111123333
Q ss_pred HHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 375 LLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
..+..++...++... +.+..|++|+..|..+.+.......++++++|.+...... ......+.+++.+..+...+...
T Consensus 413 ~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 490 (521)
T KOG0255|consen 413 PLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLL 490 (521)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHh
Confidence 333344444444434 6899999999999999999999999999999987644433 33333334456666666666666
Q ss_pred CCCCCCCChhhhhhhhhc
Q 011657 455 XXXXXXXSFQRQRGLRLR 472 (480)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~ 472 (480)
+.||++++...+...+.+
T Consensus 491 ~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 491 LLPETKGKPLPGTLLDAE 508 (521)
T ss_pred cCcccCCCCCchhHHHHH
Confidence 789999887655444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=238.41 Aligned_cols=329 Identities=15% Similarity=0.116 Sum_probs=228.8
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
.++.++.+.+....++.+|.+.++ +|++..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++
T Consensus 13 ~~~~~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~ 85 (394)
T PRK03699 13 FLSYALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA 85 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556677777888899999999988 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHH
Q 011657 138 ALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMY 183 (480)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f 183 (480)
.++++++++++.+++.|+++|++.+. +++.+.+.+.....+||+.|
T Consensus 86 ~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f 165 (394)
T PRK03699 86 VAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVY 165 (394)
T ss_pred HHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999998876 22333333333334899999
Q ss_pred hchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccH
Q 011657 184 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 263 (480)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (480)
++.+++.++..+..++ .+.|+.. +++ + ++ ++...
T Consensus 166 ~~~~~~~~~~~~~~~~-~~~p~~~-~~~-----------~------------~~-----------------~~~~~---- 199 (394)
T PRK03699 166 ACIGLVYVAIFILTLF-SEFPALG-KHA-----------P------------KA-----------------DKPVA---- 199 (394)
T ss_pred HHHHHHHHHHHHHHHh-cCCcccc-ccC-----------c------------cc-----------------cCccc----
Confidence 9888877665443332 2222100 000 0 00 00000
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 264 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
++.+ ++..+...+.. +........+..|.|.++++ .|. +..+.+...+...++..+++++.++++||+++|+.
T Consensus 200 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~p~~l~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~ 273 (394)
T PRK03699 200 KEKW-GIGVLFLAIAA----LLYILAQLTFISWVPEYAQKKFGM-SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI 273 (394)
T ss_pred cccC-ChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCC-ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence 0000 11111111111 22222233556788888854 577 88889999999999999999999999999999998
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
+.....+..+.+.++.. ..+........+..+ .......+...++..|..| +.++...+.......+|..++|
T Consensus 274 l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p 346 (394)
T PRK03699 274 LTVLAGLALVLMYLFVN-----TDDPSHLLYAILGLG-FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTF 346 (394)
T ss_pred HHHHHHHHHHHHHHHHH-----cCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHH
Confidence 87766555554443322 122223222223332 2222333444456667666 4467788899999999999999
Q ss_pred hcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 423 FAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
.+.|.+.+..|++..+++.+++.+++.+..
T Consensus 347 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 347 VVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 999999999999988888877776665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=242.53 Aligned_cols=343 Identities=15% Similarity=0.113 Sum_probs=241.4
Q ss_pred cccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh---
Q 011657 67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL--- 143 (480)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--- 143 (480)
......+.+|.+.++ ++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+.
T Consensus 32 ~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~ 104 (417)
T PRK10489 32 GLGLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF 104 (417)
T ss_pred HHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence 344566677777766 7889999999999999999999999999999999999999988888877665542
Q ss_pred --cCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchh
Q 011657 144 --APDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGAST 187 (480)
Q Consensus 144 --~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~ 187 (480)
.++++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.+
T Consensus 105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~ 183 (417)
T PRK10489 105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAA 183 (417)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHH
Confidence 57889999999999988765 5666666665554 8999999888
Q ss_pred HHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHh
Q 011657 188 PLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF 267 (480)
Q Consensus 188 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (480)
+..++..+..+.+||+++.. . + . +.. .++....++..+
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~---~-----~--------------------~---~~~-----------~~~~~~~~~~~~ 221 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPP---Q-----P--------------------R---EHP-----------LRSLLAGFRFLL 221 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCC---c-----c--------------------c---ccc-----------hHHHHHHHHHHH
Confidence 77776666666677653200 0 0 0 000 000011233455
Q ss_pred hhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhh
Q 011657 268 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGG 346 (480)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 346 (480)
+++..+..++...+... ......+.|.+.++ .|. ++.+.++......++.+++.++.+++.||.++++.+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~-~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~ 295 (417)
T PRK10489 222 ASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQM-GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLS 295 (417)
T ss_pred cChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCC-ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHH
Confidence 55544443332222111 12344567777777 677 788899999999999999999999999997777777777
Q ss_pred hHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcch
Q 011657 347 VSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFS 426 (480)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~ 426 (480)
..+.+++.+++.. ..+.+......++++ .......+...+++.|..|++.||++.|+.+....+|..+++.+.|
T Consensus 296 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G 369 (417)
T PRK10489 296 TLGSFLAVGLFGL-----MPMWILAVLCLALFG-YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG 369 (417)
T ss_pred HHHHHHHHHHHHc-----cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence 7666666554432 122222222222222 2222233455578899999999999999999999999999999999
Q ss_pred hhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhhhh
Q 011657 427 PLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGLRL 471 (480)
Q Consensus 427 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (480)
.+.+..|+...+++.+.+.++..++.....+++|++++++.+++.
T Consensus 370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 370 GLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 999999988888888877776666666667777776666555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=227.59 Aligned_cols=327 Identities=17% Similarity=0.131 Sum_probs=224.7
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
.++.++.+.+....++.+|.+.++ +|.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 12 LCGLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhH------------------------------hHHhhhhhhhhhhh--hhHHHHhc
Q 011657 138 ALVTALAPDFIIMVVGRFVFGIGIGL------------------------------GGYGIGSLLVDLVA--GWRYMYGA 185 (480)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~~~~~--~wr~~f~~ 185 (480)
++++++++|++.++++|+++|++.+. +|..+|+.+..... .++..++.
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 99999999999999999999999876 22222222221110 01111111
Q ss_pred hhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHH
Q 011657 186 STPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 265 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (480)
.++........ .+.+..++ . + ++++..+.++
T Consensus 165 ~~~~~~~~~~~-~~~~~~~~--------------------------------~---~-------------~~~~~~~~~~ 195 (381)
T PRK03633 165 TGLVLAAILPL-LFTRILNQ--------------------------------Q---A-------------ENHDSTSIWP 195 (381)
T ss_pred HHHHHHHHHHH-HHhcccCC--------------------------------C---C-------------CCCCCCCHHH
Confidence 11111111111 11111100 0 0 0011123455
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHh
Q 011657 266 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLG 345 (480)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 345 (480)
.++++..+........... .......+.|.+.++.|. +..+.+.......++.+++++..+++.||+++|+.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~ 270 (381)
T PRK03633 196 MLKLRQARLGVNGCIISGI----VLGSLYGLMPLYLNHQGM-SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRV 270 (381)
T ss_pred HHHhcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHH
Confidence 6666654433222222111 122344567888888887 77888888899999999999999999999999998887
Q ss_pred hhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc
Q 011657 346 GVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF 425 (480)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~ 425 (480)
+..+..++...+. . . ........+++. ......|...+.+.|..|+++++.+.+..+...++|..++|.+.
T Consensus 271 ~~~~~~~~~~~~~------~-~-~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~ 341 (381)
T PRK03633 271 QVFVVILGSIAML------S-Q-AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFT 341 (381)
T ss_pred HHHHHHHHHHHHh------h-h-HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666554332 1 1 111112222222 22233466667788999988888888888888999999999999
Q ss_pred hhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 426 SPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
|.+.|+.|+...|.+.+.+.++..+..++
T Consensus 342 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 342 AMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888887766655443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=238.42 Aligned_cols=367 Identities=17% Similarity=0.112 Sum_probs=229.9
Q ss_pred HHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
....+.+.....+........|.+++ +|++..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~p~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 30 LGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHhccHHhhhHHHHH--------cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 33344555555566666666776653 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CchHHHHHHHHHHHHHHhH------------------------------hHHhhhh----hhhhhh
Q 011657 135 LVGALVTALA----PDFIIMVVGRFVFGIGIGL------------------------------GGYGIGS----LLVDLV 176 (480)
Q Consensus 135 ~~~~~~~~~~----~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~----~l~~~~ 176 (480)
+++.+++++. ++++.+.+.|++.|++.|. +|..+++ ......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9999888765 4677888999999988764 2223322 222223
Q ss_pred hhhHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcc
Q 011657 177 AGWRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 255 (480)
Q Consensus 177 ~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (480)
.+||+.|++.++++++ .++..+++||+|+....+. ..+ .+++..... .. +.+.+
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~-~~-------~~~~~ 236 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP---------IEE--------YRNDYPDDY-NE-------KAEQE 236 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC---------chh--------ccccccccc-cc-------ccccc
Confidence 4899999999888877 4455666788775311000 000 000000000 00 00000
Q ss_pred cccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011657 256 GEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVV 334 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 334 (480)
.+.++...+.+++++..+...+...+... .......|.|.++++ .|. ++.++++...+..+.++++.++.|++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~ 311 (438)
T TIGR00712 237 LTAKEIFMQYVLPNKLLWYIAIANVFVYL----LRYGVLDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTLLCGWMS 311 (438)
T ss_pred cchHHHHHHHHccCchHHHHHHHHHHHHH----HHHHHHHhHHHHHHHccCC-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011234555555544333322222 223555688888876 466 888889999999999999999999999
Q ss_pred hhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHH
Q 011657 335 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN 414 (480)
Q Consensus 335 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 414 (480)
||+++++....+.....+..............+.+......+.. +....+..........|.+|++.|+++.|+.+...
T Consensus 312 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 390 (438)
T TIGR00712 312 DKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVI-GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 390 (438)
T ss_pred HHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HHHHccHHHHHHHHHHHhcChhheeeehhhhchHH
Confidence 99965432222322222221111111111111222222222222 11111111121245678999999999999999998
Q ss_pred HHHH-HhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 415 FGAN-ALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 415 ~~g~-~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
++++ +++|.+.|.+.|+.|+...+++.+++.+++.+..+.+.+|.|
T Consensus 391 ~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 391 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8875 689999999999999999998888877777777766666655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=229.11 Aligned_cols=316 Identities=19% Similarity=0.157 Sum_probs=214.3
Q ss_pred ccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---H
Q 011657 67 DIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---A 142 (480)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~ 142 (480)
......+.+|. +.+| +|.|..+.|++.+.+.+++.++++++|+++||+|||++++.+.++..++.+.. +
T Consensus 30 ~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~ 102 (392)
T PRK12382 30 TVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAA 102 (392)
T ss_pred HHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhh
Confidence 45566677775 4556 89999999999999999999999999999999999999999988877765433 2
Q ss_pred h-----cCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHH
Q 011657 143 L-----APDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMY 183 (480)
Q Consensus 143 ~-----~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f 183 (480)
. .++++.+++.|+++|++.+. +|+.+++.+.+.. +||+.+
T Consensus 103 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~ 181 (392)
T PRK12382 103 ILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALA 181 (392)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHH
Confidence 2 35789999999999999875 5556666555554 899877
Q ss_pred hchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccH
Q 011657 184 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 263 (480)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (480)
.+..+..++........||.++ +++.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~ 211 (392)
T PRK12382 182 LTTMVLPLLAWAFNGTVRKVPA--------------------------------------------------HAGERPSL 211 (392)
T ss_pred HHHHHHHHHHHHHHHhccCCCC--------------------------------------------------CcccCchH
Confidence 7655444333222222232210 00000112
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHH
Q 011657 264 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLL 343 (480)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 343 (480)
++.++.. +...+...+.. ........+.+.++++.+. + +.+.......++.+++.++.|++.||+++|+.+
T Consensus 212 ~~~~~~~--~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~ 282 (392)
T PRK12382 212 WSVVGLI--WKPGLGLALQG----VGFAVIGTFVSLYFASKGW-A--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA 282 (392)
T ss_pred HHHHHHH--HHhHHHHHHHH----HHHhHHHHHHHHHHHhcCC-c--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh
Confidence 2222211 11111111111 1122344566667777665 3 355666777888889999999999999999998
Q ss_pred HhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhh
Q 011657 344 LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 423 (480)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~ 423 (480)
..+..+..++.+++.. ..+.+.......+.+.+.+. ..+...+...|.+|+++|+++.|+.++...+|..++|.
T Consensus 283 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~ 356 (392)
T PRK12382 283 IVSLLVETVGLLLLWL-----APTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGP 356 (392)
T ss_pred HHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777776665443 12333333333333333322 33444467788899999999999999999999999999
Q ss_pred cchhhHHhhCccHHHHHHHHHHHHHHHhcCCC
Q 011657 424 AFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 424 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
+.|.+.++.|++..|.+.+++.+++.++.+..
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 357 LAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888888777765543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-28 Score=233.57 Aligned_cols=365 Identities=13% Similarity=0.094 Sum_probs=236.3
Q ss_pred hHHHHhhhhhcccccccccccccccccCCCCCC---------------CccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 011657 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSG---------------ISWYDLSSVEIGLITSGSLYGALIGSILAFNI 117 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l 117 (480)
+..++.++......|+..++.+.+.+.++.... +.+++.+..+.|++.+.+.+++.+++++.|++
T Consensus 20 i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l 99 (465)
T TIGR00894 20 LSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYL 99 (465)
T ss_pred HHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHH
Confidence 334445555666778888888888876522111 01389999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHhH--------------------------------
Q 011657 118 ADILGRRRELILAALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGL-------------------------------- 163 (480)
Q Consensus 118 ~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~-------------------------------- 163 (480)
+||+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+.
T Consensus 100 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 179 (465)
T TIGR00894 100 AGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLG 179 (465)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887554 6688999999999999887
Q ss_pred --hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHh-cccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCC
Q 011657 164 --GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS 240 (480)
Q Consensus 164 --~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (480)
+|+.+++.+.+...+||+.|++.++++++..+.++ +.+|+|+... + + .+++. +.++... +
T Consensus 180 ~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--------~-~-~~~~~-~~i~~~~--~---- 242 (465)
T TIGR00894 180 TFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--------C-I-SKFEK-KYINSSL--Q---- 242 (465)
T ss_pred HHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC--------C-C-CHHHH-HHHHhhc--c----
Confidence 34444444444323999999999998887555444 4566664110 0 0 00010 0000000 0
Q ss_pred ChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHH
Q 011657 241 APTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILL 319 (480)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 319 (480)
.+..+.+.+..++++++++..+...+..+ ........+..|.|.++++ .|. +..+.++.....
T Consensus 243 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lp~~l~~~~g~-s~~~~g~~~~~~ 306 (465)
T TIGR00894 243 -----------GQKGSTRQSLPIKAIPKSLPVWAIWFAIF----GHFWLYTILPTYLPTFISWVLRV-SGKENGLLSSLP 306 (465)
T ss_pred -----------cccCCCCCCCCHHHHhcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCc-ChHHhHHHHHHH
Confidence 00001112335778887776555444332 2233344666788888765 577 888999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHH--------HhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccc
Q 011657 320 GLFKLIMTGLAVLVVERLGRRPLL--------LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGW 391 (480)
Q Consensus 320 ~~~~~~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
.++.+++.++.|+++||+++|+.. ..+......+..++.. .....+.+..+..+.+...+. ....+..+
T Consensus 307 ~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 383 (465)
T TIGR00894 307 YLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL--PYLSAAFYLTIIILTLANAVS-SGPLAGVL 383 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHHHHHh-hhhhhhhh
Confidence 999999999999999998654221 1111111111111111 111122222222232222222 22223333
Q ss_pred eeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh---CccHHHHHHHHHHHHHHHhcCC
Q 011657 392 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL---GAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 392 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
....|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...|.+.+++.+++.++...
T Consensus 384 ~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 384 INSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 55667777 58999999999999999999999999988753 3667888888888887766554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=230.57 Aligned_cols=341 Identities=21% Similarity=0.271 Sum_probs=226.6
Q ss_pred HhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011657 57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV 136 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 136 (480)
..+..+..+++....+...|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445566677777788888988887 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHH
Q 011657 137 GALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYM 182 (480)
Q Consensus 137 ~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~ 182 (480)
+.++..++++++.+++.|++.|++.+. +|+.+++.+.+.. +||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~ 173 (398)
T TIGR00895 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSL 173 (398)
T ss_pred HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cceee
Confidence 999999999999999999999998875 4444444444444 89999
Q ss_pred HhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc
Q 011657 183 YGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV 261 (480)
Q Consensus 183 f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (480)
|++.++..++ ..+..+++||++++...++ .++..+..++.......+... +. .+.+.+++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~ 238 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMRFLPESIDFLVSKR----------PETVRRIVNAIAPQMQAEAQS-AL----PEQKATQGTKRS 238 (398)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCChHHHhcC----------HHHHHHHHHHHHHhccccccc-cc----cccccccchhhH
Confidence 9998766555 5556667898876543321 111111111111111000000 00 000000011111
Q ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCch
Q 011657 262 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP 341 (480)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 341 (480)
..+.+++.+..+........ .+...........+.|.+.++.|. +..+.+.......++.+++.++.+++.||+++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (398)
T TIGR00895 239 VFKALFQGKTARITVLLWLL-YFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV 316 (398)
T ss_pred HHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 12223333322322222222 222233344566677888888888 7888999999999999999999999999999984
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhH
Q 011657 342 LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALV 421 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~ 421 (480)
..... .+..+...++... ..+.+......++.+.+.+ ...+..+++..|.+|++.|+++.|+.+.+..+|.+++
T Consensus 317 ~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g 390 (398)
T TIGR00895 317 TALLL-LLGAVFAVLVGST----LFSPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIG 390 (398)
T ss_pred HHHHH-HHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 3333322222210 1233333333333333333 3345666899999999999999999999999999999
Q ss_pred hhcchhh
Q 011657 422 TFAFSPL 428 (480)
Q Consensus 422 ~~~~~~~ 428 (480)
|.+.|.+
T Consensus 391 ~~~~G~l 397 (398)
T TIGR00895 391 PILAGYL 397 (398)
T ss_pred HHhHHhc
Confidence 9998865
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=221.45 Aligned_cols=327 Identities=13% Similarity=0.089 Sum_probs=223.3
Q ss_pred cccccccccccccC-CCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc-
Q 011657 67 DIGSTSCATISIES-PTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA- 144 (480)
Q Consensus 67 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 144 (480)
.-...+++.+.+.+ + +|+|..|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++.+++
T Consensus 49 ~w~~~~~l~~~~~~~~-------~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~ 121 (462)
T PRK15034 49 VWMLFSAVTVNLNKIG-------FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV 121 (462)
T ss_pred HHHHHHHHHHHhhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777665 5 99999999999999999999999999999999999999999999999999999987
Q ss_pred ----CchHHHHHHHHHHHHHHhH-----------------------------hHHhhhhhhhh-----------------
Q 011657 145 ----PDFIIMVVGRFVFGIGIGL-----------------------------GGYGIGSLLVD----------------- 174 (480)
Q Consensus 145 ----~~~~~l~~~r~l~G~g~g~-----------------------------~g~~~g~~l~~----------------- 174 (480)
+|++.+++.|++.|++.+. +|..++.++..
T Consensus 122 ~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~ 201 (462)
T PRK15034 122 QNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVP 201 (462)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8999999999999998444 22221111110
Q ss_pred ----hhhhhHHHHhchhHHHHHHHHHHhc-ccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 011657 175 ----LVAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL 249 (480)
Q Consensus 175 ----~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (480)
...+||..+++..++.++..+..++ +++.|.
T Consensus 202 ~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-------------------------------------------- 237 (462)
T PRK15034 202 QADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-------------------------------------------- 237 (462)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--------------------------------------------
Confidence 0225888888877777765544444 333221
Q ss_pred HhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Q 011657 250 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGL 329 (480)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 329 (480)
++......++.+|+++.|...+.. ++.+..+..+.++.|++.++ .+ +.........+..+...+.+++
T Consensus 238 ------~~~~~~~~~~vlk~~~~Wllslly----~~tFG~fvg~s~~lp~~~~~-~~-~~~~~l~~~~l~~l~~~l~rpl 305 (462)
T PRK15034 238 ------SRASIADQLPVLQRLHLWLLSLLY----LATFGSFIGFSAGFAMLAKT-QF-PDVNILRLAFFGPFIGAIARSV 305 (462)
T ss_pred ------cccCHHHHHHHhCCCchhHHHHHH----HHHHHHHHHHHHHHHHHHHH-Hc-ChHHHHHHHHHHHHHHHHHHHh
Confidence 111122355677777666544433 33444455677788888766 33 3333333455567888899999
Q ss_pred HHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH-HHHHHHHHHHHhcccccccceeecccCCh--------
Q 011657 330 AVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA-VVALLLYVGCYQLSFGPIGWLMISEVFPL-------- 400 (480)
Q Consensus 330 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------- 400 (480)
+|+++||+|+++++.++++.+.++...+..........+... ...+.......+.+. ...+-++.+.+|+
T Consensus 306 gG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gn-gsvfk~ip~~f~~~~~~~~~~ 384 (462)
T PRK15034 306 GGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGS-GSTFQMIAVIFRQITIYRVKM 384 (462)
T ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccc-hHHHHhhHHHHhhhhhhcccc
Confidence 999999999999998888776666544332221111122222 222222223333333 3444677777774
Q ss_pred -------------hhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-ccHHHHHHHHHHHHHHHhcCCCCC
Q 011657 401 -------------RLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXXXX 457 (480)
Q Consensus 401 -------------~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 457 (480)
++.|.+.|+....+.+|+++.|.+.|...+..| +...++.+.+..+++.++.+.+..
T Consensus 385 ~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 385 KGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred cccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 257889999999999999999999999988866 555788888888888777766543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=234.92 Aligned_cols=357 Identities=17% Similarity=0.230 Sum_probs=241.7
Q ss_pred HHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
..++++.++..++....++.+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 77 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF 77 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence 455667788888999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhH
Q 011657 135 LVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWR 180 (480)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr 180 (480)
+++++++++++|++.++++|+++|++.+. +|+.+++.+.+.. +||
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~ 156 (485)
T TIGR00711 78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HWR 156 (485)
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cce
Confidence 99999999999999999999999999886 4555556555554 999
Q ss_pred HHHhchhHHHHHH-HHHHhcccCchHHHHHhcccccCchhhhHHHHH--HHHH--HHhCCCCCCCChhhHHHH-H-----
Q 011657 181 YMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAI--SCLC--RLRGQSIGDSAPTEVDEI-L----- 249 (480)
Q Consensus 181 ~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~-~----- 249 (480)
+.|++.++++++. .+..+++||+++ ...++.|..+..-... .... ...+.+.++....+.... .
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (485)
T TIGR00711 157 WIFLINVPIGIIVVVVAFFILPRDKP-----AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVA 231 (485)
T ss_pred ehhhhhhHHHHHHHHHHHHHcCCccc-----cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHH
Confidence 9999998887764 344455666432 0011111111100000 0010 111222222221111100 0
Q ss_pred ---HhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHH
Q 011657 250 ---TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLI 325 (480)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 325 (480)
....+.+.+++....++++++.++...+..++..+. .....++.|.++++ .|. ++.++++......++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~-s~~~~g~~~~~~~~~~~~ 306 (485)
T TIGR00711 232 IIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQVLGY-TALQAGLHILPVGLAPML 306 (485)
T ss_pred HHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 000001111122223566666555544433333322 23445677777766 566 888999999999999999
Q ss_pred HHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh-HHHHHHHHHHHHHhcccccccceeecccCChhhhh
Q 011657 326 MTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA-VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRG 404 (480)
Q Consensus 326 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 404 (480)
+.++.|++.||++||+.+..+..+.+++..++... ...+.+. .......+.+.+.+....+.. ....+..|+++++
T Consensus 307 ~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g 383 (485)
T TIGR00711 307 SSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT--FTPDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIA 383 (485)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHh
Confidence 99999999999999999888887777766655421 1122222 223333333333333333333 5566778999999
Q ss_pred hHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 405 RGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 405 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
++.|+.++.+.+|+.+++.+.+.+.++.
T Consensus 384 ~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 384 RGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=231.31 Aligned_cols=332 Identities=14% Similarity=0.102 Sum_probs=224.5
Q ss_pred hhhcccccccccccccccccCCCCCCCccccCChhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVE-----IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
+.++.++......+.+|.+.++ +|.+..+ .+++.+.+.++..++++++|+++||+|||+++..+.++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 94 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 3455555666778888888877 7777544 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhH---------------------------------hHHhhhhhhhhhhhhhHH
Q 011657 135 LVGALVTALAPDFIIMVVGRFVFGIGIGL---------------------------------GGYGIGSLLVDLVAGWRY 181 (480)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~---------------------------------~g~~~g~~l~~~~~~wr~ 181 (480)
+++.+++.++++++.+++.|++.|++.+. +|+.+++.+.+.. +||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 173 (408)
T PRK09874 95 GIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLRP 173 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHH
Confidence 99999999999999999999999987655 4555555555544 8999
Q ss_pred HHhchhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccccc
Q 011657 182 MYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 260 (480)
Q Consensus 182 ~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (480)
.|++.+++.++..+ ..+++||+++... + ++ . .+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~-----------------~---------------~~~ 208 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENFQPVS------------K-KE-----------------M---------------LHM 208 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccccc------------c-hh-----------------h---------------hHH
Confidence 99999888776443 4445565431000 0 00 0 000
Q ss_pred ccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcc----hHHHHHHHHHHHHHHHHHHHHHHhh
Q 011657 261 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASD----ATRVSILLGLFKLIMTGLAVLVVER 336 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~ 336 (480)
.+..+.++++.....+....+... ........+.+.+..+.+. +..+ .+......+++.+++.+..|++.||
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr 284 (408)
T PRK09874 209 REVVTSLKNPKLVLSLFVTTLIIQ---VATGSIAPILTLYVRELAG-NVSNIAFISGMIASVPGVAALLSAPRLGKLGDR 284 (408)
T ss_pred HHHHHhCcCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001122333332221111111111 1112233344555555433 2222 3455566678888899999999999
Q ss_pred hcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHH
Q 011657 337 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG 416 (480)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 416 (480)
++||+.+..+..+..++.+.+.. ..+.+...+...+. +.......+...+...+..|++.+++..++.+.+..+
T Consensus 285 ~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 358 (408)
T PRK09874 285 IGPEKILITALIFSVLLLIPMSF-----VQTPLQLGILRFLL-GAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDI 358 (408)
T ss_pred cccchhHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHH-HhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHH
Confidence 99999988877766655554332 12333333322233 3333333455556777888889999999999999999
Q ss_pred HHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 417 ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 417 g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
|..++|.+.|.+.+..|++..|++.+++.+++.+..++
T Consensus 359 g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 359 GNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887776654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=226.45 Aligned_cols=308 Identities=15% Similarity=0.152 Sum_probs=216.0
Q ss_pred ccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcC
Q 011657 66 YDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP 145 (480)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 145 (480)
+......|.+|.+.++ +|.++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 20 ~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 20 LATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677788888877 999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHH
Q 011657 146 DFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAV 191 (480)
Q Consensus 146 ~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~ 191 (480)
+++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.+++.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~ 171 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITL 171 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 999999999999998765 4555555555554 99999999988887
Q ss_pred HHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhh
Q 011657 192 IMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC 271 (480)
Q Consensus 192 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (480)
+..+..++++|+++. + + +++++.+++++++++.
T Consensus 172 ~~~~~~~~~~~~~~~----~-----------~--------------------------------~~~~~~~~~~~~~~~~ 204 (401)
T PRK11043 172 LLILPTLRLKPSKKA----R-----------K--------------------------------QSQDALTFKQLLKSKT 204 (401)
T ss_pred HHHHHHHHcCCCCCc----c-----------c--------------------------------cchHHHHHHHHHcChh
Confidence 765555555554310 0 0 0001123455666655
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHH
Q 011657 272 LKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIV 351 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 351 (480)
.+...+....... .+.....+.|.+.++.|. +..+.++......++.+++.++.+++.||+++|+.+.......+
T Consensus 205 ~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~ 279 (401)
T PRK11043 205 YLGNVLIFAACSA----AFFAWLTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFA 279 (401)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4433332222111 122444567778888888 88888888888888999999999999999998887665555544
Q ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 352 ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
++.+.+...........+..+....+...+.+ ...+.......+..| +.++++.|+.++.+..++..++.+.|.+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 280 VSVIAIWLASLLSHPSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 44433322111112222222222333333333 334555456667677 5799999999999999999999999988875
Q ss_pred hCcc
Q 011657 432 LGAG 435 (480)
Q Consensus 432 ~g~~ 435 (480)
....
T Consensus 358 ~~~~ 361 (401)
T PRK11043 358 PLLT 361 (401)
T ss_pred ChhH
Confidence 4433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=232.47 Aligned_cols=338 Identities=18% Similarity=0.143 Sum_probs=221.4
Q ss_pred hhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011657 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV 140 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 140 (480)
++...++....+...|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence 445556777888889998887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHhH------------------------------hHHhhhh-----hhhhhhhhhHHHHhc
Q 011657 141 TALAPDFIIMVVGRFVFGIGIGL------------------------------GGYGIGS-----LLVDLVAGWRYMYGA 185 (480)
Q Consensus 141 ~~~~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~-----~l~~~~~~wr~~f~~ 185 (480)
++++++++.+++.|++.|++.+. +|..++. .+... .+||+.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (379)
T TIGR00881 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIV 155 (379)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CCchhHHHH
Confidence 99999999999999999998876 3333333 33333 499999999
Q ss_pred hhHHHHHH-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHH
Q 011657 186 STPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR 264 (480)
Q Consensus 186 ~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (480)
.+++.++. .+..++.||+|+....+. .+. . . .++.+. ..+..+.+.+..+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~--------------~-~~~~~~----~~~~~~~~~~~~~~~~~ 210 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDSPQSCGLPP----AEE--M--------------P-NEEPDG----DAEKKEEELTKKQIFLQ 210 (379)
T ss_pred HHHHHHHHHHHHheeeCCCccccccCc----ccc--C--------------c-cccccc----ccccccccccchHHHHH
Confidence 88877764 445556677653210000 000 0 0 000000 00000000111122344
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHH
Q 011657 265 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLL 343 (480)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 343 (480)
++++++..+...+...+... .......+.|.++++ .|. +..+.+.......++.+++.++.+++.||..+|+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 285 (379)
T TIGR00881 211 YVLLNKVLWYISLGYVFVYV----VRTGILDWSPLYLTQEKGF-SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG 285 (379)
T ss_pred HHHhcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch
Confidence 55666555444333333222 223455566776654 577 888899999999999999999999999986433222
Q ss_pred HhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhh
Q 011657 344 LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 423 (480)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~ 423 (480)
.............+...... ............+..+....+..+....+..|.+|++.|+++.|+.+....+|+.++|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 364 (379)
T TIGR00881 286 PLAVFFMALIIVSLLVYWLN-PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGL 364 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhh
Confidence 22211111111111111111 11122222222222222232333344567899999999999999999999999999999
Q ss_pred cchhhHHhhCccHH
Q 011657 424 AFSPLKDLLGAGIL 437 (480)
Q Consensus 424 ~~~~~~~~~g~~~~ 437 (480)
+.|.+.|..||+..
T Consensus 365 ~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 365 PLGYLADGFGWAGA 378 (379)
T ss_pred hHHHHHHhhccccc
Confidence 99999999998754
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=223.88 Aligned_cols=327 Identities=17% Similarity=0.144 Sum_probs=222.9
Q ss_pred hhccccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHH
Q 011657 61 GLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-LAALLYLVGA 138 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~ 138 (480)
+++.++......+.+|. +.++ +|.+..+.|++.+.+.++..+.+++.|+++||+||||.++ .+.++..++.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~ 78 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC 78 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 34555566677777776 4555 8999999999999999999999999999999999988765 4666667788
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHhH------------------------------------hHHhhhhhhhhhhhhhHHH
Q 011657 139 LVTALAPDFIIMVVGRFVFGIGIGL------------------------------------GGYGIGSLLVDLVAGWRYM 182 (480)
Q Consensus 139 ~~~~~~~~~~~l~~~r~l~G~g~g~------------------------------------~g~~~g~~l~~~~~~wr~~ 182 (480)
+++++++|++.+++.|+++|.+.+. +|+.+++.+.+.. +||+.
T Consensus 79 ~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~ 157 (375)
T TIGR00899 79 LLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVM 157 (375)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHH
Confidence 8899999999999999988866544 4444444444444 89999
Q ss_pred HhchhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc
Q 011657 183 YGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV 261 (480)
Q Consensus 183 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (480)
|++.++..++..+ ..+++||.|++..+ +..+.
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~ 190 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPG-----------------------------------------------ALTRL 190 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCccc-----------------------------------------------ccCcc
Confidence 9999888776444 44557887531000 00001
Q ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 011657 262 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR 340 (480)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 340 (480)
+.++.++++..+.......+.+.. ......+.|.++ ++.|. ++.+.+..........+++.++.|++.||++||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~ 265 (375)
T TIGR00899 191 EVRGLLASRDTRLLFVACTLMWGC----NILYIINMPLLIIHELGL-PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR 265 (375)
T ss_pred hhhhhhcCcchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch
Confidence 122344444444333332222221 122333455555 45677 777888887777777888899999999999999
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHh
Q 011657 341 PLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 420 (480)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i 420 (480)
+.+..+..+..+....+.. .++.+.......+...+.+ ...+....+..|..|+ +++++.++.+...++|..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 338 (375)
T TIGR00899 266 RLMLLAALAGVAFYTGLAA-----DNSLWALLMLQLLNAIFIG-ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWII 338 (375)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHH
Confidence 9887766554444333221 1222222222222222222 2234555677888885 5679999999999999999
Q ss_pred HhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 421 VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
+|.+.|.+.+..|++..+++.+++.+++.+...+
T Consensus 339 g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 339 AGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999888888777766544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=224.63 Aligned_cols=342 Identities=18% Similarity=0.141 Sum_probs=224.5
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 130 (480)
........+..+....+.....+.+|.+.++ ++.+..+.++..+++.+++.++++++|+++||+|||+++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~ 87 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITG 87 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHH
Confidence 3333444666667777888999999999887 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhh
Q 011657 131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLV 176 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~ 176 (480)
.++++++++++++++|++.++++|+++|++.+. +|+.+|+.+.+..
T Consensus 88 ~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~ 167 (413)
T PRK15403 88 ALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV 167 (413)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998765 5666666665554
Q ss_pred hhhHHHHhchhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcc
Q 011657 177 AGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 255 (480)
Q Consensus 177 ~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (480)
+||+.|++.+++.++..+ ..+.+||+++. ++ + +..
T Consensus 168 -gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~---~--------------------------~~~----------- 203 (413)
T PRK15403 168 -HWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GA---V--------------------------PFS----------- 203 (413)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cC---C--------------------------CCC-----------
Confidence 999999999888777544 34567886420 00 0 000
Q ss_pred cccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011657 256 GEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKLIMTGLAVLVV 334 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 334 (480)
.+.....++++++++..+...+...+... ....+..+.|.++++. |. ++.+.++.......+.+++..+.+++.
T Consensus 204 ~~~~~~~~~~ll~~~~~~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~-s~~~~gl~~~~~~~~~~i~~~l~~~~~ 278 (413)
T PRK15403 204 AKSVLRDFRNVFRNRLFLTGAATLSLSYI----PMMSWVAVSPVILIDAGGM-TTSQFAWTQVPVFGAVIVANAIVARFV 278 (413)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHhChHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011234566777666554443333222 2234445667777665 66 888888888888888888888887776
Q ss_pred hhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHH
Q 011657 335 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN 414 (480)
Q Consensus 335 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 414 (480)
++..+++.......+..++..++........+..+..+...+++..+.+... |......-.. ....+|++.++.+...
T Consensus 279 ~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~~-~~~~~G~a~a~~~~~~ 356 (413)
T PRK15403 279 KDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIF-PTLFRFTLFS-NNLPKGTVSASLNMVI 356 (413)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHh-HHHHHHHhcc-CCCCCcHHHHHHHHHH
Confidence 5544444432222233333322221110112222222333333333333322 3332212111 1224799999999999
Q ss_pred HHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHh
Q 011657 415 FGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 415 ~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
..+..+++...+++.+. +....+...++++.+....
T Consensus 357 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~ 392 (413)
T PRK15403 357 LMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVF 392 (413)
T ss_pred HHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence 99999999998887775 5566666665555444333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=224.90 Aligned_cols=335 Identities=16% Similarity=0.108 Sum_probs=225.4
Q ss_pred hHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 011657 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (480)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 132 (480)
.+..+.+.+++.+++....++..|.++++ +|+++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~ 99 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 33444555677788888899999999877 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhh-
Q 011657 133 LYLVGALVT---ALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVD- 174 (480)
Q Consensus 133 ~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~- 174 (480)
+++++++++ .++++++.++++|+++|+|.|. +|+.+|+.+..
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~ 179 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999885 5689999999999999999887 34444433220
Q ss_pred h----------------h--------hhhHHHHhchhHHHH-HHHHH-HhcccCchHHHHHhcccccCchhhhHHHHHHH
Q 011657 175 L----------------V--------AGWRYMYGASTPLAV-IMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISC 228 (480)
Q Consensus 175 ~----------------~--------~~wr~~f~~~~~~~~-~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 228 (480)
. . .+||++|+....+.. +..+. ...+||.+.. +.
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~----------------- 239 (438)
T PRK10133 180 NVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH----------------- 239 (438)
T ss_pred CCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---cc-----------------
Confidence 0 0 256666754333332 32222 2234442110 00
Q ss_pred HHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHH-HH-hcCC
Q 011657 229 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQ-SAGF 306 (480)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~ 306 (480)
. +....+.....+++++++.++...+..++..... .....|.+.+ .+ ..|.
T Consensus 240 ---------------------~--~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~l~~~~~g~ 292 (438)
T PRK10133 240 ---------------------S--DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGM 292 (438)
T ss_pred ---------------------c--cccccchhhhHHHHHhCchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcCCC
Confidence 0 0000011123456777776655443333332222 2233345545 34 4577
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhccc
Q 011657 307 SAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 386 (480)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (480)
++.+++.......++.++++++.+++.||+++|+++..+..+..+.+.+... .... ..+..+.+.+.+ ....
T Consensus 293 -s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~l~glg-~~~i 364 (438)
T PRK10133 293 -TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-----AGGH-VGLIALTLCSAF-MSIQ 364 (438)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-----cCCh-HHHHHHHHHHHH-HHHH
Confidence 8999999999999999999999999999999999888776666554443322 1111 222233333333 3344
Q ss_pred ccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-ccHHHHHHHHHHHHHHHh
Q 011657 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 451 (480)
.|..++...+..|+ +.+.+.++.. ...+|+.++|.+.|.+.|..| .+..|++...+.+.....
T Consensus 365 ~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 365 YPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 56777888888874 4777888886 455788999999999999887 667776655544444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=222.89 Aligned_cols=315 Identities=19% Similarity=0.149 Sum_probs=223.3
Q ss_pred hcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 011657 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 141 (480)
++..+......+.+|.+..+ ++.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 44444556667777777776 88899999999999999999999999999999999999999999999999888
Q ss_pred HhcC-----chHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHH
Q 011657 142 ALAP-----DFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYM 182 (480)
Q Consensus 142 ~~~~-----~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~ 182 (480)
.+++ +++.+++.|+++|++.+. +|+.+++.+.+.. +||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~ 160 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWA 160 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 8877 999999999999998887 5666666666555 99999
Q ss_pred HhchhHHHHHHHHHHhcc--cCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccccc
Q 011657 183 YGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 260 (480)
Q Consensus 183 f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (480)
|++.++..++..+..+.+ ||.++. + +.+ . +++. .++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~---~--------------------~~~~----------~~~~~ 200 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAAS----E---IQA---L--------------------SNAV----------LRDTR 200 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCc----c---ccc---c--------------------chhH----------HHHHH
Confidence 998887766644444333 222110 0 000 0 0000 00011
Q ss_pred ccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011657 261 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 339 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 339 (480)
..++..++++..+...+...+..... ......+.|.+.++ .+. +..+.+.......++.+++.++.+++.||.+|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (365)
T TIGR00900 201 EGIKFVLKNPLLRTLLLLALLFNLVF---APAIVALFPYVQSKYLGR-GSTHYGWVLAAFGLGALLGALLLGLLGRYFKR 276 (365)
T ss_pred hHHHHHHcCcHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 23455666665554444333332221 11223566777765 577 78889999999999999999999999999999
Q ss_pred chHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHH
Q 011657 340 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 419 (480)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 419 (480)
|+.+..+..+.+++...+... .++.+...+..++. +.......+...++..|..|++.|+++.|+.+...+++..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 351 (365)
T TIGR00900 277 MALMTGAIFVIGLAILVVGLT----PPNFPLFLVLWFAI-GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP 351 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 998887766666665554431 11122223333333 3333334456668899999999999999999999999999
Q ss_pred hHhhcchhhHHhhC
Q 011657 420 LVTFAFSPLKDLLG 433 (480)
Q Consensus 420 i~~~~~~~~~~~~g 433 (480)
++|.+.|.+.|..|
T Consensus 352 ~g~~~~g~l~~~~g 365 (365)
T TIGR00900 352 LGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998754
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=221.93 Aligned_cols=310 Identities=17% Similarity=0.175 Sum_probs=215.6
Q ss_pred hcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 011657 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 141 (480)
+..........+..|.+.++ +|.++.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 87 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL 87 (385)
T ss_pred HHHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 34455667788889999888 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchh
Q 011657 142 ALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGAST 187 (480)
Q Consensus 142 ~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~ 187 (480)
+++++++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.+
T Consensus 88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~ 166 (385)
T TIGR00710 88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLS 166 (385)
T ss_pred HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 9999999999999999998876 4555555555554 9999999988
Q ss_pred HHHHHHH-HHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHH
Q 011657 188 PLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266 (480)
Q Consensus 188 ~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (480)
+..++.. +..+..||+++.. + + . + .++.....++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~---~---~------------------------~-~-------------~~~~~~~~~~~ 202 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPYE---A---R------------------------I-Q-------------ISTYFETFLLL 202 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCCc---c---c------------------------C-C-------------HHHHHHHHHHH
Confidence 8777644 3444566653200 0 0 0 0 00001123455
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHh
Q 011657 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLG 345 (480)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 345 (480)
++++..+...+....... .......+.|.+++ +.|. ++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 277 (385)
T TIGR00710 203 LKSKMFWGYALIYGASFG----GFFAFFSGAPFVYIDIMGV-SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM 277 (385)
T ss_pred HcCchhHHHHHHHHHHHH----HHHHHHHcChHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 566555444333222222 12234445566655 5677 88889999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc
Q 011657 346 GVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF 425 (480)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~ 425 (480)
+..+..++..++...... ....+........+.+.......+.......|..| +.++++.++.+.....++.+.+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~ 355 (385)
T TIGR00710 278 GLILFAVSAVLLEITAIL-GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV 355 (385)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666555432111 11222222222222222222233455567778777 6799999999999877666666666
Q ss_pred hhhHH
Q 011657 426 SPLKD 430 (480)
Q Consensus 426 ~~~~~ 430 (480)
+.+.+
T Consensus 356 ~~~~~ 360 (385)
T TIGR00710 356 SLIHG 360 (385)
T ss_pred Hhccc
Confidence 64443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-26 Score=212.37 Aligned_cols=330 Identities=21% Similarity=0.219 Sum_probs=233.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHhH--
Q 011657 88 WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGL-- 163 (480)
Q Consensus 88 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~-- 163 (480)
+++.+..+.+++.+.++.|+.+++++.|+++||||-|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 4899999999999999999999999999999999999999999999999999998874 456889999999999997
Q ss_pred --------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHh-cccCchHHHHHh
Q 011657 164 --------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPASPRWLLLC 210 (480)
Q Consensus 164 --------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~ 210 (480)
++..+++++.+...||++.|++.++.+++..++++ +..|+|...
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h--- 223 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH--- 223 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC---
Confidence 44445566666645999999999999999666554 456666410
Q ss_pred cccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccc--ccccHHHHhhhhhhhHHHHHHHHHHHHHhh
Q 011657 211 AMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED--KEVSLREVFHGKCLKALIIGAGLVLFQQIT 288 (480)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (480)
....+.|.+.+.+....++.+ .+.+++++++++..|..++..+. ...
T Consensus 224 ---------------------------~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~----~~~ 272 (466)
T KOG2532|consen 224 ---------------------------PNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFG----GNW 272 (466)
T ss_pred ---------------------------CCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHH----HHH
Confidence 000111122222221111111 46789999999877766654433 333
Q ss_pred ChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc--------h-HHHhhhHHHHHHHHHHHH
Q 011657 289 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR--------P-LLLGGVSGIVISLFLLGS 359 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~~~~ 359 (480)
++..+..|.|.|+++.-..+..+.|+..++..+...+..+++|.++||+.+| + .-.++....++.++.+++
T Consensus 273 ~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~ 352 (466)
T KOG2532|consen 273 GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF 352 (466)
T ss_pred HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee
Confidence 4557888999999875333999999999999999999999999999998653 1 122333333333333332
Q ss_pred HhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH---hhCccH
Q 011657 360 YYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD---LLGAGI 436 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~---~~g~~~ 436 (480)
....+.+..++++.+..+..+.... -.+.-..+..| ++.+..+|+.+.+..+.++++|.+.+.+.. ...|+.
T Consensus 353 ---~~~~~~~~a~~~l~~~~~~~g~~~~-Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 353 ---TSDEHRLLAVILLTIAIGLSGFNIS-GFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred ---cCCCcchHHHHHHHHHHHHcccchh-hhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 1222333333333333333222221 11122223345 889999999999999999999999999994 346889
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 011657 437 LFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~ 456 (480)
+|++.+++.+++.++..++-
T Consensus 428 VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHhchheeEee
Confidence 99999999988887665543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=215.35 Aligned_cols=336 Identities=17% Similarity=0.198 Sum_probs=222.4
Q ss_pred cchhhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011657 45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR 124 (480)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 124 (480)
.+++.....+.++++...+...|...+..+.+.+++. ||+++...|++.+.+.+.+.+.+|+.|+++|||.||
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~ 98 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK 98 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3344445555677888899999999999999998877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhh
Q 011657 125 RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGS 170 (480)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~ 170 (480)
+++.+|..+|.++.++++++..||+++++|.+.|+|.+. +|++.|.
T Consensus 99 ~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 99 RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 999999999999999999999999999999999999998 5666666
Q ss_pred hhhhhhhhhHHHHhchhHHHHHH-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 011657 171 LLVDLVAGWRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL 249 (480)
Q Consensus 171 ~l~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (480)
.+......|||.|+..+++++++ ++..++.+|++|-...+. .+.+
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~---------------------~~~~------------- 224 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV---------------------DGEN------------- 224 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc---------------------ccCC-------------
Confidence 66666656999999999999985 455556676643100000 0000
Q ss_pred HhhhcccccccccHHH---HhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHH----HhcCCCCCcchHHHHHHHHHH
Q 011657 250 TELSYVGEDKEVSLRE---VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL----QSAGFSAASDATRVSILLGLF 322 (480)
Q Consensus 250 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~ 322 (480)
...+.....++| +.+++......+......+ ..+.+.+|.|.+. +-.|+ +..+..++..+...+
T Consensus 225 ----~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f----v~Gs~sww~p~~~~~~~~~~~~-~~~~~~ifg~vt~~~ 295 (493)
T KOG1330|consen 225 ----KMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQF----VIGSLSWWAPAFIYYSYELIGF-DHNATLIFGGVTCAG 295 (493)
T ss_pred ----cCCCCccchHHHHHHHHccCceeeehHHHHHHHH----hccccchhhhhHHHHHHHHhCC-ccccchhhhhHHHhh
Confidence 001111222233 3332322222222222222 1223444444433 34555 677788888999999
Q ss_pred HHHHHHHHHHHHhhhcCc----hHHHhhhHHH----HHHHHHHHHHhhccCCchhHHHHHHHHHHHH-Hhccccccccee
Q 011657 323 KLIMTGLAVLVVERLGRR----PLLLGGVSGI----VISLFLLGSYYLFLDDVPAVAVVALLLYVGC-YQLSFGPIGWLM 393 (480)
Q Consensus 323 ~~~~~~~~g~l~d~~g~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 393 (480)
+.+|.+++|.++||+.|+ ....+.-..+ ..+...+.+ +...........+.+++++.. ...... ...-+
T Consensus 296 G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~-~~~~~~~s~~~~~il~~~g~~~~~~~~a-~n~~i 373 (493)
T KOG1330|consen 296 GSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL-FPAFTSSSMIFGLILFLVGETISWFNWA-TNNPI 373 (493)
T ss_pred chhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhcccc-cccce
Confidence 999999999999995321 1111111111 111111111 111223333333333333322 233333 33367
Q ss_pred ecccCChhhhhhHHHHHHHHHH-HHHHhHhhcchhhHHhh
Q 011657 394 ISEVFPLRLRGRGLSVAVLVNF-GANALVTFAFSPLKDLL 432 (480)
Q Consensus 394 ~~~~~p~~~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~~ 432 (480)
..|++|++.|.++.++...+.. +|.+-+|.+.|.+.|+.
T Consensus 374 ~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 374 FLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred eeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 7889999999999999988854 55566666999999863
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=217.45 Aligned_cols=316 Identities=14% Similarity=0.096 Sum_probs=204.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---h-cCchHHHHHHHHHHHHHHhH-
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---L-APDFIIMVVGRFVFGIGIGL- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~g~g~- 163 (480)
+|.+..+.+++.+.+.+++.++++++|+++||+|||+++..+.++++++++++. + .++++.+++.|+++|+|.+.
T Consensus 43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~ 122 (402)
T TIGR00897 43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLF 122 (402)
T ss_pred hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHH
Confidence 899999999999999999999999999999999999999999999999877653 3 35788999999999998765
Q ss_pred -----------------------------h-----HHhhhhhhhhhhhhhHHHHhchhHHHHH-HHHHHhcccCchHHHH
Q 011657 164 -----------------------------G-----GYGIGSLLVDLVAGWRYMYGASTPLAVI-MGMGMWWLPASPRWLL 208 (480)
Q Consensus 164 -----------------------------~-----g~~~g~~l~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~ 208 (480)
+ |+.+++.+.+.. ||+..++.......+ ..+..++.++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 199 (402)
T TIGR00897 123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSNKDIFTP-- 199 (402)
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhccCCCCCc--
Confidence 2 233333333333 655444433333222 22223333432110
Q ss_pred HhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhh
Q 011657 209 LCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQIT 288 (480)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (480)
++. + + +.+ .++....++.+++++..+...+...+ ...
T Consensus 200 ~~~-----------~------------~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 236 (402)
T TIGR00897 200 QHM-----------Q------------T-----REK-----------FSELGKAATILFTNPNVLLGGMVRII----NTI 236 (402)
T ss_pred ccc-----------c------------C-----Ccc-----------hhhHHHHHHHHHcChhHHHHHHHHHH----HHH
Confidence 000 0 0 000 00001124456666655443333222 222
Q ss_pred ChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHH-hhhHHHHHHHHHHHHHhhccCCc
Q 011657 289 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL-GGVSGIVISLFLLGSYYLFLDDV 367 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 367 (480)
.......+.|.+.++.|. +..+.+.......++..++.++.|+++||++||+.+. .+.....++.+.+........++
T Consensus 237 ~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 315 (402)
T TIGR00897 237 GLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS 315 (402)
T ss_pred HHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 334566788888888888 7788888888899999999999999999999888764 22233333322222111111122
Q ss_pred hhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHH
Q 011657 368 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 447 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (480)
.+.......+.+.+.. ...+.. ....|..| ++|+++.|+.+....+++.++|.+.|.+.+..|+...+++.+++.++
T Consensus 316 ~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i 392 (402)
T TIGR00897 316 FAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV 392 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 2222233333332222 233433 45566655 68999999999999999999999999999999999999998888777
Q ss_pred HHHhcCC
Q 011657 448 SLAFIFX 454 (480)
Q Consensus 448 ~~~~~~~ 454 (480)
+.+...+
T Consensus 393 ~~~~~~~ 399 (402)
T TIGR00897 393 SAFLTAF 399 (402)
T ss_pred HHHHHHH
Confidence 7666544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=217.64 Aligned_cols=333 Identities=11% Similarity=0.072 Sum_probs=225.2
Q ss_pred ccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhcCchHHH
Q 011657 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAPDFIIM 150 (480)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (480)
.+..+.+.++ +|++..|+|++.+.+.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+
T Consensus 23 ~~l~~~l~~~-------~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (418)
T TIGR00889 23 VTLGSYMSKT-------LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM 95 (418)
T ss_pred HHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4445555555 89999999999999999999999999999999965 778888999998999999999999999
Q ss_pred HHHHHHHHHHHhH--------------------------------hHHhhhhhhhh---hhhhhHHHHhchhHHHHHHHH
Q 011657 151 VVGRFVFGIGIGL--------------------------------GGYGIGSLLVD---LVAGWRYMYGASTPLAVIMGM 195 (480)
Q Consensus 151 ~~~r~l~G~g~g~--------------------------------~g~~~g~~l~~---~~~~wr~~f~~~~~~~~~~~~ 195 (480)
++.|++.|++.+. +|..+|+.+.. ...+|+ +|++.++..++..+
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV 174 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence 9999998885432 44444444432 222344 35556665555545
Q ss_pred HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 196 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 196 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
..+++||+|+- ++ +. +... ++..+.+.++++|++.++..
T Consensus 175 ~~~~~~e~~~~---~~---~~-------------------------~~~~----------~~~~~~~~~~~~k~~~~~~~ 213 (418)
T TIGR00889 175 FALTLPDIPVA---KS---TA-------------------------KMSI----------KVMLGLDAFILFKNKRMAIF 213 (418)
T ss_pred HHhcCCCCCCC---cc---cc-------------------------ccCH----------HHHhhhhHHHHhcCCCeeeH
Confidence 56677887520 00 00 0000 00001123456666655544
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCC--------cchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhh
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAA--------SDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGV 347 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 347 (480)
++..++..... .....+.+.+.++.|. ++ ...+...+...+..+++.+..+++.||+|+|+++..+.
T Consensus 214 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~ 288 (418)
T TIGR00889 214 FFFSMLLGAPL----QITNIFGNGFLHEFGR-NPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSL 288 (418)
T ss_pred HHHHHHHHhHH----HHHHHhHHHHHHHhcc-cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 44333322211 2233455666666665 33 55688889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhccCCc-hhHHHH-HHHHHHHHHhcccccccceeecccCChhhhhhHHHHHH-HHHHHHHHhHhhc
Q 011657 348 SGIVISLFLLGSYYLFLDDV-PAVAVV-ALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV-LVNFGANALVTFA 424 (480)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~g~~i~~~~ 424 (480)
++..++..++... .... ....+. ..++.+.+.. ...+....++.|.+|++.|+++.|+.+ ....+|.+++|.+
T Consensus 289 ~~~~v~~~l~~~~---~~~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l 364 (418)
T TIGR00889 289 VAWALRFGFFAYG---DPEYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL 364 (418)
T ss_pred HHHHHHHHHHHHc---CcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8877776555431 1111 122222 2222333222 233454578899999999999999997 5678999999999
Q ss_pred chhhHHhh------CccHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 011657 425 FSPLKDLL------GAGILFYAFGVIAVLSLAFIFXXXXXXXXS 462 (480)
Q Consensus 425 ~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (480)
.|.+.++. ||+..|.+.+++.+++.++.+++.+|++++
T Consensus 365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999984 477888888888777777777767766543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=213.27 Aligned_cols=310 Identities=31% Similarity=0.412 Sum_probs=243.8
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
.++.+...++....++..|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+.+.++.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~ 77 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG 77 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHH
Confidence 344566666777888888888877 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHH
Q 011657 138 ALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMY 183 (480)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f 183 (480)
.+...++++++.+++.|++.|++.+. +|+.+++.+.+.. +||+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~ 156 (352)
T cd06174 78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLF 156 (352)
T ss_pred HHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence 99999999999999999999998876 4555555555444 799999
Q ss_pred hchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccH
Q 011657 184 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 263 (480)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (480)
++.+++.++..+...+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 174 (352)
T cd06174 157 LILAILGLLLALLLLFLL-------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 888877776544443321
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCch-
Q 011657 264 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP- 341 (480)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~- 341 (480)
+..+... +..+...........+.+.+.++. +. +..+.+.......++..++.++.+++.||++||+
T Consensus 175 ------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 243 (352)
T cd06174 175 ------RLLLLLA----LAFFLLSFGYYGLLTYLPLYLQEVLGL-SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL 243 (352)
T ss_pred ------HHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1111222 222222333446666777777776 66 8889999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhH
Q 011657 342 LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALV 421 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~ 421 (480)
.+..+..+..++.+.+... ++.+... ....+.+.......+....+..|..|+++|++..|+.+....++..++
T Consensus 244 ~~~~~~~~~~i~~~~~~~~-----~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (352)
T cd06174 244 LLLIGLLLAALGLLLLALA-----PSLALLL-VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG 317 (352)
T ss_pred HHHHHHHHHHHHHHHHHHh-----ccHHHHH-HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777766541 2233333 333334444444556777999999999999999999999999999999
Q ss_pred hhcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 422 TFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 422 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
+.+.+.+.+..+++..+++.+++.+++.+..+.
T Consensus 318 ~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 318 PLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999988888776544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=218.89 Aligned_cols=330 Identities=21% Similarity=0.252 Sum_probs=211.5
Q ss_pred cccccccccccccccccCCCCCCCccccCChhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 63 LYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSG-----SLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
.+.+|...++...+.+.++.. .+.++.+.+.+.+. ..++..+++++.|+++||+|||+++.++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 78 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFF-----PPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIG 78 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 445566666666666665521 22445555554443 33444578999999999999999999999999999
Q ss_pred HHHHHhcCchH--------HHHHHHHHHHHHHhH------------------------------hHHhhhhhhhh-----
Q 011657 138 ALVTALAPDFI--------IMVVGRFVFGIGIGL------------------------------GGYGIGSLLVD----- 174 (480)
Q Consensus 138 ~~~~~~~~~~~--------~l~~~r~l~G~g~g~------------------------------~g~~~g~~l~~----- 174 (480)
.++++++++++ .+++.|+++|++.+. +|..+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~ 158 (394)
T TIGR00883 79 TLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158 (394)
T ss_pred HHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999975 488899999998775 44444443321
Q ss_pred ------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHH
Q 011657 175 ------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEI 248 (480)
Q Consensus 175 ------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (480)
...+||+.|++.+++.++..+....+||+|++..+++
T Consensus 159 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 201 (394)
T TIGR00883 159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE------------------------------------- 201 (394)
T ss_pred cCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-------------------------------------
Confidence 1248999999887776665555556777764321110
Q ss_pred HHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHH
Q 011657 249 LTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMT 327 (480)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (480)
++++.+.+.++.++++..+ ......... ...........+.|.+. ++.|. +..+.+.......++..++.
T Consensus 202 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 272 (394)
T TIGR00883 202 ------KHKKKRGPIRETLTKHRKP-FLLGLGLVI-ATTTTFYLITTYLPTYLTQTLGL-SANSALLVLMLSLILFFITI 272 (394)
T ss_pred ------ccccccCCHHHHHHhchHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Confidence 0111223455566554311 222222222 22223345556777777 45666 77888889999999999999
Q ss_pred HHHHHHHhhhcCchHHHhhhHHHHHHH-HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhH
Q 011657 328 GLAVLVVERLGRRPLLLGGVSGIVISL-FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRG 406 (480)
Q Consensus 328 ~~~g~l~d~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 406 (480)
++.+++.||+|||+.+.....+..+.. ..+.. .. ...+.+.......+...+.. ...+...+++.|.+|++.|+++
T Consensus 273 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~ 349 (394)
T TIGR00883 273 PLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA-LL-DSGSFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTG 349 (394)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-Hh-cCCchHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeE
Confidence 999999999999987765444333322 22211 11 11222333333333333333 3344556899999999999999
Q ss_pred HHHHH-HHHHHHHHhHhhcchhhHHhhC-ccHHHHHHHHHHH
Q 011657 407 LSVAV-LVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAV 446 (480)
Q Consensus 407 ~~~~~-~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~ 446 (480)
.++.+ ....+|..++|.+.|.+.++.| ++..++....+++
T Consensus 350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 99854 4466788899999999999988 6655555544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=219.23 Aligned_cols=357 Identities=18% Similarity=0.186 Sum_probs=233.5
Q ss_pred CCcccchhhhHHhHHHHhhhhhcccccccccc-cccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011657 41 SPENYSVSAAILPFLFPALGGLLYGYDIGSTS-CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119 (480)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d 119 (480)
..++..++..+.++..+++.++....+...++ +.+..+.+| .+....+.+++.++++++++++++++|.|.|
T Consensus 34 ~~~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~ed-------l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~ 106 (495)
T KOG2533|consen 34 EERKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKED-------LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGD 106 (495)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccc-------cchhhhhhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 34555667777777777888887777755443 344445555 8889999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH------------------------------hHHhhh
Q 011657 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL------------------------------GGYGIG 169 (480)
Q Consensus 120 r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g 169 (480)
|++-.+.+....+++++..++....+|++.+++.|++.|+..+. +|.++|
T Consensus 107 r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~g 186 (495)
T KOG2533|consen 107 RFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFG 186 (495)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHH
Confidence 99999999999999999999998899999999999999999988 788888
Q ss_pred hhhhhh---------hhhhHHHHhchhHHHHHH-HHHHhcccCchH--HHHHhcccccCchhhhHHHHHHHHHHHhCCCC
Q 011657 170 SLLVDL---------VAGWRYMYGASTPLAVIM-GMGMWWLPASPR--WLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237 (480)
Q Consensus 170 ~~l~~~---------~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (480)
++++.. ..||||.|++.++++++. +++++++|+.|. |.. .++|..-..++.+..+.
T Consensus 187 gliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl------------~~~ek~~~~~~~~~~~~ 254 (495)
T KOG2533|consen 187 GLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFL------------TDEEKELVVERLRESPS 254 (495)
T ss_pred HHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcccc------------chHHHHHHHHHHHhccC
Confidence 887754 359999999999999984 566677999886 111 11111111111111111
Q ss_pred CCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHH
Q 011657 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVS 316 (480)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 316 (480)
.. .+++.+...+++.++++..+...+.. ++.....+.+.+|.|.++++ .|+ +..++..+.
T Consensus 255 ~~--------------~~~~~~~~~~~~a~~dp~vw~~~l~~----~~~~lv~~~~~~~lpl~l~~~~~~-s~~~a~~ls 315 (495)
T KOG2533|consen 255 GG--------------IENKFKWKGFKEALKDPGVWPFSLCY----FFLKLVNYGFSYWLPLYLKSNGGY-SELQANLLS 315 (495)
T ss_pred CC--------------cccccCHHHHHHHHhchhHHHHHHHH----HHHhhccccHHHHHHHHHHcCCCc-ChHHhcccc
Confidence 10 00113445667777777666554433 33334456788999999998 346 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----cCchHHHhhhHHHHH-HHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccc
Q 011657 317 ILLGLFKLIMTGLAVLVVERL----GRRPLLLGGVSGIVI-SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGW 391 (480)
Q Consensus 317 ~~~~~~~~~~~~~~g~l~d~~----g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
++..++++++.+++|+++||+ .+|........+..+ +.+.+.. ........... +..........+...
T Consensus 316 ~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~ 389 (495)
T KOG2533|consen 316 TPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA-----AAVLPGAYGAF-LIGPYGLIATAIIAL 389 (495)
T ss_pred chHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hccchHHhHHH-HhcchhhHHHHHHHH
Confidence 999999999999999999994 445444443333322 2222221 11122221111 111111111223444
Q ss_pred eeecccCChh-hhhhHHHHHHHHHHHHHHhHhhcchh-hHHhhCccHHHHHH
Q 011657 392 LMISEVFPLR-LRGRGLSVAVLVNFGANALVTFAFSP-LKDLLGAGILFYAF 441 (480)
Q Consensus 392 ~~~~~~~p~~-~~~~~~~~~~~~~~~g~~i~~~~~~~-~~~~~g~~~~~~~~ 441 (480)
..+++....+ .+-+..+......+.+++++|.+.-. ....+++...|...
T Consensus 390 ~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 390 SWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred hhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 5555555444 44444455555566666666655433 33345666676433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-26 Score=201.01 Aligned_cols=329 Identities=20% Similarity=0.213 Sum_probs=246.7
Q ss_pred cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchH
Q 011657 69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148 (480)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 148 (480)
...+++.+.+.+| +|+|+.|.+++.+...+...+..++.|.+.||||.|++..++.++..+-++..+++.+++
T Consensus 31 ~l~s~l~~~i~~~-------~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~ 103 (417)
T COG2223 31 TLFSPLGVFIKSD-------FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP 103 (417)
T ss_pred HHHHHHHhhhccc-------cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3566777777776 999999999999999999999999999999999999999999999999999999986554
Q ss_pred ---HHHHHHHHHHHHHhH----------------------------hHHhhhh----hhhhhhhh---hHHHHhchhHHH
Q 011657 149 ---IMVVGRFVFGIGIGL----------------------------GGYGIGS----LLVDLVAG---WRYMYGASTPLA 190 (480)
Q Consensus 149 ---~l~~~r~l~G~g~g~----------------------------~g~~~g~----~l~~~~~~---wr~~f~~~~~~~ 190 (480)
++++.+++.|++.+. +|..+.. .+.... + ||....+..+..
T Consensus 104 ~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~l 182 (417)
T COG2223 104 STWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVAL 182 (417)
T ss_pred chHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 999999999998877 3333333 333333 5 999999888888
Q ss_pred HH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhh
Q 011657 191 VI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 269 (480)
Q Consensus 191 ~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (480)
++ .++.++.+.|.|...... ++......+.++++
T Consensus 183 ~v~~v~~~~~~~d~p~~r~~~---------------------------------------------~~~~~~~~~~v~~~ 217 (417)
T COG2223 183 AIAAVLAWLGMNDVPEHRASV---------------------------------------------KPQLPAQLKAVFSN 217 (417)
T ss_pred HHHHHHHHHHhCCChhhhccc---------------------------------------------cccchhHHHHHhcC
Confidence 87 455555666666421000 00111346667777
Q ss_pred hhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhH
Q 011657 270 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVS 348 (480)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 348 (480)
++.|.+.+.. +..+.++..++.+.|.++++ ++. +..+++.......+.+.+.++++|+++||+|.+|++...+.
T Consensus 218 ~~~W~lsllY----~~tFG~Fvgfs~~l~~~~~~~fg~-~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~ 292 (417)
T COG2223 218 KDTWLLSLLY----FATFGGFVGFSAYLPMYLVTQFGL-SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFV 292 (417)
T ss_pred cchHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHH
Confidence 7666654433 33444556777888888765 555 88999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcch
Q 011657 349 GIVISLFLLGSYYLFLD--DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFS 426 (480)
Q Consensus 349 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~ 426 (480)
.++++..++........ .+....+..+.....+.+.+. ...+.++...+| ++.|...|+...++.+|++.-|...+
T Consensus 293 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g 370 (417)
T COG2223 293 GMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFG 370 (417)
T ss_pred HHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCc-chheeechHHHH-hhhhHHHHHHHHhccccccchhHHHH
Confidence 88888777665321111 122233333333334444443 455688888988 57899999999999999999999999
Q ss_pred hhHHhhC-ccHHHHHHHHHHHHHHHhcCCCCC
Q 011657 427 PLKDLLG-AGILFYAFGVIAVLSLAFIFXXXX 457 (480)
Q Consensus 427 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 457 (480)
...+..| +...|+++..+.+++.+..+....
T Consensus 371 ~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 371 VSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 677888888888888887665443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=212.88 Aligned_cols=327 Identities=14% Similarity=0.099 Sum_probs=224.9
Q ss_pred HHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
..+++..+..|+.....++.+|.++++ +|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~ 78 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 344566678888888899999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh---cCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhh--
Q 011657 135 LVGALVTAL---APDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDL-- 175 (480)
Q Consensus 135 ~~~~~~~~~---~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~-- 175 (480)
+++.+++.. .++++.+++.|++.|+|.|. +|+.+++.+...
T Consensus 79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~ 158 (410)
T TIGR00885 79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNL 158 (410)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999988644 46899999999999999887 455554444211
Q ss_pred -----------------------hhhhHHHHhchhHHHHHHHHHHhc--ccCchHHHHHhcccccCchhhhHHHHHHHHH
Q 011657 176 -----------------------VAGWRYMYGASTPLAVIMGMGMWW--LPASPRWLLLCAMKRKGDMQDLRESAISCLC 230 (480)
Q Consensus 176 -----------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (480)
..+||++|++.+++.++..+...+ .||.++ + +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~-----------~------- 215 (410)
T TIGR00885 159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S-----------D------- 215 (410)
T ss_pred ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c-----------c-------
Confidence 136999999888877765444333 333210 0 0
Q ss_pred HHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCC-CCC
Q 011657 231 RLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGF-SAA 309 (480)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 309 (480)
.++.+.....+++++++..+...+..+++..... ....+.+.+.++.+. .+.
T Consensus 216 -----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~~~~~ 268 (410)
T TIGR00885 216 -----------------------AKQISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIPGMTA 268 (410)
T ss_pred -----------------------cccccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCCH
Confidence 0000111234466676666554444444443332 334566666665432 133
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccc
Q 011657 310 SDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPI 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
..+.........+..+|+++++++.||+++|+.+.+...+..+.+++... . ........+.+.+.+.+..+ |.
T Consensus 269 ~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-----~-~~~~~~~~l~~~glf~s~~f-p~ 341 (410)
T TIGR00885 269 GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-----A-GGHVGLYCLTLCSAFMSLMF-PT 341 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-----c-CChHHHHHHHHHHHHHHHHH-HH
Confidence 33455566666788999999999999999999887777666665555443 1 22233444444444444444 77
Q ss_pred cceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh------CccHHHHHHHHHHHH
Q 011657 390 GWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL------GAGILFYAFGVIAVL 447 (480)
Q Consensus 390 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~------g~~~~~~~~~~~~~~ 447 (480)
.++...+..+++.+..+.++...+ +|+++.|.+.|.+.|.. +.+..|++...+.+.
T Consensus 342 i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 342 IYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 778999999876654455555544 99999999999999954 366666664444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=214.43 Aligned_cols=310 Identities=18% Similarity=0.230 Sum_probs=204.8
Q ss_pred cccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCc
Q 011657 67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD 146 (480)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 146 (480)
......+.+|.+.++ +|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++
T Consensus 18 ~~~~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~ 90 (392)
T PRK10473 18 GIDMYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET 90 (392)
T ss_pred HHHHHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence 334455778888887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHH
Q 011657 147 FIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVI 192 (480)
Q Consensus 147 ~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~ 192 (480)
++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.++.+++
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i 169 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGIL 169 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHH
Confidence 99999999999998876 4455555544444 899999999888776
Q ss_pred H-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhh
Q 011657 193 M-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC 271 (480)
Q Consensus 193 ~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (480)
. .+..+++||+++.. + .+ +.......++.++++.
T Consensus 170 ~~~~~~~~~~~~~~~~---~----~~--------------------------------------~~~~~~~~~~~~~~~~ 204 (392)
T PRK10473 170 VLLLSLFILKETRPAR---A----PA--------------------------------------ASSKPRENSESLLNRF 204 (392)
T ss_pred HHHHHHHHcCCCCCcc---c----CC--------------------------------------ccchHHHHHHHHhCHH
Confidence 4 44455567653100 0 00 0000111234445544
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHH
Q 011657 272 LKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGI 350 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 350 (480)
.+...+...+..... ..+..+.|.++ ++.|. +..+.+.......++.+++.++.+++.||+|+|+.+..+..+.
T Consensus 205 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~ 279 (392)
T PRK10473 205 FLSRLVITTLSVTVI----LTFVNTSPVLLMEQMGF-SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF 279 (392)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333332222221111 12333445444 45677 7778888889999999999999999999999999988888777
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH
Q 011657 351 VISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 430 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 430 (480)
.++.+.+... ...........+...+...+.. . ....+..|.+.|+ |.......++..+++.+.+.+.+
T Consensus 280 ~~~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 280 LAAGITLALS-----PSHAVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666655432 1222222222222222222221 1 2334444544443 44445556677777778888888
Q ss_pred hhCccHHHHHHHHHH
Q 011657 431 LLGAGILFYAFGVIA 445 (480)
Q Consensus 431 ~~g~~~~~~~~~~~~ 445 (480)
..|+.....+.+.+.
T Consensus 349 ~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 349 VLGISAWNMLIGILI 363 (392)
T ss_pred HhccchhHHHHHHHH
Confidence 888765444444433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=210.93 Aligned_cols=328 Identities=15% Similarity=0.087 Sum_probs=230.4
Q ss_pred hhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHH
Q 011657 59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL----ILAALLY 134 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~ 134 (480)
+.++.+........|.+|.+.++ +|.+..++|++.+.+.+...++++++|+++||+|||+.. ..+..+.
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34455555567788888898887 899999999999999999999999999999999985433 2332222
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhH--------------------------------hHHhhhhhhhhhhhhhHHH
Q 011657 135 LVGALVTALAPDFIIMVVGRFVFGIGIGL--------------------------------GGYGIGSLLVDLVAGWRYM 182 (480)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~--------------------------------~g~~~g~~l~~~~~~wr~~ 182 (480)
.+ ..+..+++++.+++.|+++|.+.+. +|+.+++.+.+.. |||..
T Consensus 84 ~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~ 160 (382)
T TIGR00902 84 AA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNI 160 (382)
T ss_pred HH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHH
Confidence 22 3445788999999999999887654 5666666666665 99999
Q ss_pred HhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccccccc
Q 011657 183 YGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVS 262 (480)
Q Consensus 183 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (480)
|++.++..++..+. +.++|+++. ++ + ++ .++.+...+
T Consensus 161 f~~~~~~~~~~~~~-~~~~~~~~~---~~---------~--------------------~~----------~~~~~~~~~ 197 (382)
T TIGR00902 161 LAILTAGLAFMLIG-FLIKPTIPP---KD---------A--------------------IP----------EDESQGDSA 197 (382)
T ss_pred HHHHHHHHHHHHHH-HHcCCCCCC---Cc---------c--------------------cc----------ccccccchh
Confidence 98876553333333 333333110 00 0 00 000111224
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 263 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
.++++|++.++...+...+.... ......+.|.++++.|. +..+.+.......++.+++.++.+++.||+|+|+.
T Consensus 198 ~~~~l~~~~~~~~l~~~~l~~~~----~~~~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~ 272 (382)
T TIGR00902 198 FIALLKNPMNLRFLAAVCLIQGA----HAAYYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL 272 (382)
T ss_pred HHHHHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence 56778877666655444433332 23445567777888888 88899999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHH-HHHHHHHhH
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVL-VNFGANALV 421 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~g~~i~ 421 (480)
+.++.++..+...++.. .++.+..+....+.+..++.. .+....++.+. |++.++++.++++. ...+|..++
T Consensus 273 l~~~~~~~~~~~~~~~~-----~~~~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g 345 (382)
T TIGR00902 273 LLISAIACVGRWAIIGA-----IEAFPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIF 345 (382)
T ss_pred HHHHHHHHHHHHHHHHh-----HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888776653 233344444444444444443 34455788887 98999999999875 467899999
Q ss_pred hhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 422 TFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 422 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
+.+.|.+.|+.|+ ..|++.+++.+++.++.
T Consensus 346 ~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 346 TAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 9999999999986 67888788777665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=210.50 Aligned_cols=303 Identities=16% Similarity=0.132 Sum_probs=204.8
Q ss_pred ccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcC
Q 011657 66 YDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP 145 (480)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 145 (480)
+......+.+|.+.++ +|.++.+.+++.+.+.+++.++++++|+++||+|||+++.++.++..++.+++.+++
T Consensus 22 ~~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 94 (394)
T PRK11652 22 MAQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH 94 (394)
T ss_pred HHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 3555667788888877 999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHH
Q 011657 146 DFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAV 191 (480)
Q Consensus 146 ~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~ 191 (480)
+++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.++..+
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~ 173 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGA 173 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHH
Confidence 999999999999998765 4555555555544 89999999888776
Q ss_pred HH-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhh
Q 011657 192 IM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK 270 (480)
Q Consensus 192 ~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (480)
+. .+..+++||+++... + +++.+..+++.++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~--------------~--------------------------------~~~~~~~~~~~~~~~ 207 (394)
T PRK11652 174 GVTFSMARWMPETRPADA--------------R--------------------------------RTRVLASYRTLLSNR 207 (394)
T ss_pred HHHHHHHHhCCccCcccc--------------c--------------------------------hhHHHHHHHHHHcCh
Confidence 64 344556777642100 0 000112344556655
Q ss_pred hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHH
Q 011657 271 CLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSG 349 (480)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 349 (480)
..+...+....... ....+..+.+.++++ .|. +..+.++......++.+++..+.+++.||.+++... ....
T Consensus 208 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~ 280 (394)
T PRK11652 208 RFNCYLLMLIGTLA----GIAVFEACSGVLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVIC 280 (394)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhChHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 55443332222211 122333344555555 677 777888888888888888999999999998833222 2222
Q ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH
Q 011657 350 IVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 429 (480)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 429 (480)
..++.+.+.........+.+.......+...+.+. ..|...++..|.+| ++++++.++.+....+|+.+++.+.+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 281 CLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22222222111111112223333333333333333 34555577788887 67899999999999999999999888776
Q ss_pred Hh
Q 011657 430 DL 431 (480)
Q Consensus 430 ~~ 431 (480)
+.
T Consensus 359 ~~ 360 (394)
T PRK11652 359 QT 360 (394)
T ss_pred CC
Confidence 54
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=216.61 Aligned_cols=310 Identities=25% Similarity=0.354 Sum_probs=215.4
Q ss_pred hhhcccccccccccccc-cccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011657 60 GGLLYGYDIGSTSCATI-SIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA 138 (480)
Q Consensus 60 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 138 (480)
+.++..++.....+.+| .+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 76 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS 76 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH
Confidence 34555556667888888 77777 99999999999999999999999999999999999999999999999997
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHh
Q 011657 139 LVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYG 184 (480)
Q Consensus 139 ~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~ 184 (480)
++..+++|++.+++.|+++|++.+. +|+.+++.+.+.. +||+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~ 155 (352)
T PF07690_consen 77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFL 155 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHH
T ss_pred HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-ccccccc
Confidence 7777778888999999999999877 5666666666444 8999999
Q ss_pred chhHHHHHHHHH-HhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc-c
Q 011657 185 ASTPLAVIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV-S 262 (480)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 262 (480)
+.+++.++..++ .++++++|+....+. +. +.+ .+.+++.. .
T Consensus 156 ~~~~~~~~~~il~~~~~~~~~~~~~~~~-----~~-----------------------~~~---------~~~~~~~~~~ 198 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLPEPPPPRERES-----PK-----------------------ESE---------SKKPKPLKPG 198 (352)
T ss_dssp HHHHHHHHHHHHHHCCC---STTTT--S-----ST-----------------------TTT-----------HHHCCCH-
T ss_pred cccchhhhhhhhHhhhhhhccccccccc-----cc-----------------------ccc---------cccccccccc
Confidence 999998886553 344554432100000 00 000 00011111 2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHH-HHhcCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 011657 263 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSAGFSA-ASDATRVSILLGLFKLIMTGLAVLVVERLGRR 340 (480)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 340 (480)
++.+.+++..+..+.......+ .......+.|.+ .+..|. + ..+.+.......+.++++.++.+++.||+++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFF----VFSGFSFFLPLYLQEVLGF-SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR 273 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHCCHHHHC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccccchhhhhhhhhhHHHH----HHHHhhcccchhhhhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 5566666655422222222222 223466677776 566677 6 57888889999999999999999999999998
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHh
Q 011657 341 PLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 420 (480)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i 420 (480)
+..........+..+.+..... .++..+.+....+.+. ......+....+..|.+|+++++++.|+.+...++++.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 350 (352)
T PF07690_consen 274 RRLLIAILLLILGALGLLLLPF--SSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII 350 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHH--HCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666665555554432111 1223333333333333 333345666789999999999999999999999999998
Q ss_pred Hh
Q 011657 421 VT 422 (480)
Q Consensus 421 ~~ 422 (480)
+|
T Consensus 351 gP 352 (352)
T PF07690_consen 351 GP 352 (352)
T ss_dssp HH
T ss_pred CC
Confidence 87
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=217.28 Aligned_cols=319 Identities=15% Similarity=0.063 Sum_probs=197.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---hcC-----chHHHHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LAP-----DFIIMVVGRFVFGIG 160 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~g 160 (480)
+|.+..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++..... .++ .....++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999887666554433211 111 111122233333322
Q ss_pred HhH--------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhccc-CchHHH
Q 011657 161 IGL--------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP-ASPRWL 207 (480)
Q Consensus 161 ~g~--------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~ 207 (480)
... +|+.+++.+.+ .+|++.|++.++++++..+..++++ |.++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (420)
T PRK09528 121 FLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN--INPQINFWLGSGSALILLVLLFFAKPDAPSTA 198 (420)
T ss_pred hccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh--cCchHhHHHHHHHHHHHHHHHhcccccccchh
Confidence 111 55566565543 2899999998888777555555443 332100
Q ss_pred HHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHh
Q 011657 208 LLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQI 287 (480)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (480)
..+ ++. . +.+++......++.+|++..+...+.........
T Consensus 199 ~~~------------~~~------------------------~--~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~- 239 (420)
T PRK09528 199 KVA------------NAL------------------------G--ANASAVSLKDALALLKLPKFWFLVLYVIGVACFY- 239 (420)
T ss_pred hhc------------cch------------------------h--cccccccHHHHHHHccCCCeEeehHHHHHHHHHH-
Confidence 000 000 0 0000011122345666665544333222221111
Q ss_pred hChhHHHHhHHHHHH----hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhc
Q 011657 288 TGQPSVLYYAASILQ----SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF 363 (480)
Q Consensus 288 ~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
.....+.|.++. +.+. +..+.+...+...++..++.++.|++.||+|+|+.+..+..+..++.+++.+
T Consensus 240 ---~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~---- 311 (420)
T PRK09528 240 ---DVFDQQFPNFFASFFATPEQ-GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF---- 311 (420)
T ss_pred ---HHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh----
Confidence 112222333332 2344 4566788888888999999999999999999999988888777776666543
Q ss_pred cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHH-HHHHHHHHHHhHhhcchhhHHhhCccHHHHHHH
Q 011657 364 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV-AVLVNFGANALVTFAFSPLKDLLGAGILFYAFG 442 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~ 442 (480)
..+.+..+....+...... ...+....++.|.+|++.+++..+. .++...+|.++++.+.|.+.|..|++..|.+.+
T Consensus 312 -~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~ 389 (420)
T PRK09528 312 -ATGPLEVSILKLLHAFEVP-FLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILG 389 (420)
T ss_pred -cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 2333433332222222222 2223344677888999999888766 677788999999999999999999999999888
Q ss_pred HHHHHHHHhcCCCCCC
Q 011657 443 VIAVLSLAFIFXXXXX 458 (480)
Q Consensus 443 ~~~~~~~~~~~~~~~~ 458 (480)
++.++..++.+...++
T Consensus 390 ~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 390 GIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8877766665554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=216.87 Aligned_cols=337 Identities=14% Similarity=0.072 Sum_probs=220.8
Q ss_pred hcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHH-HHHHHHHHH
Q 011657 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRE-LILAALLYL 135 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~ 135 (480)
+..+......++.+|...++ .|.+..+++.+ +.....+ ++.+++|+++||+ |||+. +..+.+..+
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 45566666778888888777 78899999986 4444444 6899999999999 99885 667888787
Q ss_pred HHHHHHHhc---CchHHHHHHHHHHHHHHhH------------------------------hHHhhhh----hhhhhhhh
Q 011657 136 VGALVTALA---PDFIIMVVGRFVFGIGIGL------------------------------GGYGIGS----LLVDLVAG 178 (480)
Q Consensus 136 ~~~~~~~~~---~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g~----~l~~~~~~ 178 (480)
++...+++. ++++.+.+.+++.|++.+. +|..+++ .+.+...|
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 887777775 4688899999999988877 3444443 34342349
Q ss_pred hHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccccc
Q 011657 179 WRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 258 (480)
Q Consensus 179 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (480)
||..|++.+++.++..+..+++||+++.. . + + ... ++.
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~-----~-----~-------------------~~~----------~~~ 210 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATLLAPEPTDTI---P-----V-----P-------------------KTL----------EQA 210 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccc---c-----c-----c-------------------cch----------hhh
Confidence 99999999988777666656678764210 0 0 0 000 000
Q ss_pred ccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 011657 259 KEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVS-ILLGLFKLIMTGLAVLVVERL 337 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~ 337 (480)
...++++.++++..+...+...+..... ........|++.++.|+ +..+.+... ....++.+++.+++|+++||+
T Consensus 211 ~~~~l~~~~~~~~~~~~ll~~~l~~~~~---~~~~~~~~~~l~~~~G~-s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~ 286 (491)
T PRK11010 211 VVAPLRDFFGRNNAWLILLLIVLYKLGD---AFAMSLTTTFLIRGVGF-DAGEVGLVNKTLGLLATIVGALYGGILMQRL 286 (491)
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123455665554444333332222211 11222334444456788 888888887 456689999999999999999
Q ss_pred cCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHH
Q 011657 338 GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGA 417 (480)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g 417 (480)
++|+.+..+.++.++....+..... ...+.+.......+.....+... +..+++..+..+++.+++..|+.+....+|
T Consensus 287 g~~~~l~i~~~l~~l~~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg 364 (491)
T PRK11010 287 SLFRALMIFGILQGVSNAGYWLLSI-TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVG 364 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 9988777655554444433222111 11222222222222111222222 233477788888889999999999999999
Q ss_pred HHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCC
Q 011657 418 NALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 418 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
..+++.+.|.+.|..||...|.+.+++++++.+.....
T Consensus 365 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 365 RVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888877666554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=208.13 Aligned_cols=365 Identities=14% Similarity=0.128 Sum_probs=218.0
Q ss_pred CCcccchhhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011657 41 SPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120 (480)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr 120 (480)
++..+..++.+..+...++......+.....+.+++.+..| +| +.....|+.+.+.++.+++.++.|+++|.
T Consensus 33 p~g~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-------iG-~~~~~~w~~~~~~l~~av~~~~~G~LSDl 104 (599)
T PF06609_consen 33 PDGYYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-------IG-GSDNWSWFSTAWTLASAVSFPFVGRLSDL 104 (599)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-------cC-CCccchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33334444455554445555444444555556777888877 77 45778899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH---------------------------------hHHh
Q 011657 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL---------------------------------GGYG 167 (480)
Q Consensus 121 ~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~---------------------------------~g~~ 167 (480)
||||.+++.+.++..+|+++++.++|...++++..+.|+|.|. .|+.
T Consensus 105 fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ 184 (599)
T PF06609_consen 105 FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPL 184 (599)
T ss_pred hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHH
Confidence 9999999999999999999999999999999999999999887 2223
Q ss_pred hhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHH---------------
Q 011657 168 IGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRL--------------- 232 (480)
Q Consensus 168 ~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 232 (480)
++..+... .+|||.|++.++...+.++..+++..+|++...++++. ...+..+.+..+
T Consensus 185 ia~~~~~~-~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~------s~~~~l~~lD~IG~~L~~~Gl~LfLlg 257 (599)
T PF06609_consen 185 IAQLFAAH-SGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKL------SKREQLKELDWIGIFLFIAGLALFLLG 257 (599)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccC------cHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33222222 48999999999887764333332222233222111000 001111111111
Q ss_pred ---hCC-CCCCCChhhHHHHHHh---------hhc-ccccccccHHHHhhhhh-hhHHHHHHHHHHHHHhhChhHHHHhH
Q 011657 233 ---RGQ-SIGDSAPTEVDEILTE---------LSY-VGEDKEVSLREVFHGKC-LKALIIGAGLVLFQQITGQPSVLYYA 297 (480)
Q Consensus 233 ---~~~-~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (480)
.+. ..+|.+...+...... .+. ...++..-..+++++++ +...++ +.+...+. +.....+-
T Consensus 258 l~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lv---i~fi~G~~-~~s~~~l~ 333 (599)
T PF06609_consen 258 LSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLV---ISFISGMN-FFSVNILW 333 (599)
T ss_pred HhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHH---HHHHHHHH-HHHHHHHH
Confidence 122 2344444333222111 111 11123334456777632 222222 22222111 22333333
Q ss_pred HHHHH-hcCCCCC---cchHHHHHHHHHHHHHHHHHHHHHHhhhcC-chHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 298 ASILQ-SAGFSAA---SDATRVSILLGLFKLIMTGLAVLVVERLGR-RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 298 ~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
|.... -++. +. ...++.....+++..++.++.|.+..|++| |+.++++..++.+++.++... ..++....+
T Consensus 334 p~~~~~vf~~-d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---~~~n~~~~i 409 (599)
T PF06609_consen 334 PQQVVNVFGS-DPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---RPDNKNAAI 409 (599)
T ss_pred HHHHhhhccC-CCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---cCCCcchHH
Confidence 43333 3333 33 356788888999999999999999998886 455566766666555555432 122222222
Q ss_pred HHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 429 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 429 (480)
...++.+.+.+.... .....++-..|++..|++.|+..+++.+|+.++..++..+.
T Consensus 410 ~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 410 AFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222233333332222 33356666789999999999999999999999988875553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=212.72 Aligned_cols=311 Identities=13% Similarity=0.082 Sum_probs=207.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----- 163 (480)
++.+..+.+++.+.+.+++.++++++|+++||+|||++++++.+++++++++++++.+. ++.|+++|++.+.
T Consensus 33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~ 109 (393)
T PRK11195 33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAK 109 (393)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999988887664 7889999999987
Q ss_pred -----------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccc
Q 011657 164 -----------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKR 214 (480)
Q Consensus 164 -----------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 214 (480)
+||.+|+++.+. .|+..+.+.+...++..+..+.+||+|+....+
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~---- 183 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLGARRPGQ---- 183 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccccc----
Confidence 778888877764 477777776665555555556778765310000
Q ss_pred cCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHH
Q 011657 215 KGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVL 294 (480)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (480)
+.+. ....++. ....+.+++++..+..+....+..... ....
T Consensus 184 ~~~~-----------------------~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 225 (393)
T PRK11195 184 SWNP-----------------------IALLRDF-----------FHACRVLWRDKLGRFSLAGTTLFWGAG----ATLR 225 (393)
T ss_pred CCCH-----------------------HHHHHHH-----------HHHHHHHHhCchhHHHHHHHHHHHHHH----HHHH
Confidence 0000 0000000 011345566665544333322222221 1223
Q ss_pred HhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHH
Q 011657 295 YYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVV 373 (480)
Q Consensus 295 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (480)
+..+.+.++ .|. ++.+.+.......++.+++.+..+++.||.++++.+..+.. .++....+.. ..+.+....
T Consensus 226 ~~~~~~~~~~lg~-s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~-----~~~~~~~~~ 298 (393)
T PRK11195 226 FLVLAWAPVALGI-TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL-----QHSLLPAYP 298 (393)
T ss_pred HHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH-----HhHHHHHHH
Confidence 334444443 566 88899999999999999999999999999988887766643 2332222221 122332333
Q ss_pred HHHHHHHHHhcccccccceeecccCChhh-hhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 374 ALLLYVGCYQLSFGPIGWLMISEVFPLRL-RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
...+.+.+.+... +...+...+..|++. +|++.++.+..++++..++..+.+.+ +..|.+..+.+.+...+++..+.
T Consensus 299 ~~~~~G~~~g~~~-~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 299 LLILIGALGGFFV-VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHHHHhhhhhh-hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 3333333333333 334466777766554 79999999999999999999998844 67888888777666666665555
Q ss_pred CCC
Q 011657 453 FXX 455 (480)
Q Consensus 453 ~~~ 455 (480)
+.+
T Consensus 377 ~~~ 379 (393)
T PRK11195 377 LLW 379 (393)
T ss_pred HHH
Confidence 443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=206.13 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=209.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----- 163 (480)
+|.+..+.|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+.
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 120 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR 120 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred -----------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHH-HHHhcccCchHHHHHhccc
Q 011657 164 -----------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMK 213 (480)
Q Consensus 164 -----------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~ 213 (480)
+|+.+++.+. .. +||+.|++.++..++.. +..++.||.+. +
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~-- 191 (400)
T PRK11646 121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPAYKL-----S-- 191 (400)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCcccc-----c--
Confidence 6777777776 33 99999999887776643 33444554210 0
Q ss_pred ccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHH
Q 011657 214 RKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSV 293 (480)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
+ . +++.+..+++.++++.++...+.....+.. ....
T Consensus 192 -------~----------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 227 (400)
T PRK11646 192 -------T----------------V-----------------RTPVREGMTRVLRDKRFVTYVLTLTGYYML----AVQV 227 (400)
T ss_pred -------c----------------c-----------------chhhHHHHHHHHcCchHHHHHHHHHHHHHH----HHHH
Confidence 0 0 000112345566655444332222211111 1123
Q ss_pred HHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh-hhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 294 LYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE-RLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 294 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
..+.|.+.++.+. ++.+.+.......+....+....+++.| |++.++.+..+..+.+++..++.. .++.+...
T Consensus 228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~ 301 (400)
T PRK11646 228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM-----VSNLQQLF 301 (400)
T ss_pred HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-----hhhHHHHH
Confidence 4567888888777 6677888877777776665555566555 466566666666666666555433 12222222
Q ss_pred HHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC----ccHHHHHHHHHHHHH
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG----AGILFYAFGVIAVLS 448 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g----~~~~~~~~~~~~~~~ 448 (480)
....++..+.. ...|...+++.+..|+++||++.|+.+....+|..++|.+.|.+.|+.+ ....+++.+++.+++
T Consensus 302 ~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (400)
T PRK11646 302 TLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLIT 380 (400)
T ss_pred HHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 22222322222 2335555788899999999999999999999999999999999998753 344555555555555
Q ss_pred HHh
Q 011657 449 LAF 451 (480)
Q Consensus 449 ~~~ 451 (480)
.+.
T Consensus 381 ~~~ 383 (400)
T PRK11646 381 LLA 383 (400)
T ss_pred HHH
Confidence 544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=207.61 Aligned_cols=299 Identities=20% Similarity=0.257 Sum_probs=199.3
Q ss_pred ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCch
Q 011657 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF 147 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 147 (480)
.....|.+|.+.++ +|++..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.+++.+++++
T Consensus 7 ~~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 7 IDMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI 79 (377)
T ss_pred HHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 34567888888887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHH
Q 011657 148 IIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIM 193 (480)
Q Consensus 148 ~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~ 193 (480)
+.+++.|+++|++.+. +|+.+++.+.+.. +||+.|++.+++.++.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHH
Confidence 9999999999998876 4555555555544 9999999988887764
Q ss_pred -HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhh
Q 011657 194 -GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL 272 (480)
Q Consensus 194 -~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (480)
.+..+++||+++.. + + . +.+ .++...+.++.++++..
T Consensus 159 ~~~~~~~~~~~~~~~---~---~----------------------~---~~~-----------~~~~~~~~~~~~~~~~~ 196 (377)
T PRK11102 159 AALVFFFIPETLPKE---R---R----------------------Q---PFH-----------LRTTIRNFASLFRHKRV 196 (377)
T ss_pred HHHHHHhCCccCccc---c---c----------------------C---CCC-----------hHHHHHHHHHHHcChHH
Confidence 44455667653200 0 0 0 000 00001123445555543
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHH
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIV 351 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 351 (480)
+...+...+ .+.....+..+.|.++ +..|. ++.+.+.......++.+++.++.+++.||+|+|+.+..+..+..
T Consensus 197 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 271 (377)
T PRK11102 197 LGYMLASGF----SFAGMFSFLTAGPFVYIELNGV-SPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF 271 (377)
T ss_pred HHHHHHHHH----HHHHHHHHHHcCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 333222221 1222223333444444 45677 88899999999999999999999999999999998887776544
Q ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHH-HHHHhHhhc
Q 011657 352 ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNF-GANALVTFA 424 (480)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~g~~i~~~~ 424 (480)
+..+.+..... .....+........+.+.... ..+....+..|..| +.++++.++.+.... ++..+++.+
T Consensus 272 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 272 IMGIWLVVSAL-LDLGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 43322221111 011222222222222222222 22233356677777 789999999887653 555555554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=212.12 Aligned_cols=321 Identities=15% Similarity=0.129 Sum_probs=217.0
Q ss_pred ccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcC
Q 011657 67 DIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP 145 (480)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 145 (480)
......+.+|. +.++ +|.+..++|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.++++
T Consensus 22 g~~~~~~~l~~~l~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 22 GRGATLPFMTIYLSRQ-------YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence 33444454443 4445 899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHH
Q 011657 146 DFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAV 191 (480)
Q Consensus 146 ~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~ 191 (480)
+++.++++|++.|.+.+. +|+.+++.+.. .+||..|++.++..+
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPFWLAAICSA 172 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHHHH
Confidence 999999999888876543 56666666553 389999998887777
Q ss_pred HHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhh
Q 011657 192 IMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK 270 (480)
Q Consensus 192 ~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (480)
+..+ ..+++||+++. + + + ++++..+.++.++++
T Consensus 173 i~~i~~~~~~~~~~~~----~---------~-~--------------------------------~~~~~~~~~~~~~~~ 206 (395)
T PRK10054 173 FPLVFIQIWVQRSEKA----I---------A-T--------------------------------ETGSVWSPSVLLQDK 206 (395)
T ss_pred HHHHHHHHHHhccccc----c---------c-c--------------------------------chhhhhhhhhhccCc
Confidence 6433 34445554210 0 0 0 000001124556666
Q ss_pred hhhHHHHHHHHHHHHHhhChhHHHHhHHHHH---HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhh
Q 011657 271 CLKALIIGAGLVLFQQITGQPSVLYYAASIL---QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGV 347 (480)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 347 (480)
..+...+...+..+... ....+.+.+. ++.+. +....+.......+.........+++.||.++|+.+..++
T Consensus 207 ~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 281 (395)
T PRK10054 207 ALLWFTCSGFLASFVSG----AFASCISQYVMVVADSDF-AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGT 281 (395)
T ss_pred eehHHHHHHHHHHHHHH----HhhhhHHHHHHHhcccch-HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHH
Confidence 55554443333222221 1112333333 23333 4445666777777777777788899999999999888887
Q ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchh
Q 011657 348 SGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSP 427 (480)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 427 (480)
.+..++...+... .++.+...+...++..+ .....|...+++.+..|++.++++.+..+ ...+|..+||.+.|.
T Consensus 282 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~ 355 (395)
T PRK10054 282 LCFVIGLVGFIFS----GNSLLLWGMSAAVFTVG-EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV 355 (395)
T ss_pred HHHHHHHHHHHHc----chHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence 7777666555321 12222223333333333 22334555578889999999999988765 667899999999999
Q ss_pred hHHhhCccHHHHHHHHHHHHHHHhcC
Q 011657 428 LKDLLGAGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (480)
+.|+.|+...+++.+.+..+..++..
T Consensus 356 l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 356 ILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 99999988888887777666666554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=206.24 Aligned_cols=320 Identities=15% Similarity=0.139 Sum_probs=200.6
Q ss_pred ccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHH
Q 011657 65 GYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLY-GALIGSILAFNIADILGRRREL-ILAALLYLVGALVT 141 (480)
Q Consensus 65 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~ 141 (480)
+.......+.+|. +.++ +|.+..++|++.+...+ ++.+++++.++ +||+||||.+ ..+.++.+++..+.
T Consensus 28 ~~~~~~~~p~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~ 99 (393)
T PRK15011 28 GIAGALQTPTLSIFLTDE-------VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF 99 (393)
T ss_pred HHHHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH
Confidence 3344445555555 3445 89999999999876655 66666655666 9999999875 55667777888888
Q ss_pred HhcCchHHHHHHHH-HHHHHHhH-----------------------------------hHHhhhhhhhhhhhhhHHHHhc
Q 011657 142 ALAPDFIIMVVGRF-VFGIGIGL-----------------------------------GGYGIGSLLVDLVAGWRYMYGA 185 (480)
Q Consensus 142 ~~~~~~~~l~~~r~-l~G~g~g~-----------------------------------~g~~~g~~l~~~~~~wr~~f~~ 185 (480)
+++++++.+++.+. +.|.+... +|+.+++.+.+.. |||..|++
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~ 178 (393)
T PRK15011 100 AWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLS 178 (393)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHH
Confidence 89999998766554 44444332 4555555555554 99999999
Q ss_pred hhHHHHHHH-HHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHH
Q 011657 186 STPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR 264 (480)
Q Consensus 186 ~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (480)
.++.+++.. +..+++||.++. ++ ++ +. +.+. .+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~-----------------~~-----------~~~~----~~ 212 (393)
T PRK15011 179 AAVAFIVCGVMVWLFLPSMRKE---LP-----------LA-----------------TG-----------TLEA----PR 212 (393)
T ss_pred HHHHHHHHHHHHHhhcCccCCC---Cc-----------cc-----------------cc-----------cccc----cc
Confidence 988877644 445557776420 00 00 00 0000 00
Q ss_pred HHhhhh-hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 265 EVFHGK-CLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
+++ ..+..+......+ .....+..+.|.+++ +.+. +..+.+.......++.+++.++.|+++||++||+.
T Consensus 213 ---~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~~~-~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~ 284 (393)
T PRK15011 213 ---RNRRDTLLLFVICTLMW----GTNSLYIINMPLFIINELHL-PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL 284 (393)
T ss_pred ---cccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 011 1111111111111 122234456776664 4566 77788888777778888899999999999999988
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
+..+.....+.+..+.. .++.+..+....+.....+.. .+....+..|.+|+ .++++.++.+...++|..++|
T Consensus 285 ~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~ 357 (393)
T PRK15011 285 MRVAAVAGVCFYAGMLM-----AHSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAG 357 (393)
T ss_pred HHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHH
Confidence 77665544443322211 122332222222221222211 12233566888885 599999999999999999999
Q ss_pred hcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 423 FAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.+.|.+.+..|++..+++.+++.+++.+..+.
T Consensus 358 ~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 358 SLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888878777777766554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=202.37 Aligned_cols=299 Identities=19% Similarity=0.156 Sum_probs=205.5
Q ss_pred cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchH
Q 011657 69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148 (480)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 148 (480)
...++.+|.+.++ +|.+..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++
T Consensus 17 ~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred ccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 5678899999988 99999999999999999999999999999999999999999999998888887 789999
Q ss_pred HHHHHHHHHHHHHhH-----------------------------hHH----hhhhhhhhhhh-hhHHHHhchhHHHHHHH
Q 011657 149 IMVVGRFVFGIGIGL-----------------------------GGY----GIGSLLVDLVA-GWRYMYGASTPLAVIMG 194 (480)
Q Consensus 149 ~l~~~r~l~G~g~g~-----------------------------~g~----~~g~~l~~~~~-~wr~~f~~~~~~~~~~~ 194 (480)
.+++.|++.|++.+. +|. .+++.+.+... +||+.|.+.++..++..
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~ 168 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL 168 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999876 233 33333333332 49999887766544332
Q ss_pred HHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhH
Q 011657 195 MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA 274 (480)
Q Consensus 195 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (480)
. .++|+.++. +. . ++...+...++.++++..+.
T Consensus 169 ~--~~~~~~~~~---~~-------------------------~-----------------~~~~~~~~~~~~~~~~~~~~ 201 (355)
T TIGR00896 169 L--AWIPQVRRR---VA-------------------------A-----------------NQTTTRLTPVRIWRSPLAWQ 201 (355)
T ss_pred H--HHhhhhccc---cC-------------------------C-----------------CCCCCCCCCchhhcCHhHHH
Confidence 2 233433110 00 0 00001122345566655544
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-cCchHHHhhhHHHHHH
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVIS 353 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~ 353 (480)
..+...+.. ..+.....+.|.++++.|. +..+.+...+...++.++++++.|++.||+ +||+.+..+..+.+++
T Consensus 202 ~~~~~~~~~----~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 202 VTVFFGLQS----GLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 333222222 2223455678888888888 888999999999999999999999999999 4566666666666666
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecc-cCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 354 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISE-VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
.+.+... ....... ...+++.+ .....+...+...+ ..+++.++...++.+...+++.+++|.+.|.+.|+.
T Consensus 277 ~~~~~~~-----~~~~~~~-~~~l~g~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 277 LCGLLFA-----PMHGLWA-WALVLGLG-QGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHHh-----hhhHHHH-HHHHHHHh-hhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544331 1111111 22222222 22233443344443 345577889999999999999999999999999988
Q ss_pred Cc
Q 011657 433 GA 434 (480)
Q Consensus 433 g~ 434 (480)
|.
T Consensus 350 g~ 351 (355)
T TIGR00896 350 GN 351 (355)
T ss_pred cc
Confidence 73
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=203.70 Aligned_cols=321 Identities=18% Similarity=0.130 Sum_probs=218.5
Q ss_pred cccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHH
Q 011657 65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR----RELILAALLYLVGALV 140 (480)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~ 140 (480)
....+...|.+|.+.+| +|.+..++|++.+++.++..++++++|+++||+||| +.+.++..+. ....
T Consensus 17 ~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 17 FFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 34456778888888877 899999999999999999999999999999999984 3333332222 2233
Q ss_pred HHhcCchHHHHHHHHHHHHHHhH--------------------------------hHHhhhhhhhhhhhhhHHHHhchhH
Q 011657 141 TALAPDFIIMVVGRFVFGIGIGL--------------------------------GGYGIGSLLVDLVAGWRYMYGASTP 188 (480)
Q Consensus 141 ~~~~~~~~~l~~~r~l~G~g~g~--------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~ 188 (480)
...+++++.+++.|++.|++.+. +|+.+++.+.+.. |||..|++.++
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~~~ 166 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWILTA 166 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHH
Confidence 44568999999999999987764 6777777777666 99999988776
Q ss_pred HHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhh
Q 011657 189 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH 268 (480)
Q Consensus 189 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (480)
..++..+..++.||.++. + +.+ +..++...++++++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~----~---------~~~------------------------------~~~~~~~~~~~~i~~ 203 (382)
T PRK11128 167 GVASMLLGQLLRPTIMPQ----G---------ESR------------------------------QQESAGWPAWKALLK 203 (382)
T ss_pred HHHHHHHHHHccCCCCCc----c---------ccc------------------------------cccccccchHHHHHc
Confidence 555444434444543110 0 000 000111235678888
Q ss_pred hhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhH
Q 011657 269 GKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVS 348 (480)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 348 (480)
++..+...+..++..... .....+.+.+.++.|. +..+.+.......++.++..++.+++.||+++|+.+..+..
T Consensus 204 ~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~ 278 (382)
T PRK11128 204 EPTVWRFLLCVSLLQGSH----AAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAI 278 (382)
T ss_pred ChhHHHHHHHHHHHHHHh----HhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 876666554433333221 2334455667778888 77888999888889999999999999999999999888887
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHH-HHHHHHhHhhcchh
Q 011657 349 GIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTFAFSP 427 (480)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~i~~~~~~~ 427 (480)
+.+++.+++.. .++.+..++..++.+...... .+....+..+. +++++++..++.+.. ..+|..++|.+.|.
T Consensus 279 ~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 279 CGVVRWGLMGS-----TTALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred HHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776655432 233444444444443333332 34444666676 556678888988744 56777999999999
Q ss_pred hHHhhCccHHHHHHHHHHHHHHHh
Q 011657 428 LKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
+.|..|. ..++..+++.+++.++
T Consensus 352 l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 352 LYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999886 4666666666655443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=210.48 Aligned_cols=390 Identities=17% Similarity=0.139 Sum_probs=251.3
Q ss_pred CcccchhhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011657 42 PENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL 121 (480)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~ 121 (480)
+..+.|-.....++.. .+.+|... .++...+.++++ |+.+..+++|+.++....+.+.+++.+.+.|||
T Consensus 40 dGG~gWvV~~a~fl~~---~~~~g~~~-~~Gv~~~~~~~~-------f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf 108 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVN---LSTDGLIN-SFGLLFEELMDY-------FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF 108 (509)
T ss_pred CCCeeeeeeHhHHHHH---Hhhhcchh-eehhhHHHHHHH-------hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc
Confidence 5555565444442222 23444443 344677777777 899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHhH-------------------------hHHhhhhhhhh-
Q 011657 122 GRRRELILAALLYLVGALVTALAPDFIIMVVG-RFVFGIGIGL-------------------------GGYGIGSLLVD- 174 (480)
Q Consensus 122 Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~g~g~-------------------------~g~~~g~~l~~- 174 (480)
|.|++.+.|.++..+|.++.+++++++++++. -++.|+|.|. .|..+|..+..
T Consensus 109 g~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~ 188 (509)
T KOG2504|consen 109 GCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPP 188 (509)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHH
Confidence 99999999999999999999999999988885 6888999988 34444443331
Q ss_pred ------hhhhhHHHHhchhHHHHHHHHHHhcccC-chHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCCh--hhH
Q 011657 175 ------LVAGWRYMYGASTPLAVIMGMGMWWLPA-SPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAP--TEV 245 (480)
Q Consensus 175 ------~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 245 (480)
...|||+.+++.+.+.+-.++....+++ ++..... +.++..+.....+.+....++..........+ ...
T Consensus 189 l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (509)
T KOG2504|consen 189 LLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSN 267 (509)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccc
Confidence 2239999999999888765555444433 2211000 00000000000000000000000000000000 000
Q ss_pred HHHHHhhhcccc--cccccH----HHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHH
Q 011657 246 DEILTELSYVGE--DKEVSL----REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILL 319 (480)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 319 (480)
.+..+..+.+.. ..+... .++++++.+. .+.+.......++.....++|.+.++.++ +..++....++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl----~~~~~~~~~~~g~~~p~~~l~~~~~~~g~-~~~~aa~l~Sii 342 (509)
T KOG2504|consen 268 LATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFL----LLALSNLFAYLGFNVPFVYLPSYAKSLGL-SSNDAAFLLSII 342 (509)
T ss_pred hhhhhhCCccccccchhhhhhhhhHHHHcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhHHHHHHH
Confidence 000111111011 111111 4566664333 33334444445566778888999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCch--HHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeeccc
Q 011657 320 GLFKLIMTGLAVLVVERLGRRP--LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV 397 (480)
Q Consensus 320 ~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++..++++++.|++.|+...++ +..++.+..+++...+.. ...+..+...+++.+.....+..+....+.|+
T Consensus 343 gi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~ 416 (509)
T KOG2504|consen 343 GVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDL 416 (509)
T ss_pred HHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987443 344444444444433332 23444455555555554445555555688999
Q ss_pred CChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-ccHHHHHHHHHHHHHHHhcCC
Q 011657 398 FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 398 ~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.+.++-..+.|+...++.++..+||++.|.+.|..| |...|+..+.+.+++.++.++
T Consensus 417 ~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 417 VGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred cChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 888888888887777765444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=204.81 Aligned_cols=328 Identities=15% Similarity=0.078 Sum_probs=210.6
Q ss_pred ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---Hhc
Q 011657 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALA 144 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~ 144 (480)
.....+.+|....++ +|.+..+.+++.+.+.+++.++++++|+++||+|||+.++.+.+..+++.... .+.
T Consensus 18 ~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 91 (396)
T TIGR00882 18 MSAYFPFFPIWLHDV------NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFG 91 (396)
T ss_pred HHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555665544321 79999999999999999999999999999999999999988777665544332 122
Q ss_pred C-----chHHHHHHHHHHHHHHhH--------------------------------hHHhhhhhhhhhhhhhHHHHhchh
Q 011657 145 P-----DFIIMVVGRFVFGIGIGL--------------------------------GGYGIGSLLVDLVAGWRYMYGAST 187 (480)
Q Consensus 145 ~-----~~~~l~~~r~l~G~g~g~--------------------------------~g~~~g~~l~~~~~~wr~~f~~~~ 187 (480)
+ .+..+++.|++.|++.+. +|+.+++.+.+ . +||..|++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~~~ 169 (396)
T TIGR00882 92 PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWLGS 169 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHHHH
Confidence 2 233456678888876654 56666666544 2 8999999998
Q ss_pred HHHHHHHHHHhc-ccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHH
Q 011657 188 PLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 266 (480)
Q Consensus 188 ~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (480)
++.++..+..+. .||+|+.. +..+ ..+ ...++.+..+.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~----~~~------------------~~~~~~~~~~~~~~ 211 (396)
T TIGR00882 170 GFALILMLLLMFAKPKAPSSA----------------TVAN----ALG------------------ANASAFSLKLALEL 211 (396)
T ss_pred HHHHHHHHHHHHhCCCCchhh----------------hhhc----ccc------------------cccCCCCHHHHHHH
Confidence 888775544444 44443200 0000 000 00011112245677
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhc----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 267 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA----GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
++++..+...+....... .+.....+.+.+.++. +. +....+.......+...++.+..+++.||+|+|+.
T Consensus 212 l~~~~~~~~~l~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~-~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~ 286 (396)
T TIGR00882 212 FRQRKFWMFVLYVVGVAC----VYDVFDQQFANFFTSFFATPQQ-GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA 286 (396)
T ss_pred HcCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 777665443332222111 1122323344444443 33 44566788888888899999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHH-HHHHHHHHHHhH
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV-AVLVNFGANALV 421 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~g~~i~ 421 (480)
+.++..+.++...+... ..+.+..+....+...+... .......+..+..|++.++++.+. .+....+|++++
T Consensus 287 l~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~ 360 (396)
T TIGR00882 287 LLIAGTIMSVRIIGSSF-----ATTALEVVILKMLHAFEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFL 360 (396)
T ss_pred HHHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHH
Confidence 88888777776655432 23344333333332222221 112333466777788888887776 677899999999
Q ss_pred hhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 422 TFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 422 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
+.+.|++.|..|+...|.+.+++.++..++.
T Consensus 361 ~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 361 STLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877766554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=200.48 Aligned_cols=306 Identities=16% Similarity=0.142 Sum_probs=198.6
Q ss_pred ccccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 011657 63 LYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141 (480)
Q Consensus 63 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 141 (480)
....+....++..|. ++++ +|++..+.+++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 12 LSFSVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 333345567888885 7777 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcC-chHHHHHHHHHHHHHHhH---------------------------------hHHhhhhhhhhh---------hhh
Q 011657 142 ALAP-DFIIMVVGRFVFGIGIGL---------------------------------GGYGIGSLLVDL---------VAG 178 (480)
Q Consensus 142 ~~~~-~~~~l~~~r~l~G~g~g~---------------------------------~g~~~g~~l~~~---------~~~ 178 (480)
++++ +++.+++.|+++|++.+. +|+.+++.+... ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999 999999999999998665 233333333321 237
Q ss_pred hHHHH-hchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhccc
Q 011657 179 WRYMY-GASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 256 (480)
Q Consensus 179 wr~~f-~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (480)
||+.| +..+++..+ ..+...+.+|+|+... ++... +.... ... .+
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~--------~~~~~-~~~----------~~ 211 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGADTPPGKP--------------ATGKL--------SFKGA-RWS----------VG 211 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcccCCcccc--------------cchhc--------ccccc-ccc----------cc
Confidence 99999 444554444 3444455666653100 00000 00000 000 00
Q ss_pred ccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 011657 257 EDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVE 335 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 335 (480)
++.....++.++++..+...+...+... .......+.|.++++ .|. ++.+++.......+.+++++++.|++.|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 286 (366)
T TIGR00886 212 TGALGDQLKVFRDRHTWILALLYSVTFG----SFLGVSSIFAMFFKDQFGL-SKVTAGAYASLGGLLGSLARPLGGAISD 286 (366)
T ss_pred chhHHHHHHHHhccchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 0001134456666554443333222222 223445566667654 577 7888898889999999999999999999
Q ss_pred hhcCchHHHhhhHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHH
Q 011657 336 RLGRRPLLLGGVSGIVISLFLLGSYYLFLDD-VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN 414 (480)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 414 (480)
|+|+|+.+..+......+..++.... ... +.+.......+.....+... +..+.+..+..| +++|++.|+.+.++
T Consensus 287 r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~ 362 (366)
T TIGR00886 287 RLGGARKLLMSFLGVAMGAFLVVLGL--VSPLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIG 362 (366)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhc
Confidence 99998887776666555554443211 111 22222222233333333333 345578888888 68999999999887
Q ss_pred HHH
Q 011657 415 FGA 417 (480)
Q Consensus 415 ~~g 417 (480)
++|
T Consensus 363 ~~g 365 (366)
T TIGR00886 363 NLG 365 (366)
T ss_pred cCC
Confidence 765
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=183.53 Aligned_cols=331 Identities=18% Similarity=0.209 Sum_probs=242.1
Q ss_pred HHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
+.+..-.++.|+......+.+|.+++- |+++..|.+++...++.||.+++++.|++.+|+|+|+.+++|+.++
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~ 88 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLY 88 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHH
Confidence 344455578888888899999999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---hcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhh--
Q 011657 135 LVGALVTA---LAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDL-- 175 (480)
Q Consensus 135 ~~~~~~~~---~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~-- 175 (480)
++++.+.. ...+|..++++-|+.|.|.+. +||.+|+.+...
T Consensus 89 avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~ 168 (422)
T COG0738 89 AVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV 168 (422)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence 99999984 667899999999999999998 566666655431
Q ss_pred ----------------hhhhHHHHhchhHHHHHHHHHHhcc--cCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCC
Q 011657 176 ----------------VAGWRYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 237 (480)
Q Consensus 176 ----------------~~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (480)
...||++|...+...+++.+..... |+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-------------------------------- 216 (422)
T COG0738 169 ALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-------------------------------- 216 (422)
T ss_pred hhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc--------------------------------
Confidence 1246777777766666554444432 33211
Q ss_pred CCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHH
Q 011657 238 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVS 316 (480)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 316 (480)
..+...+.......+++++++.+.-.+..+++...+. ....+++.++.+ .|. +..++....
T Consensus 217 -------------~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Ev----a~gsfl~~y~~~~~g~-~~~~aa~~~ 278 (422)
T COG0738 217 -------------AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEV----AIGSFLVSYLEELLGL-NEQQAAYYL 278 (422)
T ss_pred -------------ccccccccccchHHHHHhChHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 0000011112257889999988888777777777654 455566777766 566 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecc
Q 011657 317 ILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISE 396 (480)
Q Consensus 317 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+....+.++|++++.++..|+...+.+.+...+..+.++...+. +..+.+....+. +.+.....|..++...+
T Consensus 279 s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------~g~v~~~~l~~i-g~F~simfPTIfslal~ 351 (422)
T COG0738 279 SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------GGVVALYALFLI-GLFNSIMFPTIFSLALK 351 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHHHHH-HHHhHHHHHHHHHHHHh
Confidence 99999999999999999999998888877665555444444331 223333333333 34444455777788889
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHh
Q 011657 397 VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 397 ~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
..| ++.. ..|....+..+|+++.|.+.|++.|..|....+.....+|.+-.++
T Consensus 352 ~l~-~~ts-~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~ 404 (422)
T COG0738 352 NLG-EHTS-VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLF 404 (422)
T ss_pred ccC-cccc-ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 888 4333 3344455677899999999999999999877776555555555533
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=193.15 Aligned_cols=334 Identities=18% Similarity=0.109 Sum_probs=214.8
Q ss_pred hhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhH-HHHHHHHHH
Q 011657 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRR-ELILAALLY 134 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~ 134 (480)
++..+.........+|.+-++ .|++.+++|++..+... .+..+++|+++||+ |||| .++++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~ 78 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL 78 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence 356666777778888888877 79999999999777775 69999999999999 8875 788888888
Q ss_pred HHHHHHHHhc---CchHHHHHHHHHHHHHHhH------------------------------hHHhhh----hhhhhhhh
Q 011657 135 LVGALVTALA---PDFIIMVVGRFVFGIGIGL------------------------------GGYGIG----SLLVDLVA 177 (480)
Q Consensus 135 ~~~~~~~~~~---~~~~~l~~~r~l~G~g~g~------------------------------~g~~~g----~~l~~~~~ 177 (480)
+++..+.++. .+++.+++..++.++..+. +|..++ ..+.+...
T Consensus 79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~ 158 (402)
T PRK11902 79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL 158 (402)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 8888887876 3567777787777766654 233333 33334334
Q ss_pred hhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccc
Q 011657 178 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE 257 (480)
Q Consensus 178 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (480)
+||..|++.++..++..+..+++||+++.. + +.+ +. .+
T Consensus 159 gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~---------~~~--------------------~~----------~~ 196 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALTTLWAPEPEVPA---R---------PPR--------------------SL----------GE 196 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc---c---------ccc--------------------hh----------HH
Confidence 899999998888776555556677764210 0 000 00 00
Q ss_pred cccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHH-HHHHHHHHHHHHHHhh
Q 011657 258 DKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLG-LFKLIMTGLAVLVVER 336 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~ 336 (480)
+....++++++++.++..++...+....... ......+.+.++.|. ++.+.++.....+ ++.+++.++++++.||
T Consensus 197 ~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~-~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r 272 (402)
T PRK11902 197 AVVGPLRDFFSRRGAWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGF-SAGEVGIVNKTLGLAATIVGALAGGTLMVR 272 (402)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0122456677777666655443333322211 112233445566787 7777888775554 5688999999999999
Q ss_pred hcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHH---HHHHHHhcccccccceeecccCChhhhhhHHHHHHHH
Q 011657 337 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALL---LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV 413 (480)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 413 (480)
+++|+.+..+..+..+..+.+...... .++.+....... +..+.......+....++.+.+|.+.+ ++.+..
T Consensus 273 ~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 347 (402)
T PRK11902 273 LGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSAL 347 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHH
Confidence 999988776666555444333221111 122232222222 122222223344555677777776544 555555
Q ss_pred HHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 414 NFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 414 ~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
..++..+++.+.|.+.|..|+...|.+.+.+++++.++.+.
T Consensus 348 ~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 348 ASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 66677766778999999999998899988888887766544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=191.57 Aligned_cols=344 Identities=21% Similarity=0.227 Sum_probs=235.9
Q ss_pred cccchhhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011657 43 ENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122 (480)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G 122 (480)
+++..+.+|..-.+..++..++...... +..+ +.-|+..++++.++..+...+.++++|.++||+.
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~w-------lv~~-------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~d 73 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAW-------LVTQ-------LTGSPLMVALVQAASTLPILLLSLFAGALADRFD 73 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455666777766666666544443322 2222 4558899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHhH----------------------------------
Q 011657 123 RRRELILAALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGL---------------------------------- 163 (480)
Q Consensus 123 rr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~g~g~---------------------------------- 163 (480)
||++++.+-++.++..++.++ ..+.+.+++.-++.|++.+.
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~ 153 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI 153 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh
Confidence 999999998887766554443 24788999999999999887
Q ss_pred hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChh
Q 011657 164 GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPT 243 (480)
Q Consensus 164 ~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (480)
+||.+||++.... |-.+.|.+.++..++..+.....+..++ .+. . .++
T Consensus 154 iGPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~---------~-------------------~~e 201 (524)
T PF05977_consen 154 IGPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPP---PSS---------L-------------------PRE 201 (524)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccc---ccc---------c-------------------chh
Confidence 8999999988766 7788888887766654444443332210 000 0 000
Q ss_pred hHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHH
Q 011657 244 EVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLF 322 (480)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 322 (480)
.. .+.-+..++-+.+++..+..++...+..+. ...+...+|.+.++ .+. ++...|++.+..+++
T Consensus 202 ~~----------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~----~~a~~aLlPl~a~~~l~~-~a~~yGll~a~~gvG 266 (524)
T PF05977_consen 202 RF----------FSALREGLRYVRSSPPLRSVLLRSFLFNLF----ASAVWALLPLFARDVLGG-GASGYGLLLAAFGVG 266 (524)
T ss_pred hh----------hhhHHHHHHHHhcchHHHHHHHHHHHHHHh----hhHHHHhhhHHHHHHhCC-cHHHHHHHHHHHHHH
Confidence 00 001112233333444444333322222221 12333456776654 566 788899999999999
Q ss_pred HHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhh
Q 011657 323 KLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL 402 (480)
Q Consensus 323 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 402 (480)
.++|.++.+++.+|+++++++..+.++.+++++.+++ ..+.+.....+++.+.+... ......+..++..|++.
T Consensus 267 ai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal-----~~~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~ 340 (524)
T PF05977_consen 267 AILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL-----SPSFWLALIALFLAGAAWII-ANSSLNTLVQLSVPDWV 340 (524)
T ss_pred HHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHH
Confidence 9999999999999999988888888777777666654 23344444444444433333 33444578899999999
Q ss_pred hhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcC
Q 011657 403 RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 403 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (480)
||++++++++....+..+|..+.|.+.+..|....+.+.+++.+++.++.+
T Consensus 341 ~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 341 RGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888877766655555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=185.78 Aligned_cols=313 Identities=12% Similarity=0.088 Sum_probs=216.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----- 163 (480)
++-..+++|++.+.+.+.+.+..++.|.+.||+|+|-.+++|++++...+++.++.++|+.+++.|.+||+|.+.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 566788999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhccc
Q 011657 164 ------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK 213 (480)
Q Consensus 164 ------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 213 (480)
+||.+|+++.+.. |.+.+|++.++++++-..+.+++-|..+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-------- 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE-------- 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence 7888888887776 9999999999999996555555433210
Q ss_pred ccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHH
Q 011657 214 RKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSV 293 (480)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
.+.++..+..+++++++++..+....... +++.+ ....
T Consensus 252 --------------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~---~~n~~-lafL 289 (464)
T KOG3764|consen 252 --------------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAIT---FSNSS-LAFL 289 (464)
T ss_pred --------------------------------------cCccccccCccHHHHHhCchHhhhhcchh---hccch-HHHh
Confidence 00002233446778888776543322211 11111 1111
Q ss_pred HHhHHH-HHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 294 LYYAAS-ILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 294 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
--..+. ..++..- +..+.++......+...++..+.|.+.||+++.+.+.....+..++......-+...-...+...
T Consensus 290 ePtlslwm~e~m~~-p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~ 368 (464)
T KOG3764|consen 290 EPTLSLWMLETMFT-PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPN 368 (464)
T ss_pred CcccHHHHHHhccC-CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhh
Confidence 111222 2344442 45589999999999999999999999999995444433333333332222211110001112222
Q ss_pred HHHHHHHHHHhcccccccceeecccCChh---hhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHH
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLR---LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (480)
..+.+.++.......|.. .+..|....+ .-|...++......+|.++||.+.|.+.+..|+.|...+.++..++-.
T Consensus 369 ~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 369 FGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 233333333444444544 4555544444 668889999999999999999999999999999998888888877766
Q ss_pred HhcCC
Q 011657 450 AFIFX 454 (480)
Q Consensus 450 ~~~~~ 454 (480)
-+..+
T Consensus 448 pvl~l 452 (464)
T KOG3764|consen 448 PVLLL 452 (464)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=215.40 Aligned_cols=309 Identities=14% Similarity=0.021 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH------
Q 011657 93 SVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL---AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL------ 163 (480)
Q Consensus 93 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------ 163 (480)
....++..+++.+++.++++++|+++||+|||+++.. ..++..+..+.+...+|+++++++|+++|++.+.
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3567889999999999999999999999999997533 3333333334444558999999999999999887
Q ss_pred ----------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhccccc
Q 011657 164 ----------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRK 215 (480)
Q Consensus 164 ----------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 215 (480)
+|+.+++++.... +|++.|+..++..++.++..+++|+++.- .++ .+
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~ 205 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNA--APD--LK 205 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCC--Ce
Confidence 7888888887765 99999955555555555666667765320 000 00
Q ss_pred CchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHH
Q 011657 216 GDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLY 295 (480)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (480)
..... .......++.+.+++.++...+...+..+. ...+..
T Consensus 206 -------------------------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 246 (1140)
T PRK06814 206 -------------------------IDRNI----------IRSTITLLKYAKADKRIWLAILGISWFWLV----GAVVLS 246 (1140)
T ss_pred -------------------------eccch----------HHHHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHH
Confidence 00000 000112345566666555544443333322 224445
Q ss_pred hHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHh-------------
Q 011657 296 YAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYY------------- 361 (480)
Q Consensus 296 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------------- 361 (480)
+.|.++++ .|. +....+++.+...++.+++.++.+++.++..+++.+..+.++.+++.+.+.+..
T Consensus 247 ~~p~~~~~~~g~-~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (1140)
T PRK06814 247 QLPLLAKETLGG-DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI 325 (1140)
T ss_pred HhHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence 67777665 566 888999999999999999999999999888776665555554444433332210
Q ss_pred --hccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh-hCccHHH
Q 011657 362 --LFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-LGAGILF 438 (480)
Q Consensus 362 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~g~~~~~ 438 (480)
.....+.+...+..++++.+.+ ...+...+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+. .++...+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~ 404 (1140)
T PRK06814 326 LVFLSKRHGWRILIDLFGLAAAGG-LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWII 404 (1140)
T ss_pred hhhhcccccHHHHHHHHHHHHHHH-HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 0001233333333333333333 33344568999999999999999999999999999999999988753 3445455
Q ss_pred HHHHHHHHH
Q 011657 439 YAFGVIAVL 447 (480)
Q Consensus 439 ~~~~~~~~~ 447 (480)
++.+.+.++
T Consensus 405 ~~~~~~~~~ 413 (1140)
T PRK06814 405 LFIALANLI 413 (1140)
T ss_pred HHHHHHHHH
Confidence 544444333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-21 Score=165.83 Aligned_cols=331 Identities=22% Similarity=0.203 Sum_probs=241.0
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
.+..+...-..+.++|.++++.+| +|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++..+|
T Consensus 18 vlia~NLR~~itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 18 VLIAFNLRPAITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred HHHHhccchhhhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333355555677889999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhH-----------------------------hHHhhhhh----hhhhhhhhHHHHh
Q 011657 138 ALVTALAPDFIIMVVGRFVFGIGIGL-----------------------------GGYGIGSL----LVDLVAGWRYMYG 184 (480)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~g~g~-----------------------------~g~~~g~~----l~~~~~~wr~~f~ 184 (480)
.++-... +...++.+-.+.|.|.+. +|..++.. +.+...+||....
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 9998887 888889999999998887 33333333 3334457999999
Q ss_pred chhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHH
Q 011657 185 ASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR 264 (480)
Q Consensus 185 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (480)
+-+.++++.++.++.-...++ . ...+.+..+..
T Consensus 170 ~WAl~allAl~~WlPq~~r~~-----~------------------------------------------~~~~~~~~~~~ 202 (395)
T COG2807 170 FWALLALLALLIWLPQALREQ-----A------------------------------------------ASIATKLVSVR 202 (395)
T ss_pred HHHHHHHHHHHHHhhhccccc-----c------------------------------------------ccccccccccc
Confidence 999999887776654321100 0 00122233445
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhc-CchHH
Q 011657 265 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG-RRPLL 343 (480)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~ 343 (480)
+++|++.-|.+.+.+.+..+ .++....|+|.++.+.|. |..+++.+.+...+..++..+....+.+|.. +|+..
T Consensus 203 ~vw~~~~aW~vtLfmGlqS~----~~Y~~~~WLP~ili~~G~-sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~ 277 (395)
T COG2807 203 KVWRSPLAWQVTLFMGLQSL----LYYIVIGWLPAILIDRGL-SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV 277 (395)
T ss_pred ccccCchhHHHHHHHHhhHH----HHHHHHHHHHHHHHHcCC-CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 67888877766655444444 345777899999999999 9999999999999999999999999999764 56666
Q ss_pred HhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccC-ChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 344 LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF-PLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
.....++.++.+.+.+. +....+++ ..+++.+.+ +..|+..+.+.+.. .++..+.-.|+.+.++++-.++||
T Consensus 278 ~~~~~~~l~G~~G~~~~---P~~~~~lw---~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP 350 (395)
T COG2807 278 VLALLLMLVGLVGLLLA---PGQLPILW---ALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGP 350 (395)
T ss_pred HHHHHHHHHHHHHHHHh---hhhHHHHH---HHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhh
Confidence 66666677776665432 22233333 122222222 22344445555543 446677888899999999999999
Q ss_pred hcchhhHHhhC-ccHHHHHHHHHHHHHHHhcCCC
Q 011657 423 FAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 423 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
.++|.+.|..| |...+..++.+.++..+..+..
T Consensus 351 ~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 351 WLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred hhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999887 5555666666666655555543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=213.22 Aligned_cols=307 Identities=18% Similarity=0.096 Sum_probs=196.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HhcCchHHHHHHHHHHHHHHhH-----
Q 011657 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALAPDFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 92 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~g~----- 163 (480)
+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++++.++++|+++|++.+.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 44568999999999999999999999999999999999887766555544 4457899999999999999887
Q ss_pred -----------------------------hHHhhhhhhhhh--------hhhhHHHHhchhHHHH-HHHHHHhcccCchH
Q 011657 164 -----------------------------GGYGIGSLLVDL--------VAGWRYMYGASTPLAV-IMGMGMWWLPASPR 205 (480)
Q Consensus 164 -----------------------------~g~~~g~~l~~~--------~~~wr~~f~~~~~~~~-~~~~~~~~~~e~p~ 205 (480)
+|+.+++++... ..+|++.+.+..+... +.++..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 566666666554 2245555544444333 34445556777653
Q ss_pred HHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHH
Q 011657 206 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQ 285 (480)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (480)
....+. + .... .. .......++.+++++..+..++...+.++.
T Consensus 205 ~~~~~~-----------~------------~~~~---~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (1146)
T PRK08633 205 AAPEVF-----------D------------KKKY---LF-----------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFI 247 (1146)
T ss_pred CCcccc-----------c------------cccc---cc-----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 210000 0 0000 00 000112344555655555444433333322
Q ss_pred HhhChhHHHHhHHHHH-HhcCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhc
Q 011657 286 QITGQPSVLYYAASIL-QSAGFSAAS-DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF 363 (480)
Q Consensus 286 ~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
. .....+.|.++ +..|. +.. ..+++.+...++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 248 ~----~~~~~~~~~~~~~~~g~-s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--- 319 (1146)
T PRK08633 248 S----QLAQANFPAYAKEVLGL-DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--- 319 (1146)
T ss_pred H----HHHHHhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---
Confidence 1 23334455554 45677 677 88999999999999999999999999999888877777666666555431
Q ss_pred cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC--ccHHHHHH
Q 011657 364 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG--AGILFYAF 441 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g--~~~~~~~~ 441 (480)
.+.+..++..++++.+.+. ..+...+++.+..|++.||+++|+.+++..++.++++.+.+.+.. .+ +...+++.
T Consensus 320 --~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~ 395 (1146)
T PRK08633 320 --PSLASVLVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLI 395 (1146)
T ss_pred --hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHH
Confidence 2233333333333333333 334455788899999999999999999999998877766655443 33 33344444
Q ss_pred HHHHHH
Q 011657 442 GVIAVL 447 (480)
Q Consensus 442 ~~~~~~ 447 (480)
+.+.++
T Consensus 396 ~~~~~~ 401 (1146)
T PRK08633 396 ALVTLI 401 (1146)
T ss_pred HHHHHH
Confidence 444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=189.31 Aligned_cols=295 Identities=15% Similarity=0.109 Sum_probs=192.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhH-HHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRR-ELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (480)
+|+++.++|++.++..+..++..|+.|+++|| +|||| .++++.+.++++.+++...++ ...+++.+++.
T Consensus 30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL 109 (437)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999997 68744 677888888888888877765 34566677888
Q ss_pred HHHHhH-------------------------------hHHhhhhhh----hh------hhhhhHHHHhchhHHHHHHHH-
Q 011657 158 GIGIGL-------------------------------GGYGIGSLL----VD------LVAGWRYMYGASTPLAVIMGM- 195 (480)
Q Consensus 158 G~g~g~-------------------------------~g~~~g~~l----~~------~~~~wr~~f~~~~~~~~~~~~- 195 (480)
+++.+. +|..+++.+ .. ...+||+.+++.++++++..+
T Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 189 (437)
T TIGR00792 110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII 189 (437)
T ss_pred HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 877654 232222221 11 123899999999888877444
Q ss_pred HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 196 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 196 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
..+..+|+++.. . . .++++.+....++++++++.++..
T Consensus 190 ~~~~~~e~~~~~---~--------------------------~-------------~~~~~~~~~~~~~~l~~~~~~~~~ 227 (437)
T TIGR00792 190 CFFGTKERYSEI---P--------------------------K-------------NIEKKLSLKQIFKALFKNDQLLIL 227 (437)
T ss_pred HHcCCEecCCCC---C--------------------------c-------------ccccCCCHHHHHHHHhCCHHHHHH
Confidence 445566653100 0 0 000001112234566666655554
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 355 (480)
.+...+..... .....+.+++.+.... +....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+
T Consensus 228 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 302 (437)
T TIGR00792 228 CLAYLFYNLAF----NIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL 302 (437)
T ss_pred HHHHHHHHHHH----HHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44333332222 2222334444443322 455667777778899999999999999999999999888877777665
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCC-------hhhhhhHHHHHHHHHHHHHHhHhhcchhh
Q 011657 356 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 428 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 428 (480)
.+.+. .++.+...+...+...+.+ ...+..+++..|..+ ++.+|.+.|+.+++..++..+++.+.|.+
T Consensus 303 ~~~~~----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 303 IFFFA----GSNLPLILVLIILAGFGQN-FVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHc----chhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54331 1222222332233222222 233455567777654 56689999999999999999999999999
Q ss_pred HHhhCcc
Q 011657 429 KDLLGAG 435 (480)
Q Consensus 429 ~~~~g~~ 435 (480)
.+..|+.
T Consensus 378 l~~~G~~ 384 (437)
T TIGR00792 378 LGIIGYV 384 (437)
T ss_pred HHHcCCC
Confidence 9887763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=180.78 Aligned_cols=338 Identities=16% Similarity=0.016 Sum_probs=209.4
Q ss_pred HHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHH--HHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHH
Q 011657 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI--TSGSLYGALIGSILAF-NIADILGRRRELILAAL 132 (480)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~ 132 (480)
.+..-++..|...+...+.+|.+.+| .|.+..++|++ .+.+.+...+.+++++ +..||+||||..++.+.
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~ 77 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQ 77 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHH
Confidence 34555678888888889999999988 89999999997 4677888888888884 47999999998766553
Q ss_pred HH-HHHHHHHH-h--cCc-hHHHHHHHHHHHHHHhH------------------------------hHHhhhhh----hh
Q 011657 133 LY-LVGALVTA-L--APD-FIIMVVGRFVFGIGIGL------------------------------GGYGIGSL----LV 173 (480)
Q Consensus 133 ~~-~~~~~~~~-~--~~~-~~~l~~~r~l~G~g~g~------------------------------~g~~~g~~----l~ 173 (480)
+. +......+ + ..+ ...++..-++.++..+. +|+.+|+. +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~ 157 (390)
T TIGR02718 78 CLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF 157 (390)
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 21222222 1 222 22333333444333333 46666653 33
Q ss_pred hhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhh
Q 011657 174 DLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS 253 (480)
Q Consensus 174 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (480)
+.. +||..|++.+++.++..+..++++|+++. ++ +
T Consensus 158 ~~~-gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~-----------~------------------------------ 192 (390)
T TIGR02718 158 GKF-GQRPAFLLVACVPLASLVCVLWLKDRAVA---SP-----------E------------------------------ 192 (390)
T ss_pred HHh-CHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cc-----------c------------------------------
Confidence 444 99999999998887755555555443210 00 0
Q ss_pred cccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHH-HHHHHHHHHHH
Q 011657 254 YVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGL-FKLIMTGLAVL 332 (480)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~ 332 (480)
.++++..+.++.+|++..+......++..... .....+.+.++++.|+ ++++.+......++ ..+++.++.|+
T Consensus 193 -~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g~ 266 (390)
T TIGR02718 193 -APLARRASLFRFFRRPLAWSLLALALLSAMTA----VSGFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGAW 266 (390)
T ss_pred -cchhhHHHHHHHHcCcCHHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00001123566777766555444333333222 2333355667778888 88888888877764 66677899999
Q ss_pred HHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH-HHHhcccccccceeecccCCh-hhhhhHHHHH
Q 011657 333 VVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYV-GCYQLSFGPIGWLMISEVFPL-RLRGRGLSVA 410 (480)
Q Consensus 333 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~ 410 (480)
+.||+|+|+.+..+..+..+.........................+. ...+... +..++...+..++ +.+++.+++.
T Consensus 267 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 345 (390)
T TIGR02718 267 LVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAV 345 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHH
Confidence 99999999988876665533322221111100011111111221221 1122222 2333454455554 8899999999
Q ss_pred HHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 411 VLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 411 ~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
+...++|..++|.+.|.+.|..|+...|.+.+++.+++.+..
T Consensus 346 ~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 346 QSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888888777777665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=188.02 Aligned_cols=351 Identities=12% Similarity=0.064 Sum_probs=200.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHHHhH---
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFII-MVVGRFVFGIGIGL--- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~g~g~--- 163 (480)
+|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++++... ++++|+++|+|.|.
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA 124 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence 89999999999999999999999999999999 99999999999999999999999887554 55899999999887
Q ss_pred ---------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHh
Q 011657 164 ---------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLC 210 (480)
Q Consensus 164 ---------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 210 (480)
+|+.+++++.+.. |||+.|++.++..++.++.+.+.++..+ .+
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~~~~~---~~ 200 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACRGMVK---DI 200 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcchhhc---cc
Confidence 6677777777766 9999999875533333333433332211 11
Q ss_pred ccccc---CchhhhHHHHHH------HHHHHhCCCCCCCChhhHHHHH----Hh---hhcccccccccHHHHhhhhhhhH
Q 011657 211 AMKRK---GDMQDLRESAIS------CLCRLRGQSIGDSAPTEVDEIL----TE---LSYVGEDKEVSLREVFHGKCLKA 274 (480)
Q Consensus 211 ~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~ 274 (480)
+.+++ .|..+...-... ....... ..+ ........ .. ...+.+. .+.+|++.+..
T Consensus 201 ~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~i~~~~f~~~~~~~-----~~~~r~r~~~~ 271 (489)
T PRK10207 201 GSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH--NVE--VANLVLIVLSIVVTIIFFREAFKL-----DKTGRNKMFVA 271 (489)
T ss_pred CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh--hhh--HHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Confidence 00010 111010000000 0000000 000 00000000 00 0000111 13444433222
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCC---CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH-------H
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQS-AGFS---AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL-------L 343 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~ 343 (480)
..+. +.....+..+....+..+.+.++ .+.. -......+.....+..++..++.+++.||+++|+. +
T Consensus 272 ~~l~--~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~ 349 (489)
T PRK10207 272 FVLM--LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKF 349 (489)
T ss_pred HHHH--HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 2111 11111111111222333444432 2110 01123445555666777888888999999998863 6
Q ss_pred HhhhHHHHHHHHHHHHH---hhcc-CCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHH
Q 011657 344 LGGVSGIVISLFLLGSY---YLFL-DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 419 (480)
Q Consensus 344 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 419 (480)
.+|+++.+++++.+... .... ...+.+.++...++.+.......|....++.+..|++.++.++|+.+....+|+.
T Consensus 350 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~ 429 (489)
T PRK10207 350 TLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL 429 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 66777777666543211 1111 1223333334444444444445566678899999999999999999999999999
Q ss_pred hHhhcchhhHH----------hhCccHHHHHHHHHHHHHHHhcCC
Q 011657 420 LVTFAFSPLKD----------LLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 420 i~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
++..+...... ...+.+.|...++.++++.++.+.
T Consensus 430 lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 430 LGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 98877654421 112345666666666655555544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=173.17 Aligned_cols=332 Identities=17% Similarity=0.163 Sum_probs=226.2
Q ss_pred cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhcCch
Q 011657 69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-RRRELILAALLYLVGALVTALAPDF 147 (480)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~ 147 (480)
+...|.++..-++ .|.|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++........+++
T Consensus 19 G~~~p~~~~~L~~-------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f 91 (400)
T PF03825_consen 19 GAFLPYLPLYLES-------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSF 91 (400)
T ss_pred HHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3445555655555 7899999999999999999999999999999986 6778888888888877788888999
Q ss_pred HHHHHHHHHHHHHHhH----------------------------hHHhhhhhh-----hhhh--hhhHHHHhchhHHHHH
Q 011657 148 IIMVVGRFVFGIGIGL----------------------------GGYGIGSLL-----VDLV--AGWRYMYGASTPLAVI 192 (480)
Q Consensus 148 ~~l~~~r~l~G~g~g~----------------------------~g~~~g~~l-----~~~~--~~wr~~f~~~~~~~~~ 192 (480)
+.+++.-++..+.... +|..++++. .... .+..+.+++.++.+++
T Consensus 92 ~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 171 (400)
T PF03825_consen 92 WWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLL 171 (400)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 9888887777776544 666666432 1111 1223455666666555
Q ss_pred HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhh
Q 011657 193 MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL 272 (480)
Q Consensus 193 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (480)
.....+.+|+.|+....+ +..++....+..+++|+|..
T Consensus 172 l~~~~l~lp~~~~~~~~~------------------------------------------~~~~~~~~~~~~~llk~~~~ 209 (400)
T PF03825_consen 172 LAGFALFLPKTPPKRSAK------------------------------------------ESVKKLLGLDALKLLKNPRF 209 (400)
T ss_pred HHHHHHhCCCCccccccC------------------------------------------CCcccccchHHHHHhcCccH
Confidence 555566678776200000 00011112233467777766
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHH
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 352 (480)
...++..++... .......|.+.++++.|..+....+...++..+++++.-...+++..|+|.|+++.++.+..++
T Consensus 210 ~~Fll~~~l~~~----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 210 LVFLLAAFLIGI----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAV 285 (400)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 554444333332 2345666778888998832667778888889999999999999999999999999999988888
Q ss_pred HHHHHHHHhhccCCchhHHHHHHH----HHHHHHhcccccccceeecccCChhhhhhHHHHHHHH-HHHHHHhHhhcchh
Q 011657 353 SLFLLGSYYLFLDDVPAVAVVALL----LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTFAFSP 427 (480)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~i~~~~~~~ 427 (480)
=..++... .++.+....... +.+..++... .....++.+..|++.|+++.++++.. ..+|..+|..+.|+
T Consensus 286 R~~l~a~~----~~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~ 360 (400)
T PF03825_consen 286 RWLLYAYF----SDPWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW 360 (400)
T ss_pred HHHHHHHh----cCCcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87776542 122222222222 2333344333 34448999999999999999999886 57999999999999
Q ss_pred hHHhhCccH------HHHHHHHHHHHHHHhcCCCCCC
Q 011657 428 LKDLLGAGI------LFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 428 ~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
+.|+.|.+. .+.+.+++.++..++.+++.||
T Consensus 361 l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 361 LYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999988654 3445555555555554444443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-20 Score=176.69 Aligned_cols=392 Identities=13% Similarity=0.079 Sum_probs=222.9
Q ss_pred ccchhhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011657 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123 (480)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr 123 (480)
..+|......+.+...+...++ ++...+.+.++ +|++..+.+++.++. .....++++.|+++||+||
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~y~-----fsv~s~~L~~~-------lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~ 90 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFMYA-----FNLISGAMQAR-------YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGP 90 (591)
T ss_pred cchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-------hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 3445444444333333333333 33445666666 999999999998874 4556788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHhH-----------------------------hHHhh
Q 011657 124 RRELILAALLYLVGALVTALA------PDFIIMVVGRFVFGIGIGL-----------------------------GGYGI 168 (480)
Q Consensus 124 r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~g~g~-----------------------------~g~~~ 168 (480)
|+++.++.+++++++++++++ ++++.+.+.|+++|+|.+. +|..+
T Consensus 91 R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI 170 (591)
T PTZ00207 91 RPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAI 170 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 6899999999999999875 33322
Q ss_pred hhhhhh--hhhhhHHHHhchhHHHHHHH-HHHhcc--cCchHHHHHhcccccCchh-----------------h------
Q 011657 169 GSLLVD--LVAGWRYMYGASTPLAVIMG-MGMWWL--PASPRWLLLCAMKRKGDMQ-----------------D------ 220 (480)
Q Consensus 169 g~~l~~--~~~~wr~~f~~~~~~~~~~~-~~~~~~--~e~p~~~~~~~~~~~~~~~-----------------~------ 220 (480)
.+.+.. ...+|+..|++.+++.++.. +..+++ |+.|++..++++..+.+.. .
T Consensus 171 ~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~ 250 (591)
T PTZ00207 171 LGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFV 250 (591)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHH
Confidence 111111 12378888888888877743 334444 4444443221100000000 0
Q ss_pred ----------------------hHH-HHHHH--H--H-----------HHhCCCCCCCChh----hHH--HHHHhhhc--
Q 011657 221 ----------------------LRE-SAISC--L--C-----------RLRGQSIGDSAPT----EVD--EILTELSY-- 254 (480)
Q Consensus 221 ----------------------~~~-~~~~~--~--~-----------~~~~~~~~~~~~~----~~~--~~~~~~~~-- 254 (480)
+.. ..... + . .....++.++.+. ..+ ....+.+.
T Consensus 251 i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (591)
T PTZ00207 251 ILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKV 330 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccc
Confidence 000 00000 0 0 0000000000000 000 00000000
Q ss_pred -------ccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhc-CCCCCcc--hHHHHHHHHHHHH
Q 011657 255 -------VGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASD--ATRVSILLGLFKL 324 (480)
Q Consensus 255 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~--~~~~~~~~~~~~~ 324 (480)
...+...++.+.+++..+|.+++..++.... ...+...+.++.+.. |. +.++ ...+.++.++++.
T Consensus 331 ~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~----gl~~~~N~~qI~~sl~g~-~~~~~~~~~~vsL~si~~~ 405 (591)
T PTZ00207 331 VETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGA----HFVIIFNARFIYTALAGE-APDDALNTLLTVLNGVGSA 405 (591)
T ss_pred ccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCc----hheeeecHHHHHHHhcCC-CCCccceeeehhhhhHHHH
Confidence 0011112666777777777666544443332 234455667777888 55 2322 3337899999999
Q ss_pred HHHHHHHHHHhhhcCc--------hHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecc
Q 011657 325 IMTGLAVLVVERLGRR--------PLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISE 396 (480)
Q Consensus 325 ~~~~~~g~l~d~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+|++..|.+.....+| +..+....++.++.+++.+. ......++..++.+.+.+..+ ++....++|
T Consensus 406 ~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~-----~p~~~L~~~~~lvg~~~G~~~-~~~~~i~se 479 (591)
T PTZ00207 406 VGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT-----LPKAALPLPYFIAAFANGFMA-ATIALVTRT 479 (591)
T ss_pred hhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH-----CCccHhHHHHHHHHHHhhHhH-HHHHHHHHH
Confidence 9999999887322222 12222222233333333321 111234444444444544444 455589999
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHhH-hhcchhhHHhhC-------------ccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 397 VFPLRLRGRGLSVAVLVNFGANALV-TFAFSPLKDLLG-------------AGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 397 ~~p~~~~~~~~~~~~~~~~~g~~i~-~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
+|. ++-|+-.-+.....-+|..+. ..++|.++|+.. ++.+|+++++++.++.+....+..+++
T Consensus 480 lFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 480 IFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred Hhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 999 888877777776677777666 557788887522 456899999998888887666554443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=165.30 Aligned_cols=323 Identities=19% Similarity=0.137 Sum_probs=192.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH------
Q 011657 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL------ 163 (480)
Q Consensus 90 ~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------ 163 (480)
+.+..-.|.+.+.|.+.+.+.++.+|.++||||||+++.++++..++..++.++++|+..+.+.|++.|+..|.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rA 143 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRA 143 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHH
Confidence 44677889999999999999999999999999999999999999999999999999997777779999998877
Q ss_pred ---------------------------hHHhhhhhhhhhh-hhhHHHHh----chhHHHHH-HHHHHhcccCchHHHHHh
Q 011657 164 ---------------------------GGYGIGSLLVDLV-AGWRYMYG----ASTPLAVI-MGMGMWWLPASPRWLLLC 210 (480)
Q Consensus 164 ---------------------------~g~~~g~~l~~~~-~~wr~~f~----~~~~~~~~-~~~~~~~~~e~p~~~~~~ 210 (480)
+||.+|+++.... ..=+.+|. +..+++.. .....+++||+-...+++
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~ 223 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN 223 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc
Confidence 8888888887611 01112222 22223333 445667789983211111
Q ss_pred cccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhH---HHHHHHHHHHHHh
Q 011657 211 AMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA---LIIGAGLVLFQQI 287 (480)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 287 (480)
+.+.+ .+++....... .+..+......++++.... .+-.+.+..+...
T Consensus 224 --~~~~~----~~~~~~~~~~~-----------------------~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~ 274 (451)
T KOG2615|consen 224 --DEHST----LQEAADDRLAL-----------------------LKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYL 274 (451)
T ss_pred --ccccc----hhhhhhhhhhh-----------------------cchhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 00000 00000000000 0000000011112211111 1111111112111
Q ss_pred hChhHHHHhHHHH-HHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhc--CchHHHhhhHHHHHHHHHHHHHhhcc
Q 011657 288 TGQPSVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG--RRPLLLGGVSGIVISLFLLGSYYLFL 364 (480)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (480)
..+..+.++...+ .+..|+ ++.+.|.+.+..++.+.+......+..||.+ .+-.+..+..++.-.++++..
T Consensus 275 ~l~s~~~~t~~~l~~~rfg~-ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~----- 348 (451)
T KOG2615|consen 275 ELFSGLENTVLFLTHGRFGY-SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL----- 348 (451)
T ss_pred HHHHHHHhhHHHhhcCccCC-ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-----
Confidence 1122333333333 255778 8889999999998888888887777777766 444454444444444443332
Q ss_pred CCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-CccHHHHHHHH
Q 011657 365 DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-GAGILFYAFGV 443 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-g~~~~~~~~~~ 443 (480)
...+........+..+..... .+....++....|.++||+.+|+....+.++-++||.+.|.+..+. +-+..+...+.
T Consensus 349 ~~~~~~l~~~s~l~sf~~A~~-vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~ 427 (451)
T KOG2615|consen 349 ARTPVVLYLGSTLKSFSTASV-VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGA 427 (451)
T ss_pred cccchhhhHHHHHHHHHHHHh-hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHH
Confidence 223333333333333333333 3444578888999999999999999999999999999998877642 22333333333
Q ss_pred HHHHH
Q 011657 444 IAVLS 448 (480)
Q Consensus 444 ~~~~~ 448 (480)
+.++.
T Consensus 428 L~~~~ 432 (451)
T KOG2615|consen 428 LLLIP 432 (451)
T ss_pred HHHHH
Confidence 33333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=175.89 Aligned_cols=294 Identities=13% Similarity=0.051 Sum_probs=184.5
Q ss_pred ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHH-HHHHHHHHHHHHHHH
Q 011657 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRE-LILAALLYLVGALVT 141 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~ 141 (480)
....++.+|.+.+| +|+|..+.+++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l 74 (356)
T TIGR00901 4 LGLVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL 74 (356)
T ss_pred chhHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 34566778888877 89999999999755 555555 99999999998 89887 567788888887777
Q ss_pred Hhc---CchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhh------
Q 011657 142 ALA---PDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAG------ 178 (480)
Q Consensus 142 ~~~---~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~------ 178 (480)
++. .+.+.+....++.+++.+. +|+.+++.+.+.. +
T Consensus 75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~ 153 (356)
T TIGR00901 75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLI 153 (356)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccc
Confidence 777 4556667777777776654 3444444443443 5
Q ss_pred --hHHHHhchhHHHHHHHHHHh-cccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcc
Q 011657 179 --WRYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 255 (480)
Q Consensus 179 --wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (480)
||..|++.++..++..+..+ ..||+++. . .+ . +.+
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~----~----~~---~--------------------~~~----------- 191 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEPQED----A----SV---P--------------------KPL----------- 191 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCCCcc----c----cc---c--------------------hhH-----------
Confidence 99999999888777555444 35664210 0 00 0 000
Q ss_pred cccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHH-HHHHHHHHHHHHHH
Q 011657 256 GEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLG-LFKLIMTGLAVLVV 334 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~ 334 (480)
+++.+..++++++++..+..........+.. ........+.|.++++.|+ +..+.+......+ +..+++.++++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~-~~~~~g~~~~~~~~~~~~~g~~~~g~l~ 269 (356)
T TIGR00901 192 TQAVLKPIREFFQRKNMIQALLLLLLIVLYK-LGDSAATVLTTLFLLDMGF-SKEEIALVAKINGLLGAILGGLIGGIIM 269 (356)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC-CHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0001123455666554222322222222222 2233455567777777888 7778777776655 67789999999999
Q ss_pred hhhcCchHHHhhhHHHHHHHHHHHHHhhccC-C----chhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHH
Q 011657 335 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-D----VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 409 (480)
Q Consensus 335 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 409 (480)
||+|+|+.+..+.++.+++..++.+...... . ...+.+....++.........+...++..|.+|+++||+.+|+
T Consensus 270 ~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 349 (356)
T TIGR00901 270 QPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMAL 349 (356)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 9999999888877777666554433211100 0 1222222223232332233345556899999999999999999
Q ss_pred HHHHHH
Q 011657 410 AVLVNF 415 (480)
Q Consensus 410 ~~~~~~ 415 (480)
.++..+
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 987654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=174.98 Aligned_cols=379 Identities=12% Similarity=0.048 Sum_probs=215.1
Q ss_pred hcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHH
Q 011657 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALV 140 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~ 140 (480)
+...+......+.+|....+. ..+|.+..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++++++.++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~ 95 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQ----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFM 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 333444444455555553321 0178999999999999999999999999999999 89999999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHhH-------------------------------------hHHhhhhhhhhhhhhhHHHH
Q 011657 141 TALAPDFIIMVVGRFVFGIGIGL-------------------------------------GGYGIGSLLVDLVAGWRYMY 183 (480)
Q Consensus 141 ~~~~~~~~~l~~~r~l~G~g~g~-------------------------------------~g~~~g~~l~~~~~~wr~~f 183 (480)
.+++++++.++++|++.|+|.|. +|+.+++.+.+.. +||+.|
T Consensus 96 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f 174 (475)
T TIGR00924 96 LAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGF 174 (475)
T ss_pred HHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHH
Confidence 99999999999999999998876 5666666665554 899999
Q ss_pred hchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHH----------HHH-HhCCCCCCCChhhHHH---H-
Q 011657 184 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISC----------LCR-LRGQSIGDSAPTEVDE---I- 248 (480)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~---~- 248 (480)
++.++..++..+.+++.++..+ ..+.+++...+++.+..... ... ....+.. ....... .
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 249 (475)
T TIGR00924 175 NLAAVGMVIGLLTFFAGRHMLR---DIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVV--IANILLMTVTLA 249 (475)
T ss_pred HHHHHHHHHHHHHHHHcccccc---cCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9988655554443333332110 00000000000000000000 000 0000000 0000000 0
Q ss_pred -HHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCC---CCcchHHHHHHHHHHH
Q 011657 249 -LTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFS---AASDATRVSILLGLFK 323 (480)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~ 323 (480)
.........++..+ +.-+++.. . ++.+.+.....+..+.-.....+.+.++ .+.. -....+++.+...+..
T Consensus 250 ~~~~~~~~~~~~~~~--~~~~~~~~-~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~i 325 (475)
T TIGR00924 250 VIIFFFRLAFKPRLD--AVARNKMY-A-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWV 325 (475)
T ss_pred HHHHHHHHHHhccCC--HHHHhHHH-H-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHH
Confidence 00000000000001 11111111 1 1111121111112222222223333332 2220 1122667788888888
Q ss_pred HHHHHHHHHHHhhhcC-----chHH--HhhhHHHHHHHHHHHHHhhc-c--CCchhHHHHHHHHHHHHHhccccccccee
Q 011657 324 LIMTGLAVLVVERLGR-----RPLL--LGGVSGIVISLFLLGSYYLF-L--DDVPAVAVVALLLYVGCYQLSFGPIGWLM 393 (480)
Q Consensus 324 ~~~~~~~g~l~d~~g~-----~~~~--~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
++..++..++-.|.+| +... .+|+++.++++..+.+.... . ...+.++++...++.+.......|...++
T Consensus 326 il~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~ 405 (475)
T TIGR00924 326 VVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSW 405 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8887776554444443 2333 56777777776665432111 0 12234444444444444455556788899
Q ss_pred ecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 394 ISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 394 ~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
+.+..|++.||+.+|+......+|..+++.+.+...+..++...|...++++++..++.++
T Consensus 406 ~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 406 WTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887777667777777777766666665544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=189.72 Aligned_cols=341 Identities=13% Similarity=0.156 Sum_probs=220.8
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (480)
++..+......+..+.+++.++++ |+++..+.|++.+.+.++++++.++.|+++||+|||+.+.+++++++++
T Consensus 39 ~~~~~~~~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg 111 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG 111 (633)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH
Confidence 445555556678888999999988 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC---------------------------------------------------chHHHHHHHHHHHHHHhH---
Q 011657 138 ALVTALAP---------------------------------------------------DFIIMVVGRFVFGIGIGL--- 163 (480)
Q Consensus 138 ~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~g~g~--- 163 (480)
++++++.+ .+..++++|+++|+|.+.
T Consensus 112 ~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~ 191 (633)
T TIGR00805 112 SFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP 191 (633)
T ss_pred HHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence 99988763 245778999999999887
Q ss_pred -------------------------------hHHhhhhhhhhhh---------------------hhhHHHHhchhHHHH
Q 011657 164 -------------------------------GGYGIGSLLVDLV---------------------AGWRYMYGASTPLAV 191 (480)
Q Consensus 164 -------------------------------~g~~~g~~l~~~~---------------------~~wr~~f~~~~~~~~ 191 (480)
+|+++|+.+.... ..||..|++.+++.+
T Consensus 192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~ 271 (633)
T TIGR00805 192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL 271 (633)
T ss_pred cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 5555555554321 137888998888888
Q ss_pred HHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhh
Q 011657 192 IMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC 271 (480)
Q Consensus 192 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (480)
+..+.++++|++.+....+. +. +.++... .. ...... .... ....++.....+.+++++.
T Consensus 272 l~~v~l~~~p~~lp~~~~~~-----~~--~~~~~~~----~~-~~~~~~-~~~~-------~~~~~~~~~~~~~Ll~n~~ 331 (633)
T TIGR00805 272 LTSIPFFFFPKALPKEGKRV-----NV--DVHETEK----LE-KSEDKS-RKKN-------SDITKDFPKIIKRLLCNPI 331 (633)
T ss_pred HHHHHHHhCccccCCccccc-----ch--hhhhhhc----cc-cccccc-chhh-------hhhHHHHHHHHHHHHcCcH
Confidence 76666666665421000000 00 0000000 00 000000 0000 0000111234556777765
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhhcC--chHHHhhh
Q 011657 272 LKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL-FKLIMTGLAVLVVERLGR--RPLLLGGV 347 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~ 347 (480)
++...+...+... ....+..|.|.++++ .|. ++.+++++.....+ +.+++.+++|+++||++. |+.+.+++
T Consensus 332 f~~~~l~~~~~~~----~~~~~~~~lP~yl~~~~g~-s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~ 406 (633)
T TIGR00805 332 YMLVILAQVIDSL----AFNGYITFLPKYLENQYGI-SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAI 406 (633)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHH
Confidence 5554443333332 334666788888875 666 88888888877776 568999999999999984 45666666
Q ss_pred HHHHHHHHHHHHHh-------------------------h-c-------cC-----------------------------
Q 011657 348 SGIVISLFLLGSYY-------------------------L-F-------LD----------------------------- 365 (480)
Q Consensus 348 ~~~~~~~~~~~~~~-------------------------~-~-------~~----------------------------- 365 (480)
++..+++++....+ . . ..
T Consensus 407 ~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~ 486 (633)
T TIGR00805 407 CLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTG 486 (633)
T ss_pred HHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCC
Confidence 66555544422100 0 0 00
Q ss_pred --------------------------C-ch-hH-HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHH-HH
Q 011657 366 --------------------------D-VP-AV-AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NF 415 (480)
Q Consensus 366 --------------------------~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~ 415 (480)
. .. .. .++..++..........|.. ..+-..+|+++|+.+.|+..++ +-
T Consensus 487 ~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~rl 565 (633)
T TIGR00805 487 SNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCMRV 565 (633)
T ss_pred CcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHHHHH
Confidence 0 01 11 12222222233334445555 6778889999999999999987 56
Q ss_pred HHHHhHhhcchhhHHh
Q 011657 416 GANALVTFAFSPLKDL 431 (480)
Q Consensus 416 ~g~~i~~~~~~~~~~~ 431 (480)
+|.+-+|.++|.++|.
T Consensus 566 lg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 566 FATIPAPILFGLLIDV 581 (633)
T ss_pred hcCCChhHHHhhhhhc
Confidence 7889999999999985
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=154.12 Aligned_cols=354 Identities=15% Similarity=0.141 Sum_probs=208.4
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELIL 129 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~ 129 (480)
++++..+|+-.|...+.....+....+...| .+++.++..++.+.|.....+-++++|++.|| +|.|..-++
T Consensus 43 ~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d-------~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii 115 (459)
T KOG4686|consen 43 FMALVFMCLLGFGSYFCYDAPGALQIDFKLD-------SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII 115 (459)
T ss_pred HHHHHHHHHhcccceeecCCchhhhhhhhcc-------cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence 4444556666677777777777767666666 88899999999999999999999999999996 698888887
Q ss_pred HHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHhH-----------------hHHhhhhhhh-------------hhh
Q 011657 130 AALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGL-----------------GGYGIGSLLV-------------DLV 176 (480)
Q Consensus 130 ~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~g~g~-----------------~g~~~g~~l~-------------~~~ 176 (480)
-++...+|.++.+. ++.+|.++++||+.|+|.-. ++.+.|-.+. +..
T Consensus 116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 77777788877664 68899999999999998766 2222222111 110
Q ss_pred hhhHHHHhchhHHHHHHHHHHhcccCchH------HHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Q 011657 177 AGWRYMYGASTPLAVIMGMGMWWLPASPR------WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT 250 (480)
Q Consensus 177 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (480)
.+.-.-++-...-.. +..+.+-|... -....+ -.++.|++.+.+-++...+
T Consensus 196 y~~~~~~~~~~ghT~---LG~~l~~~~~tc~~slical~lg--------~~D~rAerilh~e~g~~Ge------------ 252 (459)
T KOG4686|consen 196 YDTMGRMFPGVGHTL---LGLWLCFEVKTCKQSLICALSLG--------LSDDRAERILHLEEGFLGE------------ 252 (459)
T ss_pred HHHHHHhcccchHHH---HHHHHHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHhhhcCcccC------------
Confidence 011001110011111 11111111000 000000 0112222222221111110
Q ss_pred hhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHH
Q 011657 251 ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGL 329 (480)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 329 (480)
..+-.-..-++ +.+|.+.+.+.++....+ -+....|.+++ .+|+ ++..++.+.+.......+.+++
T Consensus 253 -------~pkLtdv~~f~-ppfw~~~iicv~yyva~f----PFi~lg~~fF~~rfGl-S~~~a~~i~s~vy~Isav~spv 319 (459)
T KOG4686|consen 253 -------EPKLTDVNTFY-PPFWVLVIICVLYYVAWF----PFITLGPMFFQKRFGL-SAVSAGNILSTVYGISAVLSPV 319 (459)
T ss_pred -------CcccccccccC-ccHHHHHHHHHHHHHHHH----HHhhhhHHHHHHhhCC-Chhhccchhhhhhhhhhhhhhh
Confidence 11111111122 234444444333333222 23334455554 5677 8889999999999999999999
Q ss_pred HHHHHhhhcCchHHHhhhHHHHHHH-HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHH
Q 011657 330 AVLVVERLGRRPLLLGGVSGIVISL-FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLS 408 (480)
Q Consensus 330 ~g~l~d~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 408 (480)
.|.++||+|++-..+.+..+..+.. ..+.+. ..+++.....+.+...... ...|..++.+.|+++.|++.|
T Consensus 320 fg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----~lsPy~~m~~lGLsysllA----cslWP~va~~vpE~qLGTayg 391 (459)
T KOG4686|consen 320 FGAISDKYGFNLWWVASACILTLLGHSGLFFT----FLSPYTSMTFLGLSYSLLA----CSLWPCVASLVPEEQLGTAYG 391 (459)
T ss_pred HHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----hccHHHHHHHHhhhHHHHH----HHHhhhhhhhCCHHHhcchHH
Confidence 9999999999877666554443332 222211 1234433332222222222 223456677889999999999
Q ss_pred HHHHHHHHHHHhHhhcchhhHHhhC-ccH---HHHHHHHHHHHHHHhcCCC
Q 011657 409 VAVLVNFGANALVTFAFSPLKDLLG-AGI---LFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 409 ~~~~~~~~g~~i~~~~~~~~~~~~g-~~~---~~~~~~~~~~~~~~~~~~~ 455 (480)
.++.++++|-++.|.+.|.+.|..| +.+ .|.+.+.+++.+..+.+.+
T Consensus 392 f~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 392 FIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999999999876 322 3445555566665555543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-19 Score=161.92 Aligned_cols=356 Identities=16% Similarity=0.141 Sum_probs=208.4
Q ss_pred ccccccccccccCCCCCCCccccCChhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCc
Q 011657 68 IGSTSCATISIESPTLSGISWYDLSSVE-IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD 146 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 146 (480)
+...+.+.|.+.+| +|+|..| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.+++++
T Consensus 42 R~n~s~a~p~L~~e-------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 42 RPGESFITPYLLTV-------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred hchHHHHHHHHHHH-------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888887 9999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhH-----------------------------hHHhhhhhhhh--hhhhhHHHHhchhH---HHHH
Q 011657 147 FIIMVVGRFVFGIGIGL-----------------------------GGYGIGSLLVD--LVAGWRYMYGASTP---LAVI 192 (480)
Q Consensus 147 ~~~l~~~r~l~G~g~g~-----------------------------~g~~~g~~l~~--~~~~wr~~f~~~~~---~~~~ 192 (480)
+..+.+.|++.|++.|. +|..+++.+.. ...|||+.+...-+ ...+
T Consensus 115 l~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~ 194 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTF 194 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 99999999999999998 33333333322 12388876554433 2333
Q ss_pred HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHh---hh
Q 011657 193 MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF---HG 269 (480)
Q Consensus 193 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 269 (480)
.++..+++|..++-+.-++.+.+ +.+.+ .+.....++. . . +..+..+.......+.++ +.
T Consensus 195 a~~~a~~LP~~~~sl~f~~~~~~-----~~~~~----~~~~~~~~~~----~--~--~~~~~~~~~~~~~~~~l~~~~~~ 257 (511)
T TIGR00806 195 SVFLALFLKRPKRSLFFNRLEDV-----RGALP----CELDQMVPGP----G--G--KLEDYLGTCRDSFLVRMLSELVT 257 (511)
T ss_pred HHHHHHhCCCCchhhhhcccccc-----ccccc----cccccCCCCC----c--c--ccchhhhhhhhHHHHHHHHHHHH
Confidence 55566778865543322220000 00000 0000000000 0 0 000000000001111111 11
Q ss_pred hhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHH
Q 011657 270 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSG 349 (480)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 349 (480)
-...+.++-..+.+....+++.-+..|...+.++..-..+..-|..-.+..+.+.+..+..|++-.++.+-..+.++.+.
T Consensus 258 ~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s 337 (511)
T TIGR00806 258 IYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVS 337 (511)
T ss_pred HhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 12223334444555555666667777877777766441222455666777777888888888885555332233333322
Q ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc----
Q 011657 350 IVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF---- 425 (480)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~---- 425 (480)
..-+.+++.. ...++.|...+..+++...+..... +...-++.....+.-|...|+++++..+-..+...++
T Consensus 338 ~~~~gll~~m---~~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~ 413 (511)
T TIGR00806 338 AIQAGLVFWM---SQSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKR 413 (511)
T ss_pred HHHHHHhhhh---hcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEccc
Confidence 2222222211 1245667777777777777766543 4335555555656668888888888766666555543
Q ss_pred hhhHH---hh-CccHHHHHHHHHHHHHHHh
Q 011657 426 SPLKD---LL-GAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 426 ~~~~~---~~-g~~~~~~~~~~~~~~~~~~ 451 (480)
|.-.+ .+ =|...|.+.+++.++..++
T Consensus 414 gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~~ 443 (511)
T TIGR00806 414 GLGLQVRKQFRIYSVYFLVLSIICFFGAGL 443 (511)
T ss_pred ccCCCceeEEEehhhHHHHHHHHHHHHHHH
Confidence 11111 11 1333556666655555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=171.93 Aligned_cols=351 Identities=15% Similarity=0.150 Sum_probs=188.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHhH---
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGL--- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~g~--- 163 (480)
+|.+..+.+++.+.+........+++|+++|| +|||+++.++.++++++.+++++++ +.+.++++|+++|+|.|.
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 89999999999988887777777899999999 5999999999999999999999875 566777889999999885
Q ss_pred ---------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHh
Q 011657 164 ---------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLC 210 (480)
Q Consensus 164 ---------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 210 (480)
+|+.+++++.+.. |||+.|++.++..++..+.+++.+ +++.++
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~~~~---~~~~~~ 207 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFAFCQ---RWVKQY 207 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHhH---HHhccC
Confidence 5666777766655 999999998765554333222221 111111
Q ss_pred ccccc---CchhhhHHHHHHH--H----HHHhCCCCCCCChhhHHHHH--H-hhhcccccccccHHHHhhhhhhhHHHHH
Q 011657 211 AMKRK---GDMQDLRESAISC--L----CRLRGQSIGDSAPTEVDEIL--T-ELSYVGEDKEVSLREVFHGKCLKALIIG 278 (480)
Q Consensus 211 ~~~~~---~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (480)
+.+++ .|..+....+... + ....... + ......... . ......... ...+.-+++... .+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~ 280 (500)
T PRK09584 208 GSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-E--IARMALGVVALGIVVIFGKEAF--AMKGAARRKMIV--AFI 280 (500)
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc-h--HHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHH--HHH
Confidence 10010 1111100000000 0 0000000 0 000000000 0 000000000 000111111111 111
Q ss_pred HHHHHHHHhhChhHHHHhHHHHHHh-----cC--C-CCCcchHHHHHHHHHHHHHHHHHHHHHHhhhc----CchHHHhh
Q 011657 279 AGLVLFQQITGQPSVLYYAASILQS-----AG--F-SAASDATRVSILLGLFKLIMTGLAVLVVERLG----RRPLLLGG 346 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g--~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g----~~~~~~~~ 346 (480)
.++.....+ ......+..+.. .. . .-.....++.+...+..++..++..++-+|.+ ..+.+.++
T Consensus 281 ~~~~~i~f~----~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 281 LMLEAIIFF----VLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHH----HHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 111111111 112222222211 10 0 01123556666777777777777655555554 44667778
Q ss_pred hHHHHHHHHHHHHHhhccC---CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhh
Q 011657 347 VSGIVISLFLLGSYYLFLD---DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 423 (480)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~ 423 (480)
+++.+++++.+........ ..+.+..+...++.+.......|....++.+..|++.||.++|+......+|..++..
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777654322111 1112234444444455555566788889999999999999999887776666666655
Q ss_pred cchhhH----------HhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 424 AFSPLK----------DLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 424 ~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
+.+... ...++...|...++++++..++.+.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 437 VANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 553211 1123556777777666555444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=173.38 Aligned_cols=336 Identities=12% Similarity=-0.019 Sum_probs=206.4
Q ss_pred hhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHH
Q 011657 58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELILAAL 132 (480)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~ 132 (480)
...++..|..........+.+.++ +|++..+++...+...+...+-.+ +|+++||++ ||+.++++.+
T Consensus 32 ~~~y~~qGl~~l~~~~~~~~l~~~-------lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 32 LQVLFVKGIAGLMRLPLSPMLTDD-------LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHhhHHHHhhhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence 334466666633444555555555 899999999999999999999666 999999998 7888888877
Q ss_pred HHH-HHHHHHHhcCchHHHH-HHHHHHHHHHhH------------------------------------hHHhhhhhhhh
Q 011657 133 LYL-VGALVTALAPDFIIMV-VGRFVFGIGIGL------------------------------------GGYGIGSLLVD 174 (480)
Q Consensus 133 ~~~-~~~~~~~~~~~~~~l~-~~r~l~G~g~g~------------------------------------~g~~~g~~l~~ 174 (480)
+.+ +.....+..++...+. +..++.+++.+. +|+.+++.+.+
T Consensus 104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 763 4433344445544444 478888888777 33333444444
Q ss_pred hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhc
Q 011657 175 LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSY 254 (480)
Q Consensus 175 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (480)
.. +||..|++.+++.++..+..++++|++.....+. .++... ..........+
T Consensus 184 ~~-~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~----------~~~~~~------------~~~~~~~~~~~---- 236 (468)
T TIGR00788 184 KT-LTRILFLITAALLLLQLFVSNLSKERRAFVRPRI----------GTYLEM------------NMALLTLGVLA---- 236 (468)
T ss_pred hc-CcchHHHHHHHHHHHHHHHHHhcccccccccccc----------cccchh------------hhhhhhhhHHH----
Confidence 44 8999999998888776666677787631000000 000000 00000000000
Q ss_pred ccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011657 255 VGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVV 334 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 334 (480)
..++.....+..++++..+..++..++.+. ..... ....+. ...+..|+ ++.+.|......+++.+++..+.+++.
T Consensus 237 ~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~~~~-~~~~f~-~~~~~lG~-s~~~~G~~~~~~~v~~i~g~~~~~~~~ 312 (468)
T TIGR00788 237 NVKVQILGLRGAIQLLEIAKPLIFIFLSYA-NLPGA-SGSVFC-ATTQCLPG-GPSFSGMSKVVGNLGSLCGVGGYDRFL 312 (468)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hcCCC-CceeEE-EEcccCCC-CcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000001123334454544443332222111 11111 111111 11235677 899999999999999999999999999
Q ss_pred hhhcCchHHHhhhHHHHHHHHHHHHHhhccC-----CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHH
Q 011657 335 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-----DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 409 (480)
Q Consensus 335 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 409 (480)
+|++.|+++.++.++.+++...........+ ...+.......+.....+..+.+. ..++.+..|++.+|+..++
T Consensus 313 ~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al 391 (468)
T TIGR00788 313 KTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFAL 391 (468)
T ss_pred hhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHH
Confidence 9999999998888877776644321100000 112222333333444445555555 4899999999999999999
Q ss_pred HHHHHHHHHHhHhhcchhhHHhhC
Q 011657 410 AVLVNFGANALVTFAFSPLKDLLG 433 (480)
Q Consensus 410 ~~~~~~~g~~i~~~~~~~~~~~~g 433 (480)
.+++.++|..+++.+.+.+.+..|
T Consensus 392 ~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 392 LASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999888
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=166.13 Aligned_cols=300 Identities=15% Similarity=0.046 Sum_probs=172.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhh-hHHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGR-RRELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (480)
+|++..++|.+..+..+.-++..|+.|.++| |+|| |+.++++.+..+++.++....++ +..+++..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 6698 55666788888887666644332 23444555555
Q ss_pred HHHHhH-------------------------------hHHhhhhhhh----------hhhhhhHHHHhchhHHHHHH-HH
Q 011657 158 GIGIGL-------------------------------GGYGIGSLLV----------DLVAGWRYMYGASTPLAVIM-GM 195 (480)
Q Consensus 158 G~g~g~-------------------------------~g~~~g~~l~----------~~~~~wr~~f~~~~~~~~~~-~~ 195 (480)
+++... +|..+.+.+. +...+|+....+.+++.++. .+
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 555444 1111111110 00114555555554444442 22
Q ss_pred HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 196 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 196 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
..+..+|.+.. .+. +..++++.+.+..++.+++++.++..
T Consensus 197 ~~~~~~e~~~~------------------------------------~~~----~~~~~~~~~~~~~~~~~~~n~~~~~l 236 (473)
T PRK10429 197 TLRNVHEVYSS------------------------------------DNQ----VSAEGSHLTLKDIVALIYKNDQLSCL 236 (473)
T ss_pred HHcCceecCCc------------------------------------ccc----ccccccCCCHHHHHHHHhcCHHHHHH
Confidence 22234443210 000 00000011112223344455444433
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 355 (480)
+....+... .......+.+++.+.... +....+.......++.+++.++.+++.||+|+|+.+..+..+..++.+
T Consensus 237 l~~~~~~~~----~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~ 311 (473)
T PRK10429 237 LGMALAYNI----ASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCG 311 (473)
T ss_pred HHHHHHHHH----HHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 333222222 222333344445544433 445556666677788899999999999999999998877776665554
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCC-------hhhhhhHHHHHHHHHHHHHHhHhhcchhh
Q 011657 356 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 428 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 428 (480)
.+.........+.+..++...+...+.+ ...+..+++.+|..+ .+..|...|...++..++..+++.+.|.+
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~l~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 312 VLLLMGLAAPHNALLIVIAGILLNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432211122223333333333333333 233455577888854 34456688999999999999999999999
Q ss_pred HHhhCc
Q 011657 429 KDLLGA 434 (480)
Q Consensus 429 ~~~~g~ 434 (480)
.+..|+
T Consensus 391 l~~~Gy 396 (473)
T PRK10429 391 LGLIGY 396 (473)
T ss_pred HHHcCC
Confidence 987776
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-19 Score=160.08 Aligned_cols=321 Identities=19% Similarity=0.183 Sum_probs=191.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH--HHHHHHHHHH-Hh----cCchH-HHHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA--LLYLVGALVT-AL----APDFI-IMVVGRFVFGIG 160 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~--~~~~~~~~~~-~~----~~~~~-~l~~~r~l~G~g 160 (480)
.|++..++|.+.++..+...+.+|+.|.++||+|.||-++..+ ++...+.... .+ ..|.+ ..+++-+..|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999666544332 2222222222 22 22322 223322222221
Q ss_pred H----hH------------------------hHHhhhhhhhhhhh--hhHHHHhchhHHHHHHHHHHhcc-cCchHHHHH
Q 011657 161 I----GL------------------------GGYGIGSLLVDLVA--GWRYMYGASTPLAVIMGMGMWWL-PASPRWLLL 209 (480)
Q Consensus 161 ~----g~------------------------~g~~~g~~l~~~~~--~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~ 209 (480)
. +. +|..++..+..... +-+..|++....+++..++.++. |+.++....
T Consensus 118 f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~ 197 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEV 197 (412)
T ss_dssp TTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-S
T ss_pred HcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhh
Confidence 1 11 44444444443211 34567777766666544443333 333210000
Q ss_pred hcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc---cHHHHhhhhhhhHHHHHHHHHHHHH
Q 011657 210 CAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV---SLREVFHGKCLKALIIGAGLVLFQQ 286 (480)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (480)
. + ....++++. ...+++|++++|...+........
T Consensus 198 ~----------------------------------------~-~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~- 235 (412)
T PF01306_consen 198 A----------------------------------------D-ALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI- 235 (412)
T ss_dssp S----------------------------------------T-TSSS------HHHHHHHTTSHHHHHHHHHHHHHHHH-
T ss_pred h----------------------------------------c-ccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHH-
Confidence 0 0 000111122 245667777766654433322221
Q ss_pred hhChhHHHHhHHHHHHhc----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhh
Q 011657 287 ITGQPSVLYYAASILQSA----GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYL 362 (480)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 362 (480)
+..+....+.|.... +. +....|...+...+.+++.-.+..++.+|+|.|+.++++..++.+=..+.++
T Consensus 236 ---Y~vfdqqf~~y~~~~f~~~~~-g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~--- 308 (412)
T PF01306_consen 236 ---YDVFDQQFPIYFASFFQSAGQ-GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF--- 308 (412)
T ss_dssp ---HHHHHHHHHHHHHHTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred ---HHHHHHHHHHHHHHHhccccc-ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh---
Confidence 223333334444332 23 3356788899999999999999999999999999999999888888887765
Q ss_pred ccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHH-HHHHHHHHHhHhhcchhhHHhhCccHHHHHH
Q 011657 363 FLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVA-VLVNFGANALVTFAFSPLKDLLGAGILFYAF 441 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~ 441 (480)
..+++.....-.+-..-...... ...-|+.+.+|++..++...+. +...+++.++.+.+.|.+.|+.|++..++++
T Consensus 309 --~~~~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylim 385 (412)
T PF01306_consen 309 --ATNPWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIM 385 (412)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHH
Confidence 34555544444444444444333 3347999999999999999886 5668999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCC
Q 011657 442 GVIAVLSLAFIFXXXXXXXX 461 (480)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~ 461 (480)
+.+.++..++..+.+++.++
T Consensus 386 g~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 386 GLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHheeeecCCCc
Confidence 98887777766665554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=159.90 Aligned_cols=293 Identities=16% Similarity=0.048 Sum_probs=175.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhh-HHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRR-RELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (480)
+|++..++|.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++.++....++ +..+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 7874 5566777888777766655553 34455555555
Q ss_pred HHHHhH-------------------------------hHHhhhhhh----hh------hhhhhHHHHhchhHHHHHHHHH
Q 011657 158 GIGIGL-------------------------------GGYGIGSLL----VD------LVAGWRYMYGASTPLAVIMGMG 196 (480)
Q Consensus 158 G~g~g~-------------------------------~g~~~g~~l----~~------~~~~wr~~f~~~~~~~~~~~~~ 196 (480)
+.+... +|..+++.+ .. ...+|+..+.+.++++++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 554443 222222221 11 1236777777766666553333
Q ss_pred -HhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 197 -MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 197 -~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
.+..+|.++. . +.++.+.....+++++++.++..
T Consensus 200 ~~~~~~e~~~~-------------------------------~--------------~~~~~~~~~~~~~~~~n~~~~~l 234 (444)
T PRK09669 200 CFFMTKERYTP-------------------------------E--------------VDNSSSVWKDLKLLLGNSQWRIM 234 (444)
T ss_pred HhCCeEEecCC-------------------------------C--------------CcCCCCHHHHHHHHhCCchHHHH
Confidence 3333432100 0 00011122346667777776665
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 355 (480)
.....+...... ......+++.+.... +............+..+++.++.+++.||+|+|+.+..+..+..+...
T Consensus 235 ~~~~~~~~~~~~----~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 235 FIFNVVLLTAVV----TRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHH----HHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 444333322221 112222333332222 333444555566677888889999999999999998877665544333
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCC-------hhhhhhHHHHHHHHHHHHHHhHhhcchhh
Q 011657 356 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 428 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 428 (480)
.+.. ...++.+..++..++.+.+ .....+..+++++|..+ .+..|...|..+++..+|.++++.+.|.+
T Consensus 310 ~~~~---~~~~~~~~~~~~~~i~g~~-~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 310 LIFF---IPPSNVWLIFALNILFNFI-QNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHH---hCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1122333333333333333 33444667788888774 33456778899999999999999999999
Q ss_pred HHhhCcc
Q 011657 429 KDLLGAG 435 (480)
Q Consensus 429 ~~~~g~~ 435 (480)
.+..|+.
T Consensus 386 l~~~Gy~ 392 (444)
T PRK09669 386 LAWVDYV 392 (444)
T ss_pred HHHcCCC
Confidence 9987763
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.9e-17 Score=151.88 Aligned_cols=337 Identities=17% Similarity=0.084 Sum_probs=198.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHH-HHHHHHHHHHHHhcCchHHHHH-----------
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRELILA-ALLYLVGALVTALAPDFIIMVV----------- 152 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----------- 152 (480)
+|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++.++++++..++.
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 8999999999999999999999999999999 59999998874 6666677777777766432211
Q ss_pred -HHHHHHH-----HHhH------------------------------------hHHhhhhhhh--hhh------------
Q 011657 153 -GRFVFGI-----GIGL------------------------------------GGYGIGSLLV--DLV------------ 176 (480)
Q Consensus 153 -~r~l~G~-----g~g~------------------------------------~g~~~g~~l~--~~~------------ 176 (480)
.+++.|+ +... +|+.+|++.. ...
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 2222222 2221 4444444431 100
Q ss_pred hhhHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcc
Q 011657 177 AGWRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 255 (480)
Q Consensus 177 ~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (480)
.+.|+.|++.++..++ ..+..+..+|.|.... + + ..++ ..+ +.+
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~-----~---~~~~------~~~-------------------~~~ 238 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENPLIGS--D-----D---FINS------EAA-------------------PPS 238 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--c-----c---chhh------hcc-------------------ccc
Confidence 1568888888887776 5556667888652100 0 0 0000 000 000
Q ss_pred cccccccHHHHhhhh-hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-c-CCCCCc-----c----hHHHHHHHHHHH
Q 011657 256 GEDKEVSLREVFHGK-CLKALIIGAGLVLFQQITGQPSVLYYAASILQS-A-GFSAAS-----D----ATRVSILLGLFK 323 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~~-----~----~~~~~~~~~~~~ 323 (480)
+......++++++.- ...+.+...++..++.+.++..+.+|.+.+..+ . +..++. + ..+......+..
T Consensus 239 ~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~ 318 (477)
T TIGR01301 239 KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVL 318 (477)
T ss_pred ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 001112234444331 112222222222333333334445555555432 2 221111 1 223445555666
Q ss_pred HHHHHHHHHHHhhhcC-chHHHhhhHHHHHHHHHHHHHhhccCC--c--------------hhHHHHHHHHHHHHHhccc
Q 011657 324 LIMTGLAVLVVERLGR-RPLLLGGVSGIVISLFLLGSYYLFLDD--V--------------PAVAVVALLLYVGCYQLSF 386 (480)
Q Consensus 324 ~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~ 386 (480)
.+.+++..++.+|+|+ |+....+.++.++++....+.....++ . .+..+..+...+.... ..
T Consensus 319 ~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A-~~ 397 (477)
T TIGR01301 319 GITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA-IT 397 (477)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH-HH
Confidence 6777778889999985 677678877777777766543211000 0 1333333333443333 34
Q ss_pred ccccceeecccCCh--hhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC--ccHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 011657 387 GPIGWLMISEVFPL--RLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG--AGILFYAFGVIAVLSLAFIFXXXXXXXX 461 (480)
Q Consensus 387 ~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (480)
..++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++..+++++..++.+|+.+.
T Consensus 398 ~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 398 YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 46778899998884 456999999999999999999988888776666 3446777777788888888887877653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=158.34 Aligned_cols=165 Identities=18% Similarity=0.032 Sum_probs=103.7
Q ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCch
Q 011657 262 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP 341 (480)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 341 (480)
.++.+++++.+....+..++..... .......+++.++....+....++......++.+++.++.+++.||+|+|+
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~ 295 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLIST----FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN 295 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH----HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 3566777776655544433333322 233344555555432214444444444446677889999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChh-------hhhhHHHHHHHHH
Q 011657 342 LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR-------LRGRGLSVAVLVN 414 (480)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~ 414 (480)
.+..+..+..++.+.+.+. ...+.+.......+...+.+ ...+..+++..|..|.+ .+|...|+.++..
T Consensus 296 ~~~~g~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~g~G~~-~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~ 371 (448)
T PRK09848 296 TFLIGALLGTCGYLLFFWV---SVWSLPVALVALAIASIGQG-VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR 371 (448)
T ss_pred HHHHHHHHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence 9998888777776655421 11222322222333333333 23345557777777643 4699999999999
Q ss_pred HHHHHhHhhcchhhHHhhCc
Q 011657 415 FGANALVTFAFSPLKDLLGA 434 (480)
Q Consensus 415 ~~g~~i~~~~~~~~~~~~g~ 434 (480)
.+|..+++.+.+.+.+..|+
T Consensus 372 klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 372 KCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998887665
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-16 Score=141.49 Aligned_cols=363 Identities=15% Similarity=0.124 Sum_probs=223.7
Q ss_pred hhHHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 011657 49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI 128 (480)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 128 (480)
+.|+++++.++-.+..++.-..+++.......- ++ +....-|+.-+|++.+....+++-|+.||+|-|..+.
T Consensus 42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~-------Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF-------YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred hHhHHHHHHHHHHhcCcchheeehhHHHHHHHH-------hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 344444555555566666544445544444332 67 7778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC------chH--HHHHHHHHHHHHHhH------------------------------hHHhhh-
Q 011657 129 LAALLYLVGALVTALAP------DFI--IMVVGRFVFGIGIGL------------------------------GGYGIG- 169 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~g~g~------------------------------~g~~~g- 169 (480)
++..+.++|+.+-..+. .++ ....+..+.+.+.-. +|..+|
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 99999999999877753 234 555666666665544 333333
Q ss_pred ---hhhhhh-----hhhhHH--HHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCC
Q 011657 170 ---SLLVDL-----VAGWRY--MYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG 238 (480)
Q Consensus 170 ---~~l~~~-----~~~wr~--~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (480)
.++... ...|.. .|+...+++.+ +.+..+..+|.|+.-.. ..+.
T Consensus 194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----------~s~~-------------- 248 (480)
T KOG2563|consen 194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----------ASQA-------------- 248 (480)
T ss_pred hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----------hhHh--------------
Confidence 333322 125544 35544444444 33333333443321000 0000
Q ss_pred CCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHH
Q 011657 239 DSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSIL 318 (480)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (480)
. ..+.+-..+.++.++++.+....+...+... .++.....+...+...|+ +...+|.....
T Consensus 249 ----------~----~~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY-~~~~aG~ig~l 309 (480)
T KOG2563|consen 249 ----------A----LQDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGY-EGVFAGYIGAL 309 (480)
T ss_pred ----------h----hhcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccC-CccccchhHHH
Confidence 0 0011234456677777665544444333333 233444444434455566 56789999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-chHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeeccc
Q 011657 319 LGLFKLIMTGLAVLVVERLGR-RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV 397 (480)
Q Consensus 319 ~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..++++++..+.|.+.||.+. |.+.+.......++...+.. ... .....+.+...+...+.++.+..|+..-+..|.
T Consensus 310 ~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~-~t~-~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~ 387 (480)
T KOG2563|consen 310 MIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLT-CTL-FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVET 387 (480)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhc-cCCceEehhhhHHHHHHhhcCCCCcceeeeeee
Confidence 999999999999999999875 33344333333333221111 111 122223333444455566667778888899998
Q ss_pred CChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC----ccHHHHHHHHHHHHHHHhcCCCCCCCCCChhh
Q 011657 398 FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG----AGILFYAFGVIAVLSLAFIFXXXXXXXXSFQR 465 (480)
Q Consensus 398 ~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (480)
.-|..-++..|+.+..+++.+.+-..+.+...+..+ +...-+.....++++.++..+++++.++++.+
T Consensus 388 TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 388 TYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred ccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 766778899999999999999999999998888776 44445555666666666666656555544433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=151.49 Aligned_cols=295 Identities=18% Similarity=0.192 Sum_probs=200.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHH-HHHHHHHHHHHHHHHHhc-C-c------hHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRE-LILAALLYLVGALVTALA-P-D------FIIMVVGRF 155 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~-~------~~~l~~~r~ 155 (480)
+++++...|.+..+..+..++..|+.|.++| |+||||. ++++.+..+++.+++... + + ...+.+..+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 7999999999999999999999999999999 8997765 456888888888887766 4 1 233455666
Q ss_pred HHHHHHhH-------------------------------hHHhhhhhh----hhh-----h-hhhHHHHhchhHHHHHH-
Q 011657 156 VFGIGIGL-------------------------------GGYGIGSLL----VDL-----V-AGWRYMYGASTPLAVIM- 193 (480)
Q Consensus 156 l~G~g~g~-------------------------------~g~~~g~~l----~~~-----~-~~wr~~f~~~~~~~~~~- 193 (480)
+..++... +|..+.+.+ ... . .+|++..++.+++.++.
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 66666665 222221111 111 1 17999999888888874
Q ss_pred HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhh
Q 011657 194 GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK 273 (480)
Q Consensus 194 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (480)
.+..+..+|.++. .+.+.++.+-+..++++++++.++
T Consensus 192 ~i~~~~~ke~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~nr~~~ 228 (428)
T PF13347_consen 192 LITFFFVKERSVE-------------------------------------------VTEQEKKISLRDSLRSLFRNRPFR 228 (428)
T ss_pred hhhhheeeecccc-------------------------------------------ccccccccccccchhhhcccchHH
Confidence 4455556762110 000001223345577788887766
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHH
Q 011657 274 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 353 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 353 (480)
..+....+..+... ......+++.+..-. ++...+.......+..+++.++.++++||+|+|+.+..+..+.+++
T Consensus 229 ~l~~~~~~~~~~~~----~~~~~~~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 229 ILLLAFFLQWLAFA----LMNTFLPYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG 303 (428)
T ss_pred HHHHHHHHHHhhhh----hhhhHHHHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence 65555544444332 333344444444333 3456777788889999999999999999999999999999988888
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCCh-------hhhhhHHHHHHHHHHHHHHhHhhcch
Q 011657 354 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL-------RLRGRGLSVAVLVNFGANALVTFAFS 426 (480)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~~g~~i~~~~~~ 426 (480)
.+++.+.. ..+.+..++...+.+.+. .......+++.+|..+. +..|...|+.++...++..+++.+.+
T Consensus 304 ~~~~~~~~---~~~~~~~~i~~~l~gi~~-~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 304 FLLLFFLG---PGSPWLVLILFILAGIGY-GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHHHHH---hhhHHHHHHHHHHhHhhh-cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 77765531 133444444444444443 44446777899988763 44688899999999999999999999
Q ss_pred hhHHhhCcc
Q 011657 427 PLKDLLGAG 435 (480)
Q Consensus 427 ~~~~~~g~~ 435 (480)
.+.+..|+.
T Consensus 380 ~~l~~~Gy~ 388 (428)
T PF13347_consen 380 LLLALVGYD 388 (428)
T ss_pred HHHHHhCcC
Confidence 998876654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=146.23 Aligned_cols=291 Identities=12% Similarity=0.050 Sum_probs=164.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHH-HHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRRE-LILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (480)
+|+++..+|.+..+.-+--++.-|+.|.++|| +||||. ++++.+..+++.+++-..++ ...+.+.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 79999999999999999999999999999995 798655 55677888888777655553 23444555555
Q ss_pred HHHHhH-------------------------------hHHhhhhhhh----hh------hhhhHHHHhchhHHHHHHHHH
Q 011657 158 GIGIGL-------------------------------GGYGIGSLLV----DL------VAGWRYMYGASTPLAVIMGMG 196 (480)
Q Consensus 158 G~g~g~-------------------------------~g~~~g~~l~----~~------~~~wr~~f~~~~~~~~~~~~~ 196 (480)
.++... +|..+++.+. .. ..+|+....+.+++.++..+.
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 655554 2222222221 11 125666666666555543332
Q ss_pred -HhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 197 -MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 197 -~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
....+|.++. +.++.+.+..++..++++.++..
T Consensus 200 ~~~~~kE~~~~----------------------------------------------~~~~~~~~~~l~~~~~Nk~~~~l 233 (460)
T PRK11462 200 CFFTTKERVEA----------------------------------------------PPTTTSMREDLRDIWQNDQWRIV 233 (460)
T ss_pred HHhcceeccCC----------------------------------------------CccCCCHHHHHHHHhCChHHHHH
Confidence 2233433110 00000112234556666655544
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 355 (480)
.....+....... ......++.+.... +....+.......++.+++.+++++++||+++|+.+..+..+..+...
T Consensus 234 ~~~~~~~~~~~~~----~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 234 GLLTIFNILAVCV----RGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHH----HHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3333333222221 11222222222222 333445566777888899999999999999999887654443333222
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCC-------hhhhhhHHHHHHHHHHHHHHhHhhcchhh
Q 011657 356 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 428 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 428 (480)
++.+ .+..+.....+..++.+ .......++.+++..|..+ .+..|...+.......+|.++++.+.|.+
T Consensus 309 ~~~~---~~~~~~~~~~~~~~l~g-~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 309 AMFF---VPMQASITMFVFIFVIG-VLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHH---hchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11222222222222222 2223334454566666655 33345556777788999999999999998
Q ss_pred HHhhCc
Q 011657 429 KDLLGA 434 (480)
Q Consensus 429 ~~~~g~ 434 (480)
.+..|+
T Consensus 385 L~~~Gy 390 (460)
T PRK11462 385 LAYGGY 390 (460)
T ss_pred HHHcCC
Confidence 887665
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-15 Score=140.00 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=125.3
Q ss_pred HHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc--hHHHhhhHHHHH-HHHHH
Q 011657 282 VLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR--PLLLGGVSGIVI-SLFLL 357 (480)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~-~~~~~ 357 (480)
.++...-+.+.+......+.. ..|+ +..+.........+.+++|.++.+++.||+|.| +++..+.+...+ +...+
T Consensus 289 a~~l~~dg~~ti~~~~~i~a~~~lg~-s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~ 367 (477)
T PF11700_consen 289 AYFLYSDGVNTIISFAGIYATEVLGM-STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGL 367 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence 333333444555555555555 6788 888999999999999999999999999999998 676665555422 22221
Q ss_pred H-HHhhc-cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-c
Q 011657 358 G-SYYLF-LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-A 434 (480)
Q Consensus 358 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~ 434 (480)
. +.... ...+.+. +..+.++.+.+.++..+..-++.+|+.|+++.+...|++...+...+.+||.++|.+.+..| .
T Consensus 368 ~G~~~~~~g~~~~~~-f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~ 446 (477)
T PF11700_consen 368 FGFWPSFFGLKSPWE-FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ 446 (477)
T ss_pred HHhhhcccCcccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1 00000 1223333 33334444555555566777899999999999999999999999999999999999999987 6
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 011657 435 GILFYAFGVIAVLSLAFIFXXXXXXXX 461 (480)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (480)
+..+....++.+++.++.++ .+..|+
T Consensus 447 r~g~~~l~~lf~~gl~ll~~-v~~~~g 472 (477)
T PF11700_consen 447 RYGFLFLLVLFLIGLILLFF-VDVEKG 472 (477)
T ss_pred hhHHHHHHHHHHHHHHHHhh-ccchhh
Confidence 77888888888888877654 443333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=134.54 Aligned_cols=297 Identities=20% Similarity=0.152 Sum_probs=189.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhH-HHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRR-ELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (480)
+|+++..+|.+..+.-+--++.-|+.|.+.|| +||+| .++.+.+..++.+.++-.+++ ....++..++.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 89999999999999999999999999999994 78755 566788999999998888874 34556667777
Q ss_pred HHHHhH---------------------------hHHhhhhhhh-------------h-hhhhhHHHHhchhHHHHHHHH-
Q 011657 158 GIGIGL---------------------------GGYGIGSLLV-------------D-LVAGWRYMYGASTPLAVIMGM- 195 (480)
Q Consensus 158 G~g~g~---------------------------~g~~~g~~l~-------------~-~~~~wr~~f~~~~~~~~~~~~- 195 (480)
+++... .+..+|.++. + ...||+..-.+.++++.+..+
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 777776 1112221111 1 123677666666666665333
Q ss_pred HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 196 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 196 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
+++-.+|.+.. .+ . ..+..+.+.+..+..+++++.++..
T Consensus 203 ~~~~v~ER~~~---~~-------------------------~-------------~~~~~~~~~~~~~~~~~~Nrp~~~~ 241 (467)
T COG2211 203 CFFNVKERVVE---TQ-------------------------P-------------TKTGVKLKLKDSFLLIFKNRPLLLL 241 (467)
T ss_pred HHHHhhcccCc---cc-------------------------c-------------CcccccccHHHHHHHHHccchHHHH
Confidence 33334554310 00 0 0000011112223345666655544
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 354 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 354 (480)
.+...+.+ ...+.......+|.+. .|. +.............+.+++.++..++.+|+|+|+++..+.++.+++.
T Consensus 242 l~~~l~~~----~~~~i~~s~~~yy~~y~lg~-~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 242 LLMNLLLF----IAFNIRGSIMVYYVTYVLGD-PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHH----HHHHHHhhhhheeEEEEcCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 44222222 2223333333444433 233 45556667777777777779999999999999999999988888888
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccC-------ChhhhhhHHHHHHHHHHHHHHhHhhcchh
Q 011657 355 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF-------PLRLRGRGLSVAVLVNFGANALVTFAFSP 427 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 427 (480)
+++.+. ..++....++..+..+.......++.|++++|.. ..+..|...|...++..+|.+++..+.|+
T Consensus 317 ~~~~f~----~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 317 LLLYFT----PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHhh----cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776542 2233333333333333344445678888988875 33566788899999999999999999999
Q ss_pred hHHhhCcc
Q 011657 428 LKDLLGAG 435 (480)
Q Consensus 428 ~~~~~g~~ 435 (480)
+.+..|+.
T Consensus 393 ~L~~~Gyv 400 (467)
T COG2211 393 ILGAIGYV 400 (467)
T ss_pred HHHHcCCC
Confidence 99877643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=137.83 Aligned_cols=323 Identities=14% Similarity=0.074 Sum_probs=168.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHhH---
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGL--- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~g~--- 163 (480)
+|.+..+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.++.+... +...+.++..+.++|.|.
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 799999999999999999999999999999999 999999999999999988777643 223333333333333333
Q ss_pred ---------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHh
Q 011657 164 ---------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLC 210 (480)
Q Consensus 164 ---------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 210 (480)
++|.+.+.+.+.. |||+.|.+.++..++.++.+++..+. +...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~~~~~---l~~~ 195 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLCGNRH---FTHT 195 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHhhhh---hccC
Confidence 4455555554444 99999998766444433333222111 1010
Q ss_pred -cccccCchhhhHHHHHH------H-------HHHHhCCCCCCCChhhHH--HHH--HhhhcccccccccHHHHhhhhhh
Q 011657 211 -AMKRKGDMQDLRESAIS------C-------LCRLRGQSIGDSAPTEVD--EIL--TELSYVGEDKEVSLREVFHGKCL 272 (480)
Q Consensus 211 -~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~ 272 (480)
+.++++.. ++ +.... . +....-.+ .. ...... ... .-.-..... + .+...+
T Consensus 196 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~------~-~~~~er 264 (493)
T PRK15462 196 RGVNKKVLR-AT-NFLLPNWGWLLVLLVATPALITVLFWK-EW-SVYALIVATIIGLGVLAKIYRK------A-ENQKQR 264 (493)
T ss_pred CCCCCCCch-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHh------c-CCHHHH
Confidence 00011110 00 00000 0 00000000 00 000000 000 000000000 0 000011
Q ss_pred hHH--HHHHHH----HHHHHhhChhHHHHhHHHHHHh--cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcC--ch-
Q 011657 273 KAL--IIGAGL----VLFQQITGQPSVLYYAASILQS--AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR--RP- 341 (480)
Q Consensus 273 ~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~- 341 (480)
+++ ++.+.+ ++.........++.|.....+. .|+ .-.+.+..++..+..++..++..++-.|..+ |.
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~--~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~ 342 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGY--TVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTV 342 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcce--eeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 111 111111 1111111111222222221111 122 2346677788888888888887777666632 21
Q ss_pred ----HHHhhhHHHHHHHHHHHHHhhccC---CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHH
Q 011657 342 ----LLLGGVSGIVISLFLLGSYYLFLD---DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN 414 (480)
Q Consensus 342 ----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 414 (480)
-..+++++++++++.+.+...... ..+.++++...++....-....|+..+.++++.|++.+|..+|+.....
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~ 422 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS 422 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 145677777777766654222111 1233445555555566667778999999999999999999999986643
Q ss_pred -HHHHHhHhhcchhh
Q 011657 415 -FGANALVTFAFSPL 428 (480)
Q Consensus 415 -~~g~~i~~~~~~~~ 428 (480)
.++..++..+.+..
T Consensus 423 ~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 423 GAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHh
Confidence 56666555554433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=131.47 Aligned_cols=145 Identities=13% Similarity=0.041 Sum_probs=103.4
Q ss_pred hhHHHHhHHHHHHh---cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCC
Q 011657 290 QPSVLYYAASILQS---AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDD 366 (480)
Q Consensus 290 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (480)
......|.+.|+.+ .|. ++.+.+...+....+.++|+++.+++.||+++|+.+..+..+..++.+++.. .+
T Consensus 156 e~~~~~w~~~yl~~~~~~g~-s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~ 229 (310)
T TIGR01272 156 EVSAGSFLVNFLSDPHALGL-PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----TH 229 (310)
T ss_pred HHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cC
Confidence 34566677888764 366 8889999999999999999999999999999998887777666665543322 11
Q ss_pred chhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHH
Q 011657 367 VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 444 (480)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 444 (480)
. ........+.+ .+.....|...+...+..|+ +.+++.++. ....+|+++.|.+.|.+.|..|.+..+++...+
T Consensus 230 ~-~~~~~~~~l~g-~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 230 G-YVAMWFVLALG-LFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred C-HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2 22222333333 33334456666778887774 456677775 567899999999999999999988877754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-14 Score=125.60 Aligned_cols=314 Identities=16% Similarity=0.154 Sum_probs=193.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcCc--hHHHH-HHHHHHHHHHhH----
Q 011657 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRE-LILAALLYLVGALVTALAPD--FIIMV-VGRFVFGIGIGL---- 163 (480)
Q Consensus 92 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~~~--~~~l~-~~r~l~G~g~g~---- 163 (480)
+.+..+...++..+..++.+|+.|.++|+.|+||. +-+...+..++.++..++++ ++.+. +.-.+..++...
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 55678889999999999999999999999996655 44566666666666777665 44443 445566665554
Q ss_pred --------------------------hHHhhhhhh------hh---------------hhhhhHHHHhchhHHHHH-HHH
Q 011657 164 --------------------------GGYGIGSLL------VD---------------LVAGWRYMYGASTPLAVI-MGM 195 (480)
Q Consensus 164 --------------------------~g~~~g~~l------~~---------------~~~~wr~~f~~~~~~~~~-~~~ 195 (480)
+|..+.-++ .. ...+=|..+.+.++..++ .+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 111100000 00 011334455555554444 233
Q ss_pred HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHH
Q 011657 196 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 275 (480)
Q Consensus 196 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (480)
.++..++.++-. +.......+. -++-..+++++.+++.....
T Consensus 216 m~~~v~~~~~~~-------------------------------~~~~~~l~~g-------~k~L~~t~k~i~~~~~i~~F 257 (438)
T COG2270 216 MILNVHDAEKIS-------------------------------SPPPTALRNG-------FKELKSTFKEIRGRKNLVLF 257 (438)
T ss_pred HHhccccccccc-------------------------------ccchHHHHHH-------HHHHHHHHHHHhcccchHHH
Confidence 333344332100 0000000000 01112234455444433333
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 354 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 354 (480)
++. .+...-+.+.+......+-. ..|. +..+..+......+..++|+++.|++.||+|.|+++..+.++..+.+
T Consensus 258 LiA----~~~~~DGv~til~~~~~fg~~~~gl-s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 258 LIA----RFFYIDGVNTILAMGGVFGAADLGL-SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred HHH----HHHHHhhHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 333 22333345566666666665 7788 88999999999999999999999999999999999888887776655
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCc
Q 011657 355 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGA 434 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~ 434 (480)
+.... ...... +..+.++.+.+.++.....=++..+.+|+++-+...|+++..+...+..+|.+.+.+.+..|-
T Consensus 333 ~~~~~-----~~~~~~-f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 333 LYLIF-----LEGELD-FWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHHH-----ccccHH-HHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 54432 122222 222222333333334455568999999999999999999999999999999999999988774
Q ss_pred -cHHHHHHHHHHHHHHHhcCC
Q 011657 435 -GILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 435 -~~~~~~~~~~~~~~~~~~~~ 454 (480)
+..+....++.+++.++.+.
T Consensus 407 ~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 407 SRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred hhhHHHHHHHHHHhhHhhEEe
Confidence 44555556666666665544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=125.95 Aligned_cols=360 Identities=16% Similarity=0.106 Sum_probs=216.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHhH--
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGL-- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~-- 163 (480)
+|+++++..-+.+.|..-.-+..+++|+++||+ |+|+.++.|.+++.+|.++.+.+. +...++++-.+.++|.|.
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 679999999999999988889999999999997 999999999999999999999984 789999999999999998
Q ss_pred ------------------------------hHHhh----hhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHH
Q 011657 164 ------------------------------GGYGI----GSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 209 (480)
Q Consensus 164 ------------------------------~g~~~----g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 209 (480)
+|..+ -+.+.+.. +|...|...++-..+.++..+..+.. ...
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~r~---~~~ 211 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGRRH---VKG 211 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHccch---hcC
Confidence 44444 44444444 89999988887766655555444321 111
Q ss_pred hcccccCchhhhHHHHHHHHH----HHhCCC-CCCCChhhHHHHHH-----------hhhcccccccccHHHHhhhhhhh
Q 011657 210 CAMKRKGDMQDLRESAISCLC----RLRGQS-IGDSAPTEVDEILT-----------ELSYVGEDKEVSLREVFHGKCLK 273 (480)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 273 (480)
....++.... +..+...... ...... .............. ......++.....+++ ...-
T Consensus 212 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~---~~~~ 287 (498)
T COG3104 212 IGGVPDPNPL-SFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRL---LAAI 287 (498)
T ss_pred CCCCCCccch-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH---HHHH
Confidence 1100000000 0011100000 000000 00000000000000 0000000000111111 1111
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc-------hHHHhh
Q 011657 274 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR-------PLLLGG 346 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~ 346 (480)
++++...+++...-.....++.|.....+...+.-.-...+.-+...+.-++..++..++..|.+++ .-..++
T Consensus 288 ~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalG 367 (498)
T COG3104 288 PLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALG 367 (498)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHH
Confidence 2333333344444344445566655544332111234566777888888888888888888885443 123455
Q ss_pred hHHHHHHHHHHHHH--hhc--cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 347 VSGIVISLFLLGSY--YLF--LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 347 ~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
+.++..+++++... ... ....+.++++...++....-....|+..+++....|+...+..+++.......+..++.
T Consensus 368 l~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g 447 (498)
T COG3104 368 LILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG 447 (498)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666665543 111 22345566666667777777778889999999999999999999999998888888888
Q ss_pred hcchh------hHHhhCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 423 FAFSP------LKDLLGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 423 ~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
.+.+. ..+.......|+..+...++..+..+...
T Consensus 448 ~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 448 QVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred eecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 87773 33444555678887777776666655433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=139.12 Aligned_cols=361 Identities=15% Similarity=0.131 Sum_probs=198.3
Q ss_pred CCcccchhhhHHhHHHHhhhhhccccccccccccc-ccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011657 41 SPENYSVSAAILPFLFPALGGLLYGYDIGSTSCAT-ISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119 (480)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d 119 (480)
++.+.+|+..++..+..+ +.+.+.+++.+.. |.+++- +.+.+.+..|++.++..++.+++++++|+...
T Consensus 27 ~~~~t~wrsi~l~~~~sf----l~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~ 96 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSF----LVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSN 96 (488)
T ss_pred cccCCchHhHHHHHHHHH----HHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhccccc
Confidence 445667888887755554 4444544443332 333321 05678889999999999999999999999999
Q ss_pred hhhh-hHHHHHHHHHHHHHHHHH-Hh---cC-chHHHHHHHHHHHHHHhH------------------------------
Q 011657 120 ILGR-RRELILAALLYLVGALVT-AL---AP-DFIIMVVGRFVFGIGIGL------------------------------ 163 (480)
Q Consensus 120 r~Gr-r~~~~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~g~g~------------------------------ 163 (480)
|.+. |+.++.|.++..+|+++. ++ .+ ..+.++++|++.|+|.|.
T Consensus 97 k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl 176 (488)
T KOG2325|consen 97 KTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVL 176 (488)
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHH
Confidence 9997 889999999999999988 43 23 578899999999999777
Q ss_pred ---hHHhhhhhhhhhh-hh-----------hHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHH
Q 011657 164 ---GGYGIGSLLVDLV-AG-----------WRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAIS 227 (480)
Q Consensus 164 ---~g~~~g~~l~~~~-~~-----------wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (480)
+||.++..+.... .| +..+-|+.+++.++ .+++..+++|.++-...++
T Consensus 177 g~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~---------------- 240 (488)
T KOG2325|consen 177 GIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKK---------------- 240 (488)
T ss_pred HHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccc----------------
Confidence 5555555554211 11 23455666666666 4455556777654111000
Q ss_pred HHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCC
Q 011657 228 CLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFS 307 (480)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 307 (480)
.+.+ ++ .+...++.+.. +..+...+.+....+...+.....-..+.+.....++..
T Consensus 241 -------------~~~~-~~-~~~~~~~~~~~---------~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~ 296 (488)
T KOG2325|consen 241 -------------KRSV-EE-EKSDIEKVKKP---------KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWT 296 (488)
T ss_pred -------------cccc-hh-hccchhhhccC---------ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccc
Confidence 0000 00 00000000000 111222222222333332222222333444444455553
Q ss_pred CCcchHHHHHHHHHHHHHHHHH---HHHHH-hhhcCchHHHhhhHHHHHHHHHHHHHhhccC------------------
Q 011657 308 AASDATRVSILLGLFKLIMTGL---AVLVV-ERLGRRPLLLGGVSGIVISLFLLGSYYLFLD------------------ 365 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~---~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 365 (480)
+...+........+.+++...+ ..... -++.+|..+..+++....+..+....+....
T Consensus 297 ~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y 376 (488)
T KOG2325|consen 297 GSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEY 376 (488)
T ss_pred cchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccc
Confidence 3333333333344444433332 22222 2234455555554444443333221111100
Q ss_pred -------CchhHHHHHHHHHHHHHhcc-cccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHH
Q 011657 366 -------DVPAVAVVALLLYVGCYQLS-FGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGIL 437 (480)
Q Consensus 366 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~ 437 (480)
..+...+.....+..+.+.. ......++-+|...++.++++.+++......+..++|.+...+....|++++
T Consensus 377 ~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v 456 (488)
T KOG2325|consen 377 SWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPV 456 (488)
T ss_pred hhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHH
Confidence 00111111111111111111 1122336778888999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHh
Q 011657 438 FYAFGVIAVLSLAF 451 (480)
Q Consensus 438 ~~~~~~~~~~~~~~ 451 (480)
+.+.++..++....
T Consensus 457 ~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 457 WIILLCLLLVVAAL 470 (488)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766555444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-14 Score=134.76 Aligned_cols=172 Identities=15% Similarity=0.051 Sum_probs=128.6
Q ss_pred HHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHH
Q 011657 280 GLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGS 359 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 359 (480)
.+.++..+.....+..+.|.+.++.|. +..+.++..+...++..++.++.|++.||+|||+.+.++.++..++.+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 107 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEMLADLGL-SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF 107 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 333333333334556778899999999 8889999999999999999999999999999999999988888887776654
Q ss_pred HhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHH
Q 011657 360 YYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFY 439 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~ 439 (480)
. .+.+.......+.+.+.+. ..+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..||++.|+
T Consensus 108 ~-----~~~~~l~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~ 181 (434)
T PRK11663 108 S-----SSLWAFALLWVLNAFFQGW-GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMM 181 (434)
T ss_pred H-----hHHHHHHHHHHHHHHHHHc-cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 2 2223222222222333333 335556888999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 011657 440 AFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~ 458 (480)
+.+++.++..+...+..+|
T Consensus 182 ~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 182 IAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 8877665544333333333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=132.01 Aligned_cols=181 Identities=16% Similarity=0.089 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHH
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 352 (480)
+...+...+.+...........+..|.+.++.|. +..+.++..+...++..++.++.|++.||+|||+++..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL-SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 3444445555555555556677777887888888 899999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH--
Q 011657 353 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-- 430 (480)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-- 430 (480)
+.++..+. .+ ...+...-++.+.......|....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+
T Consensus 86 ~~~~~~~~-----~~-~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 86 ASTATMFA-----TG-PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHHHHh-----cC-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77776542 23 33333333444444444456666788999999999999999999999999999999888764
Q ss_pred ----hhCccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 431 ----LLGAGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 431 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
..||++.|++.++..++..++.+++.+|++
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 368999999988877766666666666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-14 Score=126.18 Aligned_cols=174 Identities=22% Similarity=0.199 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHH
Q 011657 277 IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFL 356 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 356 (480)
+.+.+..+.....-....-.+|.+-++.+. +..++|...+.+..+..++.++...+.||+.||++++..+.++.++.++
T Consensus 16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~v-s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 16 LALALAAFAIGTTEFVPVGLLPPIAADLGV-SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 333344444444445666788999999999 9999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccH
Q 011657 357 LGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGI 436 (480)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~ 436 (480)
..+ ..++..+...-+..+.....+.++..++..++.|+++|++++++......++..+|.++..++.|.+||+.
T Consensus 95 ~al------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~ 168 (394)
T COG2814 95 SAL------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA 168 (394)
T ss_pred HHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence 876 34555555555555555555566777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 011657 437 LFYAFGVIAVLSLAFIFXXXX 457 (480)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~ 457 (480)
.|+..+++.++..+..+...|
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999888888787
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=130.17 Aligned_cols=165 Identities=19% Similarity=0.076 Sum_probs=127.7
Q ss_pred hhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh
Q 011657 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
........|.+.++.|. +..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+++... ++ .
T Consensus 21 ~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~ 93 (385)
T TIGR00710 21 IDMYLPAFPEIAADLST-PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----NN-I 93 (385)
T ss_pred HHHhcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----cc-H
Confidence 33444556778888898 88999999999999999999999999999999999999888887777766542 22 3
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (480)
..+....++.+.......+...+++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|+..+++.+++.++..
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS 173 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 33333333333333333455568899999999999999999999999999999999999999999999988887777666
Q ss_pred HhcCCCCCCCCC
Q 011657 450 AFIFXXXXXXXX 461 (480)
Q Consensus 450 ~~~~~~~~~~~~ 461 (480)
+..++..||+++
T Consensus 174 ~~~~~~~~~~~~ 185 (385)
T TIGR00710 174 ALIFFILPETLP 185 (385)
T ss_pred HHHHHhCCCCCC
Confidence 665555555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=129.42 Aligned_cols=161 Identities=7% Similarity=0.045 Sum_probs=119.4
Q ss_pred hhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCch
Q 011657 290 QPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVP 368 (480)
Q Consensus 290 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (480)
......+.+.++ ++.|. +..+.++..+...++.+++.++.|+++||+|||+++..+..+..++.+++.+. ++.
T Consensus 23 ~~~~~~~l~~~l~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~ 96 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSL-SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNV 96 (395)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHH
Confidence 344455555555 56788 88999999999999999999999999999999999988888777776655432 233
Q ss_pred hHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHH
Q 011657 369 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLS 448 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (480)
+..+....+.... .....+...++..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .||+..|++.+++.++.
T Consensus 97 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 97 TLVVLFFALINCA-YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 3333322232222 223345566788999999999999999999999999999999998875 78999999888777766
Q ss_pred HHhcCCCCCC
Q 011657 449 LAFIFXXXXX 458 (480)
Q Consensus 449 ~~~~~~~~~~ 458 (480)
.+...+..++
T Consensus 175 ~i~~~~~~~~ 184 (395)
T PRK10054 175 LVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHhc
Confidence 5544433333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=131.47 Aligned_cols=164 Identities=17% Similarity=0.125 Sum_probs=126.8
Q ss_pred ChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCch
Q 011657 289 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVP 368 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (480)
.......+.|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++.. ..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~- 104 (398)
T TIGR00895 32 DLAAMGFAAPAISAEWGL-DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL-----ATN- 104 (398)
T ss_pred HHHHHHhhHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----ccc-
Confidence 344566778888888888 8889999999999999999999999999999999999888877777666543 122
Q ss_pred hHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHH
Q 011657 369 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLS 448 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (480)
...+....++.+.......+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..||+..+++.+++.++.
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence 33333333333443344456667899999999999999999999999999999999999999999998888876665555
Q ss_pred HHhcCCCCCCC
Q 011657 449 LAFIFXXXXXX 459 (480)
Q Consensus 449 ~~~~~~~~~~~ 459 (480)
.++.+...+|+
T Consensus 185 ~~~~~~~~~~~ 195 (398)
T TIGR00895 185 LLLLMRFLPES 195 (398)
T ss_pred HHHHHHhCCCC
Confidence 55544445554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=128.48 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=124.8
Q ss_pred HHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHH
Q 011657 294 LYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVV 373 (480)
Q Consensus 294 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (480)
....|.+.++.|. ++.+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++... ..+.+..++
T Consensus 40 ~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~ 113 (394)
T PRK10213 40 VSLLTPMAQDLGI-SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF-----ANSFSLLLI 113 (394)
T ss_pred HhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH-----HChHHHHHH
Confidence 3356777888898 8899999999999999999999999999999999999999988887766543 223333333
Q ss_pred HHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcC
Q 011657 374 ALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (480)
..+..+.......+...+++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..||++.|++.+++.++..+...
T Consensus 114 -~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 114 -GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333345666688899999999999999999999999999999999999999999999988877766555444
Q ss_pred CCCCCC
Q 011657 454 XXXXXX 459 (480)
Q Consensus 454 ~~~~~~ 459 (480)
...||+
T Consensus 193 ~~~p~~ 198 (394)
T PRK10213 193 KSLPSL 198 (394)
T ss_pred HHCCCC
Confidence 334553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=129.16 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=125.0
Q ss_pred HHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 293 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 293 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
.....|.+.++.|. +..+.++..+...++..++.++.|++.||+|||+++..+..+..++.+..... ++.+. +
T Consensus 28 ~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~-l 100 (390)
T PRK03545 28 PVGLLSDIAQSFHM-QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----WNFTV-L 100 (390)
T ss_pred HHcchHHHHhHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----ccHHH-H
Confidence 33456888889999 89999999999999999999999999999999999999988888887766542 23333 3
Q ss_pred HHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
....+..+.......+...+++.|.+|+++|+++.|+......++..++|.+.+.+.+..||++.|++.+++.++..+..
T Consensus 101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 101 LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334455567889999999999999999999999999999999999999999999999888777665554
Q ss_pred CCCCCC
Q 011657 453 FXXXXX 458 (480)
Q Consensus 453 ~~~~~~ 458 (480)
+...|+
T Consensus 181 ~~~~~~ 186 (390)
T PRK03545 181 IKLLPL 186 (390)
T ss_pred HHhCCC
Confidence 444444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=130.76 Aligned_cols=179 Identities=13% Similarity=0.049 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHH
Q 011657 274 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 353 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 353 (480)
..+...++..+........+..-.|.+.++.|. +..+.++..+.+.++..++.++.|+++||+|||+++..+..+..++
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~-s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA-SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344445555555555556777788999999988 8889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeeccc-CChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 354 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV-FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
.++++. .++.+..+ ..-.+.+.......+.....+.+. .|+++|+++.|+......+|..++|.+.+.+.++.
T Consensus 85 ~~~~~~-----a~~~~~li-~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 85 SLAAAF-----SPTASWLI-ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred HHHHHH-----cCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 887764 23333333 333333333333444444455455 47799999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 433 GAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 433 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
||++.|++...++++..++.++..|+.
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999998877777666655555554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=132.81 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=134.2
Q ss_pred HHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHh
Q 011657 282 VLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYY 361 (480)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 361 (480)
..+.............|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-- 86 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV-- 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC--
Confidence 3333334445667788999999998 8889999999999999999999999999999999999998888887776653
Q ss_pred hccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHH
Q 011657 362 LFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAF 441 (480)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~ 441 (480)
..+...+....++.+.......+...+++.|.+|+++|+++.++......+|..++|.+.+.+.++.||++.|++.
T Consensus 87 ----~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 87 ----APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred ----cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 2333333444444444444455667789999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 011657 442 GVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~ 459 (480)
+.+.++..++.++..+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hHHHHHHHHHHHHHcCCc
Confidence 777666655554445543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=129.33 Aligned_cols=162 Identities=13% Similarity=0.039 Sum_probs=128.8
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
..+....|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+.++..++..++... .+.+
T Consensus 11 ~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~- 83 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGL-SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----GAYV- 83 (399)
T ss_pred HhhhHhHHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----cCHH-
Confidence 3555667778888888 88999999999999999999999999999999999998888877777766542 2333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.+....++.+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|++.|++.+++.++..+
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 33333333334344445666689999999999999999999999999999999999999999999999988887777666
Q ss_pred hcCCCCCCC
Q 011657 451 FIFXXXXXX 459 (480)
Q Consensus 451 ~~~~~~~~~ 459 (480)
..++..+++
T Consensus 164 ~~~~~~~~~ 172 (399)
T TIGR00893 164 LWLKFIPDP 172 (399)
T ss_pred HhhheecCC
Confidence 655545544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=134.10 Aligned_cols=181 Identities=14% Similarity=0.030 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHH
Q 011657 271 CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGI 350 (480)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 350 (480)
..+.+++.+++..+........+....|.+..+.+. +..+.+++.+...++.+++.++.|+++||+|||+.++++.++.
T Consensus 164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl-s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI-PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 344444444444333333333456677888788888 8888999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH
Q 011657 351 VISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 430 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 430 (480)
+++.++..+. .+ ...+++..++.+....+..+...+++.|.+|++.|+...++.+++..+|.++++.+...+..
T Consensus 243 ~i~~ll~afa-----~s-~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 243 GFFAFFSSFV-----QG-YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHH-----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665431 22 33333333333333334456777999999999999999999999999999998877665554
Q ss_pred hh-------------CccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 431 LL-------------GAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 431 ~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
.. +|++.+++.++.+++..++ .++.||.
T Consensus 317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~-~~~lPES 357 (742)
T TIGR01299 317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA-LTFMPES 357 (742)
T ss_pred hccchhccccccccccHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 33 4666666665555554443 3446665
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-13 Score=126.62 Aligned_cols=180 Identities=13% Similarity=0.042 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHH
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 352 (480)
++.+....+..+.............|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+++..+.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL-TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444444444444555667777888888998 889999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 353 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
+.++... ..+ ...+....++.+.......+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..
T Consensus 90 ~~~~~~~-----~~~-~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 90 GTLACGF-----APG-YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHHHH-----hcc-HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7766553 123 3333333333333333444555688899999999999999999999999999999999888876
Q ss_pred C--ccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 433 G--AGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 433 g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
+ |+..+++.++..++..+. ....||++
T Consensus 164 ~~~w~~~f~~~~~~~~~~~~~-~~~~~~~~ 192 (405)
T TIGR00891 164 GDGWRALFFISILPIIFALWL-RKNIPEAE 192 (405)
T ss_pred CccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 6 888887765555544433 33345543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=125.36 Aligned_cols=344 Identities=17% Similarity=0.188 Sum_probs=218.7
Q ss_pred HhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 011657 52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131 (480)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 131 (480)
..+.++++..+..++....++..+..+.+. |+++..+.|++.+.+-++..+...+..+..-|.-|-+.+-+|+
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~ 169 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGL 169 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeech
Confidence 334555667778888878888888888877 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--------------------C---------------------------c----hH-HHHHHHHHHHH
Q 011657 132 LLYLVGALVTALA--------------------P---------------------------D----FI-IMVVGRFVFGI 159 (480)
Q Consensus 132 ~~~~~~~~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~ 159 (480)
++++++++++++- + + ++ .++++.++.|+
T Consensus 170 ~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI 249 (735)
T KOG3626|consen 170 VLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI 249 (735)
T ss_pred hHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc
Confidence 9999999998762 0 0 12 56668899999
Q ss_pred HHhH------------------------------hHHhhhhhhhh--------h--------------hhhhHHHHhchh
Q 011657 160 GIGL------------------------------GGYGIGSLLVD--------L--------------VAGWRYMYGAST 187 (480)
Q Consensus 160 g~g~------------------------------~g~~~g~~l~~--------~--------------~~~wr~~f~~~~ 187 (480)
|... +||++|.++.. . ...|..-|++.+
T Consensus 250 G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g 329 (735)
T KOG3626|consen 250 GATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICG 329 (735)
T ss_pred CCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHH
Confidence 8877 55555555542 1 114777788888
Q ss_pred HHHHHHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCC---ChhhHHHHHHhhhcccccccccHH
Q 011657 188 PLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS---APTEVDEILTELSYVGEDKEVSLR 264 (480)
Q Consensus 188 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 264 (480)
.+.++..+.++++|+..+--.+ + ...++.+..+.+.. .+..... .-++-....+
T Consensus 330 ~~~~~~a~p~f~fPk~lp~~~~-----------~-----~~~~~~~~~k~~~~~~~~~~~~~~-------~ikdfp~s~~ 386 (735)
T KOG3626|consen 330 ALLLFSAVPLFFFPKELPKSQK-----------R-----KRARDLHVLKTESGGAKSDKTFGK-------KIKDFPKSIK 386 (735)
T ss_pred HHHHHHHHHHHhCcccCccccc-----------c-----chhhhhcccccccccccCCcchhh-------hHHHHHHHHH
Confidence 8888877777778765321000 0 00000000000000 0000000 0001112334
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhhc--Cc
Q 011657 265 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL-FKLIMTGLAVLVVERLG--RR 340 (480)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~~ 340 (480)
.+++++ +++...+........+..+..|+|.|++. +|. ++..+..+....++ +..+|.+++|++..|+. .|
T Consensus 387 ~ll~N~----if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~-sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r 461 (735)
T KOG3626|consen 387 RLLSNP----IFMLVVLASVIESLAITGYITFLPKYLETQFGI-SASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSAR 461 (735)
T ss_pred HHhcCc----hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCC-CHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHH
Confidence 444443 44444555555555666778889988875 566 77777777755444 44578889999999875 34
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhc---------------------------------------------------------
Q 011657 341 PLLLGGVSGIVISLFLLGSYYLF--------------------------------------------------------- 363 (480)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 363 (480)
....+.++...++++.+...+..
T Consensus 462 ~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpCh 541 (735)
T KOG3626|consen 462 GAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCH 541 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhh
Confidence 45544444444444442221111
Q ss_pred --------c-------------C----C--------------c-hhHHHHHHHHHHHHHhcccccccceeecccCChhhh
Q 011657 364 --------L-------------D----D--------------V-PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLR 403 (480)
Q Consensus 364 --------~-------------~----~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 403 (480)
. . . . ....++..++..+....+..|.. .++...+|++.|
T Consensus 542 AGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~-~i~LR~V~~e~k 620 (735)
T KOG3626|consen 542 AGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGM-LIVLRCVPPEEK 620 (735)
T ss_pred hCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcce-EEEEEccCchhc
Confidence 0 0 0 0 11222223333333344444444 788888999999
Q ss_pred hhHHHHHHHH-HHHHHHhHhhcchhhHHh
Q 011657 404 GRGLSVAVLV-NFGANALVTFAFSPLKDL 431 (480)
Q Consensus 404 ~~~~~~~~~~-~~~g~~i~~~~~~~~~~~ 431 (480)
..++|+..++ +-+|.+-+|.++|+++|.
T Consensus 621 s~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 621 SFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred hhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 9999999887 677889999999999985
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-13 Score=127.64 Aligned_cols=163 Identities=19% Similarity=0.045 Sum_probs=124.1
Q ss_pred hhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh
Q 011657 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
........|.+.++.+. ++.+.++..+...++..++.++.|+++||+|||+++..+..+..++.+++.. ..+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~ 104 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGL-DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ-----AWDFP 104 (406)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----hccHH
Confidence 34556667888888898 8899999999999999999999999999999999999988777776665543 22333
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (480)
..++.. ++.+.......+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+++.+++.++..
T Consensus 105 ~~~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (406)
T PRK11551 105 SLLVAR-LLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLV 183 (406)
T ss_pred HHHHHH-HHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 333333 3333333333455668899999999999999999999999999999988888888889988888776655555
Q ss_pred HhcCCCCCCC
Q 011657 450 AFIFXXXXXX 459 (480)
Q Consensus 450 ~~~~~~~~~~ 459 (480)
++.....+|+
T Consensus 184 ~~~~~~l~~~ 193 (406)
T PRK11551 184 PLLMRWLPES 193 (406)
T ss_pred HHHHHhCCCC
Confidence 5444445554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=122.09 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHH
Q 011657 274 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 353 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 353 (480)
.+++...+.+...+..-..++.-.|.+.++.++ +..|.+.+.+...+...++-.+.|.++||.+.|..+.+++++.++.
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l-sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL-SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 334444444444433344566677888888888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc--hhhHHh
Q 011657 354 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF--SPLKDL 431 (480)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~--~~~~~~ 431 (480)
.+++++ .++...+.++..+.+.++..-.|.+...+..-+|+++||+..++-|...++|+++.|.+. +.+.++
T Consensus 108 nil~Gf------s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 108 NILFGF------SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHhh------hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 999886 235555555555666655555566668899999999999999999999999999999999 888888
Q ss_pred hCccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 432 LGAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 432 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
.+|+..|++-++++++..++.++..+++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999888887777666544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=125.97 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=123.3
Q ss_pred HHHHhHH-HHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 292 SVLYYAA-SILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 292 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
......| .+.++.|. +..+.++..+...++..++.++.|+++||+|||+++..+.++.+++..+..+ ..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-----~~~~~- 86 (352)
T PF07690_consen 14 IISPALPLYLAEELGL-SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-----ASNFW- 86 (352)
T ss_dssp HHHHHHH-HHHCCSTT-TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----HCCHH-
T ss_pred HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-----hhhHH-
Confidence 4455566 66677888 8999999999999999999999999999999999999998888888444432 13344
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.+....++.+.......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+++.++..+
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 44444444444444455677789999999999999999999999999999999999999889999999999998888876
Q ss_pred h
Q 011657 451 F 451 (480)
Q Consensus 451 ~ 451 (480)
+
T Consensus 167 l 167 (352)
T PF07690_consen 167 L 167 (352)
T ss_dssp H
T ss_pred h
Confidence 5
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-13 Score=126.35 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=127.6
Q ss_pred HHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhcc
Q 011657 285 QQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFL 364 (480)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (480)
....+........|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..++..
T Consensus 14 ~~~~~~~~~~~~lp~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~----- 87 (392)
T PRK10473 14 LYPAGIDMYLVGLPRIAADLNA-SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL----- 87 (392)
T ss_pred HHHHHHHHHhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH-----
Confidence 3333444555678888889888 8888999999999999999999999999999999999888887777766543
Q ss_pred CCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHH
Q 011657 365 DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 444 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 444 (480)
..+.+..+... ++.+.......+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+++.+++
T Consensus 88 ~~~~~~~~~~~-~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~ 166 (392)
T PRK10473 88 AETSSLFLAGR-FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAM 166 (392)
T ss_pred hCcHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHH
Confidence 12223323222 23333333333455678899999999999999999999999999999988888888999989888877
Q ss_pred HHHHHHhcCCCCCCCC
Q 011657 445 AVLSLAFIFXXXXXXX 460 (480)
Q Consensus 445 ~~~~~~~~~~~~~~~~ 460 (480)
.++..++.+...+|++
T Consensus 167 ~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 167 GILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7766665544455544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=128.59 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=126.1
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
..+....|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++... . +..
T Consensus 12 ~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~ 84 (379)
T TIGR00881 12 KNFALAMPYLVEEIGL-SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T-SLW 84 (379)
T ss_pred HhhhhhhHHHHHHhCC-CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h-hHH
Confidence 4556677888888898 88999999999999999999999999999999999999988888877776542 2 333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh-hcchhhHHhhCccHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT-FAFSPLKDLLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (480)
.+....++.+.......+...+++.|.+|+++|+.+.++.+....+|..+++ .+.+.+.+..+|+..+++.+++.++..
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS 164 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 3333334444444445567778999999999999999999999999999999 466666677889998888887776665
Q ss_pred HhcCCCCCCC
Q 011657 450 AFIFXXXXXX 459 (480)
Q Consensus 450 ~~~~~~~~~~ 459 (480)
++.+...+++
T Consensus 165 ~~~~~~~~~~ 174 (379)
T TIGR00881 165 LICFLLLRDS 174 (379)
T ss_pred HHHheeeCCC
Confidence 5555545443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=127.67 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=127.7
Q ss_pred HHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhc
Q 011657 284 FQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF 363 (480)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
+........+..+.|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+++..+..+..++.++...
T Consensus 20 ~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---- 94 (471)
T PRK10504 20 FMQSLDTTIVNTALPSMAQSLGE-SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL---- 94 (471)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----
Confidence 33333445667788999999998 8888889999999999999999999999999999998887777766665443
Q ss_pred cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHH
Q 011657 364 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGV 443 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~ 443 (480)
..+.+..+ ...++.+.......+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||++.|++...
T Consensus 95 -~~~~~~l~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~ 172 (471)
T PRK10504 95 -SGTLNELL-LARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP 172 (471)
T ss_pred -hCCHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence 22333333 3333333333334556667889999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHhcCCCCCC
Q 011657 444 IAVLSLAFIFXXXXX 458 (480)
Q Consensus 444 ~~~~~~~~~~~~~~~ 458 (480)
+..+..+......++
T Consensus 173 ~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 173 VGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHhCCC
Confidence 666665555444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=121.95 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=118.7
Q ss_pred hhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh
Q 011657 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
........|.+.++.+. +..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++... .++.+
T Consensus 23 ~~~~g~~~~~i~~~~~~-s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~-----~~~~~ 96 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNL-PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF-----SHSLA 96 (394)
T ss_pred HHHHhhhhHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----cchHH
Confidence 34566677888888888 8889999999999999999999999999999999998888877777766654 22333
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH-hhCccHHHHHHHHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-LLGAGILFYAFGVIAVLS 448 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 448 (480)
..++...+.+.+.+ ...+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..||++.|.+.+++.++.
T Consensus 97 ~~~~~~~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~ 175 (394)
T PRK03699 97 LFSIAMFVLGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAI 175 (394)
T ss_pred HHHHHHHHHHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33333333333333 3334555788999999999999999988888999999999888765 468999998888776665
Q ss_pred HHhc
Q 011657 449 LAFI 452 (480)
Q Consensus 449 ~~~~ 452 (480)
.++.
T Consensus 176 ~~~~ 179 (394)
T PRK03699 176 FILT 179 (394)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-13 Score=124.54 Aligned_cols=161 Identities=16% Similarity=0.090 Sum_probs=125.1
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
......|.+.++.|. +..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.++... .++.+..
T Consensus 21 ~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~-----~~~~~~l 94 (382)
T PRK10091 21 GIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL-----SSSYLML 94 (382)
T ss_pred HHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH-----hCcHHHH
Confidence 555577888888898 8889999999999999999999999999999999999998888888776654 2333333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHh
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
++.. ++.+.......+....++.|.+|+++|+.+++.......++..+++.+.+.+.+..||++.|++.+++.++..+.
T Consensus 95 ~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 95 AIGR-LVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHH-HHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 3333 333333222334445677889998899999999999999999999999999999899999999988877666555
Q ss_pred cCCCCCCC
Q 011657 452 IFXXXXXX 459 (480)
Q Consensus 452 ~~~~~~~~ 459 (480)
.+...||.
T Consensus 174 ~~~~lp~~ 181 (382)
T PRK10091 174 IYFWVPDI 181 (382)
T ss_pred HHHhCCCC
Confidence 44445554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=124.49 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=123.0
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
...--.|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+++..+..+..++.++... .++.+..
T Consensus 34 ~~~p~l~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l 107 (413)
T PRK15403 34 LIQPGIINVVRDFNA-DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----TTSMTQF 107 (413)
T ss_pred hhccCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----cCCHHHH
Confidence 333344566677888 8888999999999999999999999999999999999988887777766553 2333333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHh
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
++ .-++.+.......+....+..|.+|++++++++++.+....++..++|.+.+.+.+..||++.|++.+++.++..+.
T Consensus 108 ~~-~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 108 LI-ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33 33333332222334455778899999999999999999999999999999999988889999999988887777665
Q ss_pred cCCCCCCCC
Q 011657 452 IFXXXXXXX 460 (480)
Q Consensus 452 ~~~~~~~~~ 460 (480)
.++..||++
T Consensus 187 ~~~~lp~~~ 195 (413)
T PRK15403 187 LLLAMPETV 195 (413)
T ss_pred HHHhCCCCc
Confidence 444456654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=123.45 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHH
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 354 (480)
..+...+..+........+....|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+++..+..+..++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 92 (406)
T PRK15402 14 FPLCLVLFEFATYIANDMIQPGMLAVVEDFNA-GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTC 92 (406)
T ss_pred HHHHHHHHHHHHHhhhhhHhcchHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 33333333333333334444556777788888 88899999999999999999999999999999999998887777776
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCc
Q 011657 355 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGA 434 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~ 434 (480)
+..... .+.+ .+....++.+.......+...+.+.|.+|++.|..+.++......++..++|.+.+.+.+..+|
T Consensus 93 ~~~~~~-----~~~~-~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 93 LAILLA-----QSIE-QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred HHHHHH-----ccHH-HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 665431 2222 2333333333322233345567888999999999999999888888999999999999998999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 435 GILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
++.+++.+++.++..+..+...||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999888887776665544456554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=121.97 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=123.5
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
.......|.+..+.+. +..+.++..+...++..++.++.|+++||+|||+++..+..+..++.+++........ .+.+
T Consensus 16 ~~~~~~~~~~~~~~~~-s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 93 (365)
T TIGR00900 16 AITQVALPLYVLAGTG-SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG-LNIW 93 (365)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-CcHH
Confidence 3455566777788887 8889999999999999999999999999999999999888877776666554322111 1333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.+....++.+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.++..++..+
T Consensus 94 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 173 (365)
T TIGR00900 94 QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISAL 173 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333344444445666689999999999999999999999999999999999999999999988887776665554
Q ss_pred hcC
Q 011657 451 FIF 453 (480)
Q Consensus 451 ~~~ 453 (480)
..+
T Consensus 174 ~~~ 176 (365)
T TIGR00900 174 LIV 176 (365)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=126.39 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=116.8
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
.+....|.+. +.|. ++.+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+++.... ....+...
T Consensus 45 ~~~~~~p~~~-~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 120 (438)
T TIGR00712 45 NFALAMPYLV-EQGF-SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP--WATSSIAI 120 (438)
T ss_pred cHHhhhHHHH-HcCC-CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc--cccchHHH
Confidence 3445566655 4577 889999999999999999999999999999999998888777777766554311 01122222
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH-hhCccHHHHHHHHHHHHHHH
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-LLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 450 (480)
+....+..+.......+.....+.|.+|+++|+++.|+.+....+++.+++.+.+...+ ..+|+..|++.++++++..+
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~ 200 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22222223333322334444778899999999999999999999999999988776554 46899999998887777655
Q ss_pred hcCCCCCCC
Q 011657 451 FIFXXXXXX 459 (480)
Q Consensus 451 ~~~~~~~~~ 459 (480)
+.+++.+|+
T Consensus 201 ~~~~~~~~~ 209 (438)
T TIGR00712 201 FAFAMMRDT 209 (438)
T ss_pred HHHHhccCC
Confidence 544445543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=124.32 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=114.0
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
.....+.|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+++..+.++..++.++.... .+.+.
T Consensus 53 ~~~~~~~~~l~~~~gl-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~ 126 (476)
T PLN00028 53 FAAAPLLPIIRDNLNL-TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATG 126 (476)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHH
Confidence 3455567788888998 88888998888999999999999999999999999988887777776655431 23333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH---------hhCccHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD---------LLGAGILFYAF 441 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~---------~~g~~~~~~~~ 441 (480)
.++..++ .+.......+ ...++.|.+|+++|+.+.|+.+...++|+.+++.+.+.+.. ..||++.|++.
T Consensus 127 l~~~r~l-~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 127 FIAVRFF-IGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHH-HHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 3222222 2322223333 33567899999999999999998888888887776655432 24899999998
Q ss_pred HHHHHHHHHhcCCCC
Q 011657 442 GVIAVLSLAFIFXXX 456 (480)
Q Consensus 442 ~~~~~~~~~~~~~~~ 456 (480)
+++.++..++.+++.
T Consensus 205 g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 205 GLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888776665555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=123.37 Aligned_cols=186 Identities=12% Similarity=0.008 Sum_probs=131.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 263 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
++.+.+++.++..++...+..+ +........|.+.++.+. ++.+.++..+...++..++.++.|+++||+|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~ 84 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIF----GLGLLGVAVPVQIQMMTG-STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL 84 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence 3444455665555444333333 233556677888888887 88899999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
+..+..+.+++...+...... ..++.+.+....+..+.......+...+++.|.+|+++|+++.++.+....+|..++|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 163 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAFL-PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP 163 (417)
T ss_pred EEehHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence 888877776666554322111 1223333333333322222222344457888999999999999999999999999999
Q ss_pred hcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 423 FAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.+.+.+.+..++++.+++.++..++..+..+.
T Consensus 164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T PRK10489 164 ALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR 195 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999889988888877766666555443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=123.52 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 355 (480)
...+.+....+..--+.+....+..-+.++. +....|++.....+...+++++.|++.||++|++++.+|..+-.++.+
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni-~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~ 113 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNI-SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF 113 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCC-CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence 3334444444444444555555555566677 888999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-c
Q 011657 356 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-A 434 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~ 434 (480)
+.++. ...+.+.++-.+.+..-..+.|+..++++|.+|.++|++.+++.++...+|..+|-...+.+.+..+ |
T Consensus 114 ~~~fs------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 114 ASGFS------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHH------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 87752 5555666666666666777888999999999999999999999999999999998888888888777 9
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCh
Q 011657 435 GILFYAFGVIAVLSLAFIFXXXXXXXXSF 463 (480)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (480)
++.|.+.+++.++..++.+++.+|..++.
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 99999999999988888887777765543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=124.16 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=112.6
Q ss_pred HHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 293 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 293 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
+....|.+.++ |. +..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+++.+... ...+...+
T Consensus 48 ~~~~~p~l~~~-g~-s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVEQ-GF-SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAVM 123 (452)
T ss_pred HHHhhHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc--ccccHHHH
Confidence 45566776666 87 8899999999999999999999999999999999999988888877776654211 11223232
Q ss_pred HHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHh-HhhcchhhHHhhCccHHHHHHHHHHHHHHHh
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL-VTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
.....+.+.......+.....+.|.+|+++|++++|+.+....+|+.+ ++.+...+....||+..|++.+++.++..++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 332233333333333444467788899999999999999988888654 4443333333458888998888776665555
Q ss_pred cCCCCCCC
Q 011657 452 IFXXXXXX 459 (480)
Q Consensus 452 ~~~~~~~~ 459 (480)
.+++.+|+
T Consensus 204 ~~~~~~~~ 211 (452)
T PRK11273 204 AFAMMRDT 211 (452)
T ss_pred HHHHccCC
Confidence 44444543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=123.76 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=116.1
Q ss_pred hhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-cCchHHHhhhHHHHHHHHHHHHHhhccCCc
Q 011657 290 QPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLFLDDV 367 (480)
Q Consensus 290 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (480)
++....++|.++.+ .|+ +..+++...........++.+++|+++||+ |||+.+.++.++..++.+++... ...
T Consensus 25 ~Yg~~~~L~~yL~~~lgl-s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~~ 99 (493)
T PRK15462 25 FYGMRALLILYLTNQLKY-DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EIH 99 (493)
T ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hcc
Confidence 34555667777654 678 888899999999999999999999999999 99999999998888887655421 111
Q ss_pred hhHHHHHHHHHHHHHhcccccccceeecccCChh--hhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHH
Q 011657 368 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR--LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 445 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 445 (480)
.........+...+ .....+...+++.|.+|++ .|.++.++.+...++|+.++|.+.+++.+..||+..|.+.++..
T Consensus 100 ~~~~~l~l~li~iG-~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 100 PSFLYLSLAIIVCG-YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred hhHHHHHHHHHHHh-cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 12222222222222 2223355557899999875 79999999999999999999999999999999999998876655
Q ss_pred HHHHHhc
Q 011657 446 VLSLAFI 452 (480)
Q Consensus 446 ~~~~~~~ 452 (480)
+++.+..
T Consensus 179 ~l~li~~ 185 (493)
T PRK15462 179 IAGLVIF 185 (493)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=123.83 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=120.7
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHH
Q 011657 281 LVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSY 360 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (480)
+..+.............|.+.++.|. ++.+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 103 (426)
T PRK12307 25 LGYVFDGFDFMLIFYIMYLIKADLGL-TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444556667777788888 88899999999999999999999999999999999999998888887766542
Q ss_pred hhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHH
Q 011657 361 YLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYA 440 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~ 440 (480)
++ ...+....++.+.......+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..||++.+++
T Consensus 104 -----~~-~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 -----SG-VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred -----hH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 22 333333333333333334455567889999999999999999999999999999998888888899998887
Q ss_pred HHHHH
Q 011657 441 FGVIA 445 (480)
Q Consensus 441 ~~~~~ 445 (480)
.....
T Consensus 178 ~~~~~ 182 (426)
T PRK12307 178 GLLPV 182 (426)
T ss_pred HHHHH
Confidence 54433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=122.09 Aligned_cols=162 Identities=12% Similarity=0.034 Sum_probs=120.2
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
......|.+.++.+. ++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.... .++ ...
T Consensus 26 ~~~p~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----~~~-~~~ 98 (394)
T PRK11652 26 IYVPAIADMARDLNV-REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF-----AHS-LTV 98 (394)
T ss_pred HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----Hcc-HHH
Confidence 334456778888999 8899999999999999999999999999999999999888877777666543 122 223
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHh
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
+....++.+.......+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..||+..|++.+++.++..+.
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 33333333322222234444677888888899999999999999999999999999999899999998887766655444
Q ss_pred cCCCCCCCC
Q 011657 452 IFXXXXXXX 460 (480)
Q Consensus 452 ~~~~~~~~~ 460 (480)
..+..||++
T Consensus 179 ~~~~~~~~~ 187 (394)
T PRK11652 179 MARWMPETR 187 (394)
T ss_pred HHHhCCccC
Confidence 444455543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=117.43 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=120.4
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
.+.+++--.+++.+. .+.--|........+.++..++.+++++|+|+-+++..++.+..+-++.+..+ .++|..
T Consensus 389 lv~tFLfWHled~~~-~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----~n~W~v 462 (618)
T KOG3762|consen 389 LVFTFLFWHLEDLGG-IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----QNPWMV 462 (618)
T ss_pred HHHHHHHHHHhhcCC-cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----cCchhe
Confidence 344444445677776 67777788888888999999999999999999999999888888877776652 455555
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHH-HHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
+..-++-+......+..+. +|++...|++.++++.++.... ..+|-.+|+++.|.+.+.+|.+..|.++++.+++.++
T Consensus 463 LPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred eeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 5444444455555554444 8999999999999999999877 5788899999999999999999999988887777665
Q ss_pred hcC
Q 011657 451 FIF 453 (480)
Q Consensus 451 ~~~ 453 (480)
...
T Consensus 542 ~~~ 544 (618)
T KOG3762|consen 542 LFI 544 (618)
T ss_pred HHH
Confidence 543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=121.27 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=119.4
Q ss_pred HHhHH-HHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 294 LYYAA-SILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 294 ~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
..+.+ ++.++.|. +..+.++......+...+..++.|+++||+|||+++..+..+..++.+.+.. .++.+...
T Consensus 30 ~~~~~~~~~~~~g~-s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~-----~~~~~~l~ 103 (400)
T PRK11646 30 FPLISIRFVDQLGW-AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI-----AHEPWLLW 103 (400)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH-----hccHHHHH
Confidence 33444 44567788 8999999999999999999999999999999999999999888888877654 23333333
Q ss_pred HHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
+ ..+..+.......|...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+. ..||++.|++.+.+.++..++.
T Consensus 104 ~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 104 L-SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence 3 3333333333344555678899999999999999999999999999999999998 6799998988877766655443
Q ss_pred CCCCCC
Q 011657 453 FXXXXX 458 (480)
Q Consensus 453 ~~~~~~ 458 (480)
.+..+|
T Consensus 182 ~~~~~~ 187 (400)
T PRK11646 182 AWLLPA 187 (400)
T ss_pred HHhCCc
Confidence 333444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=120.75 Aligned_cols=162 Identities=12% Similarity=0.036 Sum_probs=119.6
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
..+....|.+.++.+. +..+.++..+...++..++.+..|+++||+|||+++.........+..... ...+..
T Consensus 8 ~~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~------~~~~~~ 80 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDV-SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL------DPFNYE 80 (368)
T ss_pred HHHHhhHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH------HhccHH
Confidence 3556678888899999 889999999999999999999999999999998876654444333322111 112333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.+...-++.+...... +.......|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|++.+++.++..+
T Consensus 81 ~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 81 WLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 3333333333333222 233355689999999999999999999999999999999999999999999998888777766
Q ss_pred hcCCCCCCCC
Q 011657 451 FIFXXXXXXX 460 (480)
Q Consensus 451 ~~~~~~~~~~ 460 (480)
+.++..||.+
T Consensus 160 ~~~~~lp~~p 169 (368)
T TIGR00903 160 LVLAALPALP 169 (368)
T ss_pred HHHHHcCCCC
Confidence 6666666654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=123.66 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=120.2
Q ss_pred hChhHHHHhHHHHHHh---cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hcCchHHHhhhHHHHHHHHHHHHHhhc
Q 011657 288 TGQPSVLYYAASILQS---AGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLF 363 (480)
Q Consensus 288 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
.+++....++|.|+++ .|. +..+++.......++..++.+++|+++|| +|||+++..+..+.+++.+++..
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~-s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~---- 98 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGF-SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM---- 98 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 3444556667777765 677 88899999999999999999999999999 89999999999998888877654
Q ss_pred cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhh---hhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHH
Q 011657 364 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL---RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYA 440 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~ 440 (480)
..+.+...+... +.+.......+...+++.|.+|++. |+++.++.+...++|..++|.+.+.+.++.||+..|.+
T Consensus 99 -~~~~~~~~~~~~-l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 99 -SIYPDLIFYGLG-TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred -cccHhHHHHHHH-HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 122222322222 3333333445566678888888654 88899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHh
Q 011657 441 FGVIAVLSLAF 451 (480)
Q Consensus 441 ~~~~~~~~~~~ 451 (480)
.++..+++.+.
T Consensus 177 ~~~~~~~~~l~ 187 (475)
T TIGR00924 177 AAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHH
Confidence 77655555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-14 Score=139.16 Aligned_cols=348 Identities=18% Similarity=0.199 Sum_probs=2.7
Q ss_pred HhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011657 57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV 136 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 136 (480)
.++..+......+.++..+..+++. |+++..+.|++.+.+-++..+..++..++.+|..|-|.+-+|.+++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~ 80 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL 80 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence 3444455566677778888888887 999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHhc----C----------------------------------------------chHHHHHHHHHHHHHHhH---
Q 011657 137 GALVTALA----P----------------------------------------------DFIIMVVGRFVFGIGIGL--- 163 (480)
Q Consensus 137 ~~~~~~~~----~----------------------------------------------~~~~l~~~r~l~G~g~g~--- 163 (480)
|++++++= . -+..++++.++.|+|...
T Consensus 81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t 160 (539)
T PF03137_consen 81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT 160 (539)
T ss_dssp -----------------------------------------------------------------------SSS------
T ss_pred HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence 99887641 0 025667788889988887
Q ss_pred ---------------------------hHHhhhhhh----hhhh-----------------h----hhHHHHhchhHHHH
Q 011657 164 ---------------------------GGYGIGSLL----VDLV-----------------A----GWRYMYGASTPLAV 191 (480)
Q Consensus 164 ---------------------------~g~~~g~~l----~~~~-----------------~----~wr~~f~~~~~~~~ 191 (480)
+||.+|.++ ...+ + .|-.-|++.+++.+
T Consensus 161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~ 240 (539)
T PF03137_consen 161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF 240 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 555554443 3110 1 25555666666666
Q ss_pred HHHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhh
Q 011657 192 IMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC 271 (480)
Q Consensus 192 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (480)
+..+.++++|+..+-..+ ..++.+...++. .+...+...+. +..+.....-+.-....+.+++|+.
T Consensus 241 l~aipl~~FPk~lp~~~~-----------~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~df~~~l~~Ll~Np~ 306 (539)
T PF03137_consen 241 LSAIPLFFFPKKLPGTSE-----------RQEEKESSERKE--EDSDKDSFKDP-KSKKSFGKSIKDFPKALKRLLTNPV 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCccCCCccc-----------ccchhhhhhcch--hhhhhhccccc-ccccchhhhhhhHHHHHHHHhcChH
Confidence 655556666654221100 000000000000 00000000000 0000000011122334455555553
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhhc--CchHHHhhh
Q 011657 272 LKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL-FKLIMTGLAVLVVERLG--RRPLLLGGV 347 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~~~~~~~~~ 347 (480)
++...+...........+..+.|.|++. ++. ++.++.++.....+ +..+|.+++|++.+|++ .|..+.+..
T Consensus 307 ----f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~-sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~ 381 (539)
T PF03137_consen 307 ----FMCLILAGVFESFIVSGFATFLPKYLESQFGL-SASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI 381 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence 3333333444444455777788888875 455 77777777655554 66688899999999875 344444444
Q ss_pred HHHHHHHHHHHHHhhc-------------c---------------------------------CC--chhH-HHHHHHHH
Q 011657 348 SGIVISLFLLGSYYLF-------------L---------------------------------DD--VPAV-AVVALLLY 378 (480)
Q Consensus 348 ~~~~~~~~~~~~~~~~-------------~---------------------------------~~--~~~~-~~~~~~~~ 378 (480)
+...++.+.+...+.. . .+ .... .++..++.
T Consensus 382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~ 461 (539)
T PF03137_consen 382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL 461 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence 4444443331111110 0 00 0111 22222222
Q ss_pred HHHHhcccccccceeecccCChhhhhhHHHHHHHH-HHHHHHhHhhcchhhHHh
Q 011657 379 VGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTFAFSPLKDL 431 (480)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~i~~~~~~~~~~~ 431 (480)
.........|.. ...-..+|+++|+.|.|+...+ +-+|.+-+|.++|.++|.
T Consensus 462 ~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 462 SFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 333334444554 5667888999999999999887 567889999999999986
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=122.29 Aligned_cols=159 Identities=13% Similarity=0.024 Sum_probs=117.9
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
..+..+.+.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.++.+.++..++.+++... .+.+.
T Consensus 36 ~~~~~~~~~i~~~~g~-s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~ 109 (455)
T TIGR00892 36 KAVTVFFKELQQIFQA-TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS-----SNVIE 109 (455)
T ss_pred cchhhhHHHHHHHhCc-chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----hhHHH
Confidence 3456677888899999 88889999999988899999999999999999999998887777777665431 22222
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.+....++.+.......+....++.+.+| ++|+++.|+.+....+|..++|.+.+.+.+..||++.|++.+++.++..+
T Consensus 110 l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 110 LYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCV 188 (455)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 22222122222222222333466778886 78999999999999999999999999999999999999999887766555
Q ss_pred hcCCCC
Q 011657 451 FIFXXX 456 (480)
Q Consensus 451 ~~~~~~ 456 (480)
..++..
T Consensus 189 ~~~~~~ 194 (455)
T TIGR00892 189 CGALMR 194 (455)
T ss_pred HHHHhC
Confidence 443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=121.59 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=125.3
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
......|.+.++.|. ++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++..++... .+.+..
T Consensus 9 ~~~p~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~ 82 (377)
T PRK11102 9 MYLPALPVIAADFGV-SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTIDQL 82 (377)
T ss_pred HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHH
Confidence 334466777788888 88999999999999999999999999999999999999888888877776542 223333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHh
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
.. ..++.+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.+.+.++..++
T Consensus 83 ~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IY-MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 33 33333333333445556788999999999999999999999999999999999999999999998888777776655
Q ss_pred cCCCCCCC
Q 011657 452 IFXXXXXX 459 (480)
Q Consensus 452 ~~~~~~~~ 459 (480)
..+..+|+
T Consensus 162 ~~~~~~~~ 169 (377)
T PRK11102 162 VFFFIPET 169 (377)
T ss_pred HHHhCCcc
Confidence 54445554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-12 Score=119.22 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=119.1
Q ss_pred hHHHHhHHHHHHhcCCCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC
Q 011657 291 PSVLYYAASILQSAGFSAASD-----ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD 365 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (480)
.....+.|.+.++.|. +..+ .+...+...+...++.++.|+++||+|||+.+..+.....++.+++.. .
T Consensus 31 ~~~~~~l~~~~~~~g~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~ 104 (408)
T PRK09874 31 SLVMPFLPLYVEQLGV-TGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL-----A 104 (408)
T ss_pred HHhhhhHHHHHHHhCC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH-----H
Confidence 3455677888888887 5443 377888899999999999999999999999998888777776665543 1
Q ss_pred CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHH
Q 011657 366 DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 445 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 445 (480)
.+.+..+ ...++.+... +..+....++.+.+|+++|+.+.++.+....+|..++|.+.+.+.+..+|+..+++.+++.
T Consensus 105 ~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 182 (408)
T PRK09874 105 QNIWQFL-ILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVL 182 (408)
T ss_pred hhHHHHH-HHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 2223333 2323333322 2345555678888999999999999999999999999999999999999999998888877
Q ss_pred HHHHHhcCCCCCC
Q 011657 446 VLSLAFIFXXXXX 458 (480)
Q Consensus 446 ~~~~~~~~~~~~~ 458 (480)
++..+..+++.++
T Consensus 183 ~~~~~~~~~~~~~ 195 (408)
T PRK09874 183 FLCFLVTLFCIRE 195 (408)
T ss_pred HHHHHHHHHHhcc
Confidence 7666555444444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.5e-12 Score=122.95 Aligned_cols=163 Identities=12% Similarity=0.019 Sum_probs=123.4
Q ss_pred HHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHH
Q 011657 278 GAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLL 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 357 (480)
...+..+.............|.+.++.|. +..+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 102 (496)
T PRK03893 24 AAWLGYLLDGFDFVLITLVLTEVQGEFGL-TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLAC 102 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33333333333444566677888888888 88899999999999999999999999999999999998888888777766
Q ss_pred HHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHH
Q 011657 358 GSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGIL 437 (480)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~ 437 (480)
... .+...+....++.+.......+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+|++.
T Consensus 103 ~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 103 GFA------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 542 23333333333444433344455567889999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 011657 438 FYAFGVIAVL 447 (480)
Q Consensus 438 ~~~~~~~~~~ 447 (480)
|++.+...++
T Consensus 177 f~~~~~~~~~ 186 (496)
T PRK03893 177 FFIGILPIIF 186 (496)
T ss_pred HHHHHHHHHH
Confidence 8765443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.3e-12 Score=118.52 Aligned_cols=149 Identities=9% Similarity=-0.032 Sum_probs=105.3
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
....+.+.+.++.|. +..+.++..+...++..++.++.|++.||+|||+++..+..+..++.+++... .. ...++..
T Consensus 31 ~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 107 (402)
T TIGR00897 31 LEQGWLSPFLKALGL-SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF-GL-GHANYPL 107 (402)
T ss_pred hHHHhHHHHHHHhCC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-hc-cCccHHH
Confidence 344466667788888 88999999999999999999999999999999999998888877765543221 11 1122333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHH-HhHhhcchhhHHhhCccHHHHHHHH
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN-ALVTFAFSPLKDLLGAGILFYAFGV 443 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~g~~~~~~~~~~ 443 (480)
+.....+.+.......+.....+.+.+|+++|++++|+.++...+|. .++|.+.+.+.+..|++..++....
T Consensus 108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 22222222222222223333567788899999999999999999886 5788888888888886555454433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=116.93 Aligned_cols=155 Identities=18% Similarity=0.166 Sum_probs=112.2
Q ss_pred ChhHHHHhHHH-HHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCc
Q 011657 289 GQPSVLYYAAS-ILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV 367 (480)
Q Consensus 289 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (480)
.......+.|. +.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+++... ..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~~ 89 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGL-STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----VQ 89 (366)
T ss_pred HHHHhHHhhhHHHHHHhCC-CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----hh
Confidence 33456667775 6678888 89999999999999999999999999999999999999988888887776542 20
Q ss_pred hhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh----------hCccHH
Q 011657 368 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL----------LGAGIL 437 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~----------~g~~~~ 437 (480)
+...+....++.+...... +....++.|.+|+++|+.+.++.....++|..+++.+.+.+... .+|++.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~ 168 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA 168 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence 3333333333333333333 33457889999999999999999988888888888777766653 378888
Q ss_pred H-HHHHHHHHHHHH
Q 011657 438 F-YAFGVIAVLSLA 450 (480)
Q Consensus 438 ~-~~~~~~~~~~~~ 450 (480)
+ +..+.+..+..+
T Consensus 169 ~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 169 FVIVPAGILLLPAL 182 (366)
T ss_pred hHHHHHHHHHHHHH
Confidence 7 433444433333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-12 Score=120.74 Aligned_cols=153 Identities=13% Similarity=0.113 Sum_probs=113.4
Q ss_pred hHHHHhHHHH-HHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hcCchHHHhhhHHHHHHHHHHHHHhhccCCch
Q 011657 291 PSVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVP 368 (480)
Q Consensus 291 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (480)
+....+++.| .++.|. +..++.+..........+..+++|+++|| +|||+++..+.++..++.+.+.+. ...
T Consensus 31 y~~~~~l~~yl~~~lg~-~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-----~~~ 104 (489)
T PRK10207 31 YGVQGILAVFFVKQLGF-SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-----LLK 104 (489)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-----ccc
Confidence 3444444444 456777 77888888888888888888899999999 999999999999999888777642 121
Q ss_pred hHHHHHHHHHHHHHhcccccccceeecccCChh--hhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHH
Q 011657 369 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR--LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (480)
...+.......+.......|...+++.|.+|++ +|+.+.++.+...++|..++|.+.|++.++.||++.|++.++..+
T Consensus 105 ~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 105 PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 222222233334444445566678999999877 457789999999999999999999999999999999988655444
Q ss_pred HHH
Q 011657 447 LSL 449 (480)
Q Consensus 447 ~~~ 449 (480)
++.
T Consensus 185 ~~~ 187 (489)
T PRK10207 185 IAL 187 (489)
T ss_pred HHH
Confidence 333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=118.38 Aligned_cols=155 Identities=17% Similarity=0.082 Sum_probs=116.0
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHH
Q 011657 296 YAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVAL 375 (480)
Q Consensus 296 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (480)
..|.+.++.+. ++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++... ..+.+..++..
T Consensus 28 ~~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 101 (401)
T PRK11043 28 AFKAIQADLQT-SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW-----VESAAQLLVLR 101 (401)
T ss_pred hHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH-----hcCHHHHHHHH
Confidence 34556678888 8899999999999999999999999999999999999888777776665543 12333333222
Q ss_pred HHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCC
Q 011657 376 LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
.+. +.......+...+++.|.+|++.++...+..+....++..++|.+.+.+.+..||+..+++.+++.++..+..+..
T Consensus 102 ~l~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 102 FVQ-AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHH-HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 222 2222222233446778999989899999999988999999999999999999999999988887777666555443
Q ss_pred CC
Q 011657 456 XX 457 (480)
Q Consensus 456 ~~ 457 (480)
.+
T Consensus 181 ~~ 182 (401)
T PRK11043 181 KP 182 (401)
T ss_pred CC
Confidence 33
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-11 Score=113.86 Aligned_cols=175 Identities=11% Similarity=0.075 Sum_probs=116.2
Q ss_pred HHHHHHhhChhHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHH
Q 011657 281 LVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGS 359 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 359 (480)
+.+...+..........+.+.+ +.++ +..+.++..++..+...+.++..|++.||+|.|+++.++..+..+..+.+.+
T Consensus 41 ~~f~~~F~~w~~~~~l~~~~~~~~~~l-s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~ 119 (462)
T PRK15034 41 SCLLLAFCVWMLFSAVTVNLNKIGFNF-TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGI 119 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444555555544 6888 8899999999999999999999999999999999999988888777776654
Q ss_pred HhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH-----Hh---
Q 011657 360 YYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK-----DL--- 431 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-----~~--- 431 (480)
.... ..+++..+....++.+..+..+ +.....+++.+|+++||++.|+....+++|..+++.+.+.+. +.
T Consensus 120 a~~~-~~~s~~~lli~r~l~Gigg~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~ 197 (462)
T PRK15034 120 AVQN-PNTPFGIFIVIALLCGFAGANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGV 197 (462)
T ss_pred HHcc-cCCCHHHHHHHHHHHHHHHHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2111 1123333333333333333333 455578899999999999999998777777776666555433 22
Q ss_pred ----------hCccHHHHHHHHHHHHHHHhcCCCCCC
Q 011657 432 ----------LGAGILFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 432 ----------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
.+++.+.++...+.++..++.++..++
T Consensus 198 ~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 198 NGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 234555566666666666555554444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=123.13 Aligned_cols=179 Identities=13% Similarity=0.017 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHH
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 354 (480)
.+....+.++..+..-..+....|.+.++.|. +..+.++..+...++..++.++.|+++||+|+|+++..+.++.++..
T Consensus 30 i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 108 (467)
T PRK09556 30 SYLVVFIGYLTMYLIRKNFKAAQNDMISTYGL-STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICM 108 (467)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHH
Confidence 33333343333333333445567888889999 88999999999999999999999999999999999988887777766
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh--
Q 011657 355 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-- 432 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-- 432 (480)
++++...... ..+...+....+..+.......|....++.|.+|+++|++++|+.+....+|.++++.+...+.+..
T Consensus 109 ~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~ 187 (467)
T PRK09556 109 LGFGASLGSG-SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFD 187 (467)
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhcc
Confidence 6655422211 2333333333334444433444666689999999999999999999999999999998877666643
Q ss_pred -CccHHHHHHHHHHHHHHHhcCCC
Q 011657 433 -GAGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 433 -g~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
+|+..|.+.+++.++..++.+++
T Consensus 188 ~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 188 GHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHh
Confidence 46777777666665554444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=121.51 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=119.1
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
+....+.|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.... .+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~ 93 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGV-GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA-----DSLAA 93 (377)
T ss_pred hhhhhHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH-----HHHHH
Confidence 3556678888889999 89999999999999999999999999999999999999988888887766542 22333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.++... +.+.......+.......+.+| ++|+.+.++......+|..+++.+.+.+.+..||++.|++.+++.++..+
T Consensus 94 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 94 LYLTYG-LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHH-HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 333333 3222222222333356677777 67999999999998899888887888888888999999988887777665
Q ss_pred hcCCCCC
Q 011657 451 FIFXXXX 457 (480)
Q Consensus 451 ~~~~~~~ 457 (480)
..+++.+
T Consensus 172 ~~~~~~~ 178 (377)
T TIGR00890 172 LGAFLIG 178 (377)
T ss_pred HHHHhee
Confidence 5544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=115.15 Aligned_cols=161 Identities=20% Similarity=0.055 Sum_probs=115.2
Q ss_pred hhHHHHhHHHH-HHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCC--
Q 011657 290 QPSVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDD-- 366 (480)
Q Consensus 290 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 366 (480)
........|.+ .++.|. +..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+.+.........
T Consensus 31 ~~~~~~~l~~~i~~~~g~-s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGF-SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPV 109 (399)
T ss_pred HHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 34455566654 456787 88999999999999999999999999999999999999888776665544332111110
Q ss_pred chhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHH
Q 011657 367 VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446 (480)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (480)
.....++...++.+.......+....+..|..|+++|+++.++......+|..+++.+.+.+.+..||+..+++.+++.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 110 LSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred hHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11222233333333333334455556778999999999999999888899999999999999999999887777666555
Q ss_pred HHHHh
Q 011657 447 LSLAF 451 (480)
Q Consensus 447 ~~~~~ 451 (480)
+..+.
T Consensus 190 ~~~~~ 194 (399)
T PRK05122 190 LGLLL 194 (399)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-12 Score=123.20 Aligned_cols=151 Identities=13% Similarity=-0.001 Sum_probs=117.6
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Q 011657 303 SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCY 382 (480)
Q Consensus 303 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (480)
+.+. +..+.+...+...++..++.++.|++.||+|+|+.+..+.++..++.++..... ......++..-++.+..
T Consensus 70 ~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKW-SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCC-CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHh
Confidence 4456 777889999999999999999999999999999999888877776665543211 12233344444455555
Q ss_pred hcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-CccHHHHHHHHHHHHHHHhcCCCCCC
Q 011657 383 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-GAGILFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 383 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
.....|....++.|.+|+++|+++.|+.+....+|.++++.+.+.+.+.. ||+..|++.+++.++..++.+.+.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 55566777789999999999999999999999999999999999999884 99999999888776665555444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=117.98 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=107.7
Q ss_pred hhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hcCchHHHhhhHHHHHHHHHHHHHhhccCCc
Q 011657 290 QPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLDDV 367 (480)
Q Consensus 290 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (480)
++....+.+.++ ++.|. +..+++..............+++|+++|| +|||+.+..+..+..++..++.+. .+
T Consensus 37 ~y~~~~~l~~yl~~~lg~-s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-----~~ 110 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGM-SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-----GH 110 (500)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-----cc
Confidence 344555666665 66777 77777777766665656666789999999 599999999988888877666531 12
Q ss_pred hhHHHHHHHHHHHHHhcccccccceeecccCChhh--hhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHH
Q 011657 368 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL--RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 445 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 445 (480)
....+.......+.......+...++..|.+|++. +..+.++.++..++|..++|.+.+++.+..||++.|.+.++..
T Consensus 111 ~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~ 190 (500)
T PRK09584 111 DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM 190 (500)
T ss_pred cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 22222222222233333344565578899997543 4567888899999999999999999999999999998877554
Q ss_pred HHHH
Q 011657 446 VLSL 449 (480)
Q Consensus 446 ~~~~ 449 (480)
+++.
T Consensus 191 ~i~~ 194 (500)
T PRK09584 191 LITV 194 (500)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=114.02 Aligned_cols=155 Identities=14% Similarity=0.019 Sum_probs=108.8
Q ss_pred HHHHhHHHH-HHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC--Cch
Q 011657 292 SVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD--DVP 368 (480)
Q Consensus 292 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 368 (480)
...-..|.+ .++.|. +..+.++..+...++..++.++.|+++||+|||+++..+.+...++.+.......... ..+
T Consensus 33 ~~~p~l~~~l~~~lg~-s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (392)
T PRK12382 33 LPLPVIPLFVHHDLGF-GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFK 111 (392)
T ss_pred HHhhhhhHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHH
Confidence 333445544 467788 8999999999999999999999999999999999998887766655443222111111 122
Q ss_pred hHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHH
Q 011657 369 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 447 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (480)
...+....++.+.......+...+++.|.+|+++|++++++......++..++|.+.+.+.+..||+..+.+...+.++
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~ 190 (392)
T PRK12382 112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLL 190 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 2333333333333333333444467789999999999999999989999999999999998988988766554444333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=114.01 Aligned_cols=151 Identities=13% Similarity=-0.020 Sum_probs=117.2
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
.......|.+.++.+. +..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.+...+ .++.+.
T Consensus 26 ~~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~-----a~~~~~ 99 (393)
T PRK09705 26 TSVGPLLPQLRQASGM-SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL-----YPQSAL 99 (393)
T ss_pred hccchhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH-----CcchHH
Confidence 3455678888889999 8899999999999999999999999999999999999999999999988775 233333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-CccHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-GAGILFYAFGVIAVLSL 449 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~ 449 (480)
+....++.+.......+....++.+.+| ++|+.++++.......|..+++.+.+.+.++. +|+..+.+.++..++..
T Consensus 100 -ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 100 -LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred -HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3333334333333344455577788887 77999999999999999999999998888875 78877766555544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-11 Score=112.12 Aligned_cols=154 Identities=13% Similarity=0.115 Sum_probs=113.7
Q ss_pred HHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHH
Q 011657 294 LYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVV 373 (480)
Q Consensus 294 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (480)
....+.+.++.+. +..+.++......+...+..++.|+++||+|||+++..+..+.+++.+++... .+. +
T Consensus 23 ~~~~~~~~~~~~~-s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----~~~---~- 92 (393)
T PRK11195 23 LFAAIALLKELHY-PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-----IHP---L- 92 (393)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----HHH---H-
Confidence 3444455677777 77788999999999999999999999999999999999988887766654331 111 2
Q ss_pred HHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcC
Q 011657 374 ALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (480)
...++.+.......|...+++.|.+|+++|++++|+.+....++..+||.+.|.+.+.. +...+.+.+.+.+++.+..
T Consensus 93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~~- 170 (393)
T PRK11195 93 LAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALFN- 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-
Confidence 22233444455566787899999999999999999999999999999999999998854 5555555554444443333
Q ss_pred CCCCCC
Q 011657 454 XXXXXX 459 (480)
Q Consensus 454 ~~~~~~ 459 (480)
+..||.
T Consensus 171 ~~l~~~ 176 (393)
T PRK11195 171 LFIPRL 176 (393)
T ss_pred hcCCCC
Confidence 334443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=107.54 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=131.2
Q ss_pred HhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC
Q 011657 286 QITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD 365 (480)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (480)
.++.+..+....+.+-++.++ |+.|.+++..+..+.+.+.+++-|.+.||+|.|++...+.++..+-++.+.+...
T Consensus 26 ~F~VW~l~s~l~~~i~~~~~L-S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~--- 101 (417)
T COG2223 26 GFMVWTLFSPLGVFIKSDFGL-SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT--- 101 (417)
T ss_pred HHHHHHHHHHHHhhhccccCC-CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc---
Confidence 333444556666777788899 9999999999999999999999999999999999999999988888877765422
Q ss_pred CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC---ccHHHHHHH
Q 011657 366 DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG---AGILFYAFG 442 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g---~~~~~~~~~ 442 (480)
..+++.++.+.++.+..+..+ .....++++.+|++++|.++|++. .+|+|..+...+.+.+....| |+.+..+..
T Consensus 102 ~~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~ 179 (417)
T COG2223 102 YPSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYV 179 (417)
T ss_pred CCchHHHHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222234444444444444444 455589999999999999999999 999999999999999999988 888888888
Q ss_pred HHHHHHHHhcCCCCCC
Q 011657 443 VIAVLSLAFIFXXXXX 458 (480)
Q Consensus 443 ~~~~~~~~~~~~~~~~ 458 (480)
...++..+..++..++
T Consensus 180 ~~l~v~~v~~~~~~~d 195 (417)
T COG2223 180 VALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8777777776665543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-11 Score=115.08 Aligned_cols=154 Identities=17% Similarity=0.040 Sum_probs=110.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhc------cCCchhHHHHHHHHH
Q 011657 305 GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF------LDDVPAVAVVALLLY 378 (480)
Q Consensus 305 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 378 (480)
+. +..+.++..+...++..++.++.|+++||+|||+++..+..+..++.++....... ........++..-++
T Consensus 51 ~~-~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 51 SA-ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred cC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence 55 67788999999999999999999999999999999999888877776655431000 011112233334344
Q ss_pred HHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH--------HhhCccHHHHHHHHHHHHHHH
Q 011657 379 VGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK--------DLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.+.......+...+++.|.+|+++|+.++++.+....+|..+++.+.+.+. +..||++.|++.++..++..+
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM 209 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH
Confidence 445445555667789999999999999999999988888888766543332 356899999887776666655
Q ss_pred hcCCCCCCCC
Q 011657 451 FIFXXXXXXX 460 (480)
Q Consensus 451 ~~~~~~~~~~ 460 (480)
..+ +.||+.
T Consensus 210 ~~~-~l~~s~ 218 (479)
T PRK10077 210 LLY-FVPETP 218 (479)
T ss_pred HHH-cCCCCc
Confidence 443 456653
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=111.76 Aligned_cols=157 Identities=21% Similarity=0.184 Sum_probs=125.8
Q ss_pred ChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCch
Q 011657 289 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVP 368 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (480)
.........|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.+... .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~ 86 (352)
T cd06174 14 DRGLLSPALPLLAEDLGL-SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA------SS 86 (352)
T ss_pred hhhhhHhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh------cc
Confidence 344566677888888888 88999999999999999999999999999999999999888888888776542 23
Q ss_pred hHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHH
Q 011657 369 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLS 448 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (480)
...+....+..+.......+...++..|.+|+++|++..++.+....+|..++|.+.+.+.+..+|+..+++.+.+.++.
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333334444444444456666899999999999999999999999999999999999999888988888877766665
Q ss_pred HHhc
Q 011657 449 LAFI 452 (480)
Q Consensus 449 ~~~~ 452 (480)
.+..
T Consensus 167 ~~~~ 170 (352)
T cd06174 167 ALLL 170 (352)
T ss_pred HHHH
Confidence 5443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-10 Score=98.30 Aligned_cols=74 Identities=24% Similarity=0.460 Sum_probs=70.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 163 (480)
+|.+..|++.+....+....+..++.|.++||+|||+.-++.+++.+++++ +-.+++++.++++|++.|++...
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999986 55679999999999999999998
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-11 Score=114.03 Aligned_cols=186 Identities=14% Similarity=0.091 Sum_probs=138.3
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHH
Q 011657 265 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL 344 (480)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 344 (480)
..+|++.++.+++...+..+.......... .+..+... ++...+++.....+..++..+++|.++||++||++++
T Consensus 5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~----wlv~~lt~-S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 5 APLRNRNFRRLWIAQLISNLGDWMQTVALA----WLVTQLTG-SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 346778888887777666665543333333 23334444 7888999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhc
Q 011657 345 GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 424 (480)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~ 424 (480)
.+-++.++....+.+...... .+.+.++.+.+..+.......|...+++.|++|+++...++++.....++...+||.+
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFGL-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 888777666555554333322 3334444445555555556678888999999999999999999999999999999999
Q ss_pred chhhHHhhCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 425 FSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 425 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
.|.++...|...+|.+.++..++..+......
T Consensus 159 gG~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 159 GGILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999988888888776666555544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=118.32 Aligned_cols=147 Identities=20% Similarity=0.037 Sum_probs=109.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhccccc
Q 011657 309 ASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGP 388 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (480)
..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++..... .......++...++.+.......+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~ 146 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---FALSVEMLIVGRVLLGIGVGIASA 146 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHh
Confidence 78899999999999999999999999999999999988888877776664321 122222333333333333333445
Q ss_pred ccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc---hhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 389 IGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF---SPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
....++.|.+|+++|+.+.++.+....+|..+++.+. +...+..+|++.|++.+...++..+..+ +.+|+
T Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~l~~~ 219 (481)
T TIGR00879 147 LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLF-FLPES 219 (481)
T ss_pred HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHh-cCCCC
Confidence 6668999999999999999999999999999999988 6666778899998886665555544433 34554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=112.42 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=110.7
Q ss_pred HHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHh-hhHHHHHHHHHHHHHhhccCCchh
Q 011657 292 SVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLG-GVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 292 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
......|.++ ++.|. +..+.++..+...+...+..++.|+++||+|||+.+.. +..+..++.++... .+ ++
T Consensus 15 ~~~~~l~~~l~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~~ 87 (375)
T TIGR00899 15 LQFPTLSLFLSEEVRA-RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW-----NR-NY 87 (375)
T ss_pred HHhhHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh-----cc-hH
Confidence 4444555544 56788 88999999999999999999999999999999887654 44444444444332 22 23
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCChhhhhhH--HHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRG--LSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 447 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (480)
+.+.......+.......|...++..|..|++.|+.+ .+.......+|..++|.+.+.+.+..||+..|++.+.+.++
T Consensus 88 ~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~ 167 (375)
T TIGR00899 88 FLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVL 167 (375)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3332222222333333445555677777776666644 57777788899999999999999999999999998887777
Q ss_pred HHHhcCCCCCCC
Q 011657 448 SLAFIFXXXXXX 459 (480)
Q Consensus 448 ~~~~~~~~~~~~ 459 (480)
..++.++..||.
T Consensus 168 ~~~~~~~~~~~~ 179 (375)
T TIGR00899 168 CGVLVWLFLPSY 179 (375)
T ss_pred HHHHHHHhCCCc
Confidence 666655545553
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=109.92 Aligned_cols=138 Identities=17% Similarity=-0.051 Sum_probs=106.6
Q ss_pred hChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCc
Q 011657 288 TGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV 367 (480)
Q Consensus 288 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (480)
........+.|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++...... .++
T Consensus 20 ~~~~~~~~~lp~~~~~~~~-s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~-----~~~ 93 (381)
T PRK03633 20 LAIAVLNTLVPLWLAQEHL-PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL-----MVG 93 (381)
T ss_pred HhhhhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc
Confidence 3445667788999999998 8899999999999999999999999999999999999988888877776553 223
Q ss_pred hhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 368 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
.+..+ ...+..+.......+.......+..++++|+++.+..+....+|..+++.+.+.+.+..
T Consensus 94 ~~~l~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 94 FWSWL-AWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33333 33333333333333444455667788899999999999999999999999998887653
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=111.00 Aligned_cols=158 Identities=15% Similarity=0.015 Sum_probs=117.4
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
.......|.+.++.+. +..+.++..+...++..++.+..|++.||+|||+.+..+..+.+++..++.... ...++.
T Consensus 20 ~~~~~l~~~~~~~~~~-s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~---~~~~~~ 95 (410)
T TIGR00885 20 DITNPMVPQFQQAFTL-TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA---EIMNYT 95 (410)
T ss_pred HhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---hhccHH
Confidence 3445677888888898 889999999999999999999999999999999999999999888877653211 122333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH--------------------
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-------------------- 430 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-------------------- 430 (480)
.+....+..+.......+....++.+..|++++++..++.+.+..+|..++|.+.+.+..
T Consensus 96 ~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (410)
T TIGR00885 96 LFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELS 175 (410)
T ss_pred HHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHH
Confidence 333333333333333334444677888899999999999999999999999998887742
Q ss_pred ------hhCccHHHHHHHHHHHHHHHhc
Q 011657 431 ------LLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 431 ------~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
..+|+.+|++.+++.++..++.
T Consensus 176 ~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 176 AIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357888888877666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=112.10 Aligned_cols=172 Identities=14% Similarity=-0.022 Sum_probs=112.6
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhcCCCCCcc-hHH-----HHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHH
Q 011657 281 LVLFQQITGQPSVLYYAASILQSAGFSAASD-ATR-----VSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 354 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 354 (480)
+..+.....+..+.+..|.+-++.+. +..+ ... ..+...++..++.++.|+++||+|||+++..+.++.+++.
T Consensus 23 ~g~~~~~~d~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~ 101 (490)
T PRK10642 23 LGNAMEWFDFGVYGFVAYALGKVFFP-GADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSIST 101 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33333333444555666666555543 2211 122 1355667888999999999999999999999999999888
Q ss_pred HHHHHHhhccCCchhH-------HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchh
Q 011657 355 FLLGSYYLFLDDVPAV-------AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSP 427 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 427 (480)
++.++. .+... .++..-++.+....+..+...+++.|.+|+++|+...++......+|..+++.+...
T Consensus 102 ~~~a~~-----~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 102 FCIGLI-----PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHhc-----ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877652 12111 133333444444444556666899999999999999999888777777777755443
Q ss_pred hH--------HhhCccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 428 LK--------DLLGAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 428 ~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
+. ...||++.|++.+.+.+++.++ ....+|+
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~-~~~~~es 215 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYL-RHALEET 215 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHH-HHcCCCC
Confidence 32 2578999998876655544433 3345664
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=112.54 Aligned_cols=151 Identities=14% Similarity=-0.011 Sum_probs=106.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccc
Q 011657 308 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
+..+.++......++.+++.++.|++.||+|||+.+..+.++..++.++...............+...-++.+.......
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 34466788999999999999999999999999999998888888777665542100000012333333334444444445
Q ss_pred cccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH-----------------------hhCccHHHHHHHHH
Q 011657 388 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-----------------------LLGAGILFYAFGVI 444 (480)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-----------------------~~g~~~~~~~~~~~ 444 (480)
+....++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+.+.++.
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 6666999999999999999999999999998888877655432 13688888666655
Q ss_pred HHHHHHhcCCCCCCC
Q 011657 445 AVLSLAFIFXXXXXX 459 (480)
Q Consensus 445 ~~~~~~~~~~~~~~~ 459 (480)
.++..+.. +..||+
T Consensus 214 ~~i~~~~~-~~lpES 227 (502)
T TIGR00887 214 ALLALYFR-LTIPET 227 (502)
T ss_pred HHHHHHHH-HhCCCC
Confidence 55544443 446775
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=97.85 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecc
Q 011657 317 ILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISE 396 (480)
Q Consensus 317 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+...++.+++.++.+++.||+|||+.+..+.....++.+.+.. ..+.+.......+.+ .......+....+..|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-----SSNITVLIIARFLQG-FGAAFALVAGAALIAD 78 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHH-HHHHHHHHhHHHHHHH
Confidence 3456788889999999999999999998887777776665543 123333333333333 3333334566688999
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCC
Q 011657 397 VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 397 ~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
.+|+++|+++.++.+....++..+++.+.+.+.+..+++..+++.+.+.++..+..++..+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999998898888888888777777666665544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-11 Score=119.24 Aligned_cols=177 Identities=14% Similarity=0.030 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHH
Q 011657 277 IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFL 356 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 356 (480)
+...+..+.............+.+-++++. +..+.+++.+...++..++.++.+++.||.+||+.+.++.++.+++.++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~l-ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKL-STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCC-CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 333334444443344555666777788888 8899999999999999999999999999999999999999999999888
Q ss_pred HHHHhhcc-------------------------C--------------------CchhHHHHHHHHHHHHHhcccccccc
Q 011657 357 LGSYYLFL-------------------------D--------------------DVPAVAVVALLLYVGCYQLSFGPIGW 391 (480)
Q Consensus 357 ~~~~~~~~-------------------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
+++..... . ...+..+++.-++.+.......++..
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 76432100 0 00223333444555555555667778
Q ss_pred eeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh----------------------CccHHHHHHHHHHHHHH
Q 011657 392 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL----------------------GAGILFYAFGVIAVLSL 449 (480)
Q Consensus 392 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----------------------g~~~~~~~~~~~~~~~~ 449 (480)
+++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.. +|+..|++.+++.++..
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877542 14456777776666655
Q ss_pred HhcCC
Q 011657 450 AFIFX 454 (480)
Q Consensus 450 ~~~~~ 454 (480)
+..++
T Consensus 275 v~l~~ 279 (633)
T TIGR00805 275 IPFFF 279 (633)
T ss_pred HHHHh
Confidence 54444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-10 Score=109.34 Aligned_cols=172 Identities=15% Similarity=0.031 Sum_probs=112.0
Q ss_pred HHHHhhChhHHHHhHHHHHHhcCC--CCCcc---hHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHH
Q 011657 283 LFQQITGQPSVLYYAASILQSAGF--SAASD---ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLL 357 (480)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 357 (480)
..........+.+..|.+.++.+. .+..+ .+.......++..++.++.|+++||+|||+.+..+..+..++.++.
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 110 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 333444445666677777777642 12332 3334455566666999999999999999999999999988888776
Q ss_pred HHHhhccCCch------hHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH--
Q 011657 358 GSYYLFLDDVP------AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK-- 429 (480)
Q Consensus 358 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-- 429 (480)
++. ++.. ...+...-+..+....+..+...+++.|.+|+++|+.+.++.+.....|..+++.+...+.
T Consensus 111 ~~~----~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 186 (432)
T PRK10406 111 ACL----PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQT 186 (432)
T ss_pred hhc----CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 542 1111 1123333334444444455677799999999999999999888777777777665543332
Q ss_pred ------HhhCccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 430 ------DLLGAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 430 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
...||+..|++.++..++...+ ....+|.
T Consensus 187 ~~~~~~~~~gWr~~F~i~~~~~ll~~~~-~~~~~e~ 221 (432)
T PRK10406 187 LEDAELREWGWRIPFALGAVLAVVALWL-RRQLDET 221 (432)
T ss_pred CCHHHHhccchHHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 2578999998877766655433 2334444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=107.75 Aligned_cols=284 Identities=15% Similarity=0.163 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH------------------
Q 011657 102 GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL------------------ 163 (480)
Q Consensus 102 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~------------------ 163 (480)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. +|.++ +.|+..+.
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44678888999999999999999999999988888887777666 33322 32322222
Q ss_pred ------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHH
Q 011657 164 ------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRES 224 (480)
Q Consensus 164 ------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 224 (480)
+|+.+++.+.... +.-.+|++..+..++ ......++||+-..-.+ ++
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~-------------~~ 210 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQEKER-------------SD 210 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCcccc-------------cc
Confidence 5666666665553 677788888888777 55566778887320000 00
Q ss_pred HHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-Hh
Q 011657 225 AISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QS 303 (480)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 303 (480)
...++...+..... .....++...+....+..+.......+..........-..+.++ ..
T Consensus 211 -----~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~ 271 (463)
T KOG2816|consen 211 -----ATLRELTPGSLDSS--------------HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK 271 (463)
T ss_pred -----ccccccCCCcccch--------------hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee
Confidence 00000000000000 00111111111111122222111111111100000000011122 23
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHH-HHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Q 011657 304 AGFSAASDATRVSILLGLFKLIMTGLAV-LVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCY 382 (480)
Q Consensus 304 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (480)
.++ +..+.+.+.+...+...++.++.. .+...++.|+....|.....+.....++. ...|..+....+ . ..
T Consensus 272 f~w-~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~v~-~-~~ 343 (463)
T KOG2816|consen 272 FGW-NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAGVV-V-AL 343 (463)
T ss_pred cCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHHHH-H-Hh
Confidence 566 788888888888888888888776 77777888888888888888888877653 233333322222 2 22
Q ss_pred hcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 383 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 383 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
.....|...+..+...+++.+|++.++...+..+.+.++|.+.+.+...
T Consensus 344 ~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 344 AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2233456667888888999999999999999999999999999887653
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=109.21 Aligned_cols=184 Identities=17% Similarity=0.136 Sum_probs=109.2
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHH
Q 011657 266 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL 344 (480)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 344 (480)
.++++.++...+..++..+. ......+.+.++++ .|. ++.+.++..+...++..++.++.|+++||+|||+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~-s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~ 80 (420)
T PRK09528 6 YLKNPNYWIFSLFFFFFFFI----WSSWFSFFPIWLHDINGL-SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLL 80 (420)
T ss_pred hhcCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 34455555544433333332 22444555555555 788 8999999999999999999999999999999999987
Q ss_pred hhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhccc---ccccceeecccCChhhhhhHHHHHHHHHHHHHHhH
Q 011657 345 GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF---GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALV 421 (480)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~ 421 (480)
.+..+.++....+...... ............+.....+..+ .+....+. +..+ +.++...|.......+|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~~g~~~~~~~~g~~i~ 157 (420)
T PRK09528 81 WIISGLLVLFGPFFIYVFA-PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVS-RRSGFEYGRARMWGSLGWALC 157 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHH-hhccccchhhHHhhhHHHHHH
Confidence 7655544333222110000 0000001111111111111111 11111221 2122 446677888888899999999
Q ss_pred hhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCC
Q 011657 422 TFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 422 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
|.+.+.+.+ .+++..|++.++++++..++.+...++
T Consensus 158 ~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 158 AFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccccc
Confidence 999998877 478888888887777666665554444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=110.42 Aligned_cols=149 Identities=18% Similarity=0.180 Sum_probs=107.0
Q ss_pred HHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHH
Q 011657 294 LYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVV 373 (480)
Q Consensus 294 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (480)
...++++..+.|. ..+..++.+...++..+..++.|+++|.+|||+.++.+.++..++.++.+. .++...++
T Consensus 64 a~~l~~I~~diG~--~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at------A~~~~~~i 135 (599)
T PF06609_consen 64 ASILPYINADIGG--SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT------AQNMNTFI 135 (599)
T ss_pred HHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc------CCcHHHHH
Confidence 4445667777776 466778888899999999999999999999999999999999999988763 33333333
Q ss_pred -HHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 374 -ALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 374 -~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
...+.+.+.+ ...+....++|..|.+.|..+.++..........+++.+...+..+.+|++.|++..+...++++..
T Consensus 136 ag~~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 136 AGMVLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHHHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 3333333322 2223445689999999998887777655555555666666666556789999998887766655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-11 Score=105.77 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=128.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccc
Q 011657 308 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
...+.|+++....+.+++.+++.|.++||+|+|..+++|++++..+.+++++ .+.+..++..-...+..+....
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf------g~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF------GNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH------cchhHHHHHHHHHhhhhHHHHH
Confidence 5678999999999999999999999999999999999999999999998876 3455555555566666655555
Q ss_pred cccceeecccCChhh-hhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCCh
Q 011657 388 PIGWLMISEVFPLRL-RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSF 463 (480)
Q Consensus 388 ~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (480)
....+++++.+|.+. |++++|+.-.+..+|-.++|.+.|.+++..|+..+|++++.++++...+.++..+.++.++
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 666789999999875 6999999999999999999999999999999999999999999998888777665554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.4e-11 Score=112.26 Aligned_cols=337 Identities=18% Similarity=0.133 Sum_probs=176.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHhcC----chHHHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGI 159 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~ 159 (480)
+|+++++.....+...+...+ -+++|.++|-+. ||+-++++.++..++.+..+..+ +.....+.-++..+
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~ 98 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF 98 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 999999999988888887765 677899999763 55556677777766666665533 45566666667777
Q ss_pred HHhH------------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhc-ccC
Q 011657 160 GIGL------------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA 202 (480)
Q Consensus 160 g~g~------------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 202 (480)
|... +|..+++.+.+.. ++|..|.+.+++.++..+..++ .+|
T Consensus 99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 6666 3333444444444 7888888887777765444444 443
Q ss_pred chHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHH-HHHH
Q 011657 203 SPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALII-GAGL 281 (480)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 281 (480)
.++. +. ++. ... .. ++.+... ...++.....++.++.+..+...+ ..++
T Consensus 178 ~~~~---~~-----------~~~-------~~~--~~---~~~~~~~----~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 227 (433)
T PF03092_consen 178 RKVR---PA-----------DEV-------FSF--GK---EEVPCLF----GSFREQLSELWRALQQRAIWQPILFFIFF 227 (433)
T ss_pred cccc---cc-----------chh-------hcc--cc---cccchhh----HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2100 00 000 000 00 0000000 000011122334444443333222 1111
Q ss_pred HHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHh
Q 011657 282 VLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYY 361 (480)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 361 (480)
.............++........++ ++...+....+..++.+++..+......+..-|+++.+..++.++..+.-....
T Consensus 228 ~~~~~~~~~a~~fy~~~~~~~gp~f-s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv 306 (433)
T PF03092_consen 228 FNLPPSISSASSFYFQTDALGGPHF-SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV 306 (433)
T ss_pred HHhccCCCCccEEEEEecccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE
Confidence 1111110000011111111111124 555566666666677777776666655555656666555544433322211100
Q ss_pred hc-c----CCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCc--
Q 011657 362 LF-L----DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGA-- 434 (480)
Q Consensus 362 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~-- 434 (480)
.. + -.+.+..+.--.+........+.|.. .+++|+.|+..-|+..++..++.++|..++..+...+.+..+.
T Consensus 307 ~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~ 385 (433)
T PF03092_consen 307 TRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR 385 (433)
T ss_pred EEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 00 0 01123233333444444555555665 6889999999999999999999999999999998888876652
Q ss_pred ------cHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 435 ------GILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 435 ------~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
....++..++.++...+..+ +|+.+
T Consensus 386 ~~f~~l~~lili~~~~~ll~l~ll~l-Lp~~~ 416 (433)
T PF03092_consen 386 DDFSNLWLLILICSVIQLLPLPLLFL-LPPQK 416 (433)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHH-cCCCc
Confidence 12334444445444444433 44433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-08 Score=92.46 Aligned_cols=341 Identities=17% Similarity=0.094 Sum_probs=188.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHH-HHHHHHHHHHHHHHhc-----C--------ch-H
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELI-LAALLYLVGALVTALA-----P--------DF-I 148 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~-~~~~~~~~~~~~~~~~-----~--------~~-~ 148 (480)
++++....+.+.++..+... ..+.+|+.+|+.+ ||..++ .|.++...+..+..++ . .+ +
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 88999999999988877665 5899999999999 887666 4666666665554442 2 22 2
Q ss_pred --HHHHHHHHHHHHHhHhHHhhhhhhhhhhh-hh-------HHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCch
Q 011657 149 --IMVVGRFVFGIGIGLGGYGIGSLLVDLVA-GW-------RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDM 218 (480)
Q Consensus 149 --~l~~~r~l~G~g~g~~g~~~g~~l~~~~~-~w-------r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~ 218 (480)
...+.-.+.|+|.+..+...-.++.+... .. -|...+.+++.-......++-|-+|..+.+--
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~------- 161 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI------- 161 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH-------
Confidence 22334556677777655555555554221 11 12222222222112222222233332211100
Q ss_pred hhhHHHHHHHHHH--HhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHh
Q 011657 219 QDLRESAISCLCR--LRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYY 296 (480)
Q Consensus 219 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (480)
....-..-.+.- .-+.+....... ...++++......++++..++..++++...++..+..+ .....
T Consensus 162 -~~~a~i~~~l~~ia~wg~E~r~~~~~------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~----~QD~i 230 (403)
T PF03209_consen 162 -QGVALIALLLNLIALWGQEPRRSRRA------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFF----MQDVI 230 (403)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCcccc------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHH----hhHHH
Confidence 000000000000 001110000000 00111122233456667777766666554444433221 11112
Q ss_pred H-HHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh-hhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHH
Q 011657 297 A-ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE-RLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA 374 (480)
Q Consensus 297 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (480)
+ |+=-+-+|+ +..+...+....+.+.+++....+++.. |.++++...+++....+++.++..... ..+.+.....
T Consensus 231 LEPygg~Vfgm-sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~--~~~~~~~~~~ 307 (403)
T PF03209_consen 231 LEPYGGEVFGM-SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP--LGSPWLFRPG 307 (403)
T ss_pred cCCchhHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh--cccchHHHHH
Confidence 2 222344677 8999999999999999999999998776 677778877888888887777654322 3344444444
Q ss_pred HHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh----------hCccHHHHHHHHH
Q 011657 375 LLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL----------LGAGILFYAFGVI 444 (480)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~----------~g~~~~~~~~~~~ 444 (480)
.++++.+.+.. ..-..+...+..++++.|..+|.....+.+...++..+.|.+.|. .+|..+|.+=+++
T Consensus 308 ~~l~G~g~G~f-~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~l 386 (403)
T PF03209_consen 308 VFLLGLGNGLF-TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVL 386 (403)
T ss_pred HHHHHHhhhHH-HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 44444333332 223335677888888999999999999999999999888888773 1244455554555
Q ss_pred HHHHHHhc
Q 011657 445 AVLSLAFI 452 (480)
Q Consensus 445 ~~~~~~~~ 452 (480)
.+++..+.
T Consensus 387 l~~a~~ll 394 (403)
T PF03209_consen 387 LLAALVLL 394 (403)
T ss_pred HHHHHHHH
Confidence 55554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-10 Score=107.15 Aligned_cols=162 Identities=16% Similarity=-0.012 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcch-HHHHHHH-----HHHHHHHHHHHHHHHhhhcCchHHHhhhHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDA-TRVSILL-----GLFKLIMTGLAVLVVERLGRRPLLLGGVSG 349 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 349 (480)
.....+..+........+....|.+.++.+. +..+. .+..+.. .+...++.++.|++.||+|||+.+..+..+
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFP-AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 3444445555555556778888999898887 44443 3332222 222346788999999999999999999988
Q ss_pred HHHHHHHHHHHhhccCCchhH-------HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 350 IVISLFLLGSYYLFLDDVPAV-------AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
..++.+++++. .+... .+...-++.+.......+....++.|.+|+++|+++.++.....+++..+++
T Consensus 96 ~~~~~~l~~~~-----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 96 MASGTLLIAFV-----PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 88887776642 22111 1222222333333333344457899999999999999999988877777766
Q ss_pred hcchhh--------HHhhCccHHHHHHHH
Q 011657 423 FAFSPL--------KDLLGAGILFYAFGV 443 (480)
Q Consensus 423 ~~~~~~--------~~~~g~~~~~~~~~~ 443 (480)
.+.+.+ .+..||+..|++...
T Consensus 171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 665544 356789988887543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=109.83 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=108.1
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
+.+..+.+.+.++.|. +..+.+........ .....++.|++.||+|+|+++.++.++..++.+++.+........+.+
T Consensus 44 y~fsv~s~~L~~~lgl-s~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 44 YAFNLISGAMQARYNL-TQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHHHHHHHHHHhCc-CHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence 4666778888888898 77888877765333 345666789999999999999999999999988776532111112333
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (480)
.+.+..++.+.......+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...+++.+++.++..+
T Consensus 122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 33333333333333233334456788887 779999999999999999876655555544 3566677777776665555
Q ss_pred hcCCCC
Q 011657 451 FIFXXX 456 (480)
Q Consensus 451 ~~~~~~ 456 (480)
+.+.+.
T Consensus 200 l~~~~v 205 (591)
T PTZ00207 200 LAIVFM 205 (591)
T ss_pred HHHhhe
Confidence 544433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=100.96 Aligned_cols=137 Identities=12% Similarity=0.005 Sum_probs=111.3
Q ss_pred HHHHhHHHHHHhcCCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 292 SVLYYAASILQSAGFSAASD-ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
...+..|.+.++.|+ +..+ .+.+......+..+..+++|+++||+|.|+++..+.+...+..+++++. ....
T Consensus 44 n~s~a~p~L~~elgl-T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa------~Sl~ 116 (511)
T TIGR00806 44 GESFITPYLLTVLNF-TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG------TSVW 116 (511)
T ss_pred hHHHHHHHHHHHcCC-CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 556677888889999 8888 9999999999999999999999999999999999988888887777652 2344
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGIL 437 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~ 437 (480)
.+.+.-++.+.+..... ....++...+|+++|+++.|+.+....+|.++++.+.+. ....||+..
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 44444444444444444 556899999999999999999999999999999999998 556787763
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=105.98 Aligned_cols=169 Identities=17% Similarity=0.073 Sum_probs=121.7
Q ss_pred HHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-----cCch-HHHhhhHHHHHHHHHH
Q 011657 284 FQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-----GRRP-LLLGGVSGIVISLFLL 357 (480)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~ 357 (480)
+.+.........-+|.++++.|. +..+.++....... .+..++.|+++||+ |||+ .+..+..+.+++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~-~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEGL-DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 33444555667788999999999 89999988666655 68889999999999 7765 6777777776666655
Q ss_pred HHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh-hCccH
Q 011657 358 GSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-LGAGI 436 (480)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~g~~~ 436 (480)
.+. ......+.+....++.........+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+. .||+.
T Consensus 86 ~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 86 AFC---PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred Hhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 432 11222333333323333444445566778999999999999999999999999999999998888885 59999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC
Q 011657 437 LFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
.|++.+++.++..+... ..+|+
T Consensus 163 ~f~i~a~~~l~~~l~~~-~~~e~ 184 (402)
T PRK11902 163 TYLLMAGLMLAGALTTL-WAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCC
Confidence 99988887766555433 34443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.5e-10 Score=104.75 Aligned_cols=160 Identities=10% Similarity=-0.089 Sum_probs=100.1
Q ss_pred HHHhHHHH-HHhcCCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhhcCchHHH-hhhHHHHHHHHHHHHHhhccCCchh
Q 011657 293 VLYYAASI-LQSAGFSAASDATRVSILLGL-FKLIMTGLAVLVVERLGRRPLLL-GGVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 293 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
+....+.+ .++.|. +..+.++..+...+ +...+.+.+++ .||+|||+.+. .+.+...++..++.. .++.+
T Consensus 34 ~~p~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~ 106 (393)
T PRK15011 34 QTPTLSIFLTDEVHA-RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW-----NRNYF 106 (393)
T ss_pred HHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH-----hhHHH
Confidence 33444444 456787 88888888766555 44455555555 99999998754 444443344443332 12222
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCChhhh--hhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLR--GRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 447 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (480)
..++...+..+ ......|....+..+..+++.| +...++.+....+|..++|.+.+.+.++.||+..|++.+.+.++
T Consensus 107 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~ 185 (393)
T PRK15011 107 VLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIV 185 (393)
T ss_pred HHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 22222222222 2334455555666666555444 23447778888999999999999999999999999988887777
Q ss_pred HHHhcCCCCCCCC
Q 011657 448 SLAFIFXXXXXXX 460 (480)
Q Consensus 448 ~~~~~~~~~~~~~ 460 (480)
..+..++..||.+
T Consensus 186 ~~~~~~~~~~~~~ 198 (393)
T PRK15011 186 CGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHhhcCccC
Confidence 6666555556543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=104.08 Aligned_cols=168 Identities=17% Similarity=-0.014 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHH-hc--CCCCCcchHHHH-----HHHHHHHHHHHHHHHHHHhhhcCchHHHhh
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQ-SA--GFSAASDATRVS-----ILLGLFKLIMTGLAVLVVERLGRRPLLLGG 346 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 346 (480)
......+..+........+.+..+.+.. +. +. ++. .+... ....++..++.++.|+++||+|||+.+..+
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQV-SPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 3333333444443333444445554433 32 34 443 33332 233455668888899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccCCchh------HHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHh
Q 011657 347 VSGIVISLFLLGSYYLFLDDVPA------VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 420 (480)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i 420 (480)
..+.+++.++.++. ++... ..+...-++.+....+..+....++.|.+|+++|+...+..+....+|..+
T Consensus 101 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 101 VWMMGIATALIGLL----PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 88888887776642 11110 123333333444444444555689999999999999999988888888888
Q ss_pred HhhcchhhH--------HhhCccHHHHHHHHHHHHH
Q 011657 421 VTFAFSPLK--------DLLGAGILFYAFGVIAVLS 448 (480)
Q Consensus 421 ~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~ 448 (480)
++.+...+. ...||+..|++.++..++.
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~ 212 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA 212 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH
Confidence 776665544 2478999998877665443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=104.96 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=112.7
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-----cCchHH-HhhhHHHHHHHHHHHHHhhccC
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-----GRRPLL-LGGVSGIVISLFLLGSYYLFLD 365 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 365 (480)
......|.+.++.|. +..+.++.... .+...+ .++.|+++||+ |||+.+ +.+.++.+++...+.+. . +
T Consensus 6 ~~~~~~~~~~~~~g~-s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--~-~ 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNV-SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--V-P 79 (356)
T ss_pred hHHhHHHHHHHHcCC-CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--C-c
Confidence 445567888899999 88888888654 444444 88999999998 888864 45555555554444321 1 1
Q ss_pred CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC--------ccHH
Q 011657 366 DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG--------AGIL 437 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g--------~~~~ 437 (480)
....+.+....+..........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..| |+..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 12222222222233333333445666889999999999999999999999999999999999888888 9999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC
Q 011657 438 FYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
|++.+++.++..+..++..+|.
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 9888887777665555444554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=104.36 Aligned_cols=136 Identities=10% Similarity=-0.041 Sum_probs=100.6
Q ss_pred hhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh
Q 011657 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
......+.|.+.++.+. +..+.++..+...++..++.++.|++.||+|||+++..+..+..++.+++.... ...++
T Consensus 42 ~~~~~~~~p~i~~~~~~-s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~---~a~~~ 117 (438)
T PRK10133 42 NNLNDILLPQFQQAFTL-TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA---EIMNY 117 (438)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH---hcCCH
Confidence 34666788888888898 889999999999999999999999999999999999999999888887653211 12333
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 429 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 429 (480)
..+....+..+.......+....++.|..|++.++...++.+....+|..+++.+.+.+.
T Consensus 118 ~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333323333444567778777776767889999999999999998766543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-10 Score=119.22 Aligned_cols=188 Identities=15% Similarity=-0.011 Sum_probs=118.4
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q 011657 264 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 342 (480)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 342 (480)
+++++++.++++++..++..+........+..+..+.+.. .+..+....++..+...+..++..+++|+++||+|||++
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 3466777777766655555444322222222222222221 111112346677778888899999999999999999997
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
+.....+..+...+...... . .+.+.+++..++.+.....+.|...+++.+.+|++.++.++|+.++...+|.++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~--~-~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp 161 (1140)
T PRK06814 85 AKILKFAEIGIAALAIYGFH--L-NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGT 161 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH--H-hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence 64322222111111111111 1 23444444555555555566788889999999999999999999999999999999
Q ss_pred hcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 423 FAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.+.|.+.+..+|+..|+..+.+.+++.++.++
T Consensus 162 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1140)
T PRK06814 162 IIGGLATISGNFVILVALLMGIAVLGWLASLF 193 (1140)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888774444444444444333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=102.26 Aligned_cols=184 Identities=15% Similarity=0.083 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh----hhcCchHHHhh-hH
Q 011657 274 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE----RLGRRPLLLGG-VS 348 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~ 348 (480)
+++.........++. +.....+.+.++++.|. +....+.......+.+++..++.|+++| |+|||+.++.+ ..
T Consensus 5 ~li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFG-WALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 333444444444443 34556677778899999 8899999999999999999999999999 59999988764 44
Q ss_pred HHHHHHHHHHHHhhcc--------CCc-h---hHHHHHHHHHHHHHhcccccccceeecccCChhhh--hhHHHHHHHHH
Q 011657 349 GIVISLFLLGSYYLFL--------DDV-P---AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLR--GRGLSVAVLVN 414 (480)
Q Consensus 349 ~~~~~~~~~~~~~~~~--------~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~ 414 (480)
...+++.++....... ... . +..+..+.+..........|. -+++.|..|+++| +.+.++.+...
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHH
Confidence 4555555443311000 000 1 111222222223333333444 4899999998865 57899999999
Q ss_pred HHHHHhHhhcchhh--HHhh-------------CccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 415 FGANALVTFAFSPL--KDLL-------------GAGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 415 ~~g~~i~~~~~~~~--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
++|+.+++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99999999887754 2211 4566888888888888888887777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=112.88 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=115.8
Q ss_pred hHHHHHHhcCCCC---CcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 296 YAASILQSAGFSA---ASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 296 ~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
+.+.+.++.+. + ..+.++..+...++.+++.++.|+++||+|||+++..+.++..++.++..+ . .+...+
T Consensus 111 ~~~~i~~e~~l-~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~-----~-~~~~~~ 183 (505)
T TIGR00898 111 FSSTIVTEWDL-VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF-----S-PNYTVF 183 (505)
T ss_pred ccccEEEEecc-eechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----c-ccHHHH
Confidence 44555667777 5 778899999999999999999999999999999999988888777766553 1 233444
Q ss_pred HHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhc
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 452 (480)
....++.+.......+...+++.|.+|+++|+.+.++......+|.++++.+...+.+ |++.+++.++..++..+..
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555566777899999999999999999988888898888877655443 7888888877776666555
Q ss_pred CCCCCCC
Q 011657 453 FXXXXXX 459 (480)
Q Consensus 453 ~~~~~~~ 459 (480)
++.+|+
T Consensus 261 -~~~~es 266 (505)
T TIGR00898 261 -WFVPES 266 (505)
T ss_pred -HhcCCC
Confidence 345654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=104.71 Aligned_cols=148 Identities=20% Similarity=0.156 Sum_probs=107.7
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
......|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.. . ..+.+..
T Consensus 18 ~~~~~lp~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-----~~~~~~l 90 (355)
T TIGR00896 18 SVGPLLPQIRSALGM-SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-----APGTALL 90 (355)
T ss_pred cCcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-----hccHHHH
Confidence 445577888899999 89999999999999999999999999999999999988877766655543 1 2233333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC--ccHHHHHHHHHHHHH
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG--AGILFYAFGVIAVLS 448 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 448 (480)
++..++.+.+.+. ..+.....+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+ |+..|.+.+++.++.
T Consensus 91 ~~~~~~~g~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 91 FAGTALIGVGIAI-INVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHH-HhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3332222222222 22333456677776 679999999999999999999999888887653 676776666554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=104.73 Aligned_cols=164 Identities=16% Similarity=0.102 Sum_probs=114.0
Q ss_pred ChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-----cCchH-HHhhhHHHHHHHHHHHHHhh
Q 011657 289 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-----GRRPL-LLGGVSGIVISLFLLGSYYL 362 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~ 362 (480)
.........|.++++.|. +..+.+... ..... .++.++.++++||+ |||+. +..+.+..+++...++..
T Consensus 27 ~~~~~~~~l~~~l~~~g~-~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~-- 101 (491)
T PRK11010 27 PLALTSGTLQAWMTVENI-DLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL-- 101 (491)
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc--
Confidence 334556677888888888 777777752 22222 26889999999999 98875 556666655555555432
Q ss_pred ccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH-hhCccHHHHHH
Q 011657 363 FLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-LLGAGILFYAF 441 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~g~~~~~~~~ 441 (480)
.+..+...+....+..+.......+...++..|.+|+++|+.+.++......+|..+++.+.+.+.+ ..||+..|++.
T Consensus 102 -~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~ 180 (491)
T PRK11010 102 -EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM 180 (491)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 1222333333333333333334455666899999999999999999999999999999999999988 57999999998
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 011657 442 GVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~ 459 (480)
+++.++..+..++ .+|+
T Consensus 181 a~l~ll~~l~~~~-~~e~ 197 (491)
T PRK11010 181 AALLIPCIIATLL-APEP 197 (491)
T ss_pred HHHHHHHHHHHHh-cCCC
Confidence 8877776555444 4554
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=103.53 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=102.4
Q ss_pred hHHHHhHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC--Cc
Q 011657 291 PSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD--DV 367 (480)
Q Consensus 291 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 367 (480)
..+..+.|.++. +.|. ++.+.++..+...++..++.++.|+++||+|||+.+..+....+++...+........ ..
T Consensus 19 ~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (396)
T TIGR00882 19 SAYFPFFPIWLHDVNGL-SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSN 97 (396)
T ss_pred HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344446666655 4688 8999999999999999999999999999999999988766555443332221111000 01
Q ss_pred hhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHH
Q 011657 368 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 447 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (480)
.........++.+.......+....+..+..+ .++...|.......+|..++|.+.+.+.+ .+|+..|++.+.+.++
T Consensus 98 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~ 174 (396)
T TIGR00882 98 ILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALI 174 (396)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHH
Confidence 11111111122222222223333344444322 23456677888889999999999887765 5899999888877776
Q ss_pred HHHhcCCCCCC
Q 011657 448 SLAFIFXXXXX 458 (480)
Q Consensus 448 ~~~~~~~~~~~ 458 (480)
..++.+...++
T Consensus 175 ~~~~~~~~~~~ 185 (396)
T TIGR00882 175 LMLLLMFAKPK 185 (396)
T ss_pred HHHHHHHhCCC
Confidence 66554443343
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=101.30 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=96.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccc
Q 011657 308 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
+...+|++.+.+.+..++.++..|.++||+|||.++.++.+..++...+.+. +.+...++..-+..+.+.....
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~Gi~kgnl~ 139 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLGGIFKGNLS 139 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhccCchH
Confidence 4556899999999999999999999999999999999999888887777654 3344334443455555555554
Q ss_pred cccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH
Q 011657 388 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 430 (480)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 430 (480)
+..++++|++++++|+.+++.++....+|.++||.+.|++..
T Consensus 140 -v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 -VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 445999999999999999999999999999999999999887
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-08 Score=91.75 Aligned_cols=317 Identities=17% Similarity=0.150 Sum_probs=180.9
Q ss_pred ccCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----
Q 011657 89 YDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL---- 163 (480)
Q Consensus 89 ~~~~~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~---- 163 (480)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++..+.++...+-+..++-|++.+.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay 114 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAY 114 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHH
Confidence 578888775 566677778888999999999999999999999999999999999999999999999999999988
Q ss_pred -------------------------hHHhhhhhhhh-----hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhccc
Q 011657 164 -------------------------GGYGIGSLLVD-----LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK 213 (480)
Q Consensus 164 -------------------------~g~~~g~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 213 (480)
+|..+++++.+ ...+.+...++......+.++..+++|..++-..-++..
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~ 194 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKP 194 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccC
Confidence 44444444443 222566666666665555666667777765422211100
Q ss_pred ccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhh---hhhhHHHHHHHHHHHHHhhCh
Q 011657 214 RKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG---KCLKALIIGAGLVLFQQITGQ 290 (480)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 290 (480)
...+ + ..+...++..+..+.. ++..+..+.........++.++++ -...+.++...+.+....+++
T Consensus 195 ~~~~-----~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy 263 (412)
T PF01770_consen 195 PAEQ-----D-----ANESESDKMNESPESS-SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGY 263 (412)
T ss_pred cccc-----c-----cccccccccccccccc-cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHH
Confidence 0000 0 0000000000000000 000000000001111111222221 122234444555666666677
Q ss_pred hHHHHhHHHHHHhc---CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHH--HHHHHHHHHHhhccC
Q 011657 291 PSVLYYAASILQSA---GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGI--VISLFLLGSYYLFLD 365 (480)
Q Consensus 291 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 365 (480)
..+..|...+.++. .. ....-|..-....+.+.++.+..|++..++.+-.-+..+.... +..++++.. .
T Consensus 264 ~qv~nYvQ~LW~~v~~~~~-~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~-----t 337 (412)
T PF01770_consen 264 YQVINYVQSLWDTVPPSDN-ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF-----T 337 (412)
T ss_pred HHHHHHHHHHHHhcCCCCC-CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-----h
Confidence 77778887777776 22 3344566777777778888888888855555543333333322 333333322 3
Q ss_pred CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhh
Q 011657 366 DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 423 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~ 423 (480)
++.|......+++...+..... +...-++.....+.-|...|+..++..+-..+...
T Consensus 338 ~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT~ 394 (412)
T PF01770_consen 338 GNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTILTL 394 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHheEE
Confidence 4566666666666666665443 33334444445566677777777665554444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-09 Score=100.38 Aligned_cols=150 Identities=10% Similarity=-0.051 Sum_probs=102.7
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCch----HHHhhhHHHHHHHHHHHHHhhccCC
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP----LLLGGVSGIVISLFLLGSYYLFLDD 366 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (480)
....-++|.++++.|. +..+.++..+...+...++.++.|+++||+||+. .+.+...+ ....+. . ..
T Consensus 21 g~~~p~l~~~l~~~g~-s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~---~~~~~~----~-~~ 91 (382)
T PRK11128 21 GVFLPFWSVWLKGQGY-TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL---FAVAFW----F-GA 91 (382)
T ss_pred HHHhhhHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH---HHHHHH----H-hc
Confidence 4556677888899999 9999999999999999999999999999999842 22211111 111111 1 12
Q ss_pred chhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHH
Q 011657 367 VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446 (480)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (480)
++.+.+.......+.......|...++..+. .++|+.+.+.......+|..++|.+.+.+.++.||+..|++.++..+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~ 169 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVA 169 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 3333333333323333344455554555554 35578888889999999999999999999999999999887776555
Q ss_pred HHHHh
Q 011657 447 LSLAF 451 (480)
Q Consensus 447 ~~~~~ 451 (480)
+..+.
T Consensus 170 ~~~~~ 174 (382)
T PRK11128 170 SMLLG 174 (382)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=115.64 Aligned_cols=118 Identities=16% Similarity=0.032 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhccccccc
Q 011657 311 DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIG 390 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (480)
..++..+...++.+++.+++|+++||+|||++++.+.++.++..++..+... . ...+.+++..++.+.......+..
T Consensus 48 ~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY--L-GWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH--H-ccHHHHHHHHHHHHHHHHhhchHH
Confidence 3577788888899999999999999999999998877665555444333211 1 223334444444445555556777
Q ss_pred ceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 391 WLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 391 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
.+++.|.+|++.|+.++|+......+|.++++.+.+.+.+.
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999998876
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=103.42 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=121.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccc
Q 011657 308 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
++.+-+++.+....+.+++.+.+|++.||+|.|+++..+.++.+++.++..+... .....+++.-++.+.......
T Consensus 71 s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 71 SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----IGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----hcchhhHHHHHHhHHHHhHHH
Confidence 6778899999999999999999999999999999999999998888888776432 222244555555555555556
Q ss_pred cccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh-hCccHHHHHHHHHHHHHHHhcCCCCC
Q 011657 388 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-LGAGILFYAFGVIAVLSLAFIFXXXX 457 (480)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 457 (480)
|....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||...|++.+++.++..++.+.+..
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 77779999999999999999999999999999999999999998 99999999999988777666544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-10 Score=87.71 Aligned_cols=102 Identities=25% Similarity=0.478 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----------------
Q 011657 100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL---------------- 163 (480)
Q Consensus 100 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~---------------- 163 (480)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 4556788899999999999999999999999999999999999999999999999999998876
Q ss_pred ------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHH-HHhcccC
Q 011657 164 ------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM-GMWWLPA 202 (480)
Q Consensus 164 ------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e 202 (480)
+|+.+++.+.+.. +|++.|++.++..++..+ ..++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4555555555444 899999988887776444 4444554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-09 Score=98.97 Aligned_cols=152 Identities=10% Similarity=0.003 Sum_probs=104.3
Q ss_pred hChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHH-HHHHHHHHHhhccCC
Q 011657 288 TGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIV-ISLFLLGSYYLFLDD 366 (480)
Q Consensus 288 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 366 (480)
.......-+.|.++++.|. +..+.++..+...+...++.++.+.++||++|+........+.. +..+.+.. ..+
T Consensus 18 ~~~~~~~p~l~~~l~~~g~-s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 92 (382)
T TIGR00902 18 CAYGIFLPFFPAWLKGIGL-GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA----GAH 92 (382)
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH----hhh
Confidence 3345666678899999999 99999999999999999999999999999998543322111111 11111111 122
Q ss_pred chhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHH
Q 011657 367 VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 446 (480)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (480)
+.+..++...+...+.+ ...|...++..+. .++|+.+.|.......+|.+++|.+.+.+.+..||+..|++.+.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~-~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~ 169 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFS-AGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA 169 (382)
T ss_pred hHHHHHHHHHHHHHHHc-cchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 33333333333333333 3456665665442 46789999999999999999999999999999999998887765533
Q ss_pred H
Q 011657 447 L 447 (480)
Q Consensus 447 ~ 447 (480)
+
T Consensus 170 ~ 170 (382)
T TIGR00902 170 F 170 (382)
T ss_pred H
Confidence 3
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=100.47 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=114.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-cCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhc
Q 011657 306 FSAASDATRVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQL 384 (480)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (480)
+ +.+++.-....+....-+..+++||++||+ |+|+++..+.++++++.++++... ........+.+.+. ....+
T Consensus 58 ~-~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I-~iG~G 132 (498)
T COG3104 58 F-DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALI-IVGTG 132 (498)
T ss_pred c-ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHH-Hhccc
Confidence 7 777888888888888888999999999995 999999999999999999887510 01222333333333 34444
Q ss_pred ccccccceeecccCChh--hhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 385 SFGPIGWLMISEVFPLR--LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 385 ~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
.+=+...+++.|++|++ +|-.+.++.++..++|+.++|.+.+++.++.||...|...++-..++.+..+...+..
T Consensus 133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 45566668899998753 4777888999999999999999999999999999999998888888887776655433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=96.37 Aligned_cols=177 Identities=18% Similarity=0.044 Sum_probs=115.4
Q ss_pred HHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHH--HHHHHHHHHHHHHH-HHHHhhhcCchHHHhhhHHH-HHHH
Q 011657 279 AGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVS--ILLGLFKLIMTGLA-VLVVERLGRRPLLLGGVSGI-VISL 354 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~g~~~~~~~~~~~~-~~~~ 354 (480)
+...++.+...+.....+.|.++++.|. +..+.++.. ....+..++..++. ++..||+|||+..+....+. .+..
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~-~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~ 84 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLREDGA-PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL 84 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence 3344455555566777889999999998 888999873 55677777777777 45789999988865554332 2222
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCc
Q 011657 355 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGA 434 (480)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~ 434 (480)
..+... .........................+....+..|..+++.++...+.......+|..+++...+.+.+..||
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 85 ASLALV--GPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHcC--CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 222211 111121222222222233333334445556677777877778888888777788999999888899999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCC
Q 011657 435 GILFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
+..|++.+++.++..+..++..++
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999988877666655444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-09 Score=100.67 Aligned_cols=177 Identities=15% Similarity=0.063 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHH
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 352 (480)
|.+.+..++...........+..+.+.+.++.+. +..++++..++......+..++.+.+.||+|.|.+.+.|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~-s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGS-SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCC-CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 3344444444444444444445566777788888 777799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCchhHHHHH-HHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 353 SLFLLGSYYLFLDDVPAVAVVA-LLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
++++..+. .+.+..++. ..+.+.+.+..+.|.. ..+...|+ ++|+.+.|+......+|.++.|.+...+.+.
T Consensus 124 g~~lssF~-----~~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 124 GLLLSSFA-----TSLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred HHHHHHHH-----hhHHHHHHHHHHHhhccchhhhcchh-hhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence 99887652 233333322 2333344444455554 56666666 7899999999999999999999999999999
Q ss_pred hCccHHHHHHHHHHHHHHHhcCCCCC
Q 011657 432 LGAGILFYAFGVIAVLSLAFIFXXXX 457 (480)
Q Consensus 432 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 457 (480)
.||+..+++.+.+.+-..+....++|
T Consensus 197 ~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 197 YGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999988777777666665
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-06 Score=81.97 Aligned_cols=156 Identities=17% Similarity=0.039 Sum_probs=98.0
Q ss_pred ccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 011657 261 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR 340 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 340 (480)
..++.-++.+-+..-+-..++++. .. .+...+..|+...|+ ++...+..-....+.++.+.++..++.+|+|..
T Consensus 250 ~~w~~Y~~q~vflas~alalLY~T-VL----sf~~lmt~yl~~~G~-s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlv 323 (432)
T PF06963_consen 250 RGWRTYFRQPVFLASFALALLYFT-VL----SFGGLMTAYLKSQGY-SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLV 323 (432)
T ss_pred ccHHHHHhCHHHHHHHHHHHHHHH-Hh----cCcHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 345555555544433332233322 22 223455666777899 899999999999999999999999999999988
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCCc-hhHH---HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHH
Q 011657 341 PLLLGGVSGIVISLFLLGSYYLFLDDV-PAVA---VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG 416 (480)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 416 (480)
+.-.++.....+++.+....++.+... +... ++......=.+--++-.....+.+|..|+++||...|+-+..+++
T Consensus 324 r~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~l 403 (432)
T PF06963_consen 324 RAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSL 403 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHH
Confidence 887777776665555544433333322 1211 111111111111122233346889999999999999999999887
Q ss_pred HHHhHh
Q 011657 417 ANALVT 422 (480)
Q Consensus 417 g~~i~~ 422 (480)
...+.-
T Consensus 404 f~ll~~ 409 (432)
T PF06963_consen 404 FELLSF 409 (432)
T ss_pred HHHHHH
Confidence 765433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-09 Score=99.34 Aligned_cols=163 Identities=19% Similarity=0.179 Sum_probs=105.4
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----hcCch-HHHhhhHHHHHHHHHHHHHhhccCCc-hh
Q 011657 296 YAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER----LGRRP-LLLGGVSGIVISLFLLGSYYLFLDDV-PA 369 (480)
Q Consensus 296 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 369 (480)
..+++.+..|. ++.+.+...+...+...+..++.|+++|| +|||+ .++.+....+++.+++.......... ..
T Consensus 22 l~~~~~~~~g~-s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 22 LLFFYTDVLGL-SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHHHccCC-CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 34444456788 89999999999999999999999999998 56644 55566666666655543211000001 11
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccC-ChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH-------hhCccHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVF-PLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-------LLGAGILFYAF 441 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-------~~g~~~~~~~~ 441 (480)
+......++..+......|. .++..|.. ++++|++..++.+....+|+.+++.+.+.+.. ..+|+..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPY-WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHhhcccH-hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 22222233333333322233 36777776 56889999999888888888777776666553 34677788888
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 011657 442 GVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~ 460 (480)
+++.++..++.++..+|++
T Consensus 180 ~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHcCCEecC
Confidence 8877777666655566543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=94.92 Aligned_cols=131 Identities=18% Similarity=0.036 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh--HHHHHHHHHHHHHhcccccccceeecccC
Q 011657 321 LFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA--VAVVALLLYVGCYQLSFGPIGWLMISEVF 398 (480)
Q Consensus 321 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+...++.++.|+++||+|||+++..+.++..++.++............+ ..+....+..+.......+....++.|.+
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~ 125 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA 125 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence 3335688999999999999999999988888877766542100000000 11222223333333334455568899999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHhHhhcchhhH--------HhhCccHHHHHHHHHHHHHHHh
Q 011657 399 PLRLRGRGLSVAVLVNFGANALVTFAFSPLK--------DLLGAGILFYAFGVIAVLSLAF 451 (480)
Q Consensus 399 p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~ 451 (480)
|+++|+...++.+....+|..+++.+.+.+. +..+|+..+++.+.+.+++...
T Consensus 126 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 126 PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887765543 3467888887776666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=87.28 Aligned_cols=142 Identities=18% Similarity=0.091 Sum_probs=104.2
Q ss_pred hhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCC
Q 011657 287 ITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDD 366 (480)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (480)
....+.+..|.|.+.+..|+ +..+...+.....++..+| ++.|.+.|++|.+.++.++.+...++..++.........
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~-sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~ 92 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGY-SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP 92 (250)
T ss_pred cCcccchhhhhHHHHHHhCC-CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 34456788899999999999 9999999999999998865 888999999999999999999999988877654433222
Q ss_pred -chhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 367 -VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 367 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
.+.+.+.......+.....+.........+.+| ++||++.|+.-....+++++-..+...+.+.
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 233333333333322222223333345567898 6799999999999999999888877766654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.7e-09 Score=101.42 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=117.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccc
Q 011657 308 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
+.....+..++..++..+|.++.|.++||+|||+++..+.++..++.++.++ ..++..+..+-++.+.+..+..
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~------a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF------APNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHhhccchh
Confidence 5667888899999999999999999999999999999999999888876664 3555666666666666666666
Q ss_pred cccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 388 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
...+.+..|.+++++|+.+..+ ..+...++.+++...+++.. +|++.+++.....++..+. +++.+|.+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 7778999999999999999999 88888888999998888887 8888888888877766665 44455554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=94.01 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=115.5
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 011657 302 QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGC 381 (480)
Q Consensus 302 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (480)
++.+. ...+-+...+.+.++.+++.++++.+.||++-.+.+....++..+..++-.. .++...++++-++.+.
T Consensus 74 edl~~-~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------~~s~~~~ialr~llGl 146 (495)
T KOG2533|consen 74 EDLKL-VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------VHSFPGLIALRFLLGL 146 (495)
T ss_pred cccch-hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHH
Confidence 34445 6678899999999999999999999999999555544433332222221111 2445555555566666
Q ss_pred HhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH------HhhCccHHHHHHHHHHHHHHHhcCCC
Q 011657 382 YQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK------DLLGAGILFYAFGVIAVLSLAFIFXX 455 (480)
Q Consensus 382 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (480)
+..+..|....++...+.+++|+.-+|+.+....+|+++|+.+...+. ...||++.|++-+++.++..++.+++
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence 666666777789999999999999999999999999999999888764 34689999999999999999888888
Q ss_pred CCCCCC
Q 011657 456 XXXXXX 461 (480)
Q Consensus 456 ~~~~~~ 461 (480)
+|+...
T Consensus 227 lp~~P~ 232 (495)
T KOG2533|consen 227 LPDNPS 232 (495)
T ss_pred ecCChh
Confidence 876544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.9e-08 Score=85.81 Aligned_cols=159 Identities=12% Similarity=-0.028 Sum_probs=118.1
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
......|.+.+..+. +..++++.......+..+..+..+++.+|+|+|+.++.+..++++++.++.-. .....+..
T Consensus 31 l~diLip~l~~~f~l-s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA---a~~~~y~~ 106 (422)
T COG0738 31 LNDILIPHLKEVFDL-TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA---ASSKSYGF 106 (422)
T ss_pred cchhhHHHHHHHhCc-cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hhhhhHHH
Confidence 445567888777888 89999999999999999999999999999999999999999999999887421 11222322
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh-------------------h
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-------------------L 432 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-------------------~ 432 (480)
.+...+..+............++..+.|++..+.-+.+...++.+|++++|.+.+.++.+ .
T Consensus 107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 222222222222233445557888898988888899999999999999999999988872 1
Q ss_pred CccHHHHHHHHHHHHHHHhcCC
Q 011657 433 GAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 433 g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.++.++...+...++..+....
T Consensus 187 ~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh
Confidence 2556777777666665555443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=94.67 Aligned_cols=112 Identities=13% Similarity=0.207 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHhH----
Q 011657 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGL---- 163 (480)
Q Consensus 92 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~g~g~---- 163 (480)
+..+.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999877776642 245677789999987665
Q ss_pred -------------------------------hHHhhhhhhhhhh-----hhhHHHHhchhHHHHH-HHHHHhcccCc
Q 011657 164 -------------------------------GGYGIGSLLVDLV-----AGWRYMYGASTPLAVI-MGMGMWWLPAS 203 (480)
Q Consensus 164 -------------------------------~g~~~g~~l~~~~-----~~wr~~f~~~~~~~~~-~~~~~~~~~e~ 203 (480)
+|+.+++.+.+.. .||+..|++.++..++ .++..++++|+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6777777776653 2699999998888777 45555567766
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.5e-08 Score=94.25 Aligned_cols=141 Identities=19% Similarity=0.087 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccc
Q 011657 312 ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGW 391 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
.+++.+...++..++.++.|+++|++|||+.+.++.+...++.++.... .+.....+.-++.+.+.+.. ..+..
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~-~~~~p 164 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGA-SVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhh-hhcch
Confidence 3799999999999999999999999999999999999999999888763 23333333333333333333 34555
Q ss_pred eeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh--CccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 392 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL--GAGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 392 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
.+.+|..|++.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||+.
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 899999999999999999999888776666 5666666554 7887777777777766666 45566653
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-06 Score=79.25 Aligned_cols=321 Identities=15% Similarity=0.105 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhHhHHhhhhhhhhhh---
Q 011657 100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSLLVDLV--- 176 (480)
Q Consensus 100 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~g~~~g~~l~~~~--- 176 (480)
.++-+....+.+++.+.+.|+.|.|..++++...+....+..-+ +|-+.+++.-.+.|+|.+.+-..=|.++.++.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77778889999999999999999999999999999887766644 55677888999999999984444444554321
Q ss_pred -----hhhHHHHhchhHHHH-HHHHHHhcccC---chHHHHHhcccccCchhh-hHHHHHHHHHHH---hCCCCCCCChh
Q 011657 177 -----AGWRYMYGASTPLAV-IMGMGMWWLPA---SPRWLLLCAMKRKGDMQD-LRESAISCLCRL---RGQSIGDSAPT 243 (480)
Q Consensus 177 -----~~wr~~f~~~~~~~~-~~~~~~~~~~e---~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~ 243 (480)
.+-.|.+.-...+.. +.+.......+ .+.....+...+.. ... ...-....+... .-......+..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~ 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVL-FIDFEIKVLFGVLLAISVLSIINFDFLPSK 213 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchh-hhhHHHHHHHHHHHHHHHHHhhheeecCcc
Confidence 122222222211111 11111111111 11000000000000 000 000000000000 00000000000
Q ss_pred hHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH--hcCCCCCcchHHHHHHHHH
Q 011657 244 EVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ--SAGFSAASDATRVSILLGL 321 (480)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~ 321 (480)
......+. .+.......+..++.-..++++......+...+.-......|...+.- ..+..+..-.+......++
T Consensus 214 ~~~~~~~~---~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~ 290 (461)
T KOG3098|consen 214 DVVNCKSS---SETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGL 290 (461)
T ss_pred chhhhhhh---ccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhH
Confidence 00000000 001111222333332222232222222211111111111222222211 2233233445666677777
Q ss_pred HHHHHHHHHHHHHhh---hcCchHHHhhhHHHHHHHHHHHHHhhccCC------------chhHHHHHHHHHHHHHhccc
Q 011657 322 FKLIMTGLAVLVVER---LGRRPLLLGGVSGIVISLFLLGSYYLFLDD------------VPAVAVVALLLYVGCYQLSF 386 (480)
Q Consensus 322 ~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 386 (480)
+.+++....+.+.+| +|+++++.++..+..+.+++..+......+ ........+.+..+..-..+
T Consensus 291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~ 370 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF 370 (461)
T ss_pred HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence 888888888888765 577888888887777776665443221110 11333334444555555566
Q ss_pred ccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcch
Q 011657 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFS 426 (480)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~ 426 (480)
....+.++....| +.|..+.++.-+-..++..++-...+
T Consensus 371 ~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 371 NTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6677788888886 77999999888888877766555544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=88.00 Aligned_cols=144 Identities=18% Similarity=0.073 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccce
Q 011657 313 TRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWL 392 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (480)
+...+...+++++|.++.++++||+|||..+.++.++..++.+++..... .+.....++.-++.+...+.... ....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~--~~~~e~li~GR~i~Gl~~gl~~~-~~pm 139 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS--APSFEMLILGRLIVGLACGLSTG-LVPM 139 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence 44567888999999999999999999999998888887777776665332 22333333333333333333333 4447
Q ss_pred eecccCChhhhhhHHHHHHHHHHHHHHhHhhcc-hhhHHh-hCccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 393 MISEVFPLRLRGRGLSVAVLVNFGANALVTFAF-SPLKDL-LGAGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 393 ~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
++.|..|.+.||....+......+|..++..+. ..+.+. ..|...+.+..+.+++..+...+ .||..
T Consensus 140 yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~-~PESP 208 (485)
T KOG0569|consen 140 YLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF-LPESP 208 (485)
T ss_pred HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc-CCCCc
Confidence 999999999999999999988888888885443 333322 33555555555555555555444 66653
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.5e-07 Score=84.99 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCC
Q 011657 320 GLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP 399 (480)
Q Consensus 320 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 399 (480)
++..++..+..|.++||+|||..+....+...+..+.+.+. .++.++ ..-..+++... .....++++|...
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------~~~~~~-~~~l~g~~~~~-~s~~~a~vadis~ 142 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------GYWFFL-LLGLSGGFSAI-FSVGFAYVADISS 142 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------HHHHhh-hcccccchhhh-hhhhhhheeeccc
Confidence 67888899999999999999999988877777776665541 233333 22222222222 3455689999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChhh
Q 011657 400 LRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQR 465 (480)
Q Consensus 400 ~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (480)
.+.|....|+.+.....+..++|.+.+.+....|+..++.+..+..++..+......||+..++.+
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 999999999999999999999999999999999999999999999999999888888887655443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.9e-08 Score=89.17 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=90.2
Q ss_pred hHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHH--HHHHHHHHhhccCCc
Q 011657 291 PSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI--SLFLLGSYYLFLDDV 367 (480)
Q Consensus 291 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 367 (480)
.....+.+.++++ .|. +..+.|.+.+...+..++..++.|.++||+|.|+-++....+..+ +.+....+......+
T Consensus 24 gi~~pF~~iWL~~~~GL-s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n 102 (412)
T PF01306_consen 24 GIFLPFFPIWLTQVAGL-SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN 102 (412)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHccccCC-CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666765 788 999999999999999999999999999999977665543332222 111111100000112
Q ss_pred hhHHHHHHHHHHHHHhcccc---cccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHH
Q 011657 368 PAVAVVALLLYVGCYQLSFG---PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 444 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 444 (480)
.+...+ +.....+..+. |+.-+++.+ .. +..+.-.|=..+.+.+|.+++..+.|.+.+ .+....|++..+.
T Consensus 103 ~~lg~i---ig~i~l~~~f~~~~~~~Ea~~er-~s-r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~ 176 (412)
T PF01306_consen 103 FWLGAI---IGGIYLGLVFNAGVPLSEAYAER-VS-RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAA 176 (412)
T ss_dssp -HHHHH---HTTTTTTTTTTTHHHHHHHHHHH-HH-HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHcccchHHHHHHHH-HH-HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHH
Confidence 111111 11111122222 233222222 22 345566788888999999999999999987 4556778876655
Q ss_pred HHHHHHhcCCCCCC
Q 011657 445 AVLSLAFIFXXXXX 458 (480)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (480)
.++..++.+...++
T Consensus 177 ~~il~lll~~~~~~ 190 (412)
T PF01306_consen 177 AIILLLLLLLLKPD 190 (412)
T ss_dssp HHHHHHHHHSS---
T ss_pred HHHHHHHHHHcCCc
Confidence 55555554444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=77.27 Aligned_cols=295 Identities=16% Similarity=0.230 Sum_probs=150.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhHhHHhh
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGI 168 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~g~~~ 168 (480)
++....++|.+....+-..++...+.|.++||-|||+.-+.-++.+.++++ +-.++.|-.++++|.+-|++.+.+=...
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence 788888999988888888899999999999999999976655555554433 4468899999999999999998844444
Q ss_pred hhhhh-hhh------hhh------HHHHhchhHHHHHHHHHHhc-------ccCchHHHHHhcccccCchhhhHHHHHHH
Q 011657 169 GSLLV-DLV------AGW------RYMYGASTPLAVIMGMGMWW-------LPASPRWLLLCAMKRKGDMQDLRESAISC 228 (480)
Q Consensus 169 g~~l~-~~~------~~w------r~~f~~~~~~~~~~~~~~~~-------~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 228 (480)
-.++. +.. ..| |..|+-.++++++..+.-=. -|-.|-- .... ...-+...
T Consensus 146 EsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFd-AAac---------fLaigmAv 215 (454)
T KOG4332|consen 146 ESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFD-AAAC---------FLAIGMAV 215 (454)
T ss_pred HHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchH-HHHH---------HHHHHHHH
Confidence 44433 221 134 44555555555543222111 1222210 0000 00000000
Q ss_pred HHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCC
Q 011657 229 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSA 308 (480)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 308 (480)
+...-+.+.++ +.+.++... +-+...+.+..++ ++.+...+........+..+..|.|.+-.+. .
T Consensus 216 il~~W~ENygd--ps~~kdllt-------qf~gaa~aiaSD~---ki~LLG~iqsLFE~smytFVFLWTPaLspn~---e 280 (454)
T KOG4332|consen 216 ILSSWSENYGD--PSENKDLLT-------QFKGAARAIASDE---KIALLGAIQSLFEGSMYTFVFLWTPALSPND---E 280 (454)
T ss_pred HHhhhhhccCC--hhhhHHHHH-------HhhHhHHHHhcch---HHHHHHHHHHHHhhhhheeeeeecccCCCCc---c
Confidence 00000111111 000000000 0011112222221 2222222333322222223333444432111 1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc--hHHHhhhHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHhc
Q 011657 309 ASDATRVSILLGLFKLIMTGLAVLVVERLGRR--PLLLGGVSGIVISLFLLGSYYLF--LDDVPAVAVVALLLYVGCYQL 384 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 384 (480)
..--|.+...+.+..++|+-+..++..|-..| ..+.+.+.+....+.+..+.... ....+...++.++.+-.+.+.
T Consensus 281 ~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGl 360 (454)
T KOG4332|consen 281 EIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGL 360 (454)
T ss_pred cCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhh
Confidence 22356777777888888887776666554333 33444444444443333222211 122334456666666666666
Q ss_pred ccccccceeecccCChhhhhhHHHHH
Q 011657 385 SFGPIGWLMISEVFPLRLRGRGLSVA 410 (480)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~~~~~~~~ 410 (480)
.+ |..+-+-.+..|.+.|++.+-+.
T Consensus 361 fw-PSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 361 FW-PSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred cc-hHHHHHHHhhCCHHHHhhhhhhe
Confidence 55 55557778889999998554443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-07 Score=88.27 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=99.0
Q ss_pred HHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----hcCc-hHHHhhhHHHHHHHHHHHHHhhccC
Q 011657 292 SVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVER----LGRR-PLLLGGVSGIVISLFLLGSYYLFLD 365 (480)
Q Consensus 292 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (480)
.+..|++.|+.+ .|. ++..++.+..+..+...+..++.|+++|| +||| +.++.+.+..++++.++.. .+.
T Consensus 24 ~~~~~l~~yyt~v~Gl-s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~---~p~ 99 (473)
T PRK10429 24 IVYMYLMYYYTDVVGL-SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS---AHL 99 (473)
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc---CCC
Confidence 444455555544 588 89999999999999999999999999994 5884 5555666666666544421 111
Q ss_pred Cc-h--h-HHHHHHHHHHHHHhcccccccceeecccC-ChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-------C
Q 011657 366 DV-P--A-VAVVALLLYVGCYQLSFGPIGWLMISEVF-PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-------G 433 (480)
Q Consensus 366 ~~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------g 433 (480)
.. . . +..+..+++..++.....|.. ++..|+. ++++|....+.-....++|+.+.+.+...+.+.. +
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g 178 (473)
T PRK10429 100 FEGTAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFG 178 (473)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 11 1 1 222222333334443333333 7778887 5788999888877777777666665544443322 3
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 434 AGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
+.....+.+++.+++.++.++..+|+
T Consensus 179 ~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 179 FQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceec
Confidence 34444555555555555555545554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=65.55 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=73.6
Q ss_pred cccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 011657 65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144 (480)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 144 (480)
|..+..++|.+|.+++| .++|..+.+++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.
T Consensus 5 GigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHH
Q 011657 145 PDFIIMV 151 (480)
Q Consensus 145 ~~~~~l~ 151 (480)
++++.+.
T Consensus 78 ~~~~~w~ 84 (85)
T PF06779_consen 78 HSFWLWS 84 (85)
T ss_pred hchHHHh
Confidence 9887653
|
Note that many members are hypothetical proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=89.01 Aligned_cols=164 Identities=18% Similarity=0.124 Sum_probs=101.3
Q ss_pred HHhH-HHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----hcCch-HHHhhhHHHHHHHHHHHHHhhccCCc
Q 011657 294 LYYA-ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER----LGRRP-LLLGGVSGIVISLFLLGSYYLFLDDV 367 (480)
Q Consensus 294 ~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (480)
..|+ .++.+..|. ++..++.+..+..+...+..++.|+++|| +|||+ .++.+.+..+++.+++..........
T Consensus 29 ~~~l~~~~t~~~gl-s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 29 MLFLAYFYTDVFGL-SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 3344 444456788 89999999999999999999999999998 66644 45556566655554432210000011
Q ss_pred -hhHHHHHHHHHHHHHhcccccccceeecccC-ChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-------CccHHH
Q 011657 368 -PAVAVVALLLYVGCYQLSFGPIGWLMISEVF-PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-------GAGILF 438 (480)
Q Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------g~~~~~ 438 (480)
..+..+...++..++.....|.. ++..|.. ++++|.+..+.......+|+.+++.+...+.... ||...+
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~ 186 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM 186 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 12223333333444443333443 7778876 5577998888888888888888776655554433 445566
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q 011657 439 YAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~ 459 (480)
.+.++++++..++.++..+|+
T Consensus 187 ~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 187 MVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHhCCeEEe
Confidence 666666666655555544443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-06 Score=74.92 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH
Q 011657 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL 163 (480)
Q Consensus 94 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 163 (480)
--.+.+.-+-.+...+..+.+.++.+|+..+.=..+..+++.++.++.++++|.+.-+++-.+.+++.|.
T Consensus 59 ~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~ 128 (402)
T PF02487_consen 59 VSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGL 128 (402)
T ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhh
Confidence 3344555555667777777888889998766556677778889999999999999888888999888887
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=81.82 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=83.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHhccc
Q 011657 308 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDD-VPAVAVVALLLYVGCYQLSF 386 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 386 (480)
++...+.+.....++.+.|+++.|++.||+|||+++...++++.++.++.++....... .....+.+.-.+.+...++=
T Consensus 82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 82 PSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence 56677888999999999999999999999999999998888888887755432222122 12233333334444444455
Q ss_pred ccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 387 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
.|+..+..+|....+.||.-.+.+.+.+..|...|.
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ 197 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGG 197 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEEecchhHhhcc
Confidence 788889999999999999988887777666544443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-07 Score=85.93 Aligned_cols=160 Identities=16% Similarity=0.035 Sum_probs=99.4
Q ss_pred HHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhc-----CchHHHhhhHHHH-HHHHHHHHHhhcc
Q 011657 292 SVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG-----RRPLLLGGVSGIV-ISLFLLGSYYLFL 364 (480)
Q Consensus 292 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~-~~~~~~~~~~~~~ 364 (480)
......+.++ ++.|. +..+.+...+...+...+-.+ .|.++||++ ||+.+.++.++.. ++...+. .
T Consensus 43 l~~~~~~~~l~~~lg~-s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~----~- 115 (468)
T TIGR00788 43 LMRLPLSPMLTDDLGL-DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP----G- 115 (468)
T ss_pred HhhhhhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc----c-
Confidence 3333444444 45788 888888888888888777555 999999996 5666666654442 2222111 1
Q ss_pred CCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhH---HHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHH
Q 011657 365 DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRG---LSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAF 441 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~ 441 (480)
..+.........+.........-.....+..|..+ +.++.. .++......+|..+++.+.|.+.+..+|+..|++.
T Consensus 116 ~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~ 194 (468)
T TIGR00788 116 KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLIT 194 (468)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 12222222222233333333334456688888887 545443 33444445689999999999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 011657 442 GVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~ 460 (480)
+.+.++..+..+ +.+|++
T Consensus 195 a~l~ll~~~~~~-~~~E~~ 212 (468)
T TIGR00788 195 AALLLLQLFVSN-LSKERR 212 (468)
T ss_pred HHHHHHHHHHHH-hccccc
Confidence 888777744433 355543
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-06 Score=73.78 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=103.5
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHH
Q 011657 296 YAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVAL 375 (480)
Q Consensus 296 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (480)
|.-.++++.|+ +..+.+.++........+...+.|.+.||+|||+..+..+++..++++.-. .++...+.+.
T Consensus 56 Y~Y~LY~~yg~-~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-------~~~~~~L~~G 127 (354)
T PF05631_consen 56 YLYALYESYGF-SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-------SSNYPVLLLG 127 (354)
T ss_pred hhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-------ccccHHHHHH
Confidence 33344577888 888999999999999999999999999999999999888888888887542 2333333333
Q ss_pred HHHHHH-Hhcccccccceeecc----cCChhhhhhHHHHHHHH-HHHHHHhHhhcchhhHHhhCc--cHHHHHHHHHHHH
Q 011657 376 LLYVGC-YQLSFGPIGWLMISE----VFPLRLRGRGLSVAVLV-NFGANALVTFAFSPLKDLLGA--GILFYAFGVIAVL 447 (480)
Q Consensus 376 ~~~~~~-~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~~-~~~g~~i~~~~~~~~~~~~g~--~~~~~~~~~~~~~ 447 (480)
-++++. .+..+...-.=++.| -+|++..+...+..... +.+..++...+...+.+..|. ..+|.....+.++
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 333332 222221111012222 35666666666655533 444555666666667776654 6688888888888
Q ss_pred HHHhcCCCCCCCCCC
Q 011657 448 SLAFIFXXXXXXXXS 462 (480)
Q Consensus 448 ~~~~~~~~~~~~~~~ 462 (480)
+.+++....+|..+.
T Consensus 208 ~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 208 AAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHhcccccCCC
Confidence 877776666666543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-06 Score=74.30 Aligned_cols=154 Identities=18% Similarity=0.083 Sum_probs=119.7
Q ss_pred hHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 291 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
..+.-.++.+-++.|. +...+++++++..++..+..++..++.+|+|.++.+..++++.+++..+=.. .....
T Consensus 29 tsvgPLL~~Ir~~~gl-s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~------~~~~~ 101 (395)
T COG2807 29 TSVGPLLDEIRQDLGL-SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL------GGLPL 101 (395)
T ss_pred hhhhhhHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc------ccHHH
Confidence 3445566777788899 8999999999999999999999999999999999999988888887775432 22222
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-CccHHHHHHHHHHHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-GAGILFYAFGVIAVLSL 449 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~ 449 (480)
.+....+.+.+... .+.+....+.+.+| ++.+..+|++.+..++++++++.+..++.++. ||+....+.+..++++.
T Consensus 102 L~~gt~l~G~gIav-~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl 179 (395)
T COG2807 102 LFLGTLLAGAGIAV-INVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL 179 (395)
T ss_pred HHHHHHHHHhhHHH-HHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH
Confidence 33333333333222 23455578889999 66899999999999999999999999999887 69999888888888877
Q ss_pred HhcC
Q 011657 450 AFIF 453 (480)
Q Consensus 450 ~~~~ 453 (480)
++-+
T Consensus 180 ~~Wl 183 (395)
T COG2807 180 LIWL 183 (395)
T ss_pred HHHh
Confidence 6643
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=86.58 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=110.0
Q ss_pred HhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh----hhcCchH-HHhhhHHHHHHHHHHHHHhh--ccCCc
Q 011657 295 YYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE----RLGRRPL-LLGGVSGIVISLFLLGSYYL--FLDDV 367 (480)
Q Consensus 295 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~ 367 (480)
+..+++.+..|. ++...+.......+...+..++.|.++| |+|||+. ++.+.+..+++++++..... .....
T Consensus 23 ~~~~f~~~~~gl-~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 23 YLLYFYTDVLGL-SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 344555566688 8899999999999999999999999999 7887665 45677777776666542100 00011
Q ss_pred h-hHHHHHHHHHHHHHhcccccccceeecccCC-hhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-------CccHHH
Q 011657 368 P-AVAVVALLLYVGCYQLSFGPIGWLMISEVFP-LRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-------GAGILF 438 (480)
Q Consensus 368 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------g~~~~~ 438 (480)
. .+..+..+++..++.....|.. ++..|..+ +++|....+.-..+..+|..+...+.+.+.+.. +|....
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 1 1223334444445554444444 78899887 468999999999888888877777777766543 355666
Q ss_pred HHHHHHHHHHHHhcCCCCCC
Q 011657 439 YAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~ 458 (480)
++.+++.+++.++..+..+|
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHhhhhhheeee
Confidence 67777777777777776676
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.1e-07 Score=84.67 Aligned_cols=155 Identities=12% Similarity=-0.008 Sum_probs=106.0
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcC-chHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Q 011657 304 AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR-RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCY 382 (480)
Q Consensus 304 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (480)
.+- +.+..|+......++..++.++.|+...|.+. |+.++.+.+++.++.++.......++...++.++.-++. +..
T Consensus 66 ~~A-~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~-Gvg 143 (488)
T KOG2325|consen 66 PTA-TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILT-GVG 143 (488)
T ss_pred CCC-CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHc-CcC
Confidence 455 67788999999999999999999999999886 888899999999999988544443333333333332222 222
Q ss_pred hcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh-------------hCccHHHHHHHHHHHHHH
Q 011657 383 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-------------LGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 383 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-------------~g~~~~~~~~~~~~~~~~ 449 (480)
.. .....=.|+++..-.+.|.++++..+....+|.++||.+...+... .-|..+-|+++++.++..
T Consensus 144 ~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 144 VG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred cc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 22 2233347788866667788888888887777777777654332210 114457788888888888
Q ss_pred HhcCCCCCCCCC
Q 011657 450 AFIFXXXXXXXX 461 (480)
Q Consensus 450 ~~~~~~~~~~~~ 461 (480)
++.+.+.+|..+
T Consensus 223 v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 223 VIILFFFKEVYR 234 (488)
T ss_pred HHHHhheeeccc
Confidence 887777776543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-09 Score=102.43 Aligned_cols=145 Identities=15% Similarity=0.046 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhccccccc
Q 011657 311 DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIG 390 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (480)
..++..+...++..+|.++.|+++||+|||+.+..+..+..++.++..+.. ...+...+...-++.+...++..+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP---SYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 357788999999999999999999999999999999998888887765420 00134444444444444444445666
Q ss_pred ceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh---hCccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 391 WLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL---LGAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 391 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
..++.|..|++.|+...++.+....+|..++..+.-.+.+. .+|+..+.+.++..++..+.. .+.||.
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pES 194 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 79999999999999999999988888877776655433332 347777776666665544443 445654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-06 Score=79.75 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=91.0
Q ss_pred hhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhc-CchHHHhhhHHHHHHHHHHHHHhhccCCch
Q 011657 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG-RRPLLLGGVSGIVISLFLLGSYYLFLDDVP 368 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (480)
+..+..|.+.++++.|+ +..+.|.+.+...+..+++.++.|.++||.+ +|+.+.+..++.++.+..... .++.
T Consensus 18 ~G~~~p~~~~~L~~~G~-s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~-----~~~f 91 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGF-SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF-----SSSF 91 (400)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH-----hccH
Confidence 34566678889999998 9999999999999999999999999999986 456665555554444433322 2233
Q ss_pred hHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc-hhhHHhhC---ccHHHHHHHHH
Q 011657 369 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF-SPLKDLLG---AGILFYAFGVI 444 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~~g---~~~~~~~~~~~ 444 (480)
+..+....++ ..+.....|+..++..+... .++.-.|-....+.+|-+++.... +.+.+..+ ....+++.+.+
T Consensus 92 ~~~~~~~~l~-~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 168 (400)
T PF03825_consen 92 WWLFVIMLLF-SFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL 168 (400)
T ss_pred HHHHHHHHHH-HHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 3333333333 33333344565566655554 244455666666666666664432 22232222 22345555554
Q ss_pred HHHHHH
Q 011657 445 AVLSLA 450 (480)
Q Consensus 445 ~~~~~~ 450 (480)
.++...
T Consensus 169 ~~ll~~ 174 (400)
T PF03825_consen 169 SLLLAG 174 (400)
T ss_pred HHHHHH
Confidence 444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.4e-06 Score=74.06 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=60.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 163 (480)
+|.++.+.++..+.+..+..+|.++.+++.||+|+|+++.++.++..++.++....++...+ .+-++.|++.+.
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~ 246 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSI 246 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999998888888887766665554332 344466776665
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00028 Score=70.57 Aligned_cols=110 Identities=15% Similarity=0.307 Sum_probs=81.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPD--------FIIMVVGRFVFGI 159 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~ 159 (480)
+|.+......+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++.. ...++++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 68888999999999999999999999999996 59999999999999999988877521 1234555666666
Q ss_pred HHhH---------------------------------hHHhhhhhhhhhh----------hhhHHHHhchhHHHHHHHHH
Q 011657 160 GIGL---------------------------------GGYGIGSLLVDLV----------AGWRYMYGASTPLAVIMGMG 196 (480)
Q Consensus 160 g~g~---------------------------------~g~~~g~~l~~~~----------~~wr~~f~~~~~~~~~~~~~ 196 (480)
|.|+ +|..++..+.... .+|...|.+.++..++.++.
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 6666 4444444443211 25888888888887775544
Q ss_pred Hh
Q 011657 197 MW 198 (480)
Q Consensus 197 ~~ 198 (480)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 43
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.1e-06 Score=79.02 Aligned_cols=166 Identities=19% Similarity=0.115 Sum_probs=102.8
Q ss_pred HHHHhHHHH-HHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----hcCchH-HHhhhHHHHHHHHHHHHHhhccC
Q 011657 292 SVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER----LGRRPL-LLGGVSGIVISLFLLGSYYLFLD 365 (480)
Q Consensus 292 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 365 (480)
....|+.++ .+..|. ++..++.+..+.-+.-.+.-++.|+++|| +|||+. ++++.+..+++++++........
T Consensus 27 ~~~~~l~~fyt~~~Gl-~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~ 105 (460)
T PRK11462 27 NVMLYMMFFYTDIFGI-PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSM 105 (460)
T ss_pred HHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCc
Confidence 333444444 455677 89999999999999999999999999997 577654 45565666666554422110001
Q ss_pred Cc-hhHHHHHHHHHHHHHhcccccccceeecccCC-hhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-------ccH
Q 011657 366 DV-PAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-LRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-------AGI 436 (480)
Q Consensus 366 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-------~~~ 436 (480)
.. ..+..+..+++..++.....|.. ++..|+.+ +++|.+..+.-.....+|+.+++.+...+....| |..
T Consensus 106 ~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~ 184 (460)
T PRK11462 106 NGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG 184 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 11 12223333334444444434443 67777765 6889999999999999988888777666655443 344
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC
Q 011657 437 LFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
...+++++.+++..+.+...+|+
T Consensus 185 ~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 185 GIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcceec
Confidence 44555555555555555444543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.6e-06 Score=78.33 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=99.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHh--------cCchHHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR--RELILAALLYLVGALVTAL--------APDFIIMVVGRFVFG 158 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G 158 (480)
+|.+..+...+.-+..+..++|++++|++.||+|.| +++.++++++.+..+...+ .++-+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999 8999999888777766666 678889999999999
Q ss_pred HHHhH----------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCc
Q 011657 159 IGIGL----------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 203 (480)
Q Consensus 159 ~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 203 (480)
+..|. +||.+-+.+.+...+-|+.+....++.++.+++.+.++..
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 99988 8888888888877668999888888887766666666544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-05 Score=77.03 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=106.0
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hcCchHHHhhhHHHHHHHHHHHHHhhccCC-c-hhHHH
Q 011657 296 YAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLDD-V-PAVAV 372 (480)
Q Consensus 296 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 372 (480)
+..++.+..+. +...+...........-+..+++|+++|+ +|+++.+..+.++..++..++.+....... . .....
T Consensus 10 LvlYl~~~lg~-~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 10 LVLYFLNFLGF-SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 33344455677 66777777777777777888899999996 699999999888888888776542111000 0 11112
Q ss_pred HHHHHHHHHHhcccccccceeecccCChh---hhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-------CccHHHHHHH
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVFPLR---LRGRGLSVAVLVNFGANALVTFAFSPLKDLL-------GAGILFYAFG 442 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------g~~~~~~~~~ 442 (480)
...+.+..++..+.-|...+...|.++++ .+.....+.+...++|+.+++.+.+++.+.. +|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 22233333334444566668888888643 4677888888899999999999999887543 4777888877
Q ss_pred HHHHHHHHhcCC
Q 011657 443 VIAVLSLAFIFX 454 (480)
Q Consensus 443 ~~~~~~~~~~~~ 454 (480)
++.+++.++...
T Consensus 169 i~m~ia~lvf~~ 180 (654)
T TIGR00926 169 ILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHH
Confidence 777777666443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=71.28 Aligned_cols=177 Identities=11% Similarity=0.010 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHH
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 352 (480)
+.........+..............|..-...|. +..+..++......+..+++...|.+.|++|||+..........+
T Consensus 77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~-s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v 155 (528)
T KOG0253|consen 77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP-SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGV 155 (528)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch-hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHH
Confidence 3333333333333333322333444444444555 788899999999999999999999999999999987766555444
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 353 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
.-.+-+ .+.+...+..+-...++..++ .|...++-.|..|..+|+.-+-+. +...+|.++...+.-..+.+.
T Consensus 156 ~~~is~------~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 156 FGVISG------ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred HHHhhc------CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 333322 222322222222222222222 566667888999999998877666 778888888888887788889
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 433 GAGILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 433 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
||++.+........+.+.+.++ .+|.
T Consensus 228 gwr~~l~~~~~pl~~~a~f~~w-~~ES 253 (528)
T KOG0253|consen 228 GWRYLLFTSSTPLMFAARFLVW-VYES 253 (528)
T ss_pred hHHHHHHHHHhHHHHHHHHHhh-cccC
Confidence 9998877777665555555444 4443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.8e-05 Score=74.47 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=42.2
Q ss_pred hHHHHHH-hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh----cCchHH-HhhhHHHHHH
Q 011657 296 YAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL----GRRPLL-LGGVSGIVIS 353 (480)
Q Consensus 296 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~-~~~~~~~~~~ 353 (480)
|.+.|++ ..|. ++.+++....+..+...+..++.|+++||. |||+.. ..+.+...+.
T Consensus 30 ~l~~y~~~~~gl-~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 30 FLLSYYTDVAGV-GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 3333444 4588 899999999999999999999999999996 666544 4444444333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00028 Score=67.19 Aligned_cols=112 Identities=13% Similarity=-0.015 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhcCc-hHHHhhhHHHHHHHHHHHHHhhcc-------CCchhHHHHHHHHHHHHH
Q 011657 311 DATRVSILLGLFKLIMTGLAVLVVERLGRR-PLLLGGVSGIVISLFLLGSYYLFL-------DDVPAVAVVALLLYVGCY 382 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 382 (480)
..-.......++-.+|+.+..+.. ..++| +.+.+..+.=.+...++.+....+ -.+.+..++. .+..+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~-~~l~glt 385 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIIL-MLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHH-HHHHHHh
Confidence 345666777888888887654431 11222 123222222222222222211110 1233333333 3333333
Q ss_pred hcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhc
Q 011657 383 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 424 (480)
Q Consensus 383 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~ 424 (480)
.+......+.+..+..++++|..+..+...+-.+|-.+|..+
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666788888888999888888888877777766654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=71.35 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=96.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----- 163 (480)
+|++..+...+.....+..++|++++|+|.||+|.|+++.++++++.+.++..-+...-..+.++-.+.|...|+
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S 362 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS 362 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence 899999999999999999999999999999999999999999999999999888877777777777788887777
Q ss_pred -----------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCc
Q 011657 164 -----------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 203 (480)
Q Consensus 164 -----------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 203 (480)
+||.+-+.+.+...+-|.-+....++.++..+..+.+|+.
T Consensus 363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 7777777777777677877777766666666666666654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.1e-05 Score=71.32 Aligned_cols=167 Identities=25% Similarity=0.263 Sum_probs=109.1
Q ss_pred HHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----hcCc-hHHHhhhHHHHHHHHHHHHHhhcc-
Q 011657 292 SVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVER----LGRR-PLLLGGVSGIVISLFLLGSYYLFL- 364 (480)
Q Consensus 292 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~- 364 (480)
....|+.+++.+ .|. ++..+|.+..+.-+.-.+.-++.|.++|| +||+ +.++++.+..++...++.......
T Consensus 30 ~~~~yLl~fYTdv~Gi-s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~ 108 (467)
T COG2211 30 IVVLYLLFFYTDVFGL-SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM 108 (467)
T ss_pred HHHHHHHHHHhcccCC-cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCccc
Confidence 444555555555 566 99999999999999999999999999997 4654 445566565555555443211000
Q ss_pred CCchhHHHHHHHHHHHHHhcccccccceeecccC-ChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh-------CccH
Q 011657 365 DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF-PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-------GAGI 436 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------g~~~ 436 (480)
........+...++..++.....|-. ++..|+. .+++|.+..+.-..+..+|+.+...+.+++.... |++.
T Consensus 109 ~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~ 187 (467)
T COG2211 109 TGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQG 187 (467)
T ss_pred CcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHH
Confidence 12233444455556666666555555 6777765 4478999999999999999888888887777654 3444
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 437 LFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
...+++++..+..+++++-.+|+.
T Consensus 188 ~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 188 TALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 555555555556666555555543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=55.72 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=49.6
Q ss_pred ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011657 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (480)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (480)
.+..-|-++...++ .|+++.|+|.+.++..+...++++++|.++||+|+++.......++
T Consensus 16 ~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34455556665555 7999999999999999999999999999999999988877665543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.7e-05 Score=68.56 Aligned_cols=123 Identities=15% Similarity=0.024 Sum_probs=82.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC-Cchh--HHHHHHHHHHHHHhc
Q 011657 308 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-DVPA--VAVVALLLYVGCYQL 384 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~ 384 (480)
+...+-+...++.+..++..+.+-|+.||+|-|..++.+....+++..+=.......- +..+ .....-.+... ...
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~ 155 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQP 155 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhh
Confidence 5667888889999999999999999999999999999999888888776443211100 1222 11111111111 111
Q ss_pred ccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 385 SFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
....+..-...-.+|+++|+++..+..+.+.+|.+++..+-+.+..+
T Consensus 156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 11122223444568999999999999999999988888777766654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.1e-05 Score=52.82 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=53.2
Q ss_pred HHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhH
Q 011657 285 QQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVS 348 (480)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 348 (480)
..++....+.-|.+.++++.|. ++.+.+.+..+..+..+++.++.|+++||.++++.......
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 3344455667788889999999 99999999999999999999999999999999887765443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.4e-05 Score=69.18 Aligned_cols=132 Identities=15% Similarity=0.035 Sum_probs=81.9
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhc-----CchHHHh-hhHHHHHHHHHHHHHhhccCC-------ch
Q 011657 302 QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG-----RRPLLLG-GVSGIVISLFLLGSYYLFLDD-------VP 368 (480)
Q Consensus 302 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~ 368 (480)
.+.+. +..-.+.+.....+. .+.++..|+.+|+.+ ||..+++ +...+..+..+.......... +.
T Consensus 8 vEL~v-pA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 8 VELGV-PAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHhcc-HHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 44455 444444444444433 346889999999988 7765554 555555554444432222222 33
Q ss_pred hHHHHHHH----HHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccH
Q 011657 369 AVAVVALL----LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGI 436 (480)
Q Consensus 369 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~ 436 (480)
+....... +++.+.... .+...+++.|..|+++|+.+.++.....-+|.+++..+.+.+.+.+....
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s-~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r 156 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHAS-GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER 156 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHh-HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 33322222 222222222 23444899999999999999999999999999999999999988766443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0015 Score=58.81 Aligned_cols=44 Identities=11% Similarity=-0.030 Sum_probs=36.5
Q ss_pred ccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 389 IGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
..++..+++.++...|+.+.+.|+..++|+---..+..++.|..
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 33478889999999999999999999999877777777777643
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.3e-05 Score=69.61 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=47.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHH-HHHHHHHHHHHHHHhcCch
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRELI-LAALLYLVGALVTALAPDF 147 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~-~~~~~~~~~~~~~~~~~~~ 147 (480)
+|++....+.+--+..+...+.+++.|..+| ||||||.++ .+.++..++.++..++.++
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDi 125 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADI 125 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhh
Confidence 6777777788888888888999999999999 589887766 4666777777777777655
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.035 Score=53.26 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 011657 92 SSVEIGLITSGSLYGALIG-SILAFNIADILGRRRELILAALLYLVGALVTALA 144 (480)
Q Consensus 92 ~~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 144 (480)
+...+.++.+...+...+. .++.+++++|++|++++-+....+....++.++.
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV 94 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence 4468899999988887777 8999999999999999988777777766666554
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0013 Score=57.03 Aligned_cols=85 Identities=22% Similarity=0.195 Sum_probs=70.0
Q ss_pred cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc------
Q 011657 71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA------ 144 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------ 144 (480)
++.-.|++++. +|.|..|...+.+.-.+|..+ +++.|.+.|++|++.++.+|.+...+|..+..++
T Consensus 21 Fs~yS~~Lk~~-------l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~ 92 (250)
T PF06813_consen 21 FSAYSPQLKSR-------LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP 92 (250)
T ss_pred hhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 44445666666 999999999999999999987 5889999999999999999999999998877653
Q ss_pred -CchHHHHHHHHHHHHHHhH
Q 011657 145 -PDFIIMVVGRFVFGIGIGL 163 (480)
Q Consensus 145 -~~~~~l~~~r~l~G~g~g~ 163 (480)
.++|.+.+..++.|.+.+.
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~ 112 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCW 112 (250)
T ss_pred ccchHHHHHHHHHHcccHHH
Confidence 4677887777887777654
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=58.23 Aligned_cols=335 Identities=19% Similarity=0.165 Sum_probs=180.9
Q ss_pred ccCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----
Q 011657 89 YDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL---- 163 (480)
Q Consensus 89 ~~~~~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~---- 163 (480)
.|++..|.. =+.=...-.+.+.-.+.=.+.|-.-.|+++++-.+......++.-+.++.+.+-+.-++.|...+.
T Consensus 36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAY 115 (433)
T KOG3810|consen 36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAY 115 (433)
T ss_pred CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhh
Confidence 566666543 333444556677777788899999999999988777778888888999999999999999998887
Q ss_pred -------------------------hHHhhhhhh----hhh-hhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhccc
Q 011657 164 -------------------------GGYGIGSLL----VDL-VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK 213 (480)
Q Consensus 164 -------------------------~g~~~g~~l----~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 213 (480)
.|...|+.+ ... ..++...-++...-..+..+..+++|..+|-+.-+..+
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~ 195 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLE 195 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccc
Confidence 344444433 322 11334444444444444555666777665433322211
Q ss_pred ccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHH
Q 011657 214 RKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSV 293 (480)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
++.. ..+.+..+. +.+..+.... .-..-...+.+..++ +.++-..+.+....+++.-+
T Consensus 196 ~~~~-----------v~~~e~~~~----~~~~~~~l~~---~~~~l~~~l~~~y~n----p~ll~WSlWwAl~scg~~QV 253 (433)
T KOG3810|consen 196 DKIS-----------VGDLEEMNP----QASYMSYLRG---AFVLLWRDLQECYSN----PRLLKWSLWWALASCGYYQV 253 (433)
T ss_pred ccce-----------eccchhcCc----cchhhHHHHH---HHHHHHHHHHHHhcC----chhhhhHHHHHHhhchhHHH
Confidence 1000 000000000 0000000000 000000112222222 33334444555555566666
Q ss_pred HHhHHHHHHhcCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchH--HHhhhHHHHHHHHHHHHHhhccCCchhH
Q 011657 294 LYYAASILQSAGF-SAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL--LLGGVSGIVISLFLLGSYYLFLDDVPAV 370 (480)
Q Consensus 294 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
.+|...+-++..- .....-|..=....+.+.++.+..|.+.-++.|..- +..+....+..++.+. .+.+-|+
T Consensus 254 ~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----~t~~Iw~ 328 (433)
T KOG3810|consen 254 TNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----QTQHIWV 328 (433)
T ss_pred HHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----cccceeh
Confidence 6777776666531 011122344455666677777888887666655432 3333333333333222 2456677
Q ss_pred HHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-----------ccHHHH
Q 011657 371 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-----------AGILFY 439 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-----------~~~~~~ 439 (480)
......++...+........ .-+++....+.-|...|+..++.-+-..+-..+. .|..| +...|.
T Consensus 329 ~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~ 404 (433)
T KOG3810|consen 329 CYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFI 404 (433)
T ss_pred hhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHH
Confidence 77777777777766543333 4445555667788888888877666555554443 33222 334677
Q ss_pred HHHHHHHHHHHhcCC
Q 011657 440 AFGVIAVLSLAFIFX 454 (480)
Q Consensus 440 ~~~~~~~~~~~~~~~ 454 (480)
+.+++.+++..+.+.
T Consensus 405 v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 405 VLGVIFLIGFGIEYL 419 (433)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877665443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.011 Score=58.30 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=52.7
Q ss_pred cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHh
Q 011657 71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTAL 143 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~ 143 (480)
..+.+..+..+ ++.+...+.-..+.+.-......+..+.++|-| ||-+++.++.++..+|..+..+
T Consensus 57 ~~nlv~ylt~~-------~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~ 123 (571)
T KOG1237|consen 57 VSNLVTYLTLE-------LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTL 123 (571)
T ss_pred hhHHHHHHHHH-------hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 777778888888999888899999999999976 9999999999988888655444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0015 Score=52.13 Aligned_cols=110 Identities=14% Similarity=-0.043 Sum_probs=78.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccc
Q 011657 310 SDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPI 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
........+......+..++.+.+.+++|.|+.+.++.+...+-...... .+.+..+....+.+.+.+..+...
T Consensus 37 ~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 37 GLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWTAQ 110 (156)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhHhh
Confidence 33445566677777888889999999999999999988887755544321 234444555555555555555444
Q ss_pred cceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcch
Q 011657 390 GWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFS 426 (480)
Q Consensus 390 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~ 426 (480)
. .++.+...++.+++..++...+...+.++|..+.-
T Consensus 111 g-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 111 G-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred h-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 67888888899999999999888888777776543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=62.27 Aligned_cols=121 Identities=8% Similarity=-0.016 Sum_probs=80.0
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCc---------------------
Q 011657 310 SDATRVSILLGLFKLIM-TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV--------------------- 367 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 367 (480)
+...++-+...+...+. .++-+++++|++|+++.-.........+.++++......+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34555555555555544 78889999999999887766555555555555443322111
Q ss_pred ----hhHHHHHHHHHHHHHhccccc-ccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH
Q 011657 368 ----PAVAVVALLLYVGCYQLSFGP-IGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 430 (480)
Q Consensus 368 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 430 (480)
..|....+.+..-.++....+ +.|.+++|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222222333333333333 678999999999999999999999999999999998888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.56 E-value=1.1e-05 Score=78.86 Aligned_cols=176 Identities=14% Similarity=0.052 Sum_probs=1.2
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHH
Q 011657 281 LVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSY 360 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (480)
+..+.+...........+.+-+.+++ ++.++|++.+..-++.++..++..++.+|..|-+.+-++.++++++.+++.+=
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF~l-~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRFGL-SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 33333444444555566777777888 99999999999999999999999999999888888888888888888877532
Q ss_pred hhccC-----------------------------------------Cch---hHHHHHHHHHHHHHhcccccccceeecc
Q 011657 361 YLFLD-----------------------------------------DVP---AVAVVALLLYVGCYQLSFGPIGWLMISE 396 (480)
Q Consensus 361 ~~~~~-----------------------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
..... ... +..+++.-++.+.......++..+|+-|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 11100 000 1112222223333444456777899999
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh---------------------hC-ccHHHHHHHHHHHHHHHhcCC
Q 011657 397 VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL---------------------LG-AGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 397 ~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.++++..+...|+..+...+|-++|=.+.+..... .| |...|++.+.+.++..+..+.
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988888776666555544321 12 333555666666666665555
Q ss_pred CCC
Q 011657 455 XXX 457 (480)
Q Consensus 455 ~~~ 457 (480)
+.+
T Consensus 249 FPk 251 (539)
T PF03137_consen 249 FPK 251 (539)
T ss_dssp ---
T ss_pred CCc
Confidence 443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.037 Score=51.14 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=28.5
Q ss_pred HHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHh
Q 011657 376 LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
....+...+-...+.+.+..+.+|++++-.+-.+...+-..|-..|.
T Consensus 350 ~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 350 MSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred HHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444445567778999999888776665555555555544443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00037 Score=63.63 Aligned_cols=104 Identities=37% Similarity=0.488 Sum_probs=81.6
Q ss_pred ccccccccccccccCCCCCCCccccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 011657 66 YDIGSTSCATISIESPTLSGISWYDLSS--VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143 (480)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 143 (480)
++........+....+ ++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 16 LDLGLLSPALPLLLST-------LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HhcchHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 4445555556665554 44444 58899999999999999999999999999999988888877777788888
Q ss_pred cCc--hHHHHHHHHHHHHHHhHhHHhhhhhhhhhh
Q 011657 144 APD--FIIMVVGRFVFGIGIGLGGYGIGSLLVDLV 176 (480)
Q Consensus 144 ~~~--~~~l~~~r~l~G~g~g~~g~~~g~~l~~~~ 176 (480)
..+ .+.+++.|+++|++.+...+....++.+..
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 123 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 776 899999999999999876666666555544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00068 Score=64.97 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=94.5
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhc-----CchHHHhhhHHHHHHHHHHHHHhhccCCchhHHH
Q 011657 298 ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG-----RRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 372 (480)
Q Consensus 298 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (480)
+.+.++.|. ++.+.........+.. ...++.|.++|-+. ||+-++++.++..++...+..... ...+.....
T Consensus 14 ~~l~~~l~l-s~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~-~~~s~~~~~ 90 (433)
T PF03092_consen 14 PFLKDDLGL-SPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA-SESSAAIAV 90 (433)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-ccchhhhHH
Confidence 444566787 6666555544444333 35577889999862 444455566655555554443211 111222222
Q ss_pred HHHHHHHHHHhcccccccceeecccC---ChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHH
Q 011657 373 VALLLYVGCYQLSFGPIGWLMISEVF---PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (480)
+.+++...+... .-...-++..|.. |.+ ++...+.+..+..+|+.++..+.|.+.+..+++..|.+.+.+..+..
T Consensus 91 ~~l~la~~g~a~-~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 91 VLLFLASFGYAF-ADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHH-HHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 222222222221 1223345555654 544 88888999999999999999999999999999999988887777766
Q ss_pred HhcCCCCCC
Q 011657 450 AFIFXXXXX 458 (480)
Q Consensus 450 ~~~~~~~~~ 458 (480)
+..+.+.+|
T Consensus 169 ~~~~~~~~e 177 (433)
T PF03092_consen 169 IVALFLLEE 177 (433)
T ss_pred HHHHHhhhh
Confidence 665555565
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.001 Score=65.90 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHH
Q 011657 274 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 353 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 353 (480)
.++..+.+..+.+......+......+-+.+++ +..+.|++....-++..+...+..++..|..|-+.+-++.++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i-~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKI-SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC-CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 334444444444444444555556666667788 8888999999999999999999999999999989999999999988
Q ss_pred HHHHHHHhhc-----------------c---------------------------CCc--hhHHHHHHHHHHHHHhcccc
Q 011657 354 LFLLGSYYLF-----------------L---------------------------DDV--PAVAVVALLLYVGCYQLSFG 387 (480)
Q Consensus 354 ~~~~~~~~~~-----------------~---------------------------~~~--~~~~~~~~~~~~~~~~~~~~ 387 (480)
.+++.+--.. . ..+ .+..+++.-++.+.+.....
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 8887542111 0 001 12223333344444555556
Q ss_pred cccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh------------------hC-ccHHHHHHHHHHHHH
Q 011657 388 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL------------------LG-AGILFYAFGVIAVLS 448 (480)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~------------------~g-~~~~~~~~~~~~~~~ 448 (480)
++..+|+-|...+++.....|+.+++..+|-++|=.+.+..... .| |...|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999988887766666655544321 11 334666777777777
Q ss_pred HHhcCCCCCCC
Q 011657 449 LAFIFXXXXXX 459 (480)
Q Consensus 449 ~~~~~~~~~~~ 459 (480)
.+..+++.++.
T Consensus 336 a~p~f~fPk~l 346 (735)
T KOG3626|consen 336 AVPLFFFPKEL 346 (735)
T ss_pred HHHHHhCcccC
Confidence 77766654443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0044 Score=43.23 Aligned_cols=67 Identities=19% Similarity=0.059 Sum_probs=58.8
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHH
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGS 359 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 359 (480)
.+.-.+|.+.++.++ +..+++++.+...++.++|.+...++.++..+++.+..+.+...+..+.+.+
T Consensus 10 ayTplLP~M~~~~~l-s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 10 AYTPLLPLMQADGGL-SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHhHhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888899888 9999999999999999999999999999888888888888888888887765
|
Note that many members are hypothetical proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0027 Score=54.85 Aligned_cols=48 Identities=23% Similarity=0.119 Sum_probs=42.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV 136 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 136 (480)
||+|+...+.+.+....-.++.+++.|.++||+|++-..+.+..+..+
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL 342 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence 999999999999999999999999999999999999887776554443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=52.25 Aligned_cols=149 Identities=20% Similarity=0.135 Sum_probs=92.0
Q ss_pred HHHHhHHHHHHhcCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh
Q 011657 292 SVLYYAASILQSAGFSAA--SDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
......+.+..+.+. +. ...++......+...++.++.|.+.||.|||+.+..+......+.+..... .....
T Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 94 (338)
T COG0477 20 LLSPALPLLLSTLSL-SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA----PNVGL 94 (338)
T ss_pred hHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----ccchH
Confidence 333455555555554 33 367888888899999999999999999999977776665533433333221 11122
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCCh-hhhhhHHHHHHH-HHHHHHHhHhhcchhhHHh--hCccHHHHHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPL-RLRGRGLSVAVL-VNFGANALVTFAFSPLKDL--LGAGILFYAFGVIA 445 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~-~~~~g~~i~~~~~~~~~~~--~g~~~~~~~~~~~~ 445 (480)
..+.......+.......+...++..|..|. +.|+...+.... ...++..+++.+.+.+... .+|+..+.......
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2222222223333334456666888999887 578888888888 5777777777666655544 45655444444433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0017 Score=61.36 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=96.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH-----
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~----- 163 (480)
.+-.+...|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+..+..+|.|+.+..-+++|+..+.
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 565666777777788888888999999999999999999999999999999999999999999999999998887
Q ss_pred ------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcc
Q 011657 164 ------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 200 (480)
Q Consensus 164 ------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 200 (480)
+|.++|+.+.... +=|..|.+.++.+++.++....+
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888876 88999999988888765554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.087 Score=49.93 Aligned_cols=42 Identities=10% Similarity=-0.102 Sum_probs=32.3
Q ss_pred ccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH
Q 011657 389 IGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 430 (480)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 430 (480)
...++-+.+.+|..-|+.+.+.|++.++|+---..+.-+++|
T Consensus 425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 334777888888999999999999999997655555444544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.042 Score=51.25 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=89.5
Q ss_pred HHhHHHHHHh-cCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHH
Q 011657 294 LYYAASILQS-AGFSAASDATR-VSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371 (480)
Q Consensus 294 ~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (480)
.+..|++.+. .++ +..+..- +.-...-..++..++...+.|.++.|++++++.+...+...++.+ ......
T Consensus 24 Pfl~~yL~~~~kn~-T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~------~~sv~~ 96 (412)
T PF01770_consen 24 PFLTPYLTGPDKNF-TEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF------GTSVLA 96 (412)
T ss_pred ccchHHHcCCccCC-CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HCcHHH
Confidence 3444555554 566 5555443 333333444556667788999999999999888877776666543 233333
Q ss_pred HHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC--ccHHHHHHHHHHHHHH
Q 011657 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG--AGILFYAFGVIAVLSL 449 (480)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~ 449 (480)
+-..-++.+.....- ...++++-...|+++--++.+.......+|..++..++-.+....+ +....++..+...++.
T Consensus 97 mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~ 175 (412)
T PF01770_consen 97 MQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL 175 (412)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 333333333333322 2334666667788877888888888888887777777766665333 3334344333333444
Q ss_pred HhcCC
Q 011657 450 AFIFX 454 (480)
Q Consensus 450 ~~~~~ 454 (480)
++.++
T Consensus 176 ~~~~f 180 (412)
T PF01770_consen 176 LIALF 180 (412)
T ss_pred HHHHH
Confidence 44333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.015 Score=54.76 Aligned_cols=115 Identities=10% Similarity=-0.062 Sum_probs=77.7
Q ss_pred hHHHhhhHHHHHHHHHHHHHhhccCC----chhHHHHHHHHHHHHHhcccccccceeecccCChh---hhhhHHHHHHHH
Q 011657 341 PLLLGGVSGIVISLFLLGSYYLFLDD----VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR---LRGRGLSVAVLV 413 (480)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~ 413 (480)
+++.++.++..++.+++.+....... .....++.+.+ ...+.++.=|....+..|.++++ .|.......+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~l-ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLAL-IAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHH-HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHH-HHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 45667778888888775543222111 11233333333 34444455566668888888765 567777888999
Q ss_pred HHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 414 NFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 414 ~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
.++|..++..+.+++.++.||...|.+.++..+++.+..+.-.
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998888887777665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.086 Score=50.04 Aligned_cols=160 Identities=11% Similarity=-0.021 Sum_probs=90.2
Q ss_pred HHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHH----HHHHHHHHHhhccCC-
Q 011657 292 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIV----ISLFLLGSYYLFLDD- 366 (480)
Q Consensus 292 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~- 366 (480)
...+-.+.++.+..-.+-.-.+.....-.+..++..+..|...||..|.+....+.+..- +++.++.........
T Consensus 20 ~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~ 99 (432)
T PF06963_consen 20 MWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS 99 (432)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 334444555554432144456666777778888888889999999999877655543332 222222222222221
Q ss_pred --chhHHHH---HHHHHHHHHhcccccccceeecc------cC--ChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC
Q 011657 367 --VPAVAVV---ALLLYVGCYQLSFGPIGWLMISE------VF--PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG 433 (480)
Q Consensus 367 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~--p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g 433 (480)
+.+.... ...++......+. .......| +. +++.....++...-+=.+...++|.+.|.+.+..+
T Consensus 100 ~~~~~~~~~l~~~~~~~~~i~~Las--~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s 177 (432)
T PF06963_consen 100 SQSSWLFIALFALLILLGAIERLAS--IANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS 177 (432)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH--hhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1222211 1112222111111 11122221 22 34555666666666667789999999999999888
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 011657 434 AGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~ 453 (480)
+.....+.++..+++..+=+
T Consensus 178 ~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 178 PVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777766543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.014 Score=51.17 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH
Q 011657 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL 163 (480)
Q Consensus 96 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 163 (480)
.|.+.-.-.+...+..+.+..+.||+---+-..+..++.+.+.++.++++|.++-+.+-.+..++.|.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGl 131 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGL 131 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCc
Confidence 45555555566667777777888887544434566777888888999999999999998888888887
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.089 Score=50.85 Aligned_cols=109 Identities=12% Similarity=-0.016 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC-----Cc--------------------hhHHHHHHH
Q 011657 322 FKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-----DV--------------------PAVAVVALL 376 (480)
Q Consensus 322 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------------~~~~~~~~~ 376 (480)
+.++...+-.++++++++.++.-.........+.++++..+... +. ..|...++.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 33445566778999999988776655555555555554332211 00 011111112
Q ss_pred HHH-HHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH
Q 011657 377 LYV-GCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 430 (480)
Q Consensus 377 ~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 430 (480)
+.. ...+....-+-|.+++|....++..+-.++.....++|.++++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222222223557899999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.14 Score=44.15 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=17.4
Q ss_pred hhhHHHHhchhHHHHHHHHHHhcc
Q 011657 177 AGWRYMYGASTPLAVIMGMGMWWL 200 (480)
Q Consensus 177 ~~wr~~f~~~~~~~~~~~~~~~~~ 200 (480)
..|++++.+.+++.++.++++..+
T Consensus 38 ~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 38 NNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379999999988887755544443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.24 Score=49.06 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=103.0
Q ss_pred HHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hcCchHHHhhhHHHHHHHHHHHHHhhccC------
Q 011657 293 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLD------ 365 (480)
Q Consensus 293 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 365 (480)
......++....+. +...+.-.............+.+++++|. +||-+++.++..+..++..++.+......
T Consensus 57 ~~nlv~ylt~~~~~-~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 57 VSNLVTYLTLELHA-SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC 135 (571)
T ss_pred hhHHHHHHHHHhcc-chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 34455555566666 44666666677777777788899999996 48888888888887777666544322210
Q ss_pred ----C-------chh--HHHHHHHHHHHHHhcccccccceeecccCCh----hh--hhhHHHHHHHHHHHHHHhHhhcch
Q 011657 366 ----D-------VPA--VAVVALLLYVGCYQLSFGPIGWLMISEVFPL----RL--RGRGLSVAVLVNFGANALVTFAFS 426 (480)
Q Consensus 366 ----~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~--~~~~~~~~~~~~~~g~~i~~~~~~ 426 (480)
. ... ..+...........++.-|...++-.|.++. +. +..-+...+...++|..++..+..
T Consensus 136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 0 011 1111112222223444456666788888872 22 235667777778899999888888
Q ss_pred hhHHhhCccHHHHHHHHHHHHHHHhcC
Q 011657 427 PLKDLLGAGILFYAFGVIAVLSLAFIF 453 (480)
Q Consensus 427 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (480)
++-++.+|...|.+..++.+++.++.+
T Consensus 216 yiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 216 YIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred hhhhcccceeeccHHHHHHHHHHHHHH
Confidence 888889999888887777666655543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.094 Score=51.50 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=69.5
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHH---HHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 011657 304 AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIV---ISLFLLGSYYLFLDDVPAVAVVALLLYVG 380 (480)
Q Consensus 304 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (480)
.|. +....+.+.+.+..+..+|+.+++++.++.-++... .-..+.. ++..++...... ............+..+
T Consensus 45 ~G~-s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~ 121 (521)
T PRK03612 45 LGD-SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAF-QGLSRLLLYVLVLLIG 121 (521)
T ss_pred hCc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 454 566667777777778888888777765332222211 1111111 111111111100 0011111122222222
Q ss_pred HHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH-hhCccHHHHHHHHHHHHHH
Q 011657 381 CYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-LLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 449 (480)
+..+...|+...+..+. ..+..+...|-.+....+|+++|+.+.+.+.- ..|.....++.+.+.++.+
T Consensus 122 ~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 122 LLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333344442332222 11234667888888999999999998887664 5776555555555544444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.42 Score=38.26 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhHhHHhhhhh
Q 011657 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSL 171 (480)
Q Consensus 92 ~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~g~~~g~~ 171 (480)
++..--.-.++......+.+++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-.+.|++.+.+-..-|.+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 3333344556666777888888999999999999999999999865444 456788899999999999999966666666
Q ss_pred hhh
Q 011657 172 LVD 174 (480)
Q Consensus 172 l~~ 174 (480)
+..
T Consensus 114 lt~ 116 (156)
T PF05978_consen 114 LTS 116 (156)
T ss_pred HHH
Confidence 653
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.0024 Score=58.22 Aligned_cols=109 Identities=14% Similarity=-0.090 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cCchHHHhhhHHHHHHHHHHHHHhhcc--------CCchhHHHHHHHHHHHHHhc
Q 011657 314 RVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLFL--------DDVPAVAVVALLLYVGCYQL 384 (480)
Q Consensus 314 ~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 384 (480)
.....+.++-.+|+.+..+..-+. .+|++. ...+.=.+...++......+ -.+.++ .....+..+...+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~-~~i~~~l~g~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAW-FIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHH-HHHHHHHHHHccc
Confidence 356678889999999887653221 233333 22222222222221111110 112222 2333333344444
Q ss_pred ccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhc
Q 011657 385 SFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 424 (480)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~ 424 (480)
-...+.+.+..+..++++|..+..+...+-.+|-.+|..+
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---HHHH---------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888777777766676666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.015 Score=54.00 Aligned_cols=151 Identities=22% Similarity=0.148 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----hcCchHHH-hhh
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER----LGRRPLLL-GGV 347 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~-~~~ 347 (480)
+.++....+.+..++++ ..-..|.+.++++.|. +....+......-+.+++.+++.|..+|| +||||..+ .+.
T Consensus 32 ~~li~v~~ia~Gvqf~w-A~elsy~tPyl~~lGv-phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGW-ALELSYLTPYLQSLGV-PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhccccHHHHHcCC-CcccccccccccccccceecccccccccccccccccccchHHHhh
Confidence 33444444444445443 3555678888999999 88888888888889999999999999996 68776654 455
Q ss_pred HHHHHHHHHHHHHhhc------cCCc--hhHHH----HHHHHHHHHHhcccccccceeecccCChhhhhh-HHHHHHHHH
Q 011657 348 SGIVISLFLLGSYYLF------LDDV--PAVAV----VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGR-GLSVAVLVN 414 (480)
Q Consensus 348 ~~~~~~~~~~~~~~~~------~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~ 414 (480)
....+++++++..... .... ....+ +.+.++-........|.= ++..|+..++.+.+ +++....+.
T Consensus 110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHH
Confidence 5556666655432111 0111 01111 112222223333444554 78888887777777 899998888
Q ss_pred HHHHHhHhhcch
Q 011657 415 FGANALVTFAFS 426 (480)
Q Consensus 415 ~~g~~i~~~~~~ 426 (480)
.+|+.+|=.+.+
T Consensus 189 avGnvLGY~~g~ 200 (498)
T KOG0637|consen 189 AVGNVLGYALGS 200 (498)
T ss_pred Hhcceeeeeccc
Confidence 888876665544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.033 Score=47.91 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=82.9
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh-HHHHHHHH
Q 011657 299 SILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA-VAVVALLL 377 (480)
Q Consensus 299 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 377 (480)
++.+.+|+ ...+.+.+........++...+.|-+.||.|||+..+.-++...++++.= .+..+ ..++.-.+
T Consensus 62 yLYstYgF-gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK-------hSpqYkVLmVGR~L 133 (454)
T KOG4332|consen 62 YLYSTYGF-GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK-------HSPQYKVLMVGRVL 133 (454)
T ss_pred eeehhcCc-cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh-------cCCceEEEeehhhh
Confidence 34566777 67788888877777788888889999999999998776666666555531 11111 11111111
Q ss_pred HHHHHhcccccccceeecccC-----ChhhhhhHHHHHH-HHHHHHHHhHhhcchhhHHhhC--ccHHHHHHHHHHHHHH
Q 011657 378 YVGCYQLSFGPIGWLMISEVF-----PLRLRGRGLSVAV-LVNFGANALVTFAFSPLKDLLG--AGILFYAFGVIAVLSL 449 (480)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~-----p~~~~~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~ 449 (480)
.+......+...-.=++.|.. |.+-.....+=.. ..+.+-.++.......+.|..+ .-.+|-..+.+..++.
T Consensus 134 GGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm 213 (454)
T KOG4332|consen 134 GGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM 213 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 111111111111111334433 3333333333222 2234555666666667777654 4456665555555555
Q ss_pred HhcCCCCCCCCCC
Q 011657 450 AFIFXXXXXXXXS 462 (480)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (480)
.+.+.-..|..++
T Consensus 214 Avil~~W~ENygd 226 (454)
T KOG4332|consen 214 AVILSSWSENYGD 226 (454)
T ss_pred HHHHhhhhhccCC
Confidence 5544444454444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.9 Score=40.62 Aligned_cols=75 Identities=20% Similarity=0.384 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc---Cch------HHHHHHHHHHHHHHhH--------------------------------
Q 011657 125 RELILAALLYLVGALVTALA---PDF------IIMVVGRFVFGIGIGL-------------------------------- 163 (480)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~---~~~------~~l~~~r~l~G~g~g~-------------------------------- 163 (480)
|++.++.+++.+|.++..++ .+. ..++++-.+.++|.|+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888884433 222 6788899999999998
Q ss_pred -hHHhhhhhhhh---hhhhhHHHHhchhHHHHHHHHHHhc
Q 011657 164 -GGYGIGSLLVD---LVAGWRYMYGASTPLAVIMGMGMWW 199 (480)
Q Consensus 164 -~g~~~g~~l~~---~~~~wr~~f~~~~~~~~~~~~~~~~ 199 (480)
+|..++..+.. ...+|.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 45544443332 2248999999998887776555544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.2 Score=42.57 Aligned_cols=107 Identities=11% Similarity=-0.059 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccc
Q 011657 312 ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGW 391 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
......+......+..++++.+.|+++.|+.+.++..+.......+.. .+.+..+....+.+.+.+..+..-.
T Consensus 52 Gy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~------~N~y~~yfssallG~Gaallw~GqG- 124 (461)
T KOG3098|consen 52 GYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF------PNSYYLYFSSALLGFGAALLWTGQG- 124 (461)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh------cchHHHHHHHHHhhhhHHheecccc-
Confidence 334478888888999999999999999999999998888776665543 3566666666666666666555444
Q ss_pred eeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc
Q 011657 392 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF 425 (480)
Q Consensus 392 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~ 425 (480)
.+..|...++.+.+..++...+...+.++|..+.
T Consensus 125 ~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 125 GYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 7899999999999999999999888777775443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.1 Score=42.27 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=30.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR 124 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 124 (480)
+|-+..+.+.+.++++.|.++|+.+++++.++--|+
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~ 80 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG 80 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 677889999999999999999999999987544333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.85 E-value=6.4 Score=37.74 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 011657 92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144 (480)
Q Consensus 92 ~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 144 (480)
++..+.++-+...+ +..+..++.+++.+++.|.+++-+-+..+....+++++.
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888 778889999999999999999988888888777777763
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.76 E-value=7.2 Score=38.04 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 011657 92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143 (480)
Q Consensus 92 ~~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 143 (480)
++..+.++-....+ ...+...+..+++++++|.+++-+....+.....+.++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~ 108 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAF 108 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777776555 44556788999999999999988777777666666655
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2 Score=41.02 Aligned_cols=123 Identities=14% Similarity=-0.025 Sum_probs=78.3
Q ss_pred CcchHHHHHHHHH-HHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC-----C----------ch----
Q 011657 309 ASDATRVSILLGL-FKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-----D----------VP---- 368 (480)
Q Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~---- 368 (480)
++....+=+..-+ ++++..++-.++.+++.+.++.-.........++++++..+... + .+
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 4444444444444 56667777788888888888776666666666666655444210 0 11
Q ss_pred --------hHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHh
Q 011657 369 --------AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 431 (480)
Q Consensus 369 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 431 (480)
|.........-........-+-|..++|....++..+-.++.+...+++..+++.+..++..+
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222222222223335568889999999999999999999999999999888877763
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.82 Score=42.85 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccce
Q 011657 313 TRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWL 392 (480)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (480)
+.+...-.+-.++..+++.++.+|+..+.-......+..+++++.++ ..+.+.-++...+.....+ ++-+.+.
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~-----~~~v~~~l~Gv~las~ssg--~GE~tfL 134 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF-----SPSVWVRLLGVVLASLSSG--LGEVTFL 134 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee-----ccchhHHHHHHHHHhhhhh--hhHHHHH
Confidence 44666666777888888999999987544444445556666665543 2333333333333333322 2223222
Q ss_pred eecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCc--cHHHHHHHHHHHHHHHhcCCCC
Q 011657 393 MISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGA--GILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 393 ~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
-....+|+. +.+........++.+|+.....+.+ .|. +..+.++..+.++..+..++.+
T Consensus 135 ~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L 195 (402)
T PF02487_consen 135 SLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLL 195 (402)
T ss_pred HHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455532 3344444445566667766654444 443 4466666655544444333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.19 E-value=4.2 Score=38.10 Aligned_cols=52 Identities=8% Similarity=-0.208 Sum_probs=25.6
Q ss_pred HHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011657 283 LFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER 336 (480)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 336 (480)
.......++.+.+-.+++.+..-..+. +........+...+..++.-.+--+
T Consensus 27 GiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~ 78 (406)
T KOG1479|consen 27 GIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAF 78 (406)
T ss_pred hcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666665544232 4444444455544444444444333
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.47 Score=43.26 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=26.4
Q ss_pred eeecccCChhhhhhHHHHHHHHHHHHHHhHhh
Q 011657 392 LMISEVFPLRLRGRGLSVAVLVNFGANALVTF 423 (480)
Q Consensus 392 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~ 423 (480)
-..+|..|++.|....|+.|..+..-..+--.
T Consensus 409 qimQe~VpEseR~vv~gvqnsL~~~ldll~~i 440 (503)
T KOG2601|consen 409 QIMQETVPESERCVVFGVQNSLNSALDLLKDI 440 (503)
T ss_pred HHHHHhcchhhhhhhHhHHHHHHHHHHHHHHh
Confidence 57789999999999999999998877654443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.51 E-value=2.5 Score=38.98 Aligned_cols=147 Identities=14% Similarity=0.004 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh-----hhcCchHHHh-hhH
Q 011657 275 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE-----RLGRRPLLLG-GVS 348 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~-~~~ 348 (480)
+++..+++ ..+....+... ..|.+++..+. |-.+.+....... -.---++...+.| |+|||+..++ +..
T Consensus 33 illLl~LY-llQGiP~GL~~-~iP~lL~ak~v-Syt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 33 ILLLLFLY-LLQGIPLGLIG-AIPLLLQAKGV-SYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred HHHHHHHH-HHcCCchhHhh-hhHHHhcCCCc-chhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 33333443 33444444444 78888887666 4444433322211 1112234455556 9999876443 333
Q ss_pred HHHHHHHHHHHHhhcc-----CCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhh
Q 011657 349 GIVISLFLLGSYYLFL-----DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 423 (480)
Q Consensus 349 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~ 423 (480)
+....+..++...... ..++.......++...+.....-...-.+...+..+++.|-+..........|.+++..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 4444444433211100 01111221111111112222222222344555566677777766666667777777766
Q ss_pred cch
Q 011657 424 AFS 426 (480)
Q Consensus 424 ~~~ 426 (480)
++-
T Consensus 188 ifL 190 (510)
T KOG3574|consen 188 VFL 190 (510)
T ss_pred eee
Confidence 543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.13 E-value=17 Score=33.01 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhHhHHhhhhhhh
Q 011657 105 YGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSLLV 173 (480)
Q Consensus 105 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~g~~~g~~l~ 173 (480)
+..+..+++.+.+.+++|.|.++.++...+... +..=+-+.+..++..-...|+|.+.++..-|.++.
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT 136 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLT 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceec
Confidence 444555566668999999999999888777653 22334567889999999999999985555555554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=88.21 E-value=3.5 Score=39.58 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=20.4
Q ss_pred eeecccCChhhhhhHHHHHHHHHHHHHHhHhhcc
Q 011657 392 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF 425 (480)
Q Consensus 392 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~ 425 (480)
.++-.+..+++++-|........++|.+++-.++
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF 174 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF 174 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence 4445556667777666655555666666655444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.81 E-value=29 Score=30.39 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011657 125 RELILAALLYLVGALVTA 142 (480)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (480)
+.-++|-.+++.+.++.-
T Consensus 56 p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 56 PWAMLGGALWATGNILVV 73 (254)
T ss_pred eHHHhhhhhhhcCceeeh
Confidence 344555566666555443
|
The region concerned is approximately 280 residues long. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=83.69 E-value=12 Score=36.16 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 011657 318 LLGLFKLIMTGLAVLVVERLGR 339 (480)
Q Consensus 318 ~~~~~~~~~~~~~g~l~d~~g~ 339 (480)
...+..++..+....+..|+..
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~ 74 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPV 74 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCc
Confidence 3444444444555555566554
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.59 E-value=29 Score=30.12 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHH
Q 011657 320 GLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 353 (480)
Q Consensus 320 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 353 (480)
.++..+..+.+-.++.|+..|++.+.+.+++.+.
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 3444444455557788999888877766655443
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.02 E-value=5.4 Score=28.95 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Q 011657 95 EIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYL 135 (480)
Q Consensus 95 ~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~ 135 (480)
+.+.-.+.=+++..+.....||+.||| |.++..++..++.+
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllG 84 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLG 84 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344556666777777788889999997 66665554444433
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.28 E-value=9.3 Score=35.31 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHH
Q 011657 401 RLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 447 (480)
Q Consensus 401 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (480)
.......+....+-.....+.|.+.|.+....+.+..-.++++-.++
T Consensus 171 s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 171 SVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred HHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 33333445555566677889999999998877766644444444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 480 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-16 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 48/302 (15%), Positives = 83/302 (27%), Gaps = 88/302 (29%)
Query: 124 RRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLGGYGIGSLLVDLVAGWRYMY 183
R + L L AL L P +++ G + G G + + V
Sbjct: 133 RLQPYLK----LRQAL-LELRPAKNVLIDG---------VLGSG-KTWVALDVC------ 171
Query: 184 GASTPLAVIMGMGMWWL----PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 239
S + M ++WL SP +L M +Q L
Sbjct: 172 -LSYKVQCKMDFKIFWLNLKNCNSPETVL--EM-----LQKLLYQIDPNWTSR--SDHSS 221
Query: 240 SAPTEVDEILTELSYVGEDKE-----VSLREVFHGKCLKALIIGAGLVL---FQQITGQP 291
+ + I EL + + K + L V + K A + ++L F+Q+T
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 292 SVLYYAASIL--QSAGFSAASDATRVSILLGLF-KLIMTGLAVLVVERLGRRPLLLGGVS 348
S L S + + L K + L E L P L ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 349 ---------------------GIVISLFL-------LGSYY----LFLDDV--PAVAVVA 374
+I L + +F P +++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLS 393
Query: 375 LL 376
L+
Sbjct: 394 LI 395
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 63/475 (13%), Positives = 132/475 (27%), Gaps = 108/475 (22%)
Query: 39 RPSPENYSVSAAILPFLFP-----ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSS 93
+P+P + AA + + G+ +GY ++ P L S
Sbjct: 5 KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---EQGFSR 61
Query: 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD----FII 149
++G SG + +++D R L +L L P +
Sbjct: 62 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 121
Query: 150 MVVGRFVFGIGIGLG------------------------------GYGIGSLLVDLVA-- 177
M V F+ G G+G G GI LL L
Sbjct: 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181
Query: 178 --GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQ 235
W A+++ + + + +R++ Q
Sbjct: 182 FNDWHAALYMPAFCAILVALFAFAM--------------------MRDTP---------Q 212
Query: 236 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA-LIIGAGLVLFQQITGQPSVL 294
S G E + ++E++ +++F L L+ +
Sbjct: 213 SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV---------F 263
Query: 295 YYAASIL----------QSAGFSAASDATRVSI--LLGLFKLIMTGLAVLVVERLGRRPL 342
Y + F+ + + G+ ++ G V R R
Sbjct: 264 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323
Query: 343 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL 402
+ ++ + I+ + Y++ P V ++ +++ +G + L E+ P +
Sbjct: 324 GVFFMTLVTIATIV---YWMNPAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKA 379
Query: 403 RGRGLSVAVLVNFGANA----LVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 453
G + A + D G F ++L++ +
Sbjct: 380 AG---TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 9e-05
Identities = 45/383 (11%), Positives = 106/383 (27%), Gaps = 45/383 (11%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI--------LAALLYLVGALVTA 142
+S + G+I + +L+ L ++D LG R+ L+ + A ++
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 143 LAPDFIIMVVGRFVFGIGIGLGGYGIGSLLVDLVAGWRYMYG--------ASTPLAVIMG 194
+ +VG G G + + + + + +G A I+G
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 195 MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSY 254
+ WL ++ L SA ++
Sbjct: 160 IMFTINNQFVFWLGSGCA-----------LILAVLLFFAKTDAPSSATVANAVGANHSAF 208
Query: 255 VGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATR 314
+ R+ K + G+ + Q ++ S +
Sbjct: 209 SLKLALELFRQP---KLWFLSLYVIGVSCTYDVFDQQFANFF-TSFFATGEQGTRV---- 260
Query: 315 VSILLGL---FKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 371
+ + + A L++ R+G + LL + + + +
Sbjct: 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-----FATSALEV 315
Query: 372 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG-ANALVTFAFSPLKD 430
V+ L++ + I+ F +R V A ++ + +
Sbjct: 316 VILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374
Query: 431 LLGAGILFYAFGVIAVLSLAFIF 453
+G + G++A+
Sbjct: 375 SIGFQGAYLVLGLVALGFTLISV 397
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.59 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.55 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.51 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.46 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.43 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.97 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=350.12 Aligned_cols=415 Identities=28% Similarity=0.504 Sum_probs=310.6
Q ss_pred ccchhhhHHhHHHHhhhhhcccccccccccccccccCCCCCCCc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011657 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGIS-WYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122 (480)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G 122 (480)
+++.+..+.+.++.+++.+++|||.++++.++|.+.++....++ ..+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555667777778899999999999999999988765211110 02345678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hcCchHHHHHHHHHHHHHHhH---------------------
Q 011657 123 RRRELILAALLYLVGALVTA------------------LAPDFIIMVVGRFVFGIGIGL--------------------- 163 (480)
Q Consensus 123 rr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~g~g~--------------------- 163 (480)
||+++.++.+++.+++++++ +++|+++++++|+++|+|.|+
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999987
Q ss_pred ---------hHHhhhhhhh----h-------hhhhhHHHHhchhHHHHHHHHHHhcccCchHHHHHhcccccCchhhhHH
Q 011657 164 ---------GGYGIGSLLV----D-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRE 223 (480)
Q Consensus 164 ---------~g~~~g~~l~----~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 223 (480)
.|..++..+. . ....||+.+.+..++.++..+..+++||||+|+..++ +.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~---------~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG---------KQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT---------CHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC---------chh
Confidence 2222222221 1 1237999999999999998899999999999999888 677
Q ss_pred HHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh
Q 011657 224 SAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS 303 (480)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (480)
++.+.+++.++.+.......+.+ ...+ +.++....... ...++..+......+.++.+.+.+.+|.+.+.+.
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQAVQEIK---HSLD--HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhHHHHHHHH---HHHH--hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 77777766654321111000000 0000 00111111111 1233455556666777778888889999999988
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 011657 304 AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQ 383 (480)
Q Consensus 304 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (480)
.+. +...........++..+++.++++++.||+|||+.+..+.....++++.+...... ....+..+....++..++.
T Consensus 307 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 307 LGA-STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred cCC-CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHH
Confidence 888 66777778888899999999999999999999999999888888877776654332 3334444555556666777
Q ss_pred cccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH------hhCccHHHHHHHHHHHHHHHhcCCCCC
Q 011657 384 LSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD------LLGAGILFYAFGVIAVLSLAFIFXXXX 457 (480)
Q Consensus 384 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 457 (480)
.++.++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.+++.|
T Consensus 385 ~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 385 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 77888888999999999999999999999999999999988776543 345667889999999999998888899
Q ss_pred CCCCChhhhhhhhhccCCCC
Q 011657 458 XXXXSFQRQRGLRLRRSRPN 477 (480)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~ 477 (480)
|||+|+.||.++..++++++
T Consensus 465 ETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 465 ETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp CCTTCCHHHHGGGTC-----
T ss_pred CCCCCCHHHHHHHhCCCCcc
Confidence 99999999987766554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=285.22 Aligned_cols=361 Identities=15% Similarity=0.083 Sum_probs=258.6
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 130 (480)
+..+....++.+..+++....++.+|.+.++ + .+..+.+++.+++.++..++++++|+++||+|||++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 3444555667788888888999999999988 8 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhh
Q 011657 131 ALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLL 172 (480)
Q Consensus 131 ~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l 172 (480)
.++.+++.+++++ ++|++.++++|+++|++.+. +|+.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999887 555555555
Q ss_pred hhhhhh-hHHHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Q 011657 173 VDLVAG-WRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT 250 (480)
Q Consensus 173 ~~~~~~-wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (480)
.+.. + ||+.|++.++++++ .++..+++||+|+....++.+ +.++..+ .+. .+
T Consensus 179 ~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------~~~---~~ 232 (451)
T 1pw4_A 179 MAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EYKNDYP-------------------DDY---NE 232 (451)
T ss_dssp HHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT---TTCCC-----------------------------
T ss_pred HHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh---hhccccc-------------------ccc---hh
Confidence 5444 7 99999999988877 445566788887532111100 0000000 000 00
Q ss_pred hhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHH
Q 011657 251 ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGL 329 (480)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 329 (480)
+.+++...++...++.++++..+...+..++.. ........+.|.++++ .|. +..+.+.......++.+++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 307 (451)
T 1pw4_A 233 KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTLL 307 (451)
T ss_dssp ------CCTHHHHHHTSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHBTTBSCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111345556555544443333322 2334566788888877 677 8888999999999999999999
Q ss_pred HHHHHhhh--cCchHHHhhhHHHH-HHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhH
Q 011657 330 AVLVVERL--GRRPLLLGGVSGIV-ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRG 406 (480)
Q Consensus 330 ~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 406 (480)
.+++.||+ +||+.+..+..+.. ++++++.. ....+.+.......+ .+.......+....+..|.+|++.|+++
T Consensus 308 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 383 (451)
T 1pw4_A 308 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTA 383 (451)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---CCTTCHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH---hcccCHHHHHHHHHH-HHHHHhchHHHHHHHHHHHhchhhhhhH
Confidence 99999999 99988877666555 44433321 111233333333333 3333333345556889999999999999
Q ss_pred HHHHHHHHHH-HHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCC
Q 011657 407 LSVAVLVNFG-ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 407 ~~~~~~~~~~-g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.|+.+.+.++ |..++|.+.|.+.+..|+...|++.+++.+++.++.++
T Consensus 384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999888888777766554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=268.24 Aligned_cols=335 Identities=15% Similarity=0.115 Sum_probs=250.8
Q ss_pred HHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011657 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (480)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 135 (480)
.+++..+..+++....++.+|.+.++ +|++..+.+++.+.+.+++.++++++|+++||+|||++++++.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 34555677778888899999999887 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhh-hhhh
Q 011657 136 VGALVT---ALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLV-DLVA 177 (480)
Q Consensus 136 ~~~~~~---~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~-~~~~ 177 (480)
++.+++ ++++|++.++++|+++|++.+. +|+.+++.+. ....
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 8999999999999999999987 5666666665 3322
Q ss_pred h------------------------hHHHHhchhHHHHHHHHHHhc--ccCchHHHHHhcccccCchhhhHHHHHHHHHH
Q 011657 178 G------------------------WRYMYGASTPLAVIMGMGMWW--LPASPRWLLLCAMKRKGDMQDLRESAISCLCR 231 (480)
Q Consensus 178 ~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (480)
. ||+.|++.+++.++..+..++ .||+++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------------------ 238 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------------------------ 238 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC------------------------
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc------------------------
Confidence 2 999998888777664444433 35543200
Q ss_pred HhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHH-HHhc-CCCCC
Q 011657 232 LRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSA-GFSAA 309 (480)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~ 309 (480)
+ .++++++.+..++++++++..+...+...+.... ......+.|.+ +++. |. +.
T Consensus 239 ----~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~ 294 (438)
T 3o7q_A 239 ----H---------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGM-TA 294 (438)
T ss_dssp ----C---------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSTTC-CH
T ss_pred ----c---------------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCc-ch
Confidence 0 0001122234566777777666655544443332 23555677777 7776 77 88
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccc
Q 011657 310 SDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPI 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
.+++.......++.+++.++.+++.||++||+.+..+..+..++.+++.. ..+. .......+.+. ......+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~g~-~~~~~~~~ 367 (438)
T 3o7q_A 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-----AGGH-VGLIALTLCSA-FMSIQYPT 367 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CCHH-HHHHHHHHHHH-HHTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-----cCCc-HHHHHHHHHHH-HHHHHHHH
Confidence 89999999999999999999999999999999998888877777665543 1222 23333333333 33344567
Q ss_pred cceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-ccHHHHHHHHHHHHHHHhcCC
Q 011657 390 GWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFX 454 (480)
Q Consensus 390 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 454 (480)
.+++..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..| ++..|++.+++.++..++.+.
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 778888999966 888888877 677999999999999999999 888888877666665555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=243.45 Aligned_cols=362 Identities=13% Similarity=0.057 Sum_probs=219.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhH----
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGL---- 163 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~---- 163 (480)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.+++++++|++.++++|+++|++.+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 8999999999999999999999999999999999999999887
Q ss_pred --------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcc-cCchHHHHHh
Q 011657 164 --------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-PASPRWLLLC 210 (480)
Q Consensus 164 --------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~ 210 (480)
+|+.+++.+.+.. +||+.|++.++..++..+..++. ++.. ..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~ 204 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTL---DPH 204 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccc---ccc
Confidence 5555565555554 89999999877776644443332 2211 011
Q ss_pred cccccCchhhhHHHHHHHHHH---------------HhCCCCCCCChhhHHHHHHh------hhcccccccccHHHHhhh
Q 011657 211 AMKRKGDMQDLRESAISCLCR---------------LRGQSIGDSAPTEVDEILTE------LSYVGEDKEVSLREVFHG 269 (480)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 269 (480)
+.. .+.+.+.++..+..+. ......+.+........... .....+.......+..+.
T Consensus 205 ~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 205 YLR--PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp CSC--CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccC--CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 101 1111112222222211 11112111111111000000 000000000000111111
Q ss_pred hhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHH----
Q 011657 270 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL---- 344 (480)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---- 344 (480)
.......+...+.+... .....+.+.+.++ .+. +..+.+.......++.+++.++.+++.||++||+...
T Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDS-SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCC-SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhcc-CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 11122222222222222 2233345555555 344 5577888888999999999999999999999986554
Q ss_pred -hhhHHHHHHHHHHHHHhhc---cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHh
Q 011657 345 -GGVSGIVISLFLLGSYYLF---LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 420 (480)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i 420 (480)
.+..+.+++++++...... ..+.+........++.+.......+..+.++.|.+|++.|+++.|+.+....+|..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5556555555554432111 111233333333333344444445667789999999999999999999999999999
Q ss_pred HhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 011657 421 VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXS 462 (480)
Q Consensus 421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (480)
++.+.+.+.+ .++...|.+.+++++++.++.+.+.++.+++
T Consensus 438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888766 4667788888888777777666655555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-30 Score=240.11 Aligned_cols=321 Identities=14% Similarity=0.095 Sum_probs=232.5
Q ss_pred HhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011657 57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV 136 (480)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 136 (480)
+++..++.+++.....+.+|.+.++ +|.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 3455567777888888999999888 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhhhhhhhhhHHH
Q 011657 137 GALVTALAPDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLLVDLVAGWRYM 182 (480)
Q Consensus 137 ~~~~~~~~~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l~~~~~~wr~~ 182 (480)
+.++.++++|++.+++.|+++|++.+. +|+.+++.+.+.. +||+.
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~ 156 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHH
Confidence 999999999999999999999999886 5566666665554 99999
Q ss_pred HhchhHHHHHHHH-HHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccc
Q 011657 183 YGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV 261 (480)
Q Consensus 183 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (480)
|++.+++.++..+ ..+++||+++.. + ++++.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------------------~~~~~~~ 190 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPVD---A-------------------------------------------PRTRLLT 190 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTTT---C-------------------------------------------CCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCCC---c-------------------------------------------ccccHHH
Confidence 9998888877554 555678775310 0 0112233
Q ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 011657 262 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR 340 (480)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 340 (480)
++++.++++..+...+...+... .......+.|.++++ .|. ++.+.+.......++.+++.++.+++.||.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 191 SYKTLFGNSGFNCYLLMLIGGLA----GIAAFEACSGVLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSCSSHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777766555444433332 223455566666555 676 778889999999999999999999999999872
Q ss_pred hHHHhhhHH-HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHH
Q 011657 341 PLLLGGVSG-IVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 419 (480)
Q Consensus 341 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 419 (480)
+..+..+ ...+...+..... ...+.+.......+...+.+ ...+...++..|..| ++|+++.|+.+....+|..
T Consensus 266 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 266 --MWQSVICCLLAGLLMWIPDWF-GVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp --HHHHHHHHHHTSSSSSHHHHH-HHHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 2222222 2222221111000 01122222333333333333 345666689999998 8999999999999999999
Q ss_pred hHhhcchhhHHhhCccHHHHHH
Q 011657 420 LVTFAFSPLKDLLGAGILFYAF 441 (480)
Q Consensus 420 i~~~~~~~~~~~~g~~~~~~~~ 441 (480)
++|.+.+.+.+..++...+.+.
T Consensus 341 ~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 341 VLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccHHHHHH
Confidence 9999999998877776655553
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=232.50 Aligned_cols=325 Identities=14% Similarity=0.080 Sum_probs=198.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHhcCchH-HHHHHHHH----HHHH
Q 011657 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA---LVTALAPDFI-IMVVGRFV----FGIG 160 (480)
Q Consensus 89 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l----~G~g 160 (480)
+|.+..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ..+.+++... .++..+++ .|++
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999998887765432 1112221110 01112222 1111
Q ss_pred HhH--------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcccCchHHHH
Q 011657 161 IGL--------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLL 208 (480)
Q Consensus 161 ~g~--------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 208 (480)
.+. +|+.+++.+.+ .+||+.|++.++..++..+..++.+|+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 110 45555555544 279999998887765554444444433210
Q ss_pred HhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhh
Q 011657 209 LCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQIT 288 (480)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (480)
+. +. .+.. + +..++....+++++++++..+...+.......
T Consensus 194 -~~-----~~----------------~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 234 (417)
T 2cfq_A 194 -SA-----TV----------------ANAV------------G-ANHSAFSLKLALELFRQPKLWFLSLYVIGVSC---- 234 (417)
T ss_dssp -SS-----CS----------------SSSS------------S-SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH----
T ss_pred -cc-----cc----------------cccc------------c-cccccccHHHHHHHhcCCchhhHHHHHHHHHH----
Confidence 00 00 0000 0 00001111234556666655544332222211
Q ss_pred ChhHHHHhHHHHHHhc-CC--CCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccC
Q 011657 289 GQPSVLYYAASILQSA-GF--SAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD 365 (480)
Q Consensus 289 ~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (480)
.+.....+.|.++.+. +. .+....+.......++.+++.++.++++||+|||+++..+..+.+++.+++.. .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~ 309 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----A 309 (417)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----C
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----h
Confidence 1122333455555443 21 02334567777778888999999999999999999888777766665444321 1
Q ss_pred CchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHH-HHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHH
Q 011657 366 DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVA-VLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 444 (480)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 444 (480)
.+.+..+....+..... ....+..+.++.|.+|++.|+++.++. +..+.+|++++|.+.|.+.+..|+...|.+.+++
T Consensus 310 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 310 TSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp CSHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 22333222222222222 122233457899999999999999995 7888999999999999999988888888888888
Q ss_pred HHHHHHhcCCCCCCCCCC
Q 011657 445 AVLSLAFIFXXXXXXXXS 462 (480)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (480)
++++.++.+...+|+++.
T Consensus 389 ~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHhhhcCCCch
Confidence 888877766666654443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=208.63 Aligned_cols=361 Identities=14% Similarity=0.109 Sum_probs=187.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHhH-----
Q 011657 91 LSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGL----- 163 (480)
Q Consensus 91 ~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~g~----- 163 (480)
.+..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|+++|++.+.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 999999999999999887
Q ss_pred --------------------------------hHHhhhhhhhhhhhhhHHHHhchhHHHHHHHHHHhcc-cCchHHHHHh
Q 011657 164 --------------------------------GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-PASPRWLLLC 210 (480)
Q Consensus 164 --------------------------------~g~~~g~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~ 210 (480)
+|+.+++.+.+.. +||+.|++.+++.++..+..++. ++.++ .
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~- 205 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWLGRKRYIH---M- 205 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHSSSSSCCC---C-
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHhcccccc---c-
Confidence 4444455444444 89999999888877654444432 21110 0
Q ss_pred cccccCchhhhHHHHHHHHHH-HhCCCCCCCChhhHHHHHH------hhh-----------------cccccccccHHHH
Q 011657 211 AMKRKGDMQDLRESAISCLCR-LRGQSIGDSAPTEVDEILT------ELS-----------------YVGEDKEVSLREV 266 (480)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~-----------------~~~~~~~~~~~~~ 266 (480)
. ++.+ ...+..+.+.. .++.....+.......... ... ..++..+..+++.
T Consensus 206 ~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (524)
T 2xut_A 206 P--PEPK---DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280 (524)
T ss_dssp C-------------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHH
T ss_pred C--CCCc---cchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHH
Confidence 0 0000 00000000000 0000000000000000000 000 0000000001000
Q ss_pred -----------hhh-hhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCC-cchHHHHHHHHHHHHHHHHHHHHH
Q 011657 267 -----------FHG-KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAA-SDATRVSILLGLFKLIMTGLAVLV 333 (480)
Q Consensus 267 -----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l 333 (480)
.++ +....... ...........+.......+.+....+. +. ...+.......++.+++.++.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (524)
T 2xut_A 281 ERARKSHPDAAVDGVRSVLRILV-LFALVTPFWSLFDQKASTWILQANDMVK-PQWFEPAMMQALNPLLVMLLIPFNNFV 358 (524)
T ss_dssp HHSCCSCCSSSSTTTTTHHHHHH-HHTTSHHHHTTTSSTTTHHHHHHHHSCC-CSSSCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred hhhhccccHhHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhHHhHHhcCC-CeeecHHHHHHHHHHHHHHhHHHHHhh
Confidence 001 11111111 1111111111111111122222223222 11 245555555556666666665554
Q ss_pred H----hhhcC----chHHHhhhHHHHHHHHHHHHHhhc---cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhh
Q 011657 334 V----ERLGR----RPLLLGGVSGIVISLFLLGSYYLF---LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL 402 (480)
Q Consensus 334 ~----d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 402 (480)
. +|.++ ++.+..+..+.+++++++...... ....+...+....++.+.......+..++++.|..|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 359 LYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp ------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred hHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 3 44433 234555666655555543321000 001122223333333333333345666689999999999
Q ss_pred hhhHHHHHHHHHHHHHHhHhhcchhhHHhh----------Cc-cHHHHHHHHHHHHHHHhcCCCCCCCCCCh
Q 011657 403 RGRGLSVAVLVNFGANALVTFAFSPLKDLL----------GA-GILFYAFGVIAVLSLAFIFXXXXXXXXSF 463 (480)
Q Consensus 403 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (480)
|++++|+.++...+|+.++|.+.+.+.+.. +. ...|++.+++++++.++.+++.++.++++
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999887632 11 22367777777777777666666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-15 Score=141.57 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHH
Q 011657 276 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 355 (480)
+....+..+........+....|.+.++. . +..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-F-SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-T-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33333333333333445566778887888 6 899999999999999999999999999999999999999999888887
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhC-c
Q 011657 356 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-A 434 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g-~ 434 (480)
++.+.... ..+.+..++. .++.+.......+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..| |
T Consensus 108 ~~~~~~~~-~~~~~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w 185 (451)
T 1pw4_A 108 FMGFVPWA-TSSIAVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 185 (451)
T ss_dssp HHHHCHHH-HSSSSHHHHH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred HHHhhhhc-cccHHHHHHH-HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 77641110 1233333333 3333443444456666899999999999999999999999999999999999899898 9
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCC
Q 011657 435 GILFYAFGVIAVLSLAFIFXXXXXX 459 (480)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
++.|++.+++.++..++.++..+|+
T Consensus 186 ~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 186 HAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999998888776665554445544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-14 Score=134.35 Aligned_cols=161 Identities=11% Similarity=-0.032 Sum_probs=124.2
Q ss_pred hChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCc
Q 011657 288 TGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV 367 (480)
Q Consensus 288 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (480)
..........|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+++..... ..+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~ 116 (438)
T 3o7q_A 40 VANNLNDILLPQFQQAFTL-TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMN 116 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TTC
T ss_pred HHHHhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--ccc
Confidence 3345666778888899999 8999999999999999999999999999999999999999998888877632111 233
Q ss_pred hhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhH-HhhC-------------
Q 011657 368 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK-DLLG------------- 433 (480)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~g------------- 433 (480)
.+..++ ..++.+.......+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 117 ~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (438)
T 3o7q_A 117 YTLFLV-GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE 195 (438)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHH
T ss_pred HHHHHH-HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 333333 3334444444445566789999999999999999999999999999999999988 5444
Q ss_pred ------------ccHHHHHHHHHHHHHHHhc
Q 011657 434 ------------AGILFYAFGVIAVLSLAFI 452 (480)
Q Consensus 434 ------------~~~~~~~~~~~~~~~~~~~ 452 (480)
|++.|++.+++.++..++.
T Consensus 196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6778877666655554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-14 Score=132.56 Aligned_cols=166 Identities=11% Similarity=0.032 Sum_probs=133.5
Q ss_pred hhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchh
Q 011657 290 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (480)
........|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++... ++.
T Consensus 16 ~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNV-REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSS-TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHHhhhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccH
Confidence 34555667777888888 88999999999999999999999999999999999999988888888776642 233
Q ss_pred HHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHH
Q 011657 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 449 (480)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (480)
..+....+..+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.+++.++..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33333344444444445566678999999999999999999999999999999999999998899999998888888777
Q ss_pred HhcCCCCCCCCCC
Q 011657 450 AFIFXXXXXXXXS 462 (480)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (480)
+...+..||++++
T Consensus 169 ~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 169 FSMARWMPETRPV 181 (375)
T ss_dssp CCCCCSSCCCSTT
T ss_pred HHHHHHCcccCCC
Confidence 7666666665443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=134.32 Aligned_cols=155 Identities=12% Similarity=0.113 Sum_probs=120.3
Q ss_pred HHHHhHHHHHHh------cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hcCchHHHhhhHHHHHHHHHHHHHhhcc
Q 011657 292 SVLYYAASILQS------AGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFL 364 (480)
Q Consensus 292 ~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (480)
....+.+.++++ .|. +..+.++..+...++..++.++.|+++|| +|||+++..+..+..++.+++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHI-TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 344445555544 688 88999999999999999999999999999 89999999999888888776653
Q ss_pred CCchhHHHHHHHHHHHHHhcccccccceeecccCChhh--hhhHHHHHHHHHHHHHHhHhhcchhhHHhhCccHHHHHHH
Q 011657 365 DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL--RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFG 442 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~ 442 (480)
.++.+..++..++ .+.......+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus 105 ~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 PFGASALFGSIIL-IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CCSTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhhHHHHHHHHHH-HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2333333333333 333333345666789999999988 7888888999999999999999999999999999999887
Q ss_pred HHHHHHHHhcC
Q 011657 443 VIAVLSLAFIF 453 (480)
Q Consensus 443 ~~~~~~~~~~~ 453 (480)
++.+++.+..+
T Consensus 184 ~~~~~~~~~~~ 194 (491)
T 4aps_A 184 IGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666655543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=126.81 Aligned_cols=157 Identities=11% Similarity=0.070 Sum_probs=120.4
Q ss_pred HHHHhHHHHH-HhcC------CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-cCchHHHhhhHHHHHHHHHHHHHhhc
Q 011657 292 SVLYYAASIL-QSAG------FSAASDATRVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLF 363 (480)
Q Consensus 292 ~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
....+.+.++ ++.| . +..+.++..+...++..++.++.|+++||+ |||+++..+.++..++.+++..
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEEL-RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI---- 104 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSST-TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----
Confidence 3344445444 5567 7 889999999999999999999999999999 9999999988888887776654
Q ss_pred cCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHH---HHHHHHHHHHhHhhcchhhHHhhCccHHHHH
Q 011657 364 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV---AVLVNFGANALVTFAFSPLKDLLGAGILFYA 440 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~ 440 (480)
...+...+....++.+.......+...+++.|.+|+++|+.+.+. .+...++|..++|.+.+.+.+..||+..|++
T Consensus 105 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 105 -FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred -hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 221333333333344444444556777899999999999876666 8888999999999999999998999999998
Q ss_pred HHHHHHHHHHhcCC
Q 011657 441 FGVIAVLSLAFIFX 454 (480)
Q Consensus 441 ~~~~~~~~~~~~~~ 454 (480)
.+++.+++.++.++
T Consensus 184 ~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 184 PGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 88877766655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-10 Score=107.93 Aligned_cols=120 Identities=17% Similarity=-0.051 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHHHHHHHHHHhhcc------------CCchhHHHHHHHHH
Q 011657 311 DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFL------------DDVPAVAVVALLLY 378 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 378 (480)
..++..+...++.++|.++.|+++||+|||+.+.++.++..++.++.++..... ...+...++..-++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 456777888899999999999999999999999999998888877765311000 02334444444444
Q ss_pred HHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHH
Q 011657 379 VGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 430 (480)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 430 (480)
.+....+..+...+++.|..|++.|+...++.+....+|..+++.+......
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 4444444556777899999999999999999999888888777766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.4e-11 Score=111.40 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=104.0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHH
Q 011657 266 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL 344 (480)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 344 (480)
.+|++.++.......+.+.. +.....+.|.++++ .|. +..+.++..+...++..++.++.|+++||+|||+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~-s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~ 77 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFI----MGAYFPFFPIWLHDINHI-SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHH----HHHHTTTHHHHHHTTTCC-CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH
T ss_pred cccccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45556555444433332222 23444567776665 677 8899999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHH-Hhhc-cCCchhHHHHHHHHHHHHHhcccccccceeecccCCh--hhhhhHHHHHHHHHHHHHHh
Q 011657 345 GGVSGIVISLFLLGS-YYLF-LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL--RLRGRGLSVAVLVNFGANAL 420 (480)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~g~~i 420 (480)
.+..+..+....+.. .... ................+....... ....+..++ +.++.+.|..+....+|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 153 (417)
T 2cfq_A 78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGA----PAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp HHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTH----HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 776655432211110 0000 000001000000000000000111 122222222 34566777777778889999
Q ss_pred HhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCC
Q 011657 421 VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
+|.+.+.+.+ .+++..|++.++..++..+..++..+|
T Consensus 154 ~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 154 GASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp HHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 9999998887 578888877665554444444433333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 480 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-17 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-10 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 82.8 bits (203), Expect = 1e-17
Identities = 53/385 (13%), Positives = 114/385 (29%), Gaps = 12/385 (3%)
Query: 80 SPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL 139
+ + + S ++G SG + +++D R L +L L
Sbjct: 45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 104
Query: 140 VTALAPD----FIIMVVGRFVFGIGIGLGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM 195
P +M V F+ G G+G G +V + S
Sbjct: 105 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164
Query: 196 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLC-----RLRGQSIGDSAPTEVDEILT 250
G + + + L R QS G E
Sbjct: 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP 224
Query: 251 ELSYVGEDKEVSLREVFHGKCLK-ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAA 309
+ ++E++ +++F L L+ + + +L ++ + L+ A
Sbjct: 225 DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284
Query: 310 SDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 369
++ L + T L + +++ R GV + + Y++ P
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344
Query: 370 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTFAFSPL 428
V ++ +++ +G + L E+ P + G L G + +
Sbjct: 345 VDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 403
Query: 429 KDLLGAGILFYAFGVIAVLSLAFIF 453
D G F ++L++ +
Sbjct: 404 VDFFGWDGGFMVMIGGSILAVILLI 428
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 54/391 (13%), Positives = 103/391 (26%), Gaps = 16/391 (4%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+S + G+I + +L+ L ++D LG R+ L+ LV +
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 149 IMVVGRFVFGIGIG-LGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWL 207
++ V I G G+ + + A + S M A +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157
Query: 208 LLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF 267
+ S + + + AP+ + E+F
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217
Query: 268 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMT 327
L L + V + S + ++ L IM
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF 277
Query: 328 GLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 387
+++ G+ LLL G V A+ VV L
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSV-------RIIGSSFATSALEVVILKTLHMFEVPFLL 330
Query: 388 PIGWLMISEVFPLRLRGRGLSVAVLVNFG-ANALVTFAFSPLKDLLGAGILFYAFGVIAV 446
+ I+ F +R V A ++ + + +G + G++A+
Sbjct: 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390
Query: 447 LSLAFIFXXXXXXXXSFQRQRGLRLRRSRPN 477
+ L L R + N
Sbjct: 391 GFTLISV-------FTLSGPGPLSLLRRQVN 414
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.55 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.14 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.6e-35 Score=278.01 Aligned_cols=368 Identities=14% Similarity=0.074 Sum_probs=246.7
Q ss_pred HHhHHHHhhhhhcccccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011657 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (480)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 130 (480)
|..+..+.++++...++...++.+.|.+. | +|+|..|.|++.+++.+++.++++++|+++||+|||+++.++
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~-------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-E-------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S-------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 44555667777888888888888888876 4 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHhH----------------------------------hHHhhhhhh
Q 011657 131 ALLYLVGALVTALA----PDFIIMVVGRFVFGIGIGL----------------------------------GGYGIGSLL 172 (480)
Q Consensus 131 ~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~g~g~----------------------------------~g~~~g~~l 172 (480)
.++.+++.++++++ ++++.+++.|++.|++.|. +++.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 99999999998876 5789999999999999887 334444444
Q ss_pred hhhhhhhHHHHhchhHHHHHH-HHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHh
Q 011657 173 VDLVAGWRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTE 251 (480)
Q Consensus 173 ~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (480)
.....+||+.|++.+++.++. ++.+++.+|+|+.......+ +......++..+.
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 230 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-------------------------EYKNDYPDDYNEK 230 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-------------------------TTCCC--------
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh-------------------------hhhhhcccchhhc
Confidence 444558999999998888774 44455566665421111000 0000000000000
Q ss_pred hhcccccccccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 011657 252 LSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAV 331 (480)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 331 (480)
.+.+....+...+..++++..+.......+. .........+.+.++.+....+..+.+.......++.+++.++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (447)
T d1pw4a_ 231 AEQELTAKQIFMQYVLPNKLLWYIAIANVFV----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 306 (447)
T ss_dssp -----CCTHHHHHHTSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHcCchHHHHHHHhhhh----hhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhh
Confidence 0111112222334445544444333322222 222335556677776654433888999999999999999999999
Q ss_pred HHHhhhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHH
Q 011657 332 LVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV 411 (480)
Q Consensus 332 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 411 (480)
++.||++|++..........+..............+.+...+..+ ..++...+..+....+..|.+|++.|+++.|+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 385 (447)
T d1pw4a_ 307 WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI-VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 385 (447)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH-HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred hhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999987655444444333333333222222233333333333 3333333444566688899999999999999999
Q ss_pred HHHHHH-HHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCC
Q 011657 412 LVNFGA-NALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 456 (480)
Q Consensus 412 ~~~~~g-~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (480)
.+.+++ ..++|.+.|.+.|..|+...+++.+++++++.++.+.+.
T Consensus 386 ~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 386 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 988875 566889999999999999888888877777766655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-29 Score=239.26 Aligned_cols=347 Identities=14% Similarity=0.024 Sum_probs=223.6
Q ss_pred hccccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011657 62 LLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV 140 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 140 (480)
++..+..+...+.+|. +.++ +|+|..++|++.+++.+++.++++++|+++||+|||++++++..+..++.++
T Consensus 17 f~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~ 89 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3334444556667775 4444 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHhH----------------------------------------hHHhhhhhhhhhhhhhH
Q 011657 141 TALAPDFIIMVVGRFVFGIGIGL----------------------------------------GGYGIGSLLVDLVAGWR 180 (480)
Q Consensus 141 ~~~~~~~~~l~~~r~l~G~g~g~----------------------------------------~g~~~g~~l~~~~~~wr 180 (480)
..+..+.......+++.++..+. +|+.+++.+... +|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 167 (417)
T d1pv7a_ 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQ 167 (417)
T ss_dssp HHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHH
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--ccc
Confidence 88887766554444433332221 455555555443 455
Q ss_pred HHHhchhHHHHH-HHHHHhcccCchHHHHHhcccccCchhhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhcccccc
Q 011657 181 YMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 259 (480)
Q Consensus 181 ~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (480)
..+........+ ..+..+..+|+|+....++ + +.+..+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---------------------------~~~~~~~~~ 209 (417)
T d1pv7a_ 168 FVFWLGSGCALILAVLLFFAKTDAPSSATVAN-----------A---------------------------VGANHSAFS 209 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH-----------H---------------------------HHSCCCCCC
T ss_pred ccccchhhHHHHHHHHHHHHhcccccchhhhh-----------h---------------------------hhhhccccc
Confidence 555555555444 5555666666643110000 0 000001111
Q ss_pred cccHHHHhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHh----cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 011657 260 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS----AGFSAASDATRVSILLGLFKLIMTGLAVLVVE 335 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 335 (480)
.....+.++.+..+.............. ......+.+... .+. +....+.......++..++..+.+++.|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (417)
T d1pv7a_ 210 LKLALELFRQPKLWFLSLYVIGVSCTYD----VFDQQFANFFTSFFATGEQ-GTRVFGYVTTMGELLNASIMFFAPLIIN 284 (417)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTSSSCHHH-HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHH----hhhcccccccccccccccc-chhhhcccccccccccccchhhhhhhhc
Confidence 1222233333333333332222222211 111222222222 122 3345666778888888999999999999
Q ss_pred hhcCchHHHhhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHH-HHH
Q 011657 336 RLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV-LVN 414 (480)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~ 414 (480)
|.++|+.+..+..+.+++.+.+.. ..+.+..+....+.+.+.+. ..+...+++.|.+|++.|+++.|+.. ...
T Consensus 285 r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (417)
T d1pv7a_ 285 RIGGKNALLLAGTIMSVRIIGSSF-----ATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFK 358 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTH
T ss_pred ccccccchhhhHHHHHHhhhcccc-----ccccchhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHH
Confidence 999999999888888777766553 23444444444444433333 34566689999999999999999865 457
Q ss_pred HHHHHhHhhcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCCCChhhh
Q 011657 415 FGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQ 466 (480)
Q Consensus 415 ~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (480)
.+|..++|.+.|.+.|..|++..+++.+++.++..++..+..++++....++
T Consensus 359 ~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 7999999999999999999999999998888877777666666555554433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.1e-14 Score=137.44 Aligned_cols=182 Identities=15% Similarity=0.058 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHhhhHHHHH
Q 011657 273 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 352 (480)
|..+...++.++........+....|. .++.|. +..+.++..+...++..++.++.|+++||+|||+++..+.++.++
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQGF-SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSSTT-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 444444444333333222234445564 466788 999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCChhhhhhHHHHHHHHHHHHHHhHhhcchhhHHhh
Q 011657 353 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 432 (480)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 432 (480)
+.++++...... .+.+..++... ..+.......+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..
T Consensus 102 ~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 102 VMLFMGFVPWAT-SSIAVMFVLLF-LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHCHHHH-SSSSHHHHHHH-HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHhhccccchhh-hhHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 877766432111 12223333333 3333333334556689999999999999999999999999999999888777654
Q ss_pred -CccHHHHHHHHHHHHHHHhcCCCCCC
Q 011657 433 -GAGILFYAFGVIAVLSLAFIFXXXXX 458 (480)
Q Consensus 433 -g~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480)
+|+..+++.+.+.++..++.+.+.++
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred hcccccchhhhhhHHHHHHHHHHhccc
Confidence 67888888777766665555444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=6.4e-11 Score=109.42 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=107.2
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHH
Q 011657 266 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL 344 (480)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 344 (480)
.+|++++|.+.+..++.++. ......+.|.++ ++.|. +..+.++..+...++..++.++.|+++||+|||+.+.
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~----~~~~~~~l~~~l~~~~g~-s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFI----MGAYFPFFPIWLHDINHI-SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred cccCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 45777777665544444332 223444556555 45788 8999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhcccccccceeecccCC--hhhhhhHHHHHHHHHHHHHHhHh
Q 011657 345 GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP--LRLRGRGLSVAVLVNFGANALVT 422 (480)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~g~~i~~ 422 (480)
.+..+..++..++....... ......+...............+.. ....+..+ .+.+....+........+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (417)
T d1pv7a_ 78 WIITGMLVMFAPFFIFIFGP-LLQYNILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155 (417)
T ss_dssp HHHHHHHHTHHHHHHHTHHH-HHHTTCHHHHHHTTTTGGGGGTTHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhhcccccccchh-hcccccccchhhhhHHHHHHHhhhhcccccccc
Confidence 88777777666655421100 0000011111111111111111111 11111111 13344566677777788888888
Q ss_pred hcchhhHHhhCccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 011657 423 FAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXX 460 (480)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (480)
.+.+.+.+..++ ..+........+..++.++..++.+
T Consensus 156 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T d1pv7a_ 156 SIVGIMFTINNQ-FVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp HHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred cccccccccccc-ccccchhhHHHHHHHHHHHHhcccc
Confidence 888887775444 4444444444444444344444433
|