Citrus Sinensis ID: 011681


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVADTAVYHEGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQKQMGRLTAEFPSDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGPTGQFDYLIENLSEYYLT
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccccccHHHcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEEEccccccEEEEEEEEcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccc
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccHHHHHHHHHHHHHcccccHcccccccccccccccccccEEccccEEccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccHHHcccccEccccccccccHHHHHHcccHHHHHHHHcccccccccEEccccccccccHHHHHHHHHHccccccccccccccccccccccHHHccEEEcccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccEEcccccccccEEEEEEEEEcccccEEEEEEEEEEccccccccccHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccc
mvgkgaktncksashklfKDKAKTRVDDLQGKFLDLQFarkesrtvdVSLLEEQVHQMLREWKAelhepspasslqqdgslgfsSDIYRLLQLCEeeddatstltapkpepndqvlpvadtavyhegeqqhsfplvdqcknsssgvhSTAInnlegstlldyhhfdLHQEFEQNfyagynvsnfcgedamqqisgylpgicpppsaflgpkcalwdcprpaqgvdwyqdYCSGFHAalafsegppgmgpvlrpggiglkDGLLFAALSARaqgkdvgipecegaatakspwnapelfdlsvlEGETIREWlffdkprrafesgnrkqrslpdysgrgwheSRKQVMNEFgglkrsyymdpqplnhfeWHLYEYEINKCDACALYRLELKlvdgkksakgklanDSVADLQKQMGrltaefpsdnkrlVKGRAKVnakagvggniypasnvvastnekfdygptgqfDYLIENLSEYYLT
mvgkgaktncksashklfkdkaktrVDDLQGKFLdlqfarkesrtvdvSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFSSDIYRLLQLCEEEDDATStltapkpepndqvLPVADTAVYHEGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGaatakspwnaPELFDLSVLEGETIREWLffdkprrafesgnrkqrslpdysgrgwhesrKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGkksakgklandsvADLQKQMGrltaefpsdnkrlvKGRAKVnakagvggniypaSNVVASTNEKFDYGPTGQFDYLIENLSEYYLT
MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVADTAVYHEGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQKQMGRLTAEFPSDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGPTGQFDYLIENLSEYYLT
****************************LQGKFLDLQFARK**RTVDVSLLEEQVHQML************************SSDIYRLLQLC****************************VY***********************STAINNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDK*****************************VMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVD****************************************KVNAKAGVGGNIYPASNVVASTNEKFDYGPTGQFDYLIENLSEYY**
***********************TRVDDLQGKFLDLQF********DVSLLEEQVHQMLREWK**********************************************************AVYHEGEQQHSFPLVDQCKNSSSG*****INNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPR****************SGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLEL**********************KQMG*******************************************FDYGPTGQFDYLIENLSEYYL*
**********KSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLREWKAE*************GSLGFSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVADTAVYHEGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQKQMGRLTAEFPSDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGPTGQFDYLIENLSEYYLT
***************KLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLREWKAELH****************SSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVADTAVYHEGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFE******RSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDG**************************************************I*****VVASTNEKFDYGPTGQFDYLIENLSEYYLT
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MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVADTAVYHEGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQNFYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQKQMGRLTAEFPSDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGPTGQFDYLIENLSEYYLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query479 2.2.26 [Sep-21-2011]
Q9SGQ0486 Transcription factor VOZ1 yes no 0.974 0.960 0.709 0.0
Q9SLB9450 Transcription factor VOZ2 no no 0.799 0.851 0.519 1e-110
>sp|Q9SGQ0|VOZ1_ARATH Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1 Back     alignment and function desciption
 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/496 (70%), Positives = 398/496 (80%), Gaps = 29/496 (5%)

Query: 1   MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLR 60
           M GK +KTNC+SASHKLFKDKAK RVDDLQG  LDLQFARKESR  DV+LLEEQV+QMLR
Sbjct: 1   MTGKRSKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLR 60

Query: 61  EWKAELHEPSPASSLQQDGSLG-FSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVA 119
           EWK+EL+EPSPASSLQQ G+LG FSSDI RLLQLC+EEDDATS L APKPEP DQ L   
Sbjct: 61  EWKSELNEPSPASSLQQGGTLGSFSSDICRLLQLCDEEDDATSKLAAPKPEPADQNLEAG 120

Query: 120 DTAVYH------EGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHH-FDLHQEFE 172
             AV+       +G+ +H  PLVD CK+ S      A NN +G+  L+YH  +DL QEFE
Sbjct: 121 KAAVFQRGYNLVQGKSEHGLPLVDNCKDLSL----AAGNNFDGTAPLEYHQQYDLQQEFE 176

Query: 173 QNFYAGYN-VSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYC 231
            NF  G+N   ++   +    IS ++P ICPPPSAFLGPKCALWDCPRPAQG DW+QDYC
Sbjct: 177 PNFNGGFNNCPSYGVVEGPIHISNFIPTICPPPSAFLGPKCALWDCPRPAQGFDWFQDYC 236

Query: 232 SGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPW 291
           S FHAALAF+EGPPGM PV+RPGGIGLKDGLLFAALSA+A GKDVGIPECEGAATAKSPW
Sbjct: 237 SSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 296

Query: 292 NAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGG 351
           NAPELFDL+VLE ET+REWLFFDKPRRAFESGNRKQRSLPDY+GRGWHESRKQ+M EFGG
Sbjct: 297 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGG 356

Query: 352 LKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQK 411
           LKRSYYMDPQPL+HFEWHLYEYEINKCDACALYRLELKLVDGKK++KGK++NDSVADLQK
Sbjct: 357 LKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQK 416

Query: 412 QMGRLTAEFPSD---------NKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGP 462
           QMGRLTAEFP +         NKR +KGR KV+ K   G       NV  +  +  DYG 
Sbjct: 417 QMGRLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATG-------NVQNTVEQANDYGV 469

Query: 463 TGQFDYLIENLSEYYL 478
             +F+YL+ NLS+YY+
Sbjct: 470 GEEFNYLVGNLSDYYI 485




Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SLB9|VOZ2_ARATH Transcription factor VOZ2 OS=Arabidopsis thaliana GN=VOZ2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query479
255563002484 conserved hypothetical protein [Ricinus 0.993 0.983 0.786 0.0
224079155491 predicted protein [Populus trichocarpa] 0.995 0.971 0.790 0.0
224116276489 predicted protein [Populus trichocarpa] 0.993 0.973 0.788 0.0
356548650478 PREDICTED: uncharacterized protein LOC10 0.991 0.993 0.773 0.0
356521424477 PREDICTED: uncharacterized protein LOC10 0.989 0.993 0.777 0.0
295841593483 MdVOZ1 [Malus x domestica] 0.989 0.981 0.783 0.0
449433788483 PREDICTED: transcription factor VOZ1-lik 0.993 0.985 0.775 0.0
225443564485 PREDICTED: uncharacterized protein LOC10 0.995 0.983 0.770 0.0
297740447484 unnamed protein product [Vitis vinifera] 0.993 0.983 0.769 0.0
297845800486 hypothetical protein ARALYDRAFT_473072 [ 0.974 0.960 0.711 0.0
>gi|255563002|ref|XP_002522505.1| conserved hypothetical protein [Ricinus communis] gi|223538196|gb|EEF39805.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/486 (78%), Positives = 417/486 (85%), Gaps = 10/486 (2%)

Query: 2   VGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLRE 61
           +GKG+K NCKSASHKLFKDKAK RVDDLQG F+DLQFARKESR+VDV++LEEQVHQMLRE
Sbjct: 1   MGKGSKINCKSASHKLFKDKAKNRVDDLQGMFMDLQFARKESRSVDVAVLEEQVHQMLRE 60

Query: 62  WKAELHEPSPASSLQQDGSLG-FSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVAD 120
           WKAEL+EPSPASSLQ   SLG FSSDI RLLQLCEEEDDATS L APKPEPND  L + +
Sbjct: 61  WKAELNEPSPASSLQHGASLGSFSSDICRLLQLCEEEDDATSALAAPKPEPNDHSLQIGN 120

Query: 121 TAVYHE------GEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQN 174
             V+ E      G+Q HSFP VDQCK S SGVH   +NNLEG   L++HHFDL Q +E N
Sbjct: 121 NVVFQEEFGVNQGQQNHSFPFVDQCKESPSGVHGMVVNNLEGGAQLEFHHFDLSQNYESN 180

Query: 175 FYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQG-VDWYQDYCSG 233
           FYA +N ++ C ED + Q+SGYLP ICPPPSAFLGPKCALWDCPRPAQG +DW QDYCS 
Sbjct: 181 FYADFNSTDLCAEDGVPQVSGYLPSICPPPSAFLGPKCALWDCPRPAQGGLDWCQDYCSS 240

Query: 234 FHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNA 293
           FH ALA +EGPPGM PVLRPGGIGLKDGLLFAALSA+AQGKDVGIPECEGAATAKSPWNA
Sbjct: 241 FHHALALNEGPPGMSPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNA 300

Query: 294 PELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLK 353
           PELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLK
Sbjct: 301 PELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLK 360

Query: 354 RSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQKQM 413
           RSYYMDPQPLN FEWHLYEYEINKCDACALYRLELK VDGKK AKGK+ N+SVADLQKQM
Sbjct: 361 RSYYMDPQPLNTFEWHLYEYEINKCDACALYRLELKAVDGKKGAKGKITNESVADLQKQM 420

Query: 414 GRLTAEFPSDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGPTGQFDYLIENL 473
           GRLTAEFPSDNKR VKGR KV+ K GV GN+Y  +N V  TNE +DY   G ++YL++NL
Sbjct: 421 GRLTAEFPSDNKRSVKGRTKVSVKVGV-GNVYSTTNRVVPTNETYDY-ELGPYNYLVDNL 478

Query: 474 SEYYLT 479
            +YY+T
Sbjct: 479 GDYYVT 484




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079155|ref|XP_002305772.1| predicted protein [Populus trichocarpa] gi|222848736|gb|EEE86283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224116276|ref|XP_002331942.1| predicted protein [Populus trichocarpa] gi|222874719|gb|EEF11850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548650|ref|XP_003542713.1| PREDICTED: uncharacterized protein LOC100806521 [Glycine max] Back     alignment and taxonomy information
>gi|356521424|ref|XP_003529356.1| PREDICTED: uncharacterized protein LOC100798565 [Glycine max] Back     alignment and taxonomy information
>gi|295841593|dbj|BAJ07177.1| MdVOZ1 [Malus x domestica] Back     alignment and taxonomy information
>gi|449433788|ref|XP_004134679.1| PREDICTED: transcription factor VOZ1-like [Cucumis sativus] gi|449479263|ref|XP_004155552.1| PREDICTED: transcription factor VOZ1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225443564|ref|XP_002273268.1| PREDICTED: uncharacterized protein LOC100243518 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740447|emb|CBI30629.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297845800|ref|XP_002890781.1| hypothetical protein ARALYDRAFT_473072 [Arabidopsis lyrata subsp. lyrata] gi|297336623|gb|EFH67040.1| hypothetical protein ARALYDRAFT_473072 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query479
TAIR|locus:2018738486 VOZ1 "AT1G28520" [Arabidopsis 0.974 0.960 0.715 1e-187
TAIR|locus:2053786450 VOZ2 "AT2G42400" [Arabidopsis 0.770 0.82 0.507 2.5e-90
TAIR|locus:2018738 VOZ1 "AT1G28520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1820 (645.7 bits), Expect = 1.0e-187, P = 1.0e-187
 Identities = 355/496 (71%), Positives = 399/496 (80%)

Query:     1 MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLR 60
             M GK +KTNC+SASHKLFKDKAK RVDDLQG  LDLQFARKESR  DV+LLEEQV+QMLR
Sbjct:     1 MTGKRSKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLR 60

Query:    61 EWKAELHEPSPASSLQQDGSLG-FSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVA 119
             EWK+EL+EPSPASSLQQ G+LG FSSDI RLLQLC+EEDDATS L APKPEP DQ L   
Sbjct:    61 EWKSELNEPSPASSLQQGGTLGSFSSDICRLLQLCDEEDDATSKLAAPKPEPADQNLEAG 120

Query:   120 DTAVYH------EGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHH-FDLHQEFE 172
               AV+       +G+ +H  PLVD CK+ S      A NN +G+  L+YH  +DL QEFE
Sbjct:   121 KAAVFQRGYNLVQGKSEHGLPLVDNCKDLSLA----AGNNFDGTAPLEYHQQYDLQQEFE 176

Query:   173 QNFYAGYNVSNFCGE-DAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYC 231
              NF  G+N     G  +    IS ++P ICPPPSAFLGPKCALWDCPRPAQG DW+QDYC
Sbjct:   177 PNFNGGFNNCPSYGVVEGPIHISNFIPTICPPPSAFLGPKCALWDCPRPAQGFDWFQDYC 236

Query:   232 SGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPW 291
             S FHAALAF+EGPPGM PV+RPGGIGLKDGLLFAALSA+A GKDVGIPECEGAATAKSPW
Sbjct:   237 SSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 296

Query:   292 NAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGG 351
             NAPELFDL+VLE ET+REWLFFDKPRRAFESGNRKQRSLPDY+GRGWHESRKQ+M EFGG
Sbjct:   297 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGG 356

Query:   352 LKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQK 411
             LKRSYYMDPQPL+HFEWHLYEYEINKCDACALYRLELKLVDGKK++KGK++NDSVADLQK
Sbjct:   357 LKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQK 416

Query:   412 QMGRLTAEFP---------SDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGP 462
             QMGRLTAEFP         ++NKR +KGR KV+ K   G N+    N V   N   DYG 
Sbjct:   417 QMGRLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATG-NV---QNTVEQAN---DYGV 469

Query:   463 TGQFDYLIENLSEYYL 478
               +F+YL+ NLS+YY+
Sbjct:   470 GEEFNYLVGNLSDYYI 485




GO:0005575 "cellular_component" evidence=ND
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0009610 "response to symbiotic fungus" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
GO:0048574 "long-day photoperiodism, flowering" evidence=IMP
GO:0048578 "positive regulation of long-day photoperiodism, flowering" evidence=IMP
TAIR|locus:2053786 VOZ2 "AT2G42400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SGQ0VOZ1_ARATHNo assigned EC number0.70960.97490.9609yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.01870013
hypothetical protein (489 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 479
PF02365129 NAM: No apical meristem (NAM) protein; InterPro: I 94.57
cd0878090 Death_TRADD Death Domain of Tumor Necrosis Factor 91.2
cd0831380 Death_TNFR1 Death domain of Tumor Necrosis Factor 87.38
cd0831983 Death_RAIDD Death domain of RIP-associated ICH-1 h 85.13
>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) [] Back     alignment and domain information
Probab=94.57  E-value=0.0017  Score=54.55  Aligned_cols=100  Identities=25%  Similarity=0.608  Sum_probs=54.2

Q ss_pred             HHHHhhhcCCccC----CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCCCCchhh
Q 011681          265 AALSARAQGKDVG----IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHE  340 (479)
Q Consensus       265 aAL~Ak~qgk~VG----iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~gRGWhE  340 (479)
                      .-|..|+.|...-    |++|  -.-+..||+-|..++.    ++  ++|+||=+.++....|+|+.|.-.   |=-||.
T Consensus        17 ~yL~~k~~g~~~~~~~~i~~~--Diy~~~P~~L~~~~~~----~~--~~~yFF~~~~~~~~~~~r~~R~~~---~G~Wk~   85 (129)
T PF02365_consen   17 HYLRPKILGEPLPCEDVIHDV--DIYSAHPWELPAKFKG----GD--EEWYFFSPRKKKYPNGGRPNRVTG---GGYWKS   85 (129)
T ss_dssp             CTHHHHHTT-HHCS-CHSEE----GGGS-GGGCHHHSSS-----S--SEEEEEEE----------S-EEET---TEEEEE
T ss_pred             HHHHHHhcCCCCCcccceeec--ccCccChHHhhhhccC----CC--ceEEEEEecccccCCccccccccc---ceEEee
Confidence            4577777776521    4445  5667799988853322    22  399999999999999999999755   444997


Q ss_pred             hHH--HHHH---HhcCcccc--cccCCCC-CCCcceeeeEEee
Q 011681          341 SRK--QVMN---EFGGLKRS--YYMDPQP-LNHFEWHLYEYEI  375 (479)
Q Consensus       341 SRK--qvMk---e~gGlkrS--YYMDPQP-~~~~eWHlyEYei  375 (479)
                      +.+  .|+.   ..-|.||+  ||.-.++ ...-.|-|.||.|
T Consensus        86 ~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L  128 (129)
T PF02365_consen   86 TGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSL  128 (129)
T ss_dssp             ECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE
T ss_pred             cccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEe
Confidence            765  3433   24456664  6643333 3366899999987



NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein Back     alignment and domain information
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1 Back     alignment and domain information
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query479
1ut7_A171 No apical meristem protein; transcription regulati 95.86
3ulx_A174 Stress-induced transcription factor NAC1; NAC fami 91.33
1ich_A112 TNF-1, tumor necrosis factor receptor-1; death dom 82.16
3ezq_A115 Tumor necrosis factor receptor superfamily member; 80.96
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Back     alignment and structure
Probab=95.86  E-value=0.0022  Score=57.17  Aligned_cols=124  Identities=27%  Similarity=0.509  Sum_probs=76.6

Q ss_pred             CchhhHH-HHHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011681          259 KDGLLFA-ALSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS  334 (479)
Q Consensus       259 KDg~LFa-AL~Ak~qgk~VG---iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~  334 (479)
                      .|-=|.. -|..|+.|...-   |+++.  .-...||+=|+..   . .|+  +||+||-.-.|.+..|.|..|.-.   
T Consensus        26 TDeELv~~YL~~K~~g~~~~~~~I~e~D--iy~~~Pw~Lp~~~---~-~g~--~ewyFFs~r~~k~~~g~R~~R~t~---   94 (171)
T 1ut7_A           26 TDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKA---L-FGE--KEWYFFSPRDRKYPNGSRPNRVAG---   94 (171)
T ss_dssp             CHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHS---S-SCS--SEEEEEEECCC-------CCEEET---
T ss_pred             ChHHHHHHHHHHHhcCCCCCCCeEeecc--cccCChhHhhchh---h-cCC--ccEEEEeccccccCCCCcccccCC---
Confidence            4555665 488999998765   44443  4567899877753   2 244  799999988889999999999741   


Q ss_pred             CCchhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeeEEeeccc---------ccceeeeeeeeeccC
Q 011681          335 GRGWHESRK--QVMN--EFGGLKRS--YYMDPQPLN-HFEWHLYEYEINKC---------DACALYRLELKLVDG  393 (479)
Q Consensus       335 gRGWhESRK--qvMk--e~gGlkrS--YYMDPQP~~-~~eWHlyEYein~~---------dacALYRLElK~~d~  393 (479)
                      +==||-.-+  .|..  ..-|.|++  ||..-.|.+ .-.|-|.||.|...         +...|+|+-.|....
T Consensus        95 ~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~  169 (171)
T 1ut7_A           95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA  169 (171)
T ss_dssp             TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred             CCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence            223775432  2221  23366764  687655544 57899999999754         578888887776543



>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1 Back     alignment and structure
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2 Back     alignment and structure
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query479
d1ut7a_166 No apical meristem (NAM, ANAC) {Mouse-ear cress (A 93.04
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.04  E-value=0.0056  Score=51.17  Aligned_cols=118  Identities=25%  Similarity=0.527  Sum_probs=67.5

Q ss_pred             CchhhHHH-HHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011681          259 KDGLLFAA-LSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS  334 (479)
Q Consensus       259 KDg~LFaA-L~Ak~qgk~VG---iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~  334 (479)
                      .|-=|..- |.-|+.|...-   |++|.  .....||.-|+.+..    |  -.||+||=.=.+...+|.|+.|.-.   
T Consensus        26 TDeELv~~YL~~Ki~g~~l~~~~I~~~D--vy~~~Pw~Lp~~~~~----~--~~~wyFft~~~~k~~~g~r~~R~~g---   94 (166)
T d1ut7a_          26 TDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKALF----G--EKEWYFFSPRDRKYPNGSRPNRVAG---   94 (166)
T ss_dssp             CHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHSSS----C--SSEEEEEEECCC-------CCEEET---
T ss_pred             CcHHHHHHHHHHHHcCCCCCcccceecc--CCcCChhhccchhcc----C--cceEEEEeeeccccCCCCccccccC---
Confidence            56667764 88888886542   55553  446789987765422    2  3579999654566778888888642   


Q ss_pred             CCchhhhHH-HHHHH---hcCcccc--cccCCCCCCC-cceeeeEEeecccc---------cceeeeee
Q 011681          335 GRGWHESRK-QVMNE---FGGLKRS--YYMDPQPLNH-FEWHLYEYEINKCD---------ACALYRLE  387 (479)
Q Consensus       335 gRGWhESRK-qvMke---~gGlkrS--YYMDPQP~~~-~eWHlyEYein~~d---------acALYRLE  387 (479)
                      |--||-.-+ .++..   --|.||+  ||.--+|.+. -.|.|.||.|.+..         .++|+|+=
T Consensus        95 ~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~  163 (166)
T d1ut7a_          95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY  163 (166)
T ss_dssp             TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred             CCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEE
Confidence            224775432 12211   1255665  4765444443 56999999997653         36777763