Citrus Sinensis ID: 011681
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| 255563002 | 484 | conserved hypothetical protein [Ricinus | 0.993 | 0.983 | 0.786 | 0.0 | |
| 224079155 | 491 | predicted protein [Populus trichocarpa] | 0.995 | 0.971 | 0.790 | 0.0 | |
| 224116276 | 489 | predicted protein [Populus trichocarpa] | 0.993 | 0.973 | 0.788 | 0.0 | |
| 356548650 | 478 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.993 | 0.773 | 0.0 | |
| 356521424 | 477 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.993 | 0.777 | 0.0 | |
| 295841593 | 483 | MdVOZ1 [Malus x domestica] | 0.989 | 0.981 | 0.783 | 0.0 | |
| 449433788 | 483 | PREDICTED: transcription factor VOZ1-lik | 0.993 | 0.985 | 0.775 | 0.0 | |
| 225443564 | 485 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.983 | 0.770 | 0.0 | |
| 297740447 | 484 | unnamed protein product [Vitis vinifera] | 0.993 | 0.983 | 0.769 | 0.0 | |
| 297845800 | 486 | hypothetical protein ARALYDRAFT_473072 [ | 0.974 | 0.960 | 0.711 | 0.0 |
| >gi|255563002|ref|XP_002522505.1| conserved hypothetical protein [Ricinus communis] gi|223538196|gb|EEF39805.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/486 (78%), Positives = 417/486 (85%), Gaps = 10/486 (2%)
Query: 2 VGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLRE 61
+GKG+K NCKSASHKLFKDKAK RVDDLQG F+DLQFARKESR+VDV++LEEQVHQMLRE
Sbjct: 1 MGKGSKINCKSASHKLFKDKAKNRVDDLQGMFMDLQFARKESRSVDVAVLEEQVHQMLRE 60
Query: 62 WKAELHEPSPASSLQQDGSLG-FSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVAD 120
WKAEL+EPSPASSLQ SLG FSSDI RLLQLCEEEDDATS L APKPEPND L + +
Sbjct: 61 WKAELNEPSPASSLQHGASLGSFSSDICRLLQLCEEEDDATSALAAPKPEPNDHSLQIGN 120
Query: 121 TAVYHE------GEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDLHQEFEQN 174
V+ E G+Q HSFP VDQCK S SGVH +NNLEG L++HHFDL Q +E N
Sbjct: 121 NVVFQEEFGVNQGQQNHSFPFVDQCKESPSGVHGMVVNNLEGGAQLEFHHFDLSQNYESN 180
Query: 175 FYAGYNVSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQG-VDWYQDYCSG 233
FYA +N ++ C ED + Q+SGYLP ICPPPSAFLGPKCALWDCPRPAQG +DW QDYCS
Sbjct: 181 FYADFNSTDLCAEDGVPQVSGYLPSICPPPSAFLGPKCALWDCPRPAQGGLDWCQDYCSS 240
Query: 234 FHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNA 293
FH ALA +EGPPGM PVLRPGGIGLKDGLLFAALSA+AQGKDVGIPECEGAATAKSPWNA
Sbjct: 241 FHHALALNEGPPGMSPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNA 300
Query: 294 PELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLK 353
PELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLK
Sbjct: 301 PELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLK 360
Query: 354 RSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQKQM 413
RSYYMDPQPLN FEWHLYEYEINKCDACALYRLELK VDGKK AKGK+ N+SVADLQKQM
Sbjct: 361 RSYYMDPQPLNTFEWHLYEYEINKCDACALYRLELKAVDGKKGAKGKITNESVADLQKQM 420
Query: 414 GRLTAEFPSDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGPTGQFDYLIENL 473
GRLTAEFPSDNKR VKGR KV+ K GV GN+Y +N V TNE +DY G ++YL++NL
Sbjct: 421 GRLTAEFPSDNKRSVKGRTKVSVKVGV-GNVYSTTNRVVPTNETYDY-ELGPYNYLVDNL 478
Query: 474 SEYYLT 479
+YY+T
Sbjct: 479 GDYYVT 484
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079155|ref|XP_002305772.1| predicted protein [Populus trichocarpa] gi|222848736|gb|EEE86283.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224116276|ref|XP_002331942.1| predicted protein [Populus trichocarpa] gi|222874719|gb|EEF11850.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356548650|ref|XP_003542713.1| PREDICTED: uncharacterized protein LOC100806521 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356521424|ref|XP_003529356.1| PREDICTED: uncharacterized protein LOC100798565 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|295841593|dbj|BAJ07177.1| MdVOZ1 [Malus x domestica] | Back alignment and taxonomy information |
|---|
| >gi|449433788|ref|XP_004134679.1| PREDICTED: transcription factor VOZ1-like [Cucumis sativus] gi|449479263|ref|XP_004155552.1| PREDICTED: transcription factor VOZ1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|225443564|ref|XP_002273268.1| PREDICTED: uncharacterized protein LOC100243518 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297740447|emb|CBI30629.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297845800|ref|XP_002890781.1| hypothetical protein ARALYDRAFT_473072 [Arabidopsis lyrata subsp. lyrata] gi|297336623|gb|EFH67040.1| hypothetical protein ARALYDRAFT_473072 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| TAIR|locus:2018738 | 486 | VOZ1 "AT1G28520" [Arabidopsis | 0.974 | 0.960 | 0.715 | 1e-187 | |
| TAIR|locus:2053786 | 450 | VOZ2 "AT2G42400" [Arabidopsis | 0.770 | 0.82 | 0.507 | 2.5e-90 |
| TAIR|locus:2018738 VOZ1 "AT1G28520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1820 (645.7 bits), Expect = 1.0e-187, P = 1.0e-187
Identities = 355/496 (71%), Positives = 399/496 (80%)
Query: 1 MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLR 60
M GK +KTNC+SASHKLFKDKAK RVDDLQG LDLQFARKESR DV+LLEEQV+QMLR
Sbjct: 1 MTGKRSKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLR 60
Query: 61 EWKAELHEPSPASSLQQDGSLG-FSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVA 119
EWK+EL+EPSPASSLQQ G+LG FSSDI RLLQLC+EEDDATS L APKPEP DQ L
Sbjct: 61 EWKSELNEPSPASSLQQGGTLGSFSSDICRLLQLCDEEDDATSKLAAPKPEPADQNLEAG 120
Query: 120 DTAVYH------EGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHH-FDLHQEFE 172
AV+ +G+ +H PLVD CK+ S A NN +G+ L+YH +DL QEFE
Sbjct: 121 KAAVFQRGYNLVQGKSEHGLPLVDNCKDLSLA----AGNNFDGTAPLEYHQQYDLQQEFE 176
Query: 173 QNFYAGYNVSNFCGE-DAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYC 231
NF G+N G + IS ++P ICPPPSAFLGPKCALWDCPRPAQG DW+QDYC
Sbjct: 177 PNFNGGFNNCPSYGVVEGPIHISNFIPTICPPPSAFLGPKCALWDCPRPAQGFDWFQDYC 236
Query: 232 SGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPW 291
S FHAALAF+EGPPGM PV+RPGGIGLKDGLLFAALSA+A GKDVGIPECEGAATAKSPW
Sbjct: 237 SSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 296
Query: 292 NAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGG 351
NAPELFDL+VLE ET+REWLFFDKPRRAFESGNRKQRSLPDY+GRGWHESRKQ+M EFGG
Sbjct: 297 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGG 356
Query: 352 LKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQK 411
LKRSYYMDPQPL+HFEWHLYEYEINKCDACALYRLELKLVDGKK++KGK++NDSVADLQK
Sbjct: 357 LKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQK 416
Query: 412 QMGRLTAEFP---------SDNKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGP 462
QMGRLTAEFP ++NKR +KGR KV+ K G N+ N V N DYG
Sbjct: 417 QMGRLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATG-NV---QNTVEQAN---DYGV 469
Query: 463 TGQFDYLIENLSEYYL 478
+F+YL+ NLS+YY+
Sbjct: 470 GEEFNYLVGNLSDYYI 485
|
|
| TAIR|locus:2053786 VOZ2 "AT2G42400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.01870013 | hypothetical protein (489 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| PF02365 | 129 | NAM: No apical meristem (NAM) protein; InterPro: I | 94.57 | |
| cd08780 | 90 | Death_TRADD Death Domain of Tumor Necrosis Factor | 91.2 | |
| cd08313 | 80 | Death_TNFR1 Death domain of Tumor Necrosis Factor | 87.38 | |
| cd08319 | 83 | Death_RAIDD Death domain of RIP-associated ICH-1 h | 85.13 |
| >PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) [] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.0017 Score=54.55 Aligned_cols=100 Identities=25% Similarity=0.608 Sum_probs=54.2
Q ss_pred HHHHhhhcCCccC----CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCCCCchhh
Q 011681 265 AALSARAQGKDVG----IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHE 340 (479)
Q Consensus 265 aAL~Ak~qgk~VG----iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~gRGWhE 340 (479)
.-|..|+.|...- |++| -.-+..||+-|..++. ++ ++|+||=+.++....|+|+.|.-. |=-||.
T Consensus 17 ~yL~~k~~g~~~~~~~~i~~~--Diy~~~P~~L~~~~~~----~~--~~~yFF~~~~~~~~~~~r~~R~~~---~G~Wk~ 85 (129)
T PF02365_consen 17 HYLRPKILGEPLPCEDVIHDV--DIYSAHPWELPAKFKG----GD--EEWYFFSPRKKKYPNGGRPNRVTG---GGYWKS 85 (129)
T ss_dssp CTHHHHHTT-HHCS-CHSEE----GGGS-GGGCHHHSSS-----S--SEEEEEEE----------S-EEET---TEEEEE
T ss_pred HHHHHHhcCCCCCcccceeec--ccCccChHHhhhhccC----CC--ceEEEEEecccccCCccccccccc---ceEEee
Confidence 4577777776521 4445 5667799988853322 22 399999999999999999999755 444997
Q ss_pred hHH--HHHH---HhcCcccc--cccCCCC-CCCcceeeeEEee
Q 011681 341 SRK--QVMN---EFGGLKRS--YYMDPQP-LNHFEWHLYEYEI 375 (479)
Q Consensus 341 SRK--qvMk---e~gGlkrS--YYMDPQP-~~~~eWHlyEYei 375 (479)
+.+ .|+. ..-|.||+ ||.-.++ ...-.|-|.||.|
T Consensus 86 ~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L 128 (129)
T PF02365_consen 86 TGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSL 128 (129)
T ss_dssp ECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE
T ss_pred cccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEe
Confidence 765 3433 24456664 6643333 3366899999987
|
NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A. |
| >cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein | Back alignment and domain information |
|---|
| >cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1 | Back alignment and domain information |
|---|
| >cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| 1ut7_A | 171 | No apical meristem protein; transcription regulati | 95.86 | |
| 3ulx_A | 174 | Stress-induced transcription factor NAC1; NAC fami | 91.33 | |
| 1ich_A | 112 | TNF-1, tumor necrosis factor receptor-1; death dom | 82.16 | |
| 3ezq_A | 115 | Tumor necrosis factor receptor superfamily member; | 80.96 |
| >1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0022 Score=57.17 Aligned_cols=124 Identities=27% Similarity=0.509 Sum_probs=76.6
Q ss_pred CchhhHH-HHHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011681 259 KDGLLFA-ALSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS 334 (479)
Q Consensus 259 KDg~LFa-AL~Ak~qgk~VG---iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~ 334 (479)
.|-=|.. -|..|+.|...- |+++. .-...||+=|+.. . .|+ +||+||-.-.|.+..|.|..|.-.
T Consensus 26 TDeELv~~YL~~K~~g~~~~~~~I~e~D--iy~~~Pw~Lp~~~---~-~g~--~ewyFFs~r~~k~~~g~R~~R~t~--- 94 (171)
T 1ut7_A 26 TDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKA---L-FGE--KEWYFFSPRDRKYPNGSRPNRVAG--- 94 (171)
T ss_dssp CHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHS---S-SCS--SEEEEEEECCC-------CCEEET---
T ss_pred ChHHHHHHHHHHHhcCCCCCCCeEeecc--cccCChhHhhchh---h-cCC--ccEEEEeccccccCCCCcccccCC---
Confidence 4555665 488999998765 44443 4567899877753 2 244 799999988889999999999741
Q ss_pred CCchhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeeEEeeccc---------ccceeeeeeeeeccC
Q 011681 335 GRGWHESRK--QVMN--EFGGLKRS--YYMDPQPLN-HFEWHLYEYEINKC---------DACALYRLELKLVDG 393 (479)
Q Consensus 335 gRGWhESRK--qvMk--e~gGlkrS--YYMDPQP~~-~~eWHlyEYein~~---------dacALYRLElK~~d~ 393 (479)
+==||-.-+ .|.. ..-|.|++ ||..-.|.+ .-.|-|.||.|... +...|+|+-.|....
T Consensus 95 ~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred CCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 223775432 2221 23366764 687655544 57899999999754 578888887776543
|
| >3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1 | Back alignment and structure |
|---|
| >1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2 | Back alignment and structure |
|---|
| >3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| d1ut7a_ | 166 | No apical meristem (NAM, ANAC) {Mouse-ear cress (A | 93.04 |
| >d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: NAC domain superfamily: NAC domain family: NAC domain domain: No apical meristem (NAM, ANAC) species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.04 E-value=0.0056 Score=51.17 Aligned_cols=118 Identities=25% Similarity=0.527 Sum_probs=67.5
Q ss_pred CchhhHHH-HHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011681 259 KDGLLFAA-LSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS 334 (479)
Q Consensus 259 KDg~LFaA-L~Ak~qgk~VG---iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~ 334 (479)
.|-=|..- |.-|+.|...- |++|. .....||.-|+.+.. | -.||+||=.=.+...+|.|+.|.-.
T Consensus 26 TDeELv~~YL~~Ki~g~~l~~~~I~~~D--vy~~~Pw~Lp~~~~~----~--~~~wyFft~~~~k~~~g~r~~R~~g--- 94 (166)
T d1ut7a_ 26 TDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKALF----G--EKEWYFFSPRDRKYPNGSRPNRVAG--- 94 (166)
T ss_dssp CHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHSSS----C--SSEEEEEEECCC-------CCEEET---
T ss_pred CcHHHHHHHHHHHHcCCCCCcccceecc--CCcCChhhccchhcc----C--cceEEEEeeeccccCCCCccccccC---
Confidence 56667764 88888886542 55553 446789987765422 2 3579999654566778888888642
Q ss_pred CCchhhhHH-HHHHH---hcCcccc--cccCCCCCCC-cceeeeEEeecccc---------cceeeeee
Q 011681 335 GRGWHESRK-QVMNE---FGGLKRS--YYMDPQPLNH-FEWHLYEYEINKCD---------ACALYRLE 387 (479)
Q Consensus 335 gRGWhESRK-qvMke---~gGlkrS--YYMDPQP~~~-~eWHlyEYein~~d---------acALYRLE 387 (479)
|--||-.-+ .++.. --|.||+ ||.--+|.+. -.|.|.||.|.+.. .++|+|+=
T Consensus 95 ~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~ 163 (166)
T d1ut7a_ 95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163 (166)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred CCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEE
Confidence 224775432 12211 1255665 4765444443 56999999997653 36777763
|