Citrus Sinensis ID: 011684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEcccccccccccEEEEEEcccccccccccEEEEEEEccEEEEEEccccEEEEEEEcccccccccccEEEEEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHcccccccccccccccEEEHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHcccccEEEEEEEEEccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEccccEEEcccccEEEEEEccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccEEEEccccEEEEEEcccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEcccccccccHcEEEEEEEccccccccccEEEEEEccEEEEEEccccccEEEEEEcccccEEEEcEEEEEEcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccccccEEEHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEccccHHHcHHHHHHccccccHHHHHHHHHHHHHHHcHHHcEEEccccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEccccEEEEEcEEEEEEEcccEEEcHHHHHHHHHHHHHHHHcHHHHcc
Coil and Loop (DISEMBL)
matlspflsktplsntptisfsssistplkwksitsfspsgssssrsrRRIFIVQSKIREIFMpalsstmteGKIVSWIKSEGDVLSKGESVVVvesdkadmdvetFYDGILAAIvvpegesapvgAAIGILAETEAEVAQAKAKAAsagaaapashpvtstpvpavsppepkkvaesapsgprktvaTPYAKKLLKQHKVdinsvvgtgpfgritpedvekaagiapsksvapsaapaalpkpapaaapaapllpgstvvpftTMQAAVSKNMIEslsvptfrvgyPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHpvvnasckdgksftyNANINIAVAVAINgglitpvlqdadkLDLYLLSQKWKELVEKARskqlqpheynsgtftlsnlgmfgvdrfdailppgqgaimavgaskptvvadadgffgvKSKMLVNVTADHRIIYGADLAAFLQTFSKIVenpesltl
Flexible Loop (DISEMBL)
matlspflsktplsntptisfsssistplkwksitsfspsgssssrsrrRIFIVQSKIREifmpalsstmteGKIVSWIksegdvlskGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKkvaesapsgprktVATPYAKKLlkqhkvdinsvvgtgpfgrITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKArskqlqpheynsGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIvenpesltl
Low Complexity Region (SEG)
MATLSPFLSKTPLsntptisfsssistpLKWKsitsfspsgssssrsrrrIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILaeteaevaqakakaasagaaapaSHpvtstpvpavsppepkkvaESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIapsksvapsaapaalpkpapaaapaapllpGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTallakaaamalVQHPVVNASCKDGKSFTYnaniniavavainGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL
Disordered region (IsUnstruct)
*************************************************RIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE**********************************************************KKLLKQHKVDINSVVGTGPFGR*******************************************STVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKA*******HEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIV********
Disordered Region (DISOPRED)
*******************************************************SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE*****************************************************PYAKKLLKQHKVDINSVVGTGPFGRITPEDVE*************************************TVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL
Disordered Region (DISEMBL)
MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSI**************RRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA************************************************TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA*************************APAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL
Disordered Region (DISPRO)
**************************TPLKWKSITSFSPS*************VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET******************************************************P**KK****HKVDINSVVGTGPFGRITPEDVEKAAGI**********************************VPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIxxxxxxxxxxxxxxxxxxxxxAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q1RJT3	418	Dihydrolipoyllysine-resid	yes	no	0.837	0.959	0.331	3e-59
Q5M729	539	Dihydrolipoyllysine-resid	no	no	0.851	0.756	0.356	1e-58
Q4ULG1	412	Dihydrolipoyllysine-resid	yes	no	0.824	0.958	0.332	3e-58
Q92HK7	412	Dihydrolipoyllysine-resid	yes	no	0.824	0.958	0.334	5e-58
O66119	440	Dihydrolipoyllysine-resid	yes	no	0.843	0.918	0.332	6e-57
Q8RWN9	539	Dihydrolipoyllysine-resid	no	no	0.862	0.766	0.360	3e-54
Q68WK6	404	Dihydrolipoyllysine-resid	yes	no	0.807	0.957	0.327	5e-54
Q9ZD20	408	Dihydrolipoyllysine-resid	yes	no	0.805	0.946	0.319	7e-54
P22439	501	Pyruvate dehydrogenase pr	yes	no	0.853	0.816	0.338	1e-52
Q19749	507	Dihydrolipoyllysine-resid	yes	no	0.841	0.794	0.342	4e-52

>sp|Q1RJT3|ODP2_RICBR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1

 Score =  229 bits (585), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 229/431 (53%), Gaps = 30/431 (6%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ MPALS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +G LA I++P+
Sbjct: 4   KLLMPALSPTMTEGNLARWLKKEGDKINPGEVIAEIETDKATMEVEAVDEGTLAKIIIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKK--VA 176
           G ++ PV + I +L E   E++  +   A   + +P    + S P   ++P   K+  + 
Sbjct: 64  GSQNVPVNSLIAVLIEEGEELSGIEEFIAKNNSNSPKKEEI-SKPAETIAPQNVKEENIT 122

Query: 177 ESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSA 236
            ++     K  A+P AK+L K   V I  + G+GP GRI  +DV           ++   
Sbjct: 123 TASDQNNIKVFASPLAKRLAKIQNVRIEEIKGSGPHGRIIKQDV-----------LSHKG 171

Query: 237 APAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD 295
              AL     +  P    L      P   ++  ++K ++ES  +VP F +      D L 
Sbjct: 172 GSKALSNKIVSRNPEEYRL-----APNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLL 226

Query: 296 ALYEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAV 348
            + E +       K   +++   +  A A AL + P  NAS  D     YN N++I+VAV
Sbjct: 227 DIREDINKSFGDDKSAKISVNDFIILAVAKALQEVPNANASWGDDAIRYYN-NVDISVAV 285

Query: 349 AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR 408
           AI  GL+TP++++AD+ ++  LS + K L++KAR  +L P E+  G FT+SNLGM+G+  
Sbjct: 286 AIENGLVTPIIRNADQKNIVDLSSEMKGLIKKARENKLTPEEFQGGGFTISNLGMYGIKN 345

Query: 409 FDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFS 468
           F+AI+ P Q  IM VG+S    +   D    + + M V ++ADHR++ GA  A FL  F 
Sbjct: 346 FNAIINPPQSCIMGVGSSSKRAIVKNDQ-ISIATIMDVTLSADHRVVDGAVGAEFLAAFK 404

Query: 469 KIVENPESLTL 479
           + +E+P  + L
Sbjct: 405 RFIESPALMLL 415

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Rickettsia bellii (strain RML369-C) (taxid: 336407)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2

>sp|Q5M729|OPD23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1

 Score =  227 bits (579), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 233/441 (52%), Gaps = 33/441 (7%)

Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +EI MP+LS TMTEG I  W+K EGD ++ GE +  VE+DKA +++E   +G LA IV  
Sbjct: 112 QEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYLAKIVKA 171

Query: 119 EG-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPA----------V 167
           EG +   VG  I I  E E ++ + K    S+ A A    P  + P PA           
Sbjct: 172 EGSKEIQVGEVIAITVEDEEDIGKFKDYTPSSTADA---APTKAEPTPAPPKEEKVKQPS 228

Query: 168 SPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIA 227
           SPPEPK    S P    +  A+P A+KL + + V ++ + GTGP GRI   D+++     
Sbjct: 229 SPPEPKASKPSTPPTGDRVFASPLARKLAEDNNVPLSDIEGTGPEGRIVKADIDEYLA-- 286

Query: 228 PSKSVAPSAAPAALPKPAPAAAPAAPLL-----PGSTVVPFTTMQAAVSKNMIES--LSV 280
                  S+   A  KP+ +    AP L     P S +   T  + A SK  I    L+V
Sbjct: 287 -------SSGKGATAKPSKSTDSKAPALDYVDIPHSQIRKVTASRLAFSKQTIPHYYLTV 339

Query: 281 PTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNA 340
            T       +   L++  E    K +++  L+ KAAA+AL + P  N+S  D     +  
Sbjct: 340 DTCVDKLMALRSQLNSFKEASGGKRISVNDLVVKAAALALRKVPQCNSSWTDDYIRQFK- 398

Query: 341 NINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSN 400
           N+NI VAV    GL  PV++DAD+  L  + ++ + L +KA+   L+P +Y  GTFT+SN
Sbjct: 399 NVNINVAVQTENGLYVPVVKDADRKGLSTIGEEVRLLAQKAKENSLKPEDYEGGTFTVSN 458

Query: 401 LGM-FGVDRFDAILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVNVTADHRIIYGA 458
           LG  FG+ +F A++ P Q AI+AVG+++  VV  +    F   S M V ++ DHR++ GA
Sbjct: 459 LGGPFGIKQFCAVVNPPQAAILAVGSAEKRVVPGNGPDQFNFASYMPVTLSCDHRVVDGA 518

Query: 459 DLAAFLQTFSKIVENPESLTL 479
             A +L+ F   +ENP+S+ L
Sbjct: 519 IGAEWLKAFKGYIENPKSMLL 539

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q4ULG1|ODP2_RICFE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhC PE=3 SV=1

 Score =  226 bits (576), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 225/424 (53%), Gaps = 29/424 (6%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MP LS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +GILA IV+P+
Sbjct: 4   KILMPVLSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
             ++ PV + I +L+E   E     A  A     +P+     + P P  +  + ++    
Sbjct: 64  NSQNVPVNSLIAVLSEEGEEKTDIDAFIAKNNNVSPSPKTDANLPKPHENIAKVEEQVAV 123

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
                 K  A+P AK+L K   + + SV G+GP GRI  +D+          S  PS   
Sbjct: 124 IKHDASKIFASPLAKRLAKMGNIRLESVKGSGPHGRIVKQDI---------LSYTPSTVH 174

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
             +    P             +VP   ++  ++K ++ES  +VP F +      D L  +
Sbjct: 175 NKIVSRNPEEY---------RLVPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDI 225

Query: 298 YEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
            E +       K   +++   +  A A AL + P  NAS  +  +  Y+ N++I+VAVAI
Sbjct: 226 REDINKSFSEDKSTRISVNDFIILAVAKALQELPNANASWGED-AIRYHNNVDISVAVAI 284

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             GL+TP++++A++ ++  LS++ KEL++KA+  +L P E+  G FT+SNLGM+G+  F+
Sbjct: 285 ENGLVTPIVKNANQKNIIELSREMKELIKKAKDNKLTPEEFQGGGFTISNLGMYGIKNFN 344

Query: 411 AILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKI 470
           AI+ P Q  IM VGAS    +   D    + + M V ++ADHR++ GA  A FL  F K 
Sbjct: 345 AIINPPQSCIMGVGASAKRAIVKNDQ-VTIATIMDVTLSADHRVVDGAVGAEFLAAFKKF 403

Query: 471 VENP 474
           +E+P
Sbjct: 404 IESP 407

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q92HK7|ODP2_RICCN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=pdhC PE=3 SV=1

 Score =  225 bits (574), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 224/424 (52%), Gaps = 29/424 (6%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +GILA IV+P+
Sbjct: 4   KILMPALSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
             ++ PV + I +L+E   E     A  A   + +P+     + P P  +    ++    
Sbjct: 64  NSQNVPVNSLIAVLSEEGEEKTDIDAFIAKNNSVSPSPKTDANLPKPHENIANVEEQVTV 123

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
                 +  A+P AK+L K   +   SV G+GP GRI  +D+          S  PS A 
Sbjct: 124 IKHDVSRIFASPLAKRLAKMRNIRFESVKGSGPHGRIVKQDI---------LSYTPSTAH 174

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
             +    P             +VP   ++  ++K ++ES  +VP F +      D L  +
Sbjct: 175 NKIVSRNPEEY---------RLVPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDI 225

Query: 298 YEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
            E +       K   +++   +  A A AL + P  NAS  +     YN N++I+VAVAI
Sbjct: 226 REDINKFFSEDKSTRISVNDFIILAVAKALQEVPNANASWGEDAIRYYN-NVDISVAVAI 284

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             GL+TP++++A++ ++  LS++ K L++KA+  +L P E+  G FT+SNLGM+G+  F+
Sbjct: 285 ENGLVTPIVKNANQKNILELSREMKALIKKAKDNKLTPEEFQGGGFTISNLGMYGIKNFN 344

Query: 411 AILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKI 470
           AI+ P Q  IM VGAS    +   D    + + M V ++ADHR++ GA  A FL  F K 
Sbjct: 345 AIINPPQSCIMGVGASAKRAIVKNDQ-ITIATIMDVTLSADHRVVDGAVGAEFLVAFKKF 403

Query: 471 VENP 474
           +E+P
Sbjct: 404 IESP 407

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O66119|ODP2_ZYMMO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2

 Score =  222 bits (565), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 234/442 (52%), Gaps = 38/442 (8%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E+ MPALS TMTEG +  W+  EGD +  G+ +  +E+DKA M+ ET   GI+A I+VPE
Sbjct: 4   EVKMPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPE 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAAS-----AGAAAPASHPVTSTPVPAVSPPEPK 173
           G E+  VG  I ++AE   +V+Q  A A+S     +  A  A      +   ++     K
Sbjct: 64  GSENIAVGQVIAVMAEAGEDVSQVAASASSQISEPSEKADVAQKETADSETISIDASLDK 123

Query: 174 KVAESAPSGPRKTV------------ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
            ++ +      + +            A+P AK+L K++ VD+  V G+GP GRI   D+E
Sbjct: 124 AISNAGYGNKTENMTASYQEKAGRIKASPLAKRLAKKNHVDLKQVNGSGPHGRIIKADIE 183

Query: 222 KAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSV 280
                A   S  PS +    P+ +       P       +  + M+  +++ + ES  ++
Sbjct: 184 AFIAEANQASSNPSVST---PEASGKITHDTP----HNSIKLSNMRRVIARRLTESKQNI 236

Query: 281 PTFRVGYPIITDALDALYEK------VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGK 334
           P   +   +  DAL  L  +      V+   +++  +L KA A+AL   P VN +  DG 
Sbjct: 237 PHIYLTVDVQMDALLKLRSELNESLAVQNIKISVNDMLIKAQALALKATPNVNVAF-DGD 295

Query: 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSG 394
                +  +I+VAV++ GGLITP+L+ AD   L  LS + KEL+ +AR  +LQP EY  G
Sbjct: 296 QMLQFSQADISVAVSVEGGLITPILKQADTKSLSALSVEMKELIARAREGRLQPQEYQGG 355

Query: 395 TFTLSNLGMFGVDRFDAILPPGQGAIMAVGAS--KPTVVADADGFFGVKSKMLVNVTADH 452
           T ++SN+GMFG+ +F+A++ P Q +I+A+G+   +P V+ DA     + +   +  + DH
Sbjct: 356 TSSISNMGMFGIKQFNAVINPPQASILAIGSGERRPWVIDDA---ITIATVATITGSFDH 412

Query: 453 RIIYGADLAAFLQTFSKIVENP 474
           R+I GAD AAF+  F  +VE P
Sbjct: 413 RVIDGADAAAFMSAFKHLVEKP 434

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2

 Score =  213 bits (541), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 230/436 (52%), Gaps = 23/436 (5%)

Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +EI MP+LS TMTEG I  W+K EGD ++ GE +  VE+DKA +++E   +G LA IV  
Sbjct: 112 QEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGFLAKIVKE 171

Query: 119 EG-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPA-------VSPP 170
           EG +   VG  I I  E E ++ + K    S+     A     +  +P         S P
Sbjct: 172 EGAKEIQVGEVIAITVEDEDDIQKFKDYTPSSDTGPAAPEAKPAPSLPKEEKVEKPASAP 231

Query: 171 EPK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPS 229
           E K     SAPS  R   A+P A+KL + + V ++S+ GTGP GRI   DVE       S
Sbjct: 232 EAKISKPSSAPSEDR-IFASPLARKLAEDNNVPLSSIKGTGPEGRIVKADVED---FLAS 287

Query: 230 KSVAPSAAPAALPKPAPAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIES--LSVPTFRV 285
            S   +A P+   K   +  PA     +P + +   T  + A SK  I    L+V T   
Sbjct: 288 GSKETTAKPS---KQVDSKVPALDYVDIPHTQIRKVTASRLAFSKQTIPHYYLTVDTCVD 344

Query: 286 GYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIA 345
               +   L++  E    K +++  L+ KAAA+AL + P  N+S  D     +  N+NI 
Sbjct: 345 KMMGLRSQLNSFQEASGGKRISVNDLVIKAAALALRKVPQCNSSWTDEYIRQFK-NVNIN 403

Query: 346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGM-F 404
           VAV    GL  PV++DADK  L  + ++ + L +KA+   L+P +Y  GTFT+SNLG  F
Sbjct: 404 VAVQTENGLYVPVVKDADKKGLSTIGEEVRFLAQKAKENSLKPEDYEGGTFTVSNLGGPF 463

Query: 405 GVDRFDAILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVNVTADHRIIYGADLAAF 463
           G+ +F A++ P Q AI+A+G+++  VV       + V S M V ++ DHR+I GA  A +
Sbjct: 464 GIKQFCAVINPPQAAILAIGSAEKRVVPGTGPDQYNVASYMSVTLSCDHRVIDGAIGAEW 523

Query: 464 LQTFSKIVENPESLTL 479
           L+ F   +E PES+ L
Sbjct: 524 LKAFKGYIETPESMLL 539

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q68WK6|ODP2_RICTY Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=pdhC PE=3 SV=1

 Score =  212 bits (539), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 139/424 (32%), Positives = 220/424 (51%), Gaps = 37/424 (8%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TM +G +  W+K EGD ++ GE +  +E+DKA M+VE+  +GILA I++P+
Sbjct: 4   KILMPALSPTMKDGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
             ++ PV + I +L+E     A   A  A   + + +      T        E     E 
Sbjct: 64  NSQNVPVNSLIAVLSEEGESTADIDAFIAKNNSVSLS----LKTDTTLKKANESITNVEV 119

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
                 K  A+P AK+L K   + + SV G+GP GRI  +D+          S +PS A 
Sbjct: 120 VKHDLSKIFASPLAKRLAKIRNIRLESVQGSGPHGRIVKQDI---------LSYSPSTAY 170

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
               +   +             VP   ++  ++K ++ES  +VP F +      D L  +
Sbjct: 171 NRDTEEYRS-------------VPNNNIRQIIAKRLLESKQTVPHFYLSIECNVDKLLDI 217

Query: 298 YEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
            E +       K   +++   +  A A AL + P  NAS  +     YN N++I+VAVAI
Sbjct: 218 REDINKSFSEDKLTKISVNDFIILAVAKALQEVPNANASWAEDAIRYYN-NVDISVAVAI 276

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             G++TP+++DA+K ++  LS + K L++KA+  +L P E+  G FT+SNLGM+G+  F+
Sbjct: 277 ENGIVTPIIKDANKKNIIELSHEMKILIKKAKDNKLTPVEFQGGGFTISNLGMYGIKNFN 336

Query: 411 AILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKI 470
           AI+   Q  IM VGAS    +   D    + + M V ++ADHR+I GA  A FL +F + 
Sbjct: 337 AIINTPQSCIMGVGASTKRAIVKNDQII-IATIMDVTLSADHRVIDGAVSAEFLASFKRF 395

Query: 471 VENP 474
           +E+P
Sbjct: 396 IEHP 399

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9ZD20|ODP2_RICPR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii (strain Madrid E) GN=pdhC PE=3 SV=1

 Score =  211 bits (538), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 220/429 (51%), Gaps = 43/429 (10%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TM EG +  W+K EGD ++ GE +  +E+DKA M+VE+  +GILA I++P+
Sbjct: 4   KILMPALSPTMREGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQ-----AKAKAASAGAAAPASHPVTSTPVPAVSPPEPK 173
             ++ PV + I +L+E   + A      A+  + S      A+   ++  +  V      
Sbjct: 64  NSQNVPVNSLIAVLSEEGEDKADIDSFIAQNNSVSLSLKTDATLKKSNDSITNV------ 117

Query: 174 KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVA 233
              E       K  A+P AK+L K   + + +V G+GP GRI  +D+        S  + 
Sbjct: 118 ---EGIKHDSNKIFASPLAKRLAKIGDIRLENVQGSGPHGRIVKQDILSYDSSTSSNKIV 174

Query: 234 PSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITD 292
                                      VP   ++  ++K ++ES  +VP F +      D
Sbjct: 175 YRDTEEYRS------------------VPNNNIRKIIAKRLLESKQTVPHFYLSIECNVD 216

Query: 293 ALDALYEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIA 345
            L  + E +       K   +++   +  A A AL + P  NAS  +     YN N++I+
Sbjct: 217 KLLDVREDINKSFSEDKVTKISVNDFIILAVAKALQEVPNANASWSEDAIRYYN-NVDIS 275

Query: 346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG 405
           VAVAI  G++TP+++DA+K ++  LS++ K L++KA+  +L P E+  G FT+SNLGM+G
Sbjct: 276 VAVAIENGIVTPIVKDANKKNIIELSREMKTLIKKAKDNKLTPIEFQGGGFTISNLGMYG 335

Query: 406 VDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQ 465
           +  F+AI+   Q  IM VGAS    +   D    + + M V ++ADHR+I GA  A FL 
Sbjct: 336 IKNFNAIINTPQSCIMGVGASTKRAIVKNDQII-IATIMDVTLSADHRVIDGAVSAEFLA 394

Query: 466 TFSKIVENP 474
           +F + +ENP
Sbjct: 395 SFKRFIENP 403

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P22439|ODPX_BOVIN Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3

 Score =  207 bits (528), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 239/452 (52%), Gaps = 43/452 (9%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV E
Sbjct: 58  KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVAE 117

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
           G ++  +G+ IG+L E E E  +        G   PA+ P  S P P+  P     V + 
Sbjct: 118 GSKNIRLGSLIGLLVE-EGEDWKHVEIPKDTGPPPPAAKP--SVPPPSAEPQIATPVKKE 174

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAP---- 234
            P G  +   +P A+ +L++H +D N    TGP G  T ED  K   +  +  +      
Sbjct: 175 HPPGKVQFRLSPAARNILEKHALDANQGTATGPRGIFTKEDALKLVQLKQTGKITEPRPT 234

Query: 235 --------------SAAPAALPKPA--PAAAPAAPLLPGS-TVVPFTTMQAAVSKNMIES 277
                         +AA A+ P+P   P + P  P + G+ T +P + ++  ++K + ES
Sbjct: 235 AALPTTPAAPLPPQAAATASYPRPMIPPVSTPGQPNVEGTFTEIPASNIRRVIAKRLTES 294

Query: 278 LSVPTFRVGYP--------IITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNAS 329
            S  T    Y         ++T   + + + +K   V++   + KAAA+ L Q P VNAS
Sbjct: 295 KS--TIPHAYATTDCDLGAVLTARQNLVRDDIK---VSVNDFIIKAAAVTLKQMPNVNAS 349

Query: 330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPH 389
             DG+      +I+I+VAVA + GLITPV++DA    L  ++   K L +KAR  +L P 
Sbjct: 350 W-DGEGAKQLPSIDISVAVATDRGLITPVIKDAAAKGLQEIADSVKALSKKARDGKLLPE 408

Query: 390 EYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPT--VVADADGFFGVKSKMLVN 447
           EY  G+F++SNLGMFG+D F A++ P Q  I+AVG  +P   +  D +G   ++ + L+ 
Sbjct: 409 EYQGGSFSISNLGMFGIDEFTAVINPPQACILAVGRFRPVLKLTQDEEGNAQLQQRQLIT 468

Query: 448 VT--ADHRIIYGADLAAFLQTFSKIVENPESL 477
           VT  +D R++       FL++F   +ENP  L
Sbjct: 469 VTMSSDSRVVDDELATRFLESFKANLENPLRL 500

Required for anchoring dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide transacetylase (E2) core of the pyruvate dehydrogenase complexes of eukaryotes. This specific binding is essential for a functional PDH complex.

Bos taurus (taxid: 9913)

>sp|Q19749|ODP2_CAEEL Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1

 Score =  206 bits (523), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 244/452 (53%), Gaps = 49/452 (10%)

Query: 57  KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116
           K   + +PALS TM  G +VSW K EGD LS+G+ +  +E+DKA M  ET  +G LA I+
Sbjct: 76  KHNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKIL 135

Query: 117 VPEG-ESAPVGAAIGILAETEAEVA---QAKAKAASAGAAAPASHPVTSTPVPAVS-PPE 171
           + EG +  P+G  + I+ + EA+VA     K   AS+G +APA+        PA S  P 
Sbjct: 136 IQEGSKDVPIGKLLCIIVDNEADVAAFKDFKDDGASSGGSAPAAEKAPEPAKPAASSQPS 195

Query: 172 PKKVAESAPSGPR----------KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
           P      APS P+          +  A+P+AKKL  ++ +D++ V G+GP GRI   D+ 
Sbjct: 196 PPAQMYQAPSVPKSAPIPHSSSGRVSASPFAKKLAAENGLDLSGVSGSGPGGRILASDLS 255

Query: 222 KAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLS-V 280
           +A    P+K    +   A   +               T +P + M+  ++K + ES S +
Sbjct: 256 QA----PAKGATSTTTQAVSGQ-------------DYTDIPLSNMRKTIAKRLTESKSTI 298

Query: 281 PTFRVGYPIITDALDALYEKVK---PKG-------VTMTALLAKAAAMALVQHPVVNASC 330
           P + +   I  D L  + EK+     KG       +++   + KA+A+A  + P  N+  
Sbjct: 299 PHYYLTSEIQLDTLLQVREKLNGLLAKGTSGQATKISINDFIIKASALACQRVPEANSYW 358

Query: 331 KDGKSFTY-NANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPH 389
            D  SF   N +++++VAV+   GLITP++ +A    L  ++ +  EL ++AR  +LQPH
Sbjct: 359 MD--SFIRENHHVDVSVAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPH 416

Query: 390 EYNSGTFTLSNLGMFG-VDRFDAILPPGQGAIMAVGASKPTVVAD-ADGFFGVKSKMLVN 447
           E+  GTFT+SNLGMFG V  F AI+ P Q  I+A+G +   +V D A+G+  +K+ M V 
Sbjct: 417 EFQGGTFTVSNLGMFGSVSDFTAIINPPQSCILAIGGASDKLVPDEAEGYKKIKT-MKVT 475

Query: 448 VTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           ++ DHR + GA  A +L+ F + +E P ++ L
Sbjct: 476 LSCDHRTVDGAVGAVWLRHFKEFLEKPHTMLL 507

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
449434630	487	PREDICTED: dihydrolipoyllysine-residue a	0.964	0.948	0.759	0.0
225423947	488	PREDICTED: dihydrolipoyllysine-residue a	0.979	0.961	0.747	0.0
15230922	480	2-oxoacid dehydrogenases acyltransferase	0.964	0.962	0.754	0.0
255576459	483	Dihydrolipoyllysine-residue acetyltransf	0.979	0.971	0.776	0.0
297814808	482	hypothetical protein ARALYDRAFT_904762 [	0.954	0.948	0.752	1e-180
9279589	432	dihydrolipoamide S-acetyltransferase [Ar	0.889	0.986	0.793	1e-178
224099359	467	predicted protein [Populus trichocarpa]	0.960	0.985	0.749	1e-178
224111700	435	predicted protein [Populus trichocarpa]	0.874	0.963	0.819	1e-177
356575530	472	PREDICTED: dihydrolipoyllysine-residue a	0.897	0.911	0.776	1e-175
356498274	461	PREDICTED: dihydrolipoyllysine-residue a	0.951	0.989	0.759	1e-175

>gi|449434630|ref|XP_004135099.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Cucumis sativus] gi|449523744|ref|XP_004168883.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Cucumis sativus]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/498 (75%), Positives = 407/498 (81%), Gaps = 36/498 (7%)

Query: 5   SPFLSKTPLSNTPT---ISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREI 61
           SPFLS+  LS+  T    SFS S+S+ L W S  S +   S  +  RRR+ ++QSKIREI
Sbjct: 3   SPFLSRAALSSNTTSVPFSFSYSVSSRLPWSSSRSHT---SVPANYRRRLPVIQSKIREI 59

Query: 62  FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE 121
           FMPALSSTMTEGKIVSW+KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV EGE
Sbjct: 60  FMPALSSTMTEGKIVSWVKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGEGE 119

Query: 122 SAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKK-VAESAP 180
           +APVGA IG+LAETE EVA+AKAKAAS   +APA+     +P P      P   +++S+P
Sbjct: 120 TAPVGAPIGLLAETEEEVAEAKAKAASKSTSAPAAPAAAVSPSPPPPSSSPAPAISQSSP 179

Query: 181 --SGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSK-------- 230
              GP+K VATP AKKL KQHKVDI SV GTGPFGRITP DVE AAGIAPSK        
Sbjct: 180 PSDGPKKIVATPQAKKLAKQHKVDIGSVTGTGPFGRITPADVEAAAGIAPSKPAVSNVAS 239

Query: 231 ---------SVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVP 281
                        SAAP+ LP P          +PGSTVVPFTTMQAAVSKNM+ESLSVP
Sbjct: 240 PVAAEAAAVPSKASAAPSNLPPP----------VPGSTVVPFTTMQAAVSKNMVESLSVP 289

Query: 282 TFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNAN 341
           TFRVGYP+ TDALDALYEKVKPKGVTMTALLAKAAAMAL QHPVVNASCKDGKSFTYN+N
Sbjct: 290 TFRVGYPVSTDALDALYEKVKPKGVTMTALLAKAAAMALAQHPVVNASCKDGKSFTYNSN 349

Query: 342 INIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL 401
           INIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL
Sbjct: 350 INIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL 409

Query: 402 GMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLA 461
           GMFGVD+FDAILPPGQGAIMAVGASKPTVV DADGFF VKSKMLVNVTADHRI+YGADLA
Sbjct: 410 GMFGVDKFDAILPPGQGAIMAVGASKPTVVTDADGFFSVKSKMLVNVTADHRIVYGADLA 469

Query: 462 AFLQTFSKIVENPESLTL 479
           AFLQTF+KIVENPESLTL
Sbjct: 470 AFLQTFAKIVENPESLTL 487

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423947|ref|XP_002282287.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Vitis vinifera]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/492 (74%), Positives = 403/492 (81%), Gaps = 23/492 (4%)

Query: 5   SPFLSKTPLSNTP---TISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREI 61
           SP LS+  +SN     TISFSSS+S  L W+   +F        +S R++  VQ+KIREI
Sbjct: 3   SPLLSRVSISNATAGNTISFSSSVSNGLLWRRSIAFP------DKSSRKVSTVQAKIREI 56

Query: 62  FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE 121
           FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV +GE
Sbjct: 57  FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGDGE 116

Query: 122 SAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES--- 178
            APVGA IG+LAETE E+A+AKAKA+ +G++AP   P  +    + + P       +   
Sbjct: 117 VAPVGAPIGLLAETEEEIAEAKAKASKSGSSAPPPPPAPAAASASPAAPAVAPPKSAASA 176

Query: 179 -APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
             P GP+K VATP+AKKL KQHKVDI SVVGTGPFGRITP DVE AAGI+PSKS   +  
Sbjct: 177 AVPDGPKKIVATPFAKKLAKQHKVDIGSVVGTGPFGRITPADVEAAAGISPSKSTGVNVV 236

Query: 238 PAALPKPAPAAAPAAPL----------LPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGY 287
            +    PAPA   AA            +PGSTVVPFTTMQAAVSKNM+ESLSVPTFRVGY
Sbjct: 237 SSVAAAPAPAPVAAAAPKAAASPAPPPIPGSTVVPFTTMQAAVSKNMVESLSVPTFRVGY 296

Query: 288 PIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA 347
           P++TD LDALYEKVKPKGVTMTALLAKAAAMAL QHPVVNASCKDGK+FTYN++INIAVA
Sbjct: 297 PVLTDKLDALYEKVKPKGVTMTALLAKAAAMALAQHPVVNASCKDGKTFTYNSSINIAVA 356

Query: 348 VAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVD 407
           VAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR+KQLQPHEYNSGTFTLSNLGMFGVD
Sbjct: 357 VAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVD 416

Query: 408 RFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTF 467
           RFDAILPPGQGAIMAVGASKPTVV D DGFF VKSKMLVNVTADHRIIYGADLAAFLQTF
Sbjct: 417 RFDAILPPGQGAIMAVGASKPTVVTDKDGFFSVKSKMLVNVTADHRIIYGADLAAFLQTF 476

Query: 468 SKIVENPESLTL 479
           +KIVENPESLTL
Sbjct: 477 AKIVENPESLTL 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230922|ref|NP_189215.1| 2-oxoacid dehydrogenases acyltransferase family protein [Arabidopsis thaliana] gi|5881963|gb|AAD55139.1|AF066079_1 dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana] gi|14335166|gb|AAK59863.1| AT3g25860/MPE11_1 [Arabidopsis thaliana] gi|26983848|gb|AAN86176.1| putative dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana] gi|332643559|gb|AEE77080.1| 2-oxoacid dehydrogenases acyltransferase family protein [Arabidopsis thaliana]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/472 (75%), Positives = 389/472 (82%), Gaps = 10/472 (2%)

Query: 13  LSNTPT-ISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMT 71
           L+N+ + ISF+SS+S  L+     S +P+      S RR   V+SKIREIFMPALSSTMT
Sbjct: 14  LTNSKSNISFASSVSPSLRSVVFRSTTPA-----TSHRRSMTVRSKIREIFMPALSSTMT 68

Query: 72  EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131
           EGKIVSWIK+EG+ L+KGESVVVVESDKADMDVETFYDG LAAIVV EGE+APVGAAIG+
Sbjct: 69  EGKIVSWIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLAAIVVGEGETAPVGAAIGL 128

Query: 132 LAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE---SAPSGPRKTVA 188
           LAETEAE+ +AK+KAAS  +++ A   V S P    SP           +   GPRKTVA
Sbjct: 129 LAETEAEIEEAKSKAASKSSSSVAEAVVPSPPPVTSSPAPAIAQPAPVTAVSDGPRKTVA 188

Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAA 248
           TPYAKKL KQHKVDI SV GTGPFGRIT  DVE AAGIAPSKS      P   P  A A 
Sbjct: 189 TPYAKKLAKQHKVDIESVAGTGPFGRITASDVETAAGIAPSKSSIAPPPPPPPPVTAKAT 248

Query: 249 APAAP-LLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVT 307
               P LLP S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+ TDALDALYEKVKPKGVT
Sbjct: 249 TTNLPPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPVNTDALDALYEKVKPKGVT 308

Query: 308 MTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDL 367
           MTALLAKAA MAL QHPVVNASCKDGKSF+YN++INIAVAVAINGGLITPVLQDADKLDL
Sbjct: 309 MTALLAKAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVAINGGLITPVLQDADKLDL 368

Query: 368 YLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 427
           YLLSQKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK
Sbjct: 369 YLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 428

Query: 428 PTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           PTVVAD DGFF VK+ MLVNVTADHRI+YGADLAAFLQTF+KI+ENP+SLTL
Sbjct: 429 PTVVADKDGFFSVKNTMLVNVTADHRIVYGADLAAFLQTFAKIIENPDSLTL 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576459|ref|XP_002529121.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis] gi|223531400|gb|EEF33234.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/493 (77%), Positives = 407/493 (82%), Gaps = 24/493 (4%)

Query: 1   MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRR-RIFIVQSKIR 59
           MA  SPFLSK P+SN  TISFSSS+S        T  S S    + +RR     VQSKIR
Sbjct: 1   MAASSPFLSKIPISNK-TISFSSSLSPS---FPPTFPSKSHHRQNHARRSNALRVQSKIR 56

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EIFMPALSSTMTEGKIVSWIK+EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE
Sbjct: 57  EIFMPALSSTMTEGKIVSWIKAEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 116

Query: 120 GESAPVGAAIGILAETEAEVAQAK---------AKAASAGAAAPASHPVTSTPVPAVSPP 170
           GESAPVGA IG+LAETE E+A+AK         + + +  A AP   PV+ST  PA++  
Sbjct: 117 GESAPVGAPIGLLAETEDEIAEAKAKANANTNASSSQTTAAVAPTPPPVSSTRAPAIAQ- 175

Query: 171 EPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSK 230
                A SAP GP+K VATPYA+KL KQH VDIN +VG+GP GRITP DVE AAGI   K
Sbjct: 176 --PAPAASAPEGPKKIVATPYARKLAKQHTVDINKLVGSGPNGRITPADVEAAAGI---K 230

Query: 231 SVAPSAAPAALPKPAPAAAPAAPLLP----GSTVVPFTTMQAAVSKNMIESLSVPTFRVG 286
           SVA +   AA P  APA AP A   P    GSTVVPFTTMQ+AVSKNM+ESLSVPTFRVG
Sbjct: 231 SVASAPVAAAAPAAAPAKAPPAAAAPPPLPGSTVVPFTTMQSAVSKNMVESLSVPTFRVG 290

Query: 287 YPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAV 346
           YPI TDALDALYEKVKPKGVTMTALLAKAAAMAL QHPVVNASCKDGKSFTYN+NINIAV
Sbjct: 291 YPISTDALDALYEKVKPKGVTMTALLAKAAAMALAQHPVVNASCKDGKSFTYNSNINIAV 350

Query: 347 AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV 406
           AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV
Sbjct: 351 AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV 410

Query: 407 DRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQT 466
           DRFDAILPPGQGAIMAVGASKPTVVAD DGFF VKSKMLVNVTADHRI+YGADLAAFLQT
Sbjct: 411 DRFDAILPPGQGAIMAVGASKPTVVADKDGFFSVKSKMLVNVTADHRIVYGADLAAFLQT 470

Query: 467 FSKIVENPESLTL 479
           F+KIVENPESLTL
Sbjct: 471 FAKIVENPESLTL 483

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814808|ref|XP_002875287.1| hypothetical protein ARALYDRAFT_904762 [Arabidopsis lyrata subsp. lyrata] gi|297321125|gb|EFH51546.1| hypothetical protein ARALYDRAFT_904762 [Arabidopsis lyrata subsp. lyrata]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 352/468 (75%), Positives = 378/468 (80%), Gaps = 11/468 (2%)

Query: 18  TISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVS 77
            ISF+SSIS  L+     S  P+      S RR   V+SKIREIFMPALSSTMTEGKIVS
Sbjct: 20  NISFASSISPSLRSVVFRSSIPA-----TSHRRSMTVRSKIREIFMPALSSTMTEGKIVS 74

Query: 78  WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137
           WIK+EG+ L+KGESVVVVESDKADMDVETFYDG LAAIVV EGE+APVG AIG+LAETEA
Sbjct: 75  WIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLAAIVVGEGETAPVGTAIGLLAETEA 134

Query: 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE---SAPSGPRKTVATPYAKK 194
           E+ +AK KAAS  +++     V S P    SP           +   GPRKTVATPYAKK
Sbjct: 135 EIEEAKTKAASKSSSSVVEAVVPSPPPVTSSPAPAIAQPAPVTAVADGPRKTVATPYAKK 194

Query: 195 LLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPL 254
           L KQHKVDI S+ GTGPFGRIT  DVE AAGIAPSKS      P   P  A A      L
Sbjct: 195 LAKQHKVDIGSIAGTGPFGRITASDVETAAGIAPSKSSVAQPPPPPTPVAAKATTTTTNL 254

Query: 255 LP---GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTAL 311
            P    S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+ TDALDALYEKVKPKGVTMTAL
Sbjct: 255 PPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPVNTDALDALYEKVKPKGVTMTAL 314

Query: 312 LAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLS 371
           LAKAA MAL QHPVVNASCKDGKSF+YNANINIAVAVAINGGLITPVLQDADKLDLYLLS
Sbjct: 315 LAKAAGMALAQHPVVNASCKDGKSFSYNANINIAVAVAINGGLITPVLQDADKLDLYLLS 374

Query: 372 QKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV 431
           QKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV
Sbjct: 375 QKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV 434

Query: 432 ADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           AD DGFF VK+ MLVNVTADHRI+YGADLAAFLQTF+KI+ENP+SLTL
Sbjct: 435 ADKDGFFSVKNTMLVNVTADHRIVYGADLAAFLQTFAKIIENPDSLTL 482

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9279589|dbj|BAB01047.1| dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 341/430 (79%), Positives = 367/430 (85%), Gaps = 4/430 (0%)

Query: 54  VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113
           V+SKIREIFMPALSSTMTEGKIVSWIK+EG+ L+KGESVVVVESDKADMDVETFYDG LA
Sbjct: 3   VRSKIREIFMPALSSTMTEGKIVSWIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLA 62

Query: 114 AIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPK 173
           AIVV EGE+APVGAAIG+LAETEAE+ +AK+KAAS  +++ A   V S P    SP    
Sbjct: 63  AIVVGEGETAPVGAAIGLLAETEAEIEEAKSKAASKSSSSVAEAVVPSPPPVTSSPAPAI 122

Query: 174 KVAE---SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSK 230
                  +   GPRKTVATPYAKKL KQHKVDI SV GTGPFGRIT  DVE AAGIAPSK
Sbjct: 123 AQPAPVTAVSDGPRKTVATPYAKKLAKQHKVDIESVAGTGPFGRITASDVETAAGIAPSK 182

Query: 231 S-VAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPI 289
           S +AP   P              PLLP S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+
Sbjct: 183 SSIAPPPPPPPPVTAKATTTNLPPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPV 242

Query: 290 ITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVA 349
            TDALDALYEKVKPKGVTMTALLAKAA MAL QHPVVNASCKDGKSF+YN++INIAVAVA
Sbjct: 243 NTDALDALYEKVKPKGVTMTALLAKAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVA 302

Query: 350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409
           INGGLITPVLQDADKLDLYLLSQKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRF
Sbjct: 303 INGGLITPVLQDADKLDLYLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 362

Query: 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSK 469
           DAILPPGQGAIMAVGASKPTVVAD DGFF VK+ MLVNVTADHRI+YGADLAAFLQTF+K
Sbjct: 363 DAILPPGQGAIMAVGASKPTVVADKDGFFSVKNTMLVNVTADHRIVYGADLAAFLQTFAK 422

Query: 470 IVENPESLTL 479
           I+ENP+SLTL
Sbjct: 423 IIENPDSLTL 432

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099359|ref|XP_002311453.1| predicted protein [Populus trichocarpa] gi|222851273|gb|EEE88820.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 359/479 (74%), Positives = 401/479 (83%), Gaps = 19/479 (3%)

Query: 5   SPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMP 64
           +PFLSKTP++N  +    S               PS  S  ++    F V +KIREIFMP
Sbjct: 4   TPFLSKTPINNFSSSLSPSLPL-----------LPSTLSHRKTNPNSFRVNAKIREIFMP 52

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
           ALSSTMTEGKIVSWIKSEGD+LSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE+AP
Sbjct: 53  ALSSTMTEGKIVSWIKSEGDLLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGETAP 112

Query: 125 VGAAIGILAETEAEVAQAKAKAAS--AGAAAPASHPVTSTPVPAVSPPEPKKVAES--AP 180
           VGA IG+LAETE E+A+AKAKAAS  +G+  P +  VT TP P  +      ++++  AP
Sbjct: 113 VGAPIGLLAETEEEIAEAKAKAASKASGSTPPVAETVTPTPPPPATSTPAPAISQTPAAP 172

Query: 181 SGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAA 240
            GPRKT  TP+AKKL KQHKVDI+ VVGTGP+GR+TP DVE AAGIA SK   PS + AA
Sbjct: 173 EGPRKTTVTPFAKKLAKQHKVDISKVVGTGPYGRVTPADVEAAAGIAVSK---PSESLAA 229

Query: 241 LPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEK 300
             K A A++   P LPGS +VPFTTMQAAVSKNM+ESLSVPTFRVGYP+ITDALDA ++K
Sbjct: 230 TVKAA-ASSSVPPPLPGSNIVPFTTMQAAVSKNMVESLSVPTFRVGYPVITDALDAFHDK 288

Query: 301 VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQ 360
           VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYN++INIAVAVAINGGLITPVLQ
Sbjct: 289 VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNSSINIAVAVAINGGLITPVLQ 348

Query: 361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI 420
           DADKLDLYLLS+KWKELVEKAR+KQLQPHEYNSGTFT+SNLGMFGVDRFDAILPPG GAI
Sbjct: 349 DADKLDLYLLSKKWKELVEKARAKQLQPHEYNSGTFTVSNLGMFGVDRFDAILPPGHGAI 408

Query: 421 MAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           MAVGASKPTV+AD DGFF VK+KMLVNVTADHRI+YGADLAAFLQTF++IVENPESLTL
Sbjct: 409 MAVGASKPTVLADKDGFFSVKNKMLVNVTADHRIVYGADLAAFLQTFARIVENPESLTL 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111700|ref|XP_002315946.1| predicted protein [Populus trichocarpa] gi|222864986|gb|EEF02117.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 358/437 (81%), Positives = 381/437 (87%), Gaps = 18/437 (4%)

Query: 54  VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113
           VQ+KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA
Sbjct: 6   VQAKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 65

Query: 114 AIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPK 173
           AIVVPEGE+APVGA IG+LAETE E+A+AKAKAAS           +S+P   +SPP+  
Sbjct: 66  AIVVPEGETAPVGAPIGLLAETEEEIAEAKAKAASKAGG-------SSSPATPISPPDSS 118

Query: 174 ---------KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA 224
                      A +AP GPRKTVATP+AKKL +QHKVDIN VVGTGP+GRITP DVE AA
Sbjct: 119 TPAPAIPQPPPAPAAPEGPRKTVATPFAKKLARQHKVDINKVVGTGPYGRITPADVEAAA 178

Query: 225 GIAPSKSVAPSAAPAALPKPAPAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIESLSVPT 282
           GIA SK    SA+PAA   P  AAA ++    LPGS VVPFT+MQ AVSKNM+ESLSVPT
Sbjct: 179 GIAVSKPSVSSASPAAAAAPVMAAASSSAPPPLPGSNVVPFTSMQGAVSKNMVESLSVPT 238

Query: 283 FRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANI 342
           FRVGYPI TDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYN+NI
Sbjct: 239 FRVGYPITTDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNSNI 298

Query: 343 NIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG 402
           NIAVAVAINGGLITPVLQDADKLDLYLLS+KWKELVEKAR+KQLQP EYNSGTFTLSNLG
Sbjct: 299 NIAVAVAINGGLITPVLQDADKLDLYLLSKKWKELVEKARAKQLQPQEYNSGTFTLSNLG 358

Query: 403 MFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAA 462
           MFGVDRFDAILPPGQGAIMAVGASKPTVVAD DGFF VKSKMLVNVTADHRI+YGADLAA
Sbjct: 359 MFGVDRFDAILPPGQGAIMAVGASKPTVVADKDGFFSVKSKMLVNVTADHRIVYGADLAA 418

Query: 463 FLQTFSKIVENPESLTL 479
           FLQTF+KIVENPESLTL
Sbjct: 419 FLQTFAKIVENPESLTL 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575530|ref|XP_003555893.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Glycine max]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 343/442 (77%), Positives = 373/442 (84%), Gaps = 12/442 (2%)

Query: 46  RSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVE 105
           R R   F VQ+KIREIFMPALSSTMTEGKIVSWIKSEGD+LSKG+SVVVVESDKADMDVE
Sbjct: 35  RRRASSFSVQAKIREIFMPALSSTMTEGKIVSWIKSEGDMLSKGDSVVVVESDKADMDVE 94

Query: 106 TFYDGILAAIVVPEGESAPVGAAIGILAET---EAEVAQAKAKAASAGAAAPASHPVTST 162
           TFYDGILAAIVV +GE+APVGA IG+LA++    AE     AK+  +G+ APAS    S 
Sbjct: 95  TFYDGILAAIVVADGETAPVGAPIGLLADSPEEVAEAKAKAAKSVPSGSPAPASPSDPSP 154

Query: 163 PVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
             P   PP  K V+E    GP K VATP AKKL KQHKVDI +V GTGPFGRITP DVE 
Sbjct: 155 ATPPPPPPPAKSVSE----GPAKIVATPQAKKLAKQHKVDIATVAGTGPFGRITPADVEA 210

Query: 223 AAGIAPSKS-----VAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES 277
           AAGIAPSK        P+ A  A P  A + + A   +PGS+VVPFTTMQ+AV+KNM+ES
Sbjct: 211 AAGIAPSKRNVAPAAIPAPATPAPPSKAASGSAAPAPIPGSSVVPFTTMQSAVAKNMMES 270

Query: 278 LSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFT 337
           LSVPTFRVGYP+ TDALDALYEKVKPKGVTMTA+LAKAAAMALVQHPVVNA+CKDGK+F 
Sbjct: 271 LSVPTFRVGYPVTTDALDALYEKVKPKGVTMTAILAKAAAMALVQHPVVNATCKDGKNFV 330

Query: 338 YNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFT 397
           YN NIN+AVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR+KQLQPHEYNSGTFT
Sbjct: 331 YNGNINVAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFT 390

Query: 398 LSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYG 457
           LSNLGMFGVDRFDAILPPGQGAIMAVGASKPTV+AD DGFF VK+KMLVNVTADHRIIYG
Sbjct: 391 LSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFSVKNKMLVNVTADHRIIYG 450

Query: 458 ADLAAFLQTFSKIVENPESLTL 479
           ADLAAFLQTFSKI+ENPESLTL
Sbjct: 451 ADLAAFLQTFSKIIENPESLTL 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498274|ref|XP_003517978.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Glycine max]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/478 (75%), Positives = 402/478 (84%), Gaps = 22/478 (4%)

Query: 5   SPFL-SKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFM 63
           SPFL +KT   N+ T+SFS+++  P +      F+ S S S R RR    V+SKIREIFM
Sbjct: 3   SPFLPAKT---NSATLSFSAAV--PGRR---LHFAASPSHSPR-RRSSLTVKSKIREIFM 53

Query: 64  PALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA 123
           PALSSTMTEGKIVSW+KSEGDVLSKG+SVVVVESDKADMDVETFY+GILA IVV EG++A
Sbjct: 54  PALSSTMTEGKIVSWVKSEGDVLSKGDSVVVVESDKADMDVETFYNGILAVIVVAEGQTA 113

Query: 124 PVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGP 183
           PVGA IG+LAETEAEVA+A A A SA    P +   +  P PA   PE   V++S    P
Sbjct: 114 PVGAPIGLLAETEAEVAEAMAAANSAPTPPPKASDTSPAPAPA---PE---VSDS----P 163

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKS-VAPSAAPAALP 242
           RK VATPYAKKL KQHKV+I SVVGTGPFGR+TP DVEKAAGI P++S VAP+A  +A P
Sbjct: 164 RKAVATPYAKKLAKQHKVNIGSVVGTGPFGRVTPADVEKAAGILPAESNVAPAAVDSAPP 223

Query: 243 KPAPAAAPAAPLLP-GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKV 301
           K A AA  A+     GS+VV FTTMQ+AV+KNM+ESLSVPTFRVGYP+ TDALDALYEKV
Sbjct: 224 KAAAAAPAASSASIPGSSVVAFTTMQSAVAKNMVESLSVPTFRVGYPVTTDALDALYEKV 283

Query: 302 KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD 361
           + KGVTMTA+LAKAAAMALVQHPVVNASCKDGK+F YN+NINIAVAVA NGGLITPVLQD
Sbjct: 284 RKKGVTMTAILAKAAAMALVQHPVVNASCKDGKNFAYNSNINIAVAVATNGGLITPVLQD 343

Query: 362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIM 421
           ADKLDLYLLSQKWKELVEKAR+KQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIM
Sbjct: 344 ADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIM 403

Query: 422 AVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           AVGASKPTV+AD DGFF VKSKMLVNVTADHRIIYGADLAAFLQTFSKI+ENPE LTL
Sbjct: 404 AVGASKPTVLADKDGFFTVKSKMLVNVTADHRIIYGADLAAFLQTFSKIIENPECLTL 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
TAIR|locus:2092070	480	LTA2 "AT3G25860" [Arabidopsis	0.889	0.887	0.674	4.8e-142
TAIR|locus:2009273	465	EMB3003 "AT1G34430" [Arabidops	0.603	0.621	0.59	7.5e-120
GENEDB_PFALCIPARUM|PF10_0407	640	PF10_0407 "dihydrolipoamide ac	0.436	0.326	0.345	1.4e-50
UNIPROTKB|Q8IJJ4	640	PF10_0407 "Dihydrolipoamide ac	0.436	0.326	0.345	1.4e-50
TIGR_CMR|NSE_0953	403	NSE_0953 "pyruvate dehydrogena	0.440	0.523	0.345	6.2e-48
TIGR_CMR|SPO_2242	437	SPO_2242 "pyruvate dehydrogena	0.256	0.281	0.487	4e-45
MGI|MGI:2385311	642	Dlat "dihydrolipoamide S-acety	0.459	0.342	0.298	5.9e-44
UNIPROTKB|H0YDD4	479	DLAT "Dihydrolipoyllysine-resi	0.265	0.265	0.437	1.7e-43
RGD|619859	632	Dlat "dihydrolipoamide S-acety	0.455	0.344	0.296	1.8e-43
TIGR_CMR|ECH_0098	416	ECH_0098 "pyruvate dehydrogena	0.434	0.5	0.308	6.3e-43

TAIR|locus:2092070 LTA2 "AT3G25860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
 Identities = 290/430 (67%), Positives = 307/430 (71%)

Query:    54 VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113
             V+SKIREIFMPALSSTMTEGKIVSWIK+EG+ L+KGESVVVVESDKADMDVETFYDG LA
Sbjct:    51 VRSKIREIFMPALSSTMTEGKIVSWIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLA 110

Query:   114 AIVVPEGESAPVGAAIGILXXXXXXXXXXXXXXXXXXXXXXXSHXXXX---XXXXXXXXX 170
             AIVV EGE+APVGAAIG+L                                         
Sbjct:   111 AIVVGEGETAPVGAAIGLLAETEAEIEEAKSKAASKSSSSVAEAVVPSPPPVTSSPAPAI 170

Query:   171 XXXXXXESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXX 230
                    +   GPRKTVATPYAKKL KQHKVDI SV GTGPFGRIT  DVE AAGI    
Sbjct:   171 AQPAPVTAVSDGPRKTVATPYAKKLAKQHKVDIESVAGTGPFGRITASDVETAAGIAPSK 230

Query:   231 XXXXXXXXXXXXXXXXXXXXXXXXXX-GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPI 289
                                         S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+
Sbjct:   231 SSIAPPPPPPPPVTAKATTTNLPPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPV 290

Query:   290 ITDALDALYEKVKPKGVTMTXXXXXXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXX 349
              TDALDALYEKVKPKGVTMT            QHPVVNASCKDGKSF+Y           
Sbjct:   291 NTDALDALYEKVKPKGVTMTALLAKAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVA 350

Query:   350 XXGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409
               GGLITPVLQDADKLDLYLLSQKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRF
Sbjct:   351 INGGLITPVLQDADKLDLYLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 410

Query:   410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSK 469
             DAILPPGQGAIMAVGASKPTVVAD DGFF VK+ MLVNVTADHRI+YGADLAAFLQTF+K
Sbjct:   411 DAILPPGQGAIMAVGASKPTVVADKDGFFSVKNTMLVNVTADHRIVYGADLAAFLQTFAK 470

Query:   470 IVENPESLTL 479
             I+ENP+SLTL
Sbjct:   471 IIENPDSLTL 480

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TAIR|locus:2009273 EMB3003 "AT1G34430" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
 Identities = 177/300 (59%), Positives = 210/300 (70%)

Query:   179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXXXXXXX 238
             A  G ++ VA+PYAKKL K+ KV++  +VG+GP GRI  +DVE  A              
Sbjct:   176 ASEGGKRIVASPYAKKLAKELKVELAGLVGSGPMGRIVAKDVEAVAA----------GGG 225

Query:   239 XXXXXXXXXXXXXXXXXXGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALY 298
                               GS VVPFTTMQ AVS+NM+ESL VPTFRVGY I TDALDALY
Sbjct:   226 VQAAVAVKEVVAAPGVELGS-VVPFTTMQGAVSRNMVESLGVPTFRVGYTISTDALDALY 284

Query:   299 EKVKPKGVTMTXXXXXXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPV 358
             +K+K KGVTMT            +HPVVN+SC+DG SF Y             GGLITPV
Sbjct:   285 KKIKSKGVTMTALLAKATALALAKHPVVNSSCRDGNSFVYNSSINVAVAVAIDGGLITPV 344

Query:   359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
             LQ+ADK+D+Y LS+KWKELV+KAR+KQLQP EYN+GTFTLSNLGMFGVDRFDAILPPG G
Sbjct:   345 LQNADKVDIYSLSRKWKELVDKARAKQLQPQEYNTGTFTLSNLGMFGVDRFDAILPPGTG 404

Query:   419 AIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT 478
             AIMAVGAS+P+VVA  DG  G+K++M VNVTADHR+IYGADLA FLQT + I+E+P+ LT
Sbjct:   405 AIMAVGASQPSVVATKDGRIGMKNQMQVNVTADHRVIYGADLAQFLQTLASIIEDPKDLT 464

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0407 PF10_0407 "dihydrolipoamide acetyltransferase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 327 (120.2 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
 Identities = 74/214 (34%), Positives = 115/214 (53%)

Query:   261 VPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTXXXXXXXXXXX 320
             V  T +Q ++  NM+ +L+VP FRV + I T+ L  LYEKVK K ++M+           
Sbjct:   422 VDMTNIQKSIKNNMMLTLTVPVFRVTHLIKTNELLKLYEKVKQK-ISMSVIINKCVSSVL 480

Query:   321 VQHPVVNASC--KDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELV 378
             + HP++ ++   KD     Y               L+TPVL+  DK D+Y L+ +WK LV
Sbjct:   481 LNHPLIYSTYIDKDNGKILYNKDVNIGNALGLPDSLLTPVLKKVDKKDIYTLANEWKILV 540

Query:   379 EKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFF 438
             EK ++  L  ++     F +SNLGMF   +FDAILP     I+++G +  ++    D   
Sbjct:   541 EKGKNGLLSSNDMTGSNFYISNLGMFNTYQFDAILPKNSSCILSIGTNIGSIDNLED--L 598

Query:   439 GVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472
              ++  M++ +T DHR IYG+  AAF+   SK +E
Sbjct:   599 KIQKGMMMTLTCDHRHIYGSHAAAFMNDLSKFIE 632

GO:0020011 "apicoplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|Q8IJJ4 PF10_0407 "Dihydrolipoamide acyltransferase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 327 (120.2 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
 Identities = 74/214 (34%), Positives = 115/214 (53%)

Query:   261 VPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTXXXXXXXXXXX 320
             V  T +Q ++  NM+ +L+VP FRV + I T+ L  LYEKVK K ++M+           
Sbjct:   422 VDMTNIQKSIKNNMMLTLTVPVFRVTHLIKTNELLKLYEKVKQK-ISMSVIINKCVSSVL 480

Query:   321 VQHPVVNASC--KDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELV 378
             + HP++ ++   KD     Y               L+TPVL+  DK D+Y L+ +WK LV
Sbjct:   481 LNHPLIYSTYIDKDNGKILYNKDVNIGNALGLPDSLLTPVLKKVDKKDIYTLANEWKILV 540

Query:   379 EKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFF 438
             EK ++  L  ++     F +SNLGMF   +FDAILP     I+++G +  ++    D   
Sbjct:   541 EKGKNGLLSSNDMTGSNFYISNLGMFNTYQFDAILPKNSSCILSIGTNIGSIDNLED--L 598

Query:   439 GVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472
              ++  M++ +T DHR IYG+  AAF+   SK +E
Sbjct:   599 KIQKGMMMTLTCDHRHIYGSHAAAFMNDLSKFIE 632

GO:0005739 "mitochondrion" evidence=ISS

GO:0020011 "apicoplast" evidence=IDA

TIGR_CMR|NSE_0953 NSE_0953 "pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 316 (116.3 bits), Expect = 6.2e-48, Sum P(3) = 6.2e-48
 Identities = 77/223 (34%), Positives = 124/223 (55%)

Query:   259 TVVPFTTMQAAVSKNMIESL-SVPTFRVGYPI----ITDALDALYEKVKPKGVTMTXXXX 313
             T +P + M+  +++ ++ES  +VP F +        +  A    Y+ ++ K VT+     
Sbjct:   182 TSIPISPMRRVIAQRLVESKQNVPHFYLSVTCYLQHLLSAKKKFYDCLETK-VTVNDFVI 240

Query:   314 XXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQK 373
                     ++P +N S  +G+                  GLITP++  ADKL L  +S +
Sbjct:   241 KACAFALDKNPAMNVSW-EGEFIRQNQTIDISVAVAIPDGLITPIVFSADKLSLSSISDE 299

Query:   374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK--PTVV 431
              +ELV+KA++ +LQP E+  G+FT+SNLGM+G+D F AI+ P Q AI+AVGA++  PTV 
Sbjct:   300 VRELVDKAKAGRLQPREFQGGSFTVSNLGMYGIDEFTAIINPPQAAILAVGAARKVPTVS 359

Query:   432 ADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENP 474
             ADA     V   + + ++ DHR+I GA  A F+Q+  K +E+P
Sbjct:   360 ADA---VVVSDVVTLTLSCDHRVIDGALAARFMQSLKKAIEDP 399

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|SPO_2242 SPO_2242 "pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 287 (106.1 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
 Identities = 60/123 (48%), Positives = 77/123 (62%)

Query:   352 GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411
             GGL TPVL+DAD   L  LS + K+L  +AR ++L PHEY  G+F +SNLGMFG+D FDA
Sbjct:   310 GGLFTPVLKDADMKSLSALSTEMKDLATRARDRKLAPHEYQGGSFAISNLGMFGIDNFDA 369

Query:   412 ILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIV 471
             I+ P    I+AVG+     V  ADG   V + M V ++ DHR+I GA  A  LQ     +
Sbjct:   370 IVNPPHAGILAVGSGVKKPVVGADGELTVATVMSVTMSVDHRVIDGALGAQLLQAIVDNL 429

Query:   472 ENP 474
             ENP
Sbjct:   430 ENP 432

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

MGI|MGI:2385311 Dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 5.9e-44, Sum P(3) = 5.9e-44
 Identities = 68/228 (29%), Positives = 118/228 (51%)

Query:   259 TVVPFTTMQAAVSKNMIESL-SVPTFRVGYPI-ITDAL---DALYEKVKPKG-VTMTXXX 312
             T +P + ++  +++ +++S  ++P + +   + + + L     L + ++ KG +++    
Sbjct:   416 TDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFI 475

Query:   313 XXXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQ 372
                     ++ P  N+S  D                    GLITP++ +A    L  ++ 
Sbjct:   476 IKASALACLKVPEANSSWMD-TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIAS 534

Query:   373 KWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV- 431
                 L  KAR  +LQPHE+  GTFT+SNLGMFG+  F AI+ P Q  I+A+GAS+  ++ 
Sbjct:   535 DVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIP 594

Query:   432 ADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
             AD +  F V S M V ++ DHR++ GA  A +L  F K +E P ++ L
Sbjct:   595 ADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPITMLL 642

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IC

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;TAS

UNIPROTKB|H0YDD4 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 258 (95.9 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
 Identities = 56/128 (43%), Positives = 80/128 (62%)

Query:   353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
             GLITP++ +A    +  ++     L  KAR  +LQPHE+  GTFT+SNLGMFG+  F AI
Sbjct:   352 GLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAI 411

Query:   413 LPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIV 471
             + P Q  I+A+GAS+  +V AD +  F V S M V ++ DHR++ GA  A +L  F K +
Sbjct:   412 INPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYL 471

Query:   472 ENPESLTL 479
             E P ++ L
Sbjct:   472 EKPITMLL 479

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

RGD|619859 Dlat "dihydrolipoamide S-acetyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
 Identities = 67/226 (29%), Positives = 117/226 (51%)

Query:   261 VPFTTMQAAVSKNMIESL-SVPTFRVGYPI-ITDAL---DALYEKVKPKG-VTMTXXXXX 314
             +P + ++  +++ +++S  ++P + +   + + + L     L + ++ KG +++      
Sbjct:   408 IPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFIIK 467

Query:   315 XXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKW 374
                   ++ P  N+S  D                    GLITP++ +A    L  ++   
Sbjct:   468 ASALACLKVPEANSSWMD-TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIASDV 526

Query:   375 KELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV-AD 433
               L  KAR  +LQPHE+  GTFT+SNLGMFG+  F AI+ P Q  I+A+GAS+  ++ AD
Sbjct:   527 VSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPAD 586

Query:   434 ADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
              +  F V S M V ++ DHR++ GA  A +L  F K +E P ++ L
Sbjct:   587 NEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPVTMLL 632

GO:0000166 "nucleotide binding" evidence=TAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030431 "sleep" evidence=IEP

GO:0045254 "pyruvate dehydrogenase complex" evidence=IDA;TAS

TIGR_CMR|ECH_0098 ECH_0098 "pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 259 (96.2 bits), Expect = 6.3e-43, Sum P(3) = 6.3e-43
 Identities = 67/217 (30%), Positives = 108/217 (49%)

Query:   264 TTMQAAVSKNMIESL-SVPTFRVGYPIITDALDALYEKVKPKG----VTMTXXXXXXXXX 318
             ++M+  +++ ++ S  ++P F V    + D+L  L  ++  +     VT+          
Sbjct:   198 SSMRRVIAERLVYSKQTIPHFYVSIDCLVDSLLKLRLEINAENPDTKVTVNDFIIKAVAM 257

Query:   319 XXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELV 378
                + P +N S  D K   +              GLITP++  ADK  L  +S++ K L 
Sbjct:   258 SIKKFPEINVSWSDDKIVVFPSIDISVAVSID-NGLITPIIFGADKKSLLEISREVKALA 316

Query:   379 EKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGAS-KPTVVADADGF 437
              KA+S +L+P E+  G FT+SNLGMFG+  F AI+ P Q  IM+VG S K  +V +    
Sbjct:   317 SKAKSGKLKPEEFQGGGFTVSNLGMFGIKEFYAIVNPPQSCIMSVGCSEKRAMVVNEQ-- 374

Query:   438 FGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENP 474
               + + + V ++ DHR+I G   A FL  F   +E P
Sbjct:   375 ICISNVVTVTLSVDHRVIDGVLAAKFLNCFKSYLEKP 411

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O31550	ACOC_BACSU	2, ., 3, ., 1, ., 1, 2	0.3139	0.8037	0.9673	yes	no
Q4ULG1	ODP2_RICFE	2, ., 3, ., 1, ., 1, 2	0.3325	0.8246	0.9587	yes	no
Q68WK6	ODP2_RICTY	2, ., 3, ., 1, ., 1, 2	0.3278	0.8079	0.9579	yes	no
Q9ZD20	ODP2_RICPR	2, ., 3, ., 1, ., 1, 2	0.3193	0.8058	0.9460	yes	no
Q9R9N3	ODP2_RHIME	2, ., 3, ., 1, ., 1, 2	0.3193	0.8308	0.8903	yes	no
O66119	ODP2_ZYMMO	2, ., 3, ., 1, ., 1, 2	0.3325	0.8434	0.9181	yes	no
Q1RJT3	ODP2_RICBR	2, ., 3, ., 1, ., 1, 2	0.3317	0.8371	0.9593	yes	no
P22439	ODPX_BOVIN	No assigned EC number	0.3384	0.8538	0.8163	yes	no
O59816	ODP2_SCHPO	2, ., 3, ., 1, ., 1, 2	0.3348	0.8517	0.8447	yes	no
P12695	ODP2_YEAST	2, ., 3, ., 1, ., 1, 2	0.3259	0.8643	0.8589	yes	no
Q92HK7	ODP2_RICCN	2, ., 3, ., 1, ., 1, 2	0.3349	0.8246	0.9587	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.766
3rd Layer	2.3.1.12	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	LTA2	LTA2; dihydrolipoyllysine-residue acetyltransferase; Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. (480 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	EMB3003	EMB3003 (embryo defective 3003); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase [...] (465 aa)			•	•	•		•	•	0.931
	LPD1	LPD1 (LIPOAMIDE DEHYDROGENASE 1); dihydrolipoyl dehydrogenase; encodes a plastid lipoamide dehy [...] (623 aa)	•	•		•	•	•	•		0.907
	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring); p [...] (428 aa)	•		•	•		•	•		0.882
	CAC1	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding; En [...] (280 aa)				•			•		0.863
	mtLPD1	mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase; En [...] (507 aa)	•	•	•	•	•	•	•		0.832
	KAS_I	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase; 3-ketoacyl- [...] (473 aa)				•					0.827
	MOD1	MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ enoyl-[acyl-carrier-prote [...] (390 aa)				•			•		0.796
	AT3G25545	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (267 aa)					•				0.792
	mtLPD2	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase; lipoamide dehydr [...] (507 aa)	•	•	•		•	•	•		0.790
	MAB1	MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring); MACCI-BOU (MAB1); FU [...] (363 aa)	•		•			•	•		0.772

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	479
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-149
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-105
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	5e-90
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	6e-81
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-69
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	3e-69
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	2e-58
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	3e-55
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	4e-53
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-52
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	4e-46
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	5e-42
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	7e-42
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-37
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	1e-29
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-27
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	2e-26
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	4e-26
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	5e-24
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	4e-20
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	6e-17
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	8e-14
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-12
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	3e-12
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	4e-12
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	1e-11
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	2e-10
pfam02817	39	pfam02817, E3_binding, e3 binding domain	2e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	1e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.003

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  431 bits (1110), Expect = e-149
 Identities = 167/425 (39%), Positives = 241/425 (56%), Gaps = 19/425 (4%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           + E  MP L   MTEG+IV W+   GD + +G+ +  VE+DKA +++ +   G +A ++V
Sbjct: 2   MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLV 61

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            EG+  PVG+ I ++ E     A     AA+A AA  A  P  +    A +   P   A 
Sbjct: 62  EEGDVVPVGSVIAVIEEEGEAEA-----AAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAA 116

Query: 178 SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
            A        A+P  +KL ++  VD+++V G+GP GRIT EDVE AA          +AA
Sbjct: 117 PAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAA---------AAA 167

Query: 238 PAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA 296
           PAA    A AAAP A    G   VP + M+ A++K M+ES   +P F +   +   AL A
Sbjct: 168 PAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLA 227

Query: 297 LYEKVKP--KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGL 354
           L +++K     +T+T  L KA A+AL + P +NAS  D  +      +NI +AVA +GGL
Sbjct: 228 LRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASW-DDDAIVLKKYVNIGIAVATDGGL 286

Query: 355 ITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP 414
           I PV++DADK  L+ L+++ K+L EKAR  +L+P E   GTFT+SNLGMFG D F  I+ 
Sbjct: 287 IVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIIN 346

Query: 415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENP 474
           P + AI+ VGA     V   DG   V+  M ++++ DHR+I GAD A FL+   +++ENP
Sbjct: 347 PPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENP 405

Query: 475 ESLTL 479
             L L
Sbjct: 406 ALLLL 410

Length = 411

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  319 bits (820), Expect = e-105
 Identities = 159/430 (36%), Positives = 228/430 (53%), Gaps = 36/430 (8%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
             EI MP L  TMTEG IV W+K  GD + +G+ +V VE+DKA M+V     G+LA I+V
Sbjct: 2   AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILV 61

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            EG++ PVGA I  + E               GA APA+      P  A     P   A 
Sbjct: 62  EEGDTVPVGAVIARIEE--------------EGADAPAAAEAPPEPAAAAPASAPATAAS 107

Query: 178 SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
           +A        A+P  ++L ++  +D++ V GTGP GRIT +DVE A           +  
Sbjct: 108 AAAGRVL---ASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAV----------AEK 154

Query: 238 PAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA 296
            AA   PAPAAA  A        VP + ++ A+++ M+ES  ++P   +   +    L A
Sbjct: 155 AAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMA 214

Query: 297 LYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC-KDGKSFTYNANINIAVAVA 349
           L +K+K         +T  + L KA   AL + P VNAS   DG+   Y+  +NI +AV 
Sbjct: 215 LRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVD 274

Query: 350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409
              GL+ PV++DADK  L  ++++ K+L +KAR  +L P E   GTFT+SNLGMFG   F
Sbjct: 275 TPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMF 334

Query: 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSK 469
             I+ P Q AI+ VGA +   V    G   V+  M ++++ DHR+I GA+ A FL    +
Sbjct: 335 TPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKE 393

Query: 470 IVENPESLTL 479
           ++E+PE L L
Sbjct: 394 LLEDPERLLL 403

Length = 404

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  280 bits (719), Expect = 5e-90
 Identities = 162/445 (36%), Positives = 243/445 (54%), Gaps = 34/445 (7%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TMT G +  W+K EGD ++ G+ +  +E+DKA M+ E   +G LA I+VPE
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP-----K 173
           G +  PV   I +L E + +VA A        +A+PA  P    P    S P+P     K
Sbjct: 61  GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120

Query: 174 KVAESAPS-------GPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226
           +  E +            +  A+P AKKL K+  +D+++V G+GP GRI  +D+E     
Sbjct: 121 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESF--- 177

Query: 227 APSKSVAPSAAPAALPKPAPAAAPAAPLLPGS-TVVPFTTMQAAVSKNMIES-LSVPTFR 284
              +S A +   AA   P      AAP+  GS   VP + ++  ++K ++ES  ++P + 
Sbjct: 178 -VPQSPASANQQAAATTP-ATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYY 235

Query: 285 VGYPIITDALDAL--------YEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSF 336
           V      D L AL         E  K   +++   + KA+A+AL + P  N+S  D    
Sbjct: 236 VSIECNVDKLLALRKELNAMASEVYK---LSVNDFIIKASALALREVPEANSSWTD-NFI 291

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTF 396
               N++I+VAVA   GLITP++++AD   L  +S + K+L ++AR+ +L+P E+  GTF
Sbjct: 292 RRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTF 351

Query: 397 TLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV--ADADGFFGVKSKMLVNVTADHRI 454
           T+SNLGMFG+  F AI+ P Q  I+AVGA +   V   D +  F V S M V ++ DHR+
Sbjct: 352 TISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRV 411

Query: 455 IYGADLAAFLQTFSKIVENPESLTL 479
           I GA  A FL++F K +ENP  + L
Sbjct: 412 IDGAVGAEFLKSFKKYLENPIEMLL 436

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  260 bits (666), Expect = 6e-81
 Identities = 164/437 (37%), Positives = 234/437 (53%), Gaps = 26/437 (5%)

Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +EI MP+LS TMTEG I  W+K EGD +S GE +  VE+DKA +++E   +G LA IV  
Sbjct: 113 QEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 172

Query: 119 EG-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAV-------SPP 170
           +G +   VG  I I  E E ++ + K    S+ AA  A     S P P         S P
Sbjct: 173 DGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSP 232

Query: 171 EPK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPS 229
           EPK     + PS   +  A+P A+KL + + V ++S+ GTGP GRI   D+E        
Sbjct: 233 EPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDY------ 286

Query: 230 KSVAPSAAPAALPKPAPAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIES--LSVPTFRV 285
             +A     A  P    + APA     +P + +   T  +   SK  I    L+V T RV
Sbjct: 287 --LASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDT-RV 343

Query: 286 GYPI-ITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINI 344
              + +   L++L E    K +++  L+ KAAA+AL + P  N+S  D     Y+ N+NI
Sbjct: 344 DKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYH-NVNI 402

Query: 345 AVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL-GM 403
            VAV    GL  PV++DADK  L  ++++ K+L +KAR   L+P +Y  GTFT+SNL G 
Sbjct: 403 NVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGP 462

Query: 404 FGVDRFDAILPPGQGAIMAVG-ASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAA 462
           FG+ +F AI+ P Q AI+AVG A K  +       +   S M V ++ DHR+I GA  A 
Sbjct: 463 FGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAE 522

Query: 463 FLQTFSKIVENPESLTL 479
           +L+ F   +ENPES+ L
Sbjct: 523 WLKAFKGYIENPESMLL 539

Length = 539

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  231 bits (591), Expect = 1e-69
 Identities = 134/445 (30%), Positives = 213/445 (47%), Gaps = 35/445 (7%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
             + E+ +P +   +TE +++ W+   GD + + +S++ VE+DKA M++ +   G++  I
Sbjct: 117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEI 175

Query: 116 VVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV 175
            V  G+   VG+ + ++   E   A   A AA A AA  A+      P PA +       
Sbjct: 176 KVKVGDKVSVGSLLVVI---EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAA 232

Query: 176 AESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPS 235
             +A +  +   A+P  ++L ++  VD++ V GTG  GRIT EDV+        K    +
Sbjct: 233 PAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFV-----KGAMSA 287

Query: 236 AAPAALPKPAPAAAPAAPLLPGSTV----------VPFTTMQAAVSKNMIESLS-VPTFR 284
           AA AA    A A      LLP   V           P + ++   + N+  S   +P   
Sbjct: 288 AAAAA-AAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVT 346

Query: 285 VGYPI-ITDALDALYEKVKP----KGV--TMTALLAKAAAMALVQHPVVNASC-KDGKSF 336
                 ITD L+AL +++K      GV  TM     KA   AL + PV NAS  +DG   
Sbjct: 347 QFDEADITD-LEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDEL 405

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTF 396
           TY    NI  AV    GL+ PV++D DK  L  ++++  EL +KAR  +L+P +   G F
Sbjct: 406 TYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCF 465

Query: 397 TLSNLGMFGVDRFDAILPPGQGAIMAVGAS--KPTVVADADGFFGVKSKMLVNVTADHRI 454
           T+S+LG  G   F  I+   + AI+ VG S  KP         F  +  + ++++ DHR+
Sbjct: 466 TISSLGGIGGTAFTPIINAPEVAILGVGKSQMKP---VWDGKEFVPRLMLPLSLSYDHRV 522

Query: 455 IYGADLAAFLQTFSKIVENPESLTL 479
           I GA  A F     +++ +P  + L
Sbjct: 523 IDGATAARFTNYLKQLLADPRRMLL 547

Length = 547

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  219 bits (560), Expect = 3e-69
 Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 8/213 (3%)

Query: 274 MIESL-SVPTFRVGYPIITDALDALYEKVKPKG------VTMTALLAKAAAMALVQHPVV 326
           M ES  ++P F +   +   AL AL EK+K         +T    L KA A+AL + P +
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKEGLKLTFLDFLVKAVALALKEFPEL 60

Query: 327 NASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQL 386
           NAS        Y   +NI +AVA   GLI PV+++AD+  L  ++++ K+L E+AR  +L
Sbjct: 61  NASWDGDAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGKL 120

Query: 387 QPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLV 446
           +P +   GTFT+SNLGMFGV  F  I+ P Q AI+ VGA +   V   DG   ++  M +
Sbjct: 121 KPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVV-VDGEIVIRKVMPL 179

Query: 447 NVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           +++ DHR+I GA+ A FL    +++ENPE L L
Sbjct: 180 SLSFDHRVIDGAEAARFLNDLKELLENPELLLL 212

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  197 bits (503), Expect = 2e-58
 Identities = 127/431 (29%), Positives = 211/431 (48%), Gaps = 42/431 (9%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P L+ ++TEG +  W K  GD + + E++V +E+DK  ++V +  DG+L  I+  E
Sbjct: 2   EIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE 61

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G++   G  + IL E              A AA PA                    A + 
Sbjct: 62  GDTVESGQVLAILEE-----------GNDATAAPPAKSG------EEKEETPAASAAAAP 104

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
            +   +   +P A++L K+H +D+++V GTG  GR+T ED+ K              APA
Sbjct: 105 TAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKT-----------EAPA 153

Query: 240 ALPKPAPAAAPAAPLLPGSTV--VPFTTMQAAVSKNMIES----LSVPTF-RVGYPIITD 292
           +  +PAPAAA  AP         V  T ++  +++ + E+      + TF  V    + +
Sbjct: 154 SAQQPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVME 213

Query: 293 ALDALYEKV--KPKGVTM--TALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAV 348
            L   Y++   K  GV +   +   KA   AL + P VNA   DG    Y    +I+VAV
Sbjct: 214 -LRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEI-DGDDIVYKDYYDISVAV 271

Query: 349 AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR 408
           + + GL+ PV+++AD++    + ++  +L +KAR  +L   +   GTFT++N G+FG   
Sbjct: 272 STDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLM 331

Query: 409 FDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFS 468
              I+ P Q AI+ +   K   VA  +G   ++  M + ++ DHR+I G +   FL T  
Sbjct: 332 STPIINPPQSAILGMHGIKERPVA-VNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIK 390

Query: 469 KIVENPESLTL 479
           +++E+P  L L
Sbjct: 391 ELLEDPRRLLL 401

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  189 bits (482), Expect = 3e-55
 Identities = 139/447 (31%), Positives = 213/447 (47%), Gaps = 72/447 (16%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P L  ++TE  I +W K  GD + + E +V +E+DK  ++V     G+L+ I+  E
Sbjct: 4   EIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE 63

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G++  VG  +G + E            A+AGAAA A+         A +   P +   +A
Sbjct: 64  GDTVTVGQVLGRIDE-----------GAAAGAAAAAAAA------AAAAAAAPAQAQAAA 106

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
            +       +P A+KL  ++ +D ++V GTG  GR+T EDV  A   A +   AP+A  A
Sbjct: 107 AAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAA---APAAPAA 163

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDA-LDALY 298
           A P  APA   A P       VP T ++  +++ ++E+ +           T A L    
Sbjct: 164 AAPAAAPAPLGARP----EERVPMTRLRKTIAERLLEAQN-----------TTAMLTTFN 208

Query: 299 EKVKPKGVTMTALLA------------------------KAAAMALVQHPVVNASCKDGK 334
           E      V MT ++                         KA   AL ++P VNAS  DG 
Sbjct: 209 E------VDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASI-DGD 261

Query: 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSG 394
              Y+   +I +AV    GL+ PVL+DAD+L    + +K  EL +KAR  +L   E   G
Sbjct: 262 DIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGG 321

Query: 395 TFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK--PTVVADADGFFGVKSKMLVNVTADH 452
           TFT++N G+FG      I+ P Q AI+ +   K  P  V   +G   ++  M + ++ DH
Sbjct: 322 TFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV---NGQIVIRPMMYLALSYDH 378

Query: 453 RIIYGADLAAFLQTFSKIVENPESLTL 479
           RII G +   FL T  +++E+PE L L
Sbjct: 379 RIIDGKEAVGFLVTIKELLEDPERLLL 405

Length = 407

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  187 bits (476), Expect = 4e-53
 Identities = 148/443 (33%), Positives = 215/443 (48%), Gaps = 31/443 (6%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E+ MP L  ++TEG + SW+K+ GD +   E ++ V +DK D ++ +   G L  I  PE
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187

Query: 120 GESAPVGAAIGILAETEA-------EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP 172
            ++  VG  + I+ +  A       E A A ++A S  A  PA+    + P P    P P
Sbjct: 188 DDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAP 247

Query: 173 KKVAESAPSGPRKTVA-----TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIA 227
            K A  A + P  +       TP  +KL K   VD+++V GTG  GRI  +DV  AA  A
Sbjct: 248 AKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAA 307

Query: 228 PSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAA-----VSKNMIESLSVPT 282
                A  AAPAA   PA  AA A P  P +  +  TT +        +   IESL    
Sbjct: 308 EEARAAA-AAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTIESLQTSA 366

Query: 283 -FRVGYPIITDALDALYEKVKP-----KGVTMTAL--LAKAAAMALVQHPVVNAS-CKDG 333
                + +    + AL  + K       GV +T L    +A   AL  HP VNAS   + 
Sbjct: 367 QLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAET 426

Query: 334 KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNS 393
           K  TY+   ++ +AV    GL+ PV+ +A  L L  L++   +L  +AR  +L+P E + 
Sbjct: 427 KEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDELSG 486

Query: 394 GTFTLSNLGMFGVDRFDAILPPGQGAIMAVGA--SKPTVVADADGF--FGVKSKMLVNVT 449
           GTFT++N+G  G      IL P Q AI+  GA   +P V+ D DG     ++S   + +T
Sbjct: 487 GTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYLPLT 546

Query: 450 ADHRIIYGADLAAFLQTFSKIVE 472
            DHR++ GAD   FL T  K +E
Sbjct: 547 YDHRLVDGADAGRFLTTIKKRLE 569

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  187 bits (476), Expect = 1e-52
 Identities = 122/455 (26%), Positives = 193/455 (42%), Gaps = 52/455 (11%)

Query: 54  VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113
             + ++++ +P +     E ++   +   GD +   +S++ VE DKA M+V   + G + 
Sbjct: 202 AAAGVKDVNVPDIGGD--EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVK 259

Query: 114 AIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTS-TPVPAVSPPEP 172
            I V  G+    G+ I        EV  A   AA A   A A  P  +    PA +P   
Sbjct: 260 EIKVNVGDKVKTGSLIMRF-----EVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK 314

Query: 173 KKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSV 232
            +             ATP  ++L ++  V++  V GTG  GRI  EDV+     A     
Sbjct: 315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDA---VK 371

Query: 233 APSAAPAALPKPAPAAAPAAPLLPGSTV----------VPFTTMQAAVSKNMIESL---- 278
              AAPAA    A A      LLP   V          V    +Q     N+  +     
Sbjct: 372 RAEAAPAA----AAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIP 427

Query: 279 -----------SVPTFRVGYPIITDALDALYEKVKPKGVTMTAL--LAKAAAMALVQHPV 325
                       +  FR          +A  EK +  GV +T L  + KA A AL Q P 
Sbjct: 428 HVTQFDKADITELEAFRK-------QQNAEAEK-RKLGVKITPLVFIMKAVAAALEQMPR 479

Query: 326 VNAS-CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK 384
            N+S  +DG+  T    +NI +AV    GL+ PV +D +K  +  LS++  ++ +KAR  
Sbjct: 480 FNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDG 539

Query: 385 QLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKM 444
           +L   +   G FT+S++G  G   F  I+   + AI+ V  S    V +    F  +  +
Sbjct: 540 KLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKE-FAPRLML 598

Query: 445 LVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
            ++++ DHR+I GAD A F+   +  + +   L L
Sbjct: 599 PLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633

Length = 633

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  165 bits (419), Expect = 4e-46
 Identities = 118/421 (28%), Positives = 188/421 (44%), Gaps = 32/421 (7%)

Query: 72  EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131
           E +++ W   EGD + + + +  V+SDKA +++ + Y G +A I    G+   VG     
Sbjct: 12  ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGET--- 68

Query: 132 LAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSG--PRKTVAT 189
           L +   E +Q               H  + + +          +AES   G      ++T
Sbjct: 69  LLKIMVEDSQ---------------HLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLST 113

Query: 190 PYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA---GIAPSKSVAPSAAPAALPKPAP 246
           P  + L KQ+ +D+N ++GTG  GR+  EDV K A   G+    S A  A  A   + + 
Sbjct: 114 PAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFST 173

Query: 247 AAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDAL----DALYEKVK 302
           + +           +P    Q A+ K M  +  VP F     I  DAL     +  E   
Sbjct: 174 SVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNT 233

Query: 303 PKGVTMTAL--LAKAAAMALVQHPVVNASCKDGKSF--TYNANINIAVAVAINGGLITPV 358
              V  T L  L K+ +MAL ++P++N SC + ++       + NI VA+A   GL+ P 
Sbjct: 234 DPTVKHTFLPFLIKSLSMALSKYPLLN-SCFNEETSEIRLKGSHNIGVAMATEHGLVVPN 292

Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
           +++   L L  ++++   L   A   +L P +   GT TLSN+G  G      +L   + 
Sbjct: 293 IKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEV 352

Query: 419 AIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT 478
           AI+A+G  +       DG     S M V + ADHR++ GA +A F   +   VE PE L 
Sbjct: 353 AIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLM 412

Query: 479 L 479
           L
Sbjct: 413 L 413

Length = 416

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  156 bits (396), Expect = 5e-42
 Identities = 121/438 (27%), Positives = 197/438 (44%), Gaps = 19/438 (4%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
           S ++E+ +P +   + +  ++  +   GD +S  +S++ +ESDKA M+V     G++ ++
Sbjct: 114 SGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172

Query: 116 VVPEGESAPVGAAIGIL-AETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKK 174
            V  G+S P G  I  L              +A   A +PA+        PA +  +   
Sbjct: 173 KVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPA 232

Query: 175 VAESAPSGPRKTV-ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVA 233
             ++    P K   A P  ++L ++  VD+++V GTG  GRI  EDV++     PS    
Sbjct: 233 PQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVK-EPSVRAQ 291

Query: 234 PSAAPAALPKPAPAAAPAAPLLPGSTV--VPFTTMQAAVSKNMIES-LSVP-TFRVGYPI 289
            +AA AA   P     P         V  V  + ++     N+  +   +P         
Sbjct: 292 AAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKAD 351

Query: 290 ITD------ALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCK-DGKSFTYNANI 342
           IT+        +A  EK   K +T+  +L KA A AL + P  NAS    G+       +
Sbjct: 352 ITEMEAFRKQQNAAVEKEGVK-LTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYV 410

Query: 343 NIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG 402
           NI VAV    GL+ PV++D D+  +  L+ +  +L +KAR  +L P E     FT+S+LG
Sbjct: 411 NIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLG 470

Query: 403 MFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKML-VNVTADHRIIYGADLA 461
             G   F  I+   + AI+ V  S    V +   F      ML ++++ DHR+I GAD A
Sbjct: 471 GIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEF--EPRLMLPLSLSYDHRVIDGADAA 528

Query: 462 AFLQTFSKIVENPESLTL 479
            F     + + +   L L
Sbjct: 529 RFTTYICESLADIRRLLL 546

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score =  151 bits (384), Expect = 7e-42
 Identities = 97/301 (32%), Positives = 164/301 (54%), Gaps = 19/301 (6%)

Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAA 248
           +P AK++  +H +    + GTG  G+I  +DV   A +  +       +PA + K     
Sbjct: 52  SPLAKRIALEHNIAWQEIQGTGHRGKIMKKDV--LALLPENIENDSIKSPAQIEKVEEVP 109

Query: 249 APAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPI-ITDALDALYEKV----- 301
               P       +P T M+  +++ M+ES L+ PTF + Y + +T+ L AL +KV     
Sbjct: 110 DNVTPY-GEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEML-ALRKKVLEPIM 167

Query: 302 --KPKGVTMTALLAKAAAMALVQHPVVNAS-CKDGKSFTYNANINIAVAVAINGGLITPV 358
               K  T+T LL+ A    L++HP +NAS  +DGK+   +  +N+A+AV ++ GL+TPV
Sbjct: 168 EATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPV 227

Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
           + +A+K+ L  L   +K+++ +    +L P E  + TFT+SNLGMFGV  F  I+     
Sbjct: 228 VYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNS 287

Query: 419 AIMAVGAS--KPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPES 476
           AI+ V ++  KP VV   +G   ++  M + +T DHR++ G   A F++   +++E P S
Sbjct: 288 AILGVSSTIEKPVVV---NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPIS 344

Query: 477 L 477
           +
Sbjct: 345 M 345

Length = 347

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  142 bits (359), Expect = 1e-37
 Identities = 122/467 (26%), Positives = 193/467 (41%), Gaps = 87/467 (18%)

Query: 38  SPSGSSSSRSRR--------RIFIVQSK----IREIFMPALSSTMTEGKIVSWIKSEGDV 85
               S     RR              SK    I+ I +P +  +++EG +V W K  GD 
Sbjct: 12  PLLSSVKGMFRRFSLRKLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDY 71

Query: 86  LSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAK 145
           + + E + ++E+DK  +D+     G++  I   EG++  VGA +  +    A      A 
Sbjct: 72  VKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGA----PPAA 127

Query: 146 AASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINS 205
           A +A AAA A       P  A   P P+  A S P                         
Sbjct: 128 APAAAAAAKAEKTTPEKPKAA--APTPEPPAASKP------------------------- 160

Query: 206 VVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTT 265
                                 P  +  P   PA   KP P   P A   P  T VP + 
Sbjct: 161 ---------------------TPPAAAKP-PEPAPAAKPPP--TPVARADPRETRVPMSR 196

Query: 266 MQAAVSKNMIESLS----VPTFRVGYPIITDALDALYEKVKPK-----GVT--MTALLAK 314
           M+  +++ +  S +    + TF         AL  L ++ K       GV     +   K
Sbjct: 197 MRQRIAERLKASQNTCAMLTTFN---ECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVK 253

Query: 315 AAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKW 374
           A+ +AL + P+VNA   DG    Y   ++I+VAVA   GL+ PV+++ +      + ++ 
Sbjct: 254 ASTIALKKMPIVNAYI-DGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKEL 312

Query: 375 KELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGA--SKPTVVA 432
            +L EKAR+ +L   +   GTFT+SN G+FG      I+ P Q AI+ + A   +P VV 
Sbjct: 313 ADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVG 372

Query: 433 DADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           +      ++  M + +T DHR+I G D   FL+    ++E+P  + L
Sbjct: 373 NE---IVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLL 416

Length = 418

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score =  117 bits (295), Expect = 1e-29
 Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 26/311 (8%)

Query: 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE---KAAGIAPSKSVAPSAAPAAL 241
           K +ATP A+ L K+  +DI+ + G+G  G+I  EDVE   K+   AP+ + A S + A  
Sbjct: 1   KILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQ 60

Query: 242 PKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDA----- 296
                A A A P L G        ++ A+++ M  S S     V Y  + + +D      
Sbjct: 61  AAKTAAPAAAPPKLEGK-REKVAPIRKAIARAMTNSWS----NVAYVNLVNEIDMTKLWD 115

Query: 297 LYEKVKPK-----GVTMTAL--LAKAAAMALVQHPVVNASCKDGKS-FTYNANINIAVAV 348
           L + VK       GV +T L  +AKA  +AL + P+  A   +  S   Y   +N+ +AV
Sbjct: 116 LRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAV 175

Query: 349 AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR 408
               GL+ PV+++A KL +  ++++   L + AR ++++P E   G+FT++N G  G   
Sbjct: 176 DTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235

Query: 409 FDAILPPGQGAIMAVGA--SKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQT 466
              ++   + AI  VGA   K  V    +G       M + V ADHR I GA +  F   
Sbjct: 236 GVPVINYPELAIAGVGAIIDKAIVK---NGQIVAGKVMHLTVAADHRWIDGATIGRFASR 292

Query: 467 FSKIVENPESL 477
             +++E PE L
Sbjct: 293 VKELLEKPEIL 303

Length = 306

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score =  116 bits (294), Expect = 1e-27
 Identities = 96/362 (26%), Positives = 142/362 (39%), Gaps = 89/362 (24%)

Query: 142 AKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKV 201
           A     S  A   A+    +      + P  K  A  AP+ P                  
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP------------- 80

Query: 202 DINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVV 261
                                AA   P+ + A +AAPAA P  A AAAPAA       V 
Sbjct: 81  ---------------------AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA-VEDEVT 118

Query: 262 PFTTMQAAVSKNMIESLSVPTF--------------RVGYPIITDALDALYEKVKPKG-- 305
           P     AAV+KNM  SL VPT               R+   +I + L       + +G  
Sbjct: 119 PLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRI---VINNHL------KRTRGGK 169

Query: 306 VTMTALLAKAAAMALVQHPVVNAS--CKDGK-SFTYNANINIAVAVAING-----GLITP 357
           V+ T L+  A   AL   P +N      DGK +    A++N+ +A+ +        L+ P
Sbjct: 170 VSFTHLIGYALVQALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVP 229

Query: 358 VLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG----VDRFDAIL 413
            ++ A+ +D       ++++V +AR  +L   ++   T +L+N G  G    V R    L
Sbjct: 230 AIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPR----L 285

Query: 414 PPGQGAIMAVGA---------SKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFL 464
             GQGAI+ VGA         +    +A+     G+   M +  T DHRII GA+   FL
Sbjct: 286 MKGQGAIIGVGAMEYPAEFQGASEERLAEL----GISKVMTLTSTYDHRIIQGAESGEFL 341

Query: 465 QT 466
           +T
Sbjct: 342 RT 343

Length = 1228

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  101 bits (255), Expect = 2e-26
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI MP L  +MTEG IV W+  EGD + +G+ +  VE+DKA ++VE    G+LA I+V E
Sbjct: 2   EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEE 61

Query: 120 GESAPVGAAIGIL 132
           G++ PVG  I ++
Sbjct: 62  GDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  110 bits (275), Expect = 4e-26
 Identities = 109/431 (25%), Positives = 182/431 (42%), Gaps = 73/431 (16%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +  ++T+G + +++K  G+ +   E++  +E+DK  +D+ +   G++   +V E
Sbjct: 93  EAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKE 152

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G++   G  + I++++E   +Q            P S  +  T  P  SPP   K     
Sbjct: 153 GDTVEPGTKVAIISKSEDAASQV----------TP-SQKIPETTDPKPSPPAEDKQKPKV 201

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
            S P                                              K  APS+ P 
Sbjct: 202 ESAP-------------------------------------------VAEKPKAPSSPP- 217

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGY---------PII 290
             P    A  P  P       VP T ++  V+  + +S +       +          + 
Sbjct: 218 --PPKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLR 275

Query: 291 TDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
           +   DA YEK   K   M+  + KAA  AL   PVVNA   DG    Y   ++I++AV  
Sbjct: 276 SQYKDAFYEKHGVKLGLMSGFI-KAAVSALQHQPVVNAVI-DGDDIIYRDYVDISIAVGT 333

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
           + GL+ PV++ ADK++   + +    L +KA    +   E   G+FT+SN G++G     
Sbjct: 334 SKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLIST 393

Query: 411 AILPPGQGAIMAVGA--SKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFS 468
            I+ P Q AI+ + +  S+P VV    G    +  M V +T DHR+I G +   FL+   
Sbjct: 394 PIINPPQSAILGMHSIVSRPMVVG---GSVVPRPMMYVALTYDHRLIDGREAVYFLRRVK 450

Query: 469 KIVENPESLTL 479
            +VE+P+ L L
Sbjct: 451 DVVEDPQRLLL 461

Length = 463

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  104 bits (261), Expect = 5e-24
 Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI MPALS TM EG +  W+K EGD +  G+ +  +E+DKA M+VE   +G L  I+VPE
Sbjct: 4   EILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPE 63

Query: 120 G-ESAPVGAAIGILA---ETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV 175
           G E   V   I +L    E+ ++   A A AA A AAAPA+    +    A +P  P   
Sbjct: 64  GTEGVKVNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAP 123

Query: 176 AESAPSGPRKTVATPYAK 193
           A    + P     T    
Sbjct: 124 AAEVAADPDIPAGTEMVT 141

Length = 464

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 91.5 bits (228), Expect = 4e-20
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           I  I MP    +MTEGK+  W+  EGD + KG+ ++ VE+DK   +VE    G L   V 
Sbjct: 2   ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVA 61

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            EGE+ PVGA + ++A  +AEV+ A+  A  A  A                 PE     +
Sbjct: 62  QEGETLPVGALLAVVA--DAEVSDAEIDAFIAPFARRF-------------APEGIDEED 106

Query: 178 SAPSGPRKTV 187
           + P+  +  +
Sbjct: 107 AGPAPRKARI 116

Length = 371

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 82.9 bits (206), Expect = 6e-17
 Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 44/241 (18%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
             E  +P +   + E +++ W+  EGD + + + +V VE+DKA M++ +   G++  I V
Sbjct: 2   AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKV 60

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP----- 172
             G++  VG  +  + E     A A A AA+A  AA A+           +         
Sbjct: 61  KVGDTVSVGGLL-AVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGV 119

Query: 173 --------------------KKVAES-APSGPRKTVAT---------PYAKKLLKQH-KV 201
                                KV ++        TV T         P A  + +   KV
Sbjct: 120 VEVKVPDIGEITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKV 179

Query: 202 DINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVV 261
                VG+          +E AA    + +   +AAPAA    APA APAA   P +   
Sbjct: 180 GDKVSVGSLLV------VIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAP 233

Query: 262 P 262
            
Sbjct: 234 A 234

Length = 547

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 34/213 (15%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P + +   E ++   +   GD +   +S++ VE DKA M+V +   G++  I V  
Sbjct: 4   EIKVPDIGAD--EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKV 61

Query: 120 GESAPVGAAIGILAET----EAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPK-- 173
           G+    GA I I        +A  AQA+ K  +A AAAPA+       VP +   E +  
Sbjct: 62  GDKVETGALIMIFESADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVHVPDIGSDEVEVT 121

Query: 174 --------KVAESAP----SGPRKT--VATPYAKKLLKQHKVDINSVVGTGPFGRITPED 219
                    V          G + +  V  P+A   +K+ KV++   V TG         
Sbjct: 122 EILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGT-VKEIKVNVGDKVSTG--------S 172

Query: 220 VEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAA 252
           +     +A     AP+AAPAA    APAAAPAA
Sbjct: 173 LIMVFEVAGE---APAAAPAAAEAAAPAAAPAA 202

Length = 633

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 68.9 bits (168), Expect = 2e-12
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 63  MPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES 122
           MPAL  ++TEG + SW+K+ GD +   E ++ V +DK D ++ +   G+L  I  PE ++
Sbjct: 7   MPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPEDDT 66

Query: 123 APVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSG 182
             VG  + I+ E   E     A AA    AAP        P PA   P     A +AP  
Sbjct: 67  VEVGGVLAIIGE-PGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAP-----APAAPQA 120

Query: 183 PRKTVATP 190
                AT 
Sbjct: 121 GGSGEATE 128

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 28/220 (12%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
           +  +++ +P + S   E ++   +   GD +   +S++ VE DKA M+V   + G +  I
Sbjct: 103 AAAKDVHVPDIGSD--EVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI 160

Query: 116 VVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE---- 171
            V  G+    G+ I +    E       A  A+A AAAPA+ P  +  V  V+ P+    
Sbjct: 161 KVNVGDKVSTGSLIMVF---EVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPDIGGD 217

Query: 172 -----------PKKVAESAP----SGPRKT--VATPYAKKLLKQHKVDINSVVGTGPF-G 213
                        KV          G + +  V  P+A   +K+ KV++   V TG    
Sbjct: 218 EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGT-VKEIKVNVGDKVKTGSLIM 276

Query: 214 RITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAP 253
           R   E    AA  A  ++ AP+ A A    PA A A  A 
Sbjct: 277 RFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAE 316

Length = 633

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI  P +  ++ EG    W+   GD +  G+ +  VE+ K +M++     G++  I+V E
Sbjct: 2   EIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKE 60

Query: 120 GESAPVGAAIGIL 132
           G++  VG  +  +
Sbjct: 61  GDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 34/244 (13%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P +     EG+++  +   GD +  G+S++ +ESDKA M+V +   GI+  I V  
Sbjct: 2   EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKA-----ASAGAAAPASH-PVTSTPVPAVSPPEPK 173
           G++ PVG  I  L       AQA+AK       +AGA APA+          +    E  
Sbjct: 61  GDTLPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVT 120

Query: 174 ---------------------KVAESAP----SGPRKTVATPY-AKKLLKQHKVDINSVV 207
                                 V+           + ++  P  A  ++K  KV +   V
Sbjct: 121 VPDIGDIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSV 180

Query: 208 GTGPF-GRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTM 266
            TG     ++      A   AP+ +   + +PAA      AA  AA     +     T  
Sbjct: 181 PTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQN 240

Query: 267 QAAV 270
            A V
Sbjct: 241 PAKV 244

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 21/73 (28%), Positives = 37/73 (50%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
            I +P L+  + +G +V W+K  GD + KG+ +  +E+ KA  DVE    G +  ++V E
Sbjct: 1   TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60

Query: 120 GESAPVGAAIGIL 132
           G        +  +
Sbjct: 61  GTKVEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
            +  A+P A+KL  +  +D++ V GTGP GRIT EDV  
Sbjct: 1   GRVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.5 bits (123), Expect = 8e-07
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 2/154 (1%)

Query: 118  PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            P  E AP               A+  + A  A  A PA     +TP     P  P   A 
Sbjct: 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765

Query: 178  SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
                 P    A    ++L +     ++    + P     P D   AA +AP+ ++ P+A+
Sbjct: 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW-DPADP-PAAVLAPAAALPPAAS 2823

Query: 238  PAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVS 271
            PA    P  +A P AP  P     P   +  +V+
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 36/139 (25%), Positives = 42/139 (30%), Gaps = 15/139 (10%)

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
              A   A     A  EA    A   A +A A APA+ P  +   PA  P      A  A
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA----AAPPA 424

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
           P       A P A        V +             P        +A    VAP  A A
Sbjct: 425 PVAAPAAAA-PAAAPAAAPAAVALAPA----------PPAQAAPETVAIPVRVAPEPAVA 473

Query: 240 ALPKPAPAAAPAAPLLPGS 258
           +      AA  AA L P  
Sbjct: 474 SAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
            +++ M  G +V  +  EGD +  G+ + V+E+ K + +V     G++  I+V EG+   
Sbjct: 1   EVTAPMP-GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVE 59

Query: 125 VGAAIGIL 132
            G  + ++
Sbjct: 60  AGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 37/186 (19%), Positives = 52/186 (27%), Gaps = 9/186 (4%)

Query: 113 AAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTS---TPVPAVSP 169
           A    P   +A    A      + A  A A A+ ASA     A  P  +    P  A  P
Sbjct: 405 APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

Query: 170 ----PEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI--TPEDVEKA 223
               P P   A +A        A P           ++     +    +    P      
Sbjct: 465 AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524

Query: 224 AGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTF 283
           +   P+ +    A     P PA A AP A       V P     +A     +     P  
Sbjct: 525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPAL 584

Query: 284 RVGYPI 289
               P+
Sbjct: 585 AARLPV 590

Length = 700

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 34/155 (21%), Positives = 46/155 (29%), Gaps = 6/155 (3%)

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
             G  AP G          A    A    A+A   A A   VT+    A +   PK  A 
Sbjct: 362 VTGGGAPGGGV----PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA 417

Query: 178 SAPSGPRKTVA--TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPS 235
           +A +      A   P A         D ++ V      R + +         P      +
Sbjct: 418 AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA 477

Query: 236 AAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAV 270
           +APA+   P  A  PA      S   P     A  
Sbjct: 478 SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARA 512

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 43/154 (27%), Gaps = 6/154 (3%)

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
             +   GA     A   A V  +   A +A   A  +         A +       A  A
Sbjct: 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPA 431

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
           P                   K +  +   +         D +  A    + + A  A P 
Sbjct: 432 PPATADRGDDAADGDAPVPAKANARASADSRC----DERDAQPPADSGSASAPASDAPPD 487

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKN 273
           A  +PAP AA  +        VP     AA S+ 
Sbjct: 488 AAFEPAPRAAAPSA--ATPAAVPDARAPAAASRE 519

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 39/156 (25%), Positives = 47/156 (30%), Gaps = 21/156 (13%)

Query: 100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPV 159
           A  D      G+LA +   E      G A    A   +  A A A A +  AAAPA+   
Sbjct: 367 ASDDER----GLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA 422

Query: 160 TSTPV--PAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP 217
            +          P P     S         A                      P  +  P
Sbjct: 423 PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP--------------AAAPSAQPAP 468

Query: 218 EDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAP 253
                    A   + AP AAPA    PA  AAPAAP
Sbjct: 469 APAAAPEPTAAP-APAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 28/139 (20%), Positives = 35/139 (25%), Gaps = 9/139 (6%)

Query: 113 AAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP 172
           AA        AP  A          + A        A A A AS         A  P + 
Sbjct: 415 AAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADS 474

Query: 173 KKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSV 232
              +  A   P      P A           ++           P    +    A +   
Sbjct: 475 GSASAPASDAP------PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528

Query: 233 APSAAPAALPKPAPAAAPA 251
           AP A P     PA AA  A
Sbjct: 529 APEARPPT---PAAAAPAA 544

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 33/139 (23%), Positives = 43/139 (30%), Gaps = 23/139 (16%)

Query: 126 GAAIGILAETEAEV--AQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGP 183
               G+LA  E           A +  AAAP++        PA +   P   A  AP+  
Sbjct: 369 DDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAA 428

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPK 243
            +    P                          P      A    + S  P+AAP+A P 
Sbjct: 429 PQPAPAPAPAP---------------------APPSPAGNAPAGGAPSPPPAAAPSAQPA 467

Query: 244 PAPAAAPAAPLLPGSTVVP 262
           PAPAAAP     P      
Sbjct: 468 PAPAAAPEPTAAPAPAPPA 486

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 37/151 (24%), Positives = 48/151 (31%), Gaps = 19/151 (12%)

Query: 120 GESAPVGAAIGILAET------EAEVAQAKAKAASAGAAAPASHPVTSTP--VPAVSPPE 171
           G + P  AA   +A+        A  A A A   +A AAAPA+          PA   P 
Sbjct: 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA 429

Query: 172 PKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKS 231
           P+ +A +  +  R     P                    P     P         A + +
Sbjct: 430 PEALAAARQASARGPGGAPAPA-----------PAPAAAPAAAARPAAAGPRPVAAAAAA 478

Query: 232 VAPSAAPAALPKPAPAAAPAAPLLPGSTVVP 262
               AAPAA P PA    P    LP     P
Sbjct: 479 APARAAPAAAPAPADDDPPPWEELPPEFASP 509

Length = 700

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
            ++S M  G +       GD +  G+++ ++E+ K + ++E   DG++  I+V  G+   
Sbjct: 72  QVTSPMV-GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVE 130

Query: 125 VGAAIGILA 133
            G  + ++ 
Sbjct: 131 YGDPLAVIE 139

Length = 140

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 28/160 (17%), Positives = 37/160 (23%), Gaps = 7/160 (4%)

Query: 110  GILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSP 169
                          P    +            A+A +        A+ P   +      P
Sbjct: 2642 PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADP 2701

Query: 170  PEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPS 229
            P P    E AP         P      +Q            P     P      A     
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQ-------ASPALPAAPAPPAVPAGPATPGGP 2754

Query: 230  KSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAA 269
               A     A  P PAP AAPAA      T     ++  +
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 33/158 (20%), Positives = 40/158 (25%), Gaps = 1/158 (0%)

Query: 112 LAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE 171
                V        G        +     +A   AA A  AAPA+               
Sbjct: 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASA 641

Query: 172 PKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKS 231
                 +AP    K VA P A                  P     P      AG AP++ 
Sbjct: 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 232 VA-PSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQA 268
              P+A P A     PAA P       S   P      
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPV 739

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 35/151 (23%), Positives = 43/151 (28%), Gaps = 6/151 (3%)

Query: 125 VGAAIGILAETEAEVAQAKAKAASAGAAAPAS------HPVTSTPVPAVSPPEPKKVAES 178
           +   +G   + EA V  A   A   G  APAS          + P    +P  P     +
Sbjct: 574 LAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAA 633

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
           A          P         K         G  G          A   P+ + A  AAP
Sbjct: 634 AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP 693

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAA 269
           A      PA APAA    G    P      A
Sbjct: 694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724

Length = 824

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 39.2 bits (90), Expect = 0.003
 Identities = 44/142 (30%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 134 ETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES---APSGPRKTVATP 190
           E  A  A AK KAA+  AAAP+         PA +   P K A     A + P K  A P
Sbjct: 191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAP 250

Query: 191 YAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAP 250
            AK      K          P  +      + AA   P+K+ AP A  AA P  A AA  
Sbjct: 251 -AKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA--PPAKAAAPPAKAAAAPAKAAAAPA 307

Query: 251 AAPLLPGSTVVPFTTMQAAVSK 272
            A   P     P     A  +K
Sbjct: 308 KAAAAPAKAAAPPAKAAAPPAK 329

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	99.97
PRK13757	219	chloramphenicol acetyltransferase; Provisional	99.97
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	99.94
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.77
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.76
PRK06748	83	hypothetical protein; Validated	99.67
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.58
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.55
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.54
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.53
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.49
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.48
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.47
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.42
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.41
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.39
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.36
PRK07051	80	hypothetical protein; Validated	99.36
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.34
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.31
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.3
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.3
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.28
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.25
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.2
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.08
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.07
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.06
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.06
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.98
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.93
PRK12999	1146	pyruvate carboxylase; Reviewed	98.89
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.89
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.69
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.31
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.3
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.05
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	98.0
PRK09783	409	copper/silver efflux system membrane fusion protei	97.96
PRK00624	114	glycine cleavage system protein H; Provisional	97.93
PRK13380	144	glycine cleavage system protein H; Provisional	97.92
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.9
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.85
PRK01202	127	glycine cleavage system protein H; Provisional	97.83
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.81
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.74
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.64
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.59
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.59
PRK12784	84	hypothetical protein; Provisional	97.57
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.56
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.51
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	97.51
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.46
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.46
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.33
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.28
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.22
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.18
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.1
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.02
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	96.95
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.93
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	96.58
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.54
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	96.41
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.41
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	96.4
PRK06748	83	hypothetical protein; Validated	95.9
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	95.9
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	95.65
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	95.56
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	95.55
PF07247	480	AATase: Alcohol acetyltransferase; InterPro: IPR01	95.51
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.4
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.4
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	95.16
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	95.03
PF13437	105	HlyD_3: HlyD family secretion protein	94.99
COG3608	331	Predicted deacylase [General function prediction o	94.8
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	94.72
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	94.54
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	94.22
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	94.22
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	94.17
PRK07051	80	hypothetical protein; Validated	93.64
PF00529	305	HlyD: HlyD family secretion protein the correspond	93.57
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.54
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	93.35
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	93.3
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	93.12
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	92.98
PRK09859	385	multidrug efflux system protein MdtE; Provisional	92.92
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	92.84
PF00529	305	HlyD: HlyD family secretion protein the correspond	92.32
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	91.99
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	91.8
PRK11578	370	macrolide transporter subunit MacA; Provisional	91.79
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	91.53
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	91.53
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.5
PRK15136	390	multidrug efflux system protein EmrA; Provisional	91.46
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	91.37
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	91.09
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	90.9
PF00668	301	Condensation: Condensation domain; InterPro: IPR00	90.78
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	90.7
PRK03598	331	putative efflux pump membrane fusion protein; Prov	90.65
PRK05035	695	electron transport complex protein RnfC; Provision	90.54
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.53
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	90.34
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	90.18
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	90.13
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	89.59
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	89.58
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	89.31
PRK14042	596	pyruvate carboxylase subunit B; Provisional	88.91
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	88.62
PRK09783	409	copper/silver efflux system membrane fusion protei	88.34
TIGR02946	446	acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b	88.25
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	87.93
COG4072	161	Uncharacterized protein conserved in archaea [Func	87.52
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	87.49
PRK09439	169	PTS system glucose-specific transporter subunit; P	87.3
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	87.3
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	87.27
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	87.24
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	86.99
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	86.41
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	86.04
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	85.96
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	85.81
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	85.53
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	85.19
PRK14040	593	oxaloacetate decarboxylase; Provisional	84.9
PF13437	105	HlyD_3: HlyD family secretion protein	84.39
PRK05305	206	phosphatidylserine decarboxylase; Provisional	84.15
PRK09294	416	acyltransferase PapA5; Provisional	84.0
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	83.88
PRK09282	592	pyruvate carboxylase subunit B; Validated	83.29
COG2190	156	NagE Phosphotransferase system IIA components [Car	82.64
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	82.5
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	81.78
PRK12784	84	hypothetical protein; Provisional	80.86
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	80.06
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	80.02

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=1.8e-86  Score=689.51  Aligned_cols=395  Identities=32%  Similarity=0.477  Sum_probs=331.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~  138 (479)
                      ++|+||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|++|++.+++
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~   82 (407)
T PRK05704          3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA   82 (407)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999765432


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccchh
Q 011684          139 VAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPE  218 (479)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~  218 (479)
                      ..   . ...     +...++ ..  ..+.+.+.   .+.  .....+++||+||+||+||||||++|+|||++|||+++
T Consensus        83 ~~---~-~~~-----~~~~~~-~~--~~~~~~~~---~~~--~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~  145 (407)
T PRK05704         83 GA---A-AAA-----AAAAAA-AA--AAPAQAQA---AAA--AEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKE  145 (407)
T ss_pred             cc---c-CCC-----CCCCCC-CC--CCCCCCCC---Ccc--CCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHH
Confidence            11   0 000     000000 00  00000000   000  01123679999999999999999999999999999999


Q ss_pred             hHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHH
Q 011684          219 DVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL  297 (479)
Q Consensus       219 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~  297 (479)
                      ||++|+.......    + +++.+...  ..+........+.+|++++||+|+++|.+| +++|||+++.++|+|+|+++
T Consensus       146 DV~~~~~~~~~~~----~-~~~~~~~~--~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~  218 (407)
T PRK05704        146 DVLAALAAAAAAP----A-APAAAAPA--AAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDL  218 (407)
T ss_pred             HHHHHhhcccccC----C-CCCCCCCc--CCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHH
Confidence            9999974321110    0 00000000  000000011235689999999999999999 89999999999999999999


Q ss_pred             HHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHH
Q 011684          298 YEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL  370 (479)
Q Consensus       298 ~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei  370 (479)
                      |+++++       .++||++||+||+++||.+||+||++|+ ++++++|+++|||+||++++||++|||++++++++.||
T Consensus       219 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eI  297 (407)
T PRK05704        219 RKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASID-GDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEI  297 (407)
T ss_pred             HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEc-CCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHH
Confidence            999874       1699999999999999999999999996 45899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEe
Q 011684          371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTA  450 (479)
Q Consensus       371 ~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~  450 (479)
                      +++++++.+++|+|+|+++|+.||||+|||+|+||+.+|+||+|+||+|||++|++.++++++ ||+++++++|+|+|+|
T Consensus       298 a~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls~  376 (407)
T PRK05704        298 EKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALSY  376 (407)
T ss_pred             HHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999986 7999999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          451 DHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       451 DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |||+|||+++|+||++|+++||+|+.||+
T Consensus       377 DHRviDGa~aa~Fl~~l~~~le~p~~ll~  405 (407)
T PRK05704        377 DHRIIDGKEAVGFLVTIKELLEDPERLLL  405 (407)
T ss_pred             chhhhCcHHHHHHHHHHHHHhhCHHHHhh
Confidence            99999999999999999999999998764

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=6.2e-86  Score=683.98  Aligned_cols=393  Identities=29%  Similarity=0.473  Sum_probs=330.7

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~  138 (479)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+||+||+++||+||.+|+|.++++++|+.|++|++|++|++.++.
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~   80 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA   80 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999754321


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccchh
Q 011684          139 VAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPE  218 (479)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~  218 (479)
                      .   ..  .. +   ++ .++.+.....+  . .    +.+...++++.+||+||+||+|+||||++|+|||++|||+++
T Consensus        81 ~---~~--~~-~---~~-~~~~~~~~~~~--~-~----~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~  143 (403)
T TIGR01347        81 T---AA--PP-A---KS-GEEKEETPAAS--A-A----AAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKE  143 (403)
T ss_pred             c---cc--cc-c---cc-cCCCCCCCCCC--C-C----CCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHH
Confidence            0   00  00 0   00 00000000000  0 0    000111235689999999999999999999999999999999


Q ss_pred             hHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHH
Q 011684          219 DVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL  297 (479)
Q Consensus       219 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~  297 (479)
                      ||++|+.......    + +++.  .+.+. +.. .....+.+|+++|||+|+++|.+| +++|||++..++|+|+|+++
T Consensus       144 DV~~~~~~~~~~~----~-~~~~--~~~~~-~~~-~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~  214 (403)
T TIGR01347       144 DIIKKTEAPASAQ----A-PAPA--AAAKA-PAN-FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMEL  214 (403)
T ss_pred             HHHHhhhcccccC----C-CCCC--cccCC-ccc-cCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHH
Confidence            9999975311100    0 0000  00000 000 011245689999999999999999 79999999999999999999


Q ss_pred             HHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHH
Q 011684          298 YEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL  370 (479)
Q Consensus       298 ~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei  370 (479)
                      |+++++       .++||++||+||+++||.+||+||++|+ ++++++|+++|||+||++++||++|||++++++++.+|
T Consensus       215 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eI  293 (403)
T TIGR01347       215 RKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEID-GDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADI  293 (403)
T ss_pred             HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEc-CCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHH
Confidence            998874       1699999999999999999999999996 46899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEe
Q 011684          371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTA  450 (479)
Q Consensus       371 ~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~  450 (479)
                      +++++++.+++|+|+|+++|++||||+|||+|+||+.+|+||+|+||+|||++|+++++|++. ||++++|++|+|+|+|
T Consensus       294 a~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~  372 (403)
T TIGR01347       294 EKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSY  372 (403)
T ss_pred             HHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999986 7999999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          451 DHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       451 DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |||+|||+++|+||++|+++||+|+.||+
T Consensus       373 DHRviDGa~aa~Fl~~l~~~le~p~~ll~  401 (403)
T TIGR01347       373 DHRLIDGKEAVTFLVTIKELLEDPRRLLL  401 (403)
T ss_pred             cchhhChHHHHHHHHHHHHHhcCHHHHHh
Confidence            99999999999999999999999998764

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=2.3e-85  Score=694.35  Aligned_cols=421  Identities=35%  Similarity=0.524  Sum_probs=338.9

Q ss_pred             ccccceeeec---ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-
Q 011684           46 RSRRRIFIVQ---SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-  121 (479)
Q Consensus        46 ~~~~~~~~~~---~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~-  121 (479)
                      .+..|++...   ..+++|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+++.+|+|.+|++++|+ 
T Consensus        97 ~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~  176 (539)
T PLN02744         97 MQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAK  176 (539)
T ss_pred             ccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCc
Confidence            3344555444   345999999999999999999999999999999999999999999999999999999999999996 


Q ss_pred             eecCCCeEEEEecChhhHHHHHhhhhcc--CCCCCC--CCCCCCCCC--CCCCCCCCC-CCCC-CCCCCCCccccChhHH
Q 011684          122 SAPVGAAIGILAETEAEVAQAKAKAASA--GAAAPA--SHPVTSTPV--PAVSPPEPK-KVAE-SAPSGPRKTVATPYAK  193 (479)
Q Consensus       122 ~v~~G~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~--~~~~~~~~~-~~~~-~~~~~~~~~~asP~aR  193 (479)
                      .|++|++|+++.+++++...........  ....++  +.++.+...  ..+++.+.+ ...+ .+...+.++++||+||
T Consensus       177 ~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aR  256 (539)
T PLN02744        177 EIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLAR  256 (539)
T ss_pred             ccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhH
Confidence            7999999999865443321111000000  000000  000000000  000000000 0000 0011223578999999


Q ss_pred             HHHhhcCCCccccccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHH
Q 011684          194 KLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKN  273 (479)
Q Consensus       194 ~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~  273 (479)
                      |||+|+||||+.|+|||++|||+++||++|+.......      +.+.  ..  +. . .+....+++|+++|||.|+++
T Consensus       257 rLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~------~~~~--~~--~~-~-~~~~~~~~vpls~~Rk~IA~~  324 (539)
T PLN02744        257 KLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGA------TAPP--ST--DS-K-APALDYTDIPNTQIRKVTASR  324 (539)
T ss_pred             HHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhcccccc------CCCC--Cc--cc-C-CCCCccccccchhHHHHHHHH
Confidence            99999999999999999999999999999975311100      0010  00  00 0 001124568999999999999


Q ss_pred             hhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEE
Q 011684          274 MIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIA  345 (479)
Q Consensus       274 m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~  345 (479)
                      |.+| +++|||+++.++|+|+|+++|+++++       .++||++||+||+++||++||+||++|+ ++.+++|+++|||
T Consensus       325 m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~-~~~i~~~~~vnIg  403 (539)
T PLN02744        325 LLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWT-DDYIRQYHNVNIN  403 (539)
T ss_pred             HHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeec-cCcEEEeCCcceE
Confidence            9999 89999999999999999999999873       2799999999999999999999999996 4589999999999


Q ss_pred             EEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecC-CCCccceeecCCCCCceEEEeC
Q 011684          346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG-MFGVDRFDAILPPGQGAIMAVG  424 (479)
Q Consensus       346 ~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg-~~G~~~ftpii~~~~~ail~vG  424 (479)
                      +||++++||++|||++++++++.||+++++++.+++|+|+|+++|+.||||||||+| +||+.+|+||||+||+|||++|
T Consensus       404 vAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG  483 (539)
T PLN02744        404 VAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVG  483 (539)
T ss_pred             EEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcc
Confidence            999999999999999999999999999999999999999999999999999999997 8999999999999999999999


Q ss_pred             cceEEEEEc-CCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          425 ASKPTVVAD-ADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       425 ~~~~~~v~~-~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      ++++++++. .+|+++++++|+|+|+||||||||+++|+||++|+++||+|+.||+
T Consensus       484 ~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll  539 (539)
T PLN02744        484 SAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL  539 (539)
T ss_pred             cceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence            999999873 4789999999999999999999999999999999999999998875

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=3.7e-85  Score=661.51  Aligned_cols=421  Identities=43%  Similarity=0.624  Sum_probs=355.5

Q ss_pred             cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCC-CeecCCCeEEEEe
Q 011684           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILA  133 (479)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g-~~v~~G~~l~~i~  133 (479)
                      .+.++.|.||.|+.+|+||.|++|.++|||++++||+||||||||++|+++++.+|+|.+|+++|| ..|++|.+||+|.
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            689999999999999999999999999999999999999999999999999999999999999999 7999999999999


Q ss_pred             cChhhHHHHHhhhhcc-CCCCCCCCCCCCCCC--C---CCCCCCCC-CCCCCCCCCCCccccChhHHHHHhhcCCCcccc
Q 011684          134 ETEAEVAQAKAKAASA-GAAAPASHPVTSTPV--P---AVSPPEPK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSV  206 (479)
Q Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~---~~~~~~~~-~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v  206 (479)
                      +.+++++..+....+. +.+.....+++++++  .   .|.+.+.+ .+.+.....++++++||+||+||.|+|+|+++|
T Consensus       115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i  194 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI  194 (470)
T ss_pred             cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence            9999998777654421 111111111111111  1   11110000 011111222568999999999999999999999


Q ss_pred             ccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEE
Q 011684          207 VGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV  285 (479)
Q Consensus       207 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~  285 (479)
                      .||||+|||++.||++|++..........+..++.  .+  ++......++++++|+++||+.|+++|.+| ++|||||+
T Consensus       195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~--~~--~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yv  270 (470)
T KOG0557|consen  195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPP--PA--PAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYV  270 (470)
T ss_pred             cCcCCCceeehhhHHHhhcccccccccCCCccCCC--cC--ccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEE
Confidence            99999999999999999886432110000000010  00  011112234589999999999999999999 99999999


Q ss_pred             EEEEeccHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEec
Q 011684          286 GYPIITDALDALYEKVK----PKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD  361 (479)
Q Consensus       286 ~~~iDvt~l~~~~~~~k----~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~  361 (479)
                      +++++++.|+++|++++    ..++|+++|++||++.||.++|+.|++|.+++.|.++++|||+++|.+++||++|+|+|
T Consensus       271 t~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~n  350 (470)
T KOG0557|consen  271 TVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQN  350 (470)
T ss_pred             eeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhh
Confidence            99999999999999999    45899999999999999999999999998767899999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEE--cCCCeEE
Q 011684          362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVA--DADGFFG  439 (479)
Q Consensus       362 a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~--~~~G~i~  439 (479)
                      ++.+.+.+|.++++++..++|.++|.+++++||||+||||||||++.|+.|+||||.|||++|...+..|.  +.++++.
T Consensus       351 a~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~  430 (470)
T KOG0557|consen  351 ADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFS  430 (470)
T ss_pred             cccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999885  5567788


Q ss_pred             EEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          440 VKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       440 ~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      ....|+|+|++|||++||+.++|||+.|+++||||+.|||
T Consensus       431 ~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll  470 (470)
T KOG0557|consen  431 VINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL  470 (470)
T ss_pred             eeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence            9999999999999999999999999999999999999886

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=3.4e-84  Score=700.94  Aligned_cols=420  Identities=30%  Similarity=0.420  Sum_probs=331.0

Q ss_pred             eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..++|+||+||++|++|+|++|+|++||.|++||.||+||+||++++|+||++|+|.+|++++|+.|++|++|+.|++.+
T Consensus       134 ~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~  213 (590)
T TIGR02927       134 AATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG  213 (590)
T ss_pred             CceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999997544


Q ss_pred             hhHHHHHhhhhcc-CCC-CCCCCCCCCCC-----CC--CCC--CCCCC-C-CCCC-CCCCCCccccChhHHHHHhhcCCC
Q 011684          137 AEVAQAKAKAASA-GAA-APASHPVTSTP-----VP--AVS--PPEPK-K-VAES-APSGPRKTVATPYAKKLLKQHKVD  202 (479)
Q Consensus       137 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-----~~--~~~--~~~~~-~-~~~~-~~~~~~~~~asP~aR~lA~e~gid  202 (479)
                      ++........... +.. +++...+....     ..  .+.  +.... . ..+. ....+.++++||+|||||+|+|||
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvd  293 (590)
T TIGR02927       214 AAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGID  293 (590)
T ss_pred             CccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCC
Confidence            3321100000000 000 00000000000     00  000  00000 0 0000 011224678999999999999999


Q ss_pred             ccccccCCCCCccchhhHHHhhccCCCCCCCCCC-CCCCCCCCC-CCCCCCCCC--CCCCceeccchhhHHHHHHhhhc-
Q 011684          203 INSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSA-APAALPKPA-PAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIES-  277 (479)
Q Consensus       203 l~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~--~~~~~~~p~s~~r~~ia~~m~~S-  277 (479)
                      |++|.|||++|||+++||++|+.........+.+ ++...+..+ .......+.  ...++.+||++|||.|+++|++| 
T Consensus       294 l~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~  373 (590)
T TIGR02927       294 LNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREAL  373 (590)
T ss_pred             HHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHh
Confidence            9999999999999999999997532110000000 000000000 000000000  01245789999999999999999 


Q ss_pred             cCccEEEEEEEEeccHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEE
Q 011684          278 LSVPTFRVGYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVA  349 (479)
Q Consensus       278 ~~vP~~~~~~~iDvt~l~~~~~~~k~~-------~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~  349 (479)
                      +++||||++.++|+|+|++||+++|+.       ++||++||+||+++||++||.||++|++ +++|++|+++||||||+
T Consensus       374 ~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~  453 (590)
T TIGR02927       374 QASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVD  453 (590)
T ss_pred             ccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEE
Confidence            789999999999999999999999741       6899999999999999999999999964 45899999999999999


Q ss_pred             eCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEE
Q 011684          350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPT  429 (479)
Q Consensus       350 ~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~  429 (479)
                      +++||++|||++++++++.+|++++++|.+++|+|+|+++|++||||||||||+||+++|+||||+||+|||++|+++++
T Consensus       454 t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~  533 (590)
T TIGR02927       454 TDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKR  533 (590)
T ss_pred             CCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEc--CCC--eEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcc
Q 011684          430 VVAD--ADG--FFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPES  476 (479)
Q Consensus       430 ~v~~--~~G--~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~  476 (479)
                      |++.  .+|  .+.+|++|+|||+||||||||+++|+||++|+++||||..
T Consensus       534 pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~  584 (590)
T TIGR02927       534 PRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF  584 (590)
T ss_pred             EEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence            9884  234  3899999999999999999999999999999999999864

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=1.8e-83  Score=672.66  Aligned_cols=413  Identities=37%  Similarity=0.598  Sum_probs=331.2

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCe-ecCCCeEEEEecChhh
Q 011684           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES-APVGAAIGILAETEAE  138 (479)
Q Consensus        60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~-v~~G~~l~~i~~~~~~  138 (479)
                      +|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+. |++|++|++|++.+++
T Consensus         1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~   80 (435)
T TIGR01349         1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED   80 (435)
T ss_pred             CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence            378999999999999999999999999999999999999999999999999999999999999 9999999999764432


Q ss_pred             HHHHHhh-hhccCCCC--CCCCCCC-CCCCCCCCCCCCCCC-CC---CC---CCCCCccccChhHHHHHhhcCCCccccc
Q 011684          139 VAQAKAK-AASAGAAA--PASHPVT-STPVPAVSPPEPKKV-AE---SA---PSGPRKTVATPYAKKLLKQHKVDINSVV  207 (479)
Q Consensus       139 ~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~---~~---~~~~~~~~asP~aR~lA~e~gidl~~v~  207 (479)
                      ....... ..+....+  +.+..+. +.....+...+.... .+   ..   ...+.++++||+||+||+||||||++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~  160 (435)
T TIGR01349        81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA  160 (435)
T ss_pred             cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence            2100000 00000000  0000000 000000000000000 00   00   1112357899999999999999999999


Q ss_pred             cCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCceeccchhhHHHHHHhhhc-cCccEEEE
Q 011684          208 GTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAP-LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV  285 (479)
Q Consensus       208 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~  285 (479)
                      |||++|||+++||++|+.......  +.  ++..+ .+.......+ .....+.+||++|||+|+++|++| +++|||++
T Consensus       161 gtG~~GrI~~~DV~~~~~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~  235 (435)
T TIGR01349       161 GSGPNGRIVKKDIESFVPQSPASA--NF--QAAAT-TPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYV  235 (435)
T ss_pred             CCCCCCceeHHHHHHHHhcccccC--CC--ccccc-cccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEE
Confidence            999999999999999975421110  00  00000 0000000000 111245789999999999999999 89999999


Q ss_pred             EEEEeccHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEe
Q 011684          286 GYPIITDALDALYEKVKP-----KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQ  360 (479)
Q Consensus       286 ~~~iDvt~l~~~~~~~k~-----~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~  360 (479)
                      ..++|+|+|+++|+++++     .++||++||+||+++||++||.||++|++ ++|++|+++|||+||++++||++|||+
T Consensus       236 ~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~-~~i~~~~~vnigvAv~~~~GL~vPvi~  314 (435)
T TIGR01349       236 SIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTD-NFIRRYKNVDISVAVATPDGLITPIVR  314 (435)
T ss_pred             EEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeC-CeEEEeCCeeEEEEEECCCCeEECCCC
Confidence            999999999999999874     37999999999999999999999999964 689999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCe---
Q 011684          361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGF---  437 (479)
Q Consensus       361 ~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~---  437 (479)
                      +++++++.||+++++++.+++|+|+|.++|+.||||||||+|+||+++|+||+|+||++||++|++.++++++ +|+   
T Consensus       315 ~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~-~~~~~~  393 (435)
T TIGR01349       315 NADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVD-NDEEKG  393 (435)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEe-CCccce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999886 455   


Q ss_pred             EEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          438 FGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       438 i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      ++++++|+|+|+|||||+||+++++||++|+++||+|+.||+
T Consensus       394 i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll  435 (435)
T TIGR01349       394 FAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL  435 (435)
T ss_pred             eEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999999999999999999998875

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=2.1e-83  Score=668.68  Aligned_cols=403  Identities=27%  Similarity=0.390  Sum_probs=329.4

Q ss_pred             EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhhHH
Q 011684           61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVA  140 (479)
Q Consensus        61 i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~~~  140 (479)
                      ++||+||++|+||+|++|+|++||.|++||+||+||+||+.++++|+.+|+|.++++++|+.|.+|++|+.|..++++..
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~   80 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL   80 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999965433211


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccchhhH
Q 011684          141 QAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDV  220 (479)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV  220 (479)
                      .  .....    .++..++    ...+  .+..  ...  .....+++||+||+||+||||||++|+|||++|||+++||
T Consensus        81 ~--~~~~~----~~~~~~~----~~~~--~~~~--~~~--~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV  144 (416)
T PLN02528         81 R--SDSLL----LPTDSSN----IVSL--AESD--ERG--SNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDV  144 (416)
T ss_pred             c--ccCCC----CCCCCcc----CCCC--CCCC--ccc--cccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHH
Confidence            0  00000    0000000    0000  0000  000  0112357999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--CCceeccchhhHHHHHHhhhccCccEEEEEEEEeccHHHHH
Q 011684          221 EKAAGIAPSKSVAPSAAPAALPKPAPAA-APAAPLLP--GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDAL  297 (479)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~  297 (479)
                      ++|+............+.+..+...... ....+...  ..+.+|++++||+|+++|.+|+++|||++..+||+|+|+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~  224 (416)
T PLN02528        145 LKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVEL  224 (416)
T ss_pred             HHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHH
Confidence            9997532110000000000000000000 00000001  23568999999999999999999999999999999999999


Q ss_pred             HHHhCC------CCCCHHHHHHHHHHHHHhhCccccccccCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHH
Q 011684          298 YEKVKP------KGVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL  370 (479)
Q Consensus       298 ~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei  370 (479)
                      |+++++      .++||++||+||+++||.+||+||++|+++ +.+++|+++|||+||++++||++|||++++++++.+|
T Consensus       225 r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI  304 (416)
T PLN02528        225 KASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEI  304 (416)
T ss_pred             HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHH
Confidence            999864      169999999999999999999999999744 3799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEe
Q 011684          371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTA  450 (479)
Q Consensus       371 ~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~  450 (479)
                      +++++++.+++|+|+|+++|+.||||+|||+|+||+.+|+||+|+||+|||++|+++++|++.+||++.+|++|+|+|+|
T Consensus       305 ~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~  384 (416)
T PLN02528        305 TKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGA  384 (416)
T ss_pred             HHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEec
Confidence            99999999999999999999999999999999999999999999999999999999999998657899999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          451 DHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       451 DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |||||||+++++||++|+++||+|+.||+
T Consensus       385 DHRviDGa~aa~Fl~~lk~~le~P~~lll  413 (416)
T PLN02528        385 DHRVLDGATVARFCNEWKSYVEKPELLML  413 (416)
T ss_pred             cchhcCcHHHHHHHHHHHHHHhCHHHHHh
Confidence            99999999999999999999999998875

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=2.9e-83  Score=688.79  Aligned_cols=414  Identities=27%  Similarity=0.384  Sum_probs=332.8

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ..+|+||+||+ |+||+|++|+|++||.|++||.||+||+||++++|+||++|+|.++++++|+.|++|++|+.|.+.++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  194 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS  194 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            47999999999 99999999999999999999999999999999999999999999999999999999999999976443


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCC---CCCCCCCCCCCCCC--CCCCCCCcc-ccChhHHHHHhhcCCCccccccCCC
Q 011684          138 EVAQAKAKAASAGAAAPASHPVTSTP---VPAVSPPEPKKVAE--SAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGP  211 (479)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~-~asP~aR~lA~e~gidl~~v~gtG~  211 (479)
                      +......  ...+  .+....+.+..   ...+.+........  .....+.++ ++||+||+||+||||||+.|.|||+
T Consensus       195 ~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~  270 (546)
T TIGR01348       195 TPATAPA--PASA--QPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGI  270 (546)
T ss_pred             CcccccC--cccc--cccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCC
Confidence            2110000  0000  00000000000   00000000000000  000012345 6999999999999999999999999


Q ss_pred             CCccchhhHHHhhccCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEE
Q 011684          212 FGRITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAPAAAPA--APLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGY  287 (479)
Q Consensus       212 ~GrI~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~  287 (479)
                      +|||+++||++|+..... .+..+.  ++..+.....+...  ......++.+||++|||+|+++|.+| +++|||+++.
T Consensus       271 ~GrI~~~DV~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~  348 (546)
T TIGR01348       271 KGRILREDVQRFVKEPSVRAQAAAA--SAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFD  348 (546)
T ss_pred             CCeEeHHHHHHHhhccccccCcccc--cccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEE
Confidence            999999999999753211 100000  00000000000000  00011235789999999999999999 8999999999


Q ss_pred             EEeccHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEEeCCCeEEeEEe
Q 011684          288 PIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQ  360 (479)
Q Consensus       288 ~iDvt~l~~~~~~~k~~------~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~~~~gl~~pvi~  360 (479)
                      ++|+|+|+++|+++|+.      ++||++||+||+++||++||.||++|++ ++.+++|+++|||+||++++||++|||+
T Consensus       349 evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~  428 (546)
T TIGR01348       349 KADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIK  428 (546)
T ss_pred             EEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcC
Confidence            99999999999999852      6999999999999999999999999974 3579999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEE
Q 011684          361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGV  440 (479)
Q Consensus       361 ~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~  440 (479)
                      +++++++.+|+++++++.+++|+|+|+++|+.||||||||+|+||+++|+||+|+||++||++|+++++|+++ +|++++
T Consensus       429 ~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~~  507 (546)
T TIGR01348       429 DVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFEP  507 (546)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986 689999


Q ss_pred             EEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          441 KSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       441 r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +++|+|+|+|||||+||+++++||++|+++||+|+.||+
T Consensus       508 ~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~  546 (546)
T TIGR01348       508 RLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL  546 (546)
T ss_pred             EEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999999999999999998875

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=2.4e-80  Score=677.62  Aligned_cols=412  Identities=26%  Similarity=0.354  Sum_probs=331.3

Q ss_pred             eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +.++|+||+||  |+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.+|++++|+.|++|++|+.|.+.+
T Consensus       205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~  282 (633)
T PRK11854        205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG  282 (633)
T ss_pred             CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            56899999999  9999999999999999999999999999999999999999999999999999999999999997544


Q ss_pred             hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCc
Q 011684          137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV-A-ESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR  214 (479)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr  214 (479)
                      ++...  .. ....   ++...+.+.....+.+.+.+.. . ......+.++++||+|||||+||||||++|+|||++||
T Consensus       283 ~~~~~--~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr  356 (633)
T PRK11854        283 AAPAA--AP-AKQE---AAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGR  356 (633)
T ss_pred             CCccc--cc-cccC---CCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCe
Confidence            32110  00 0000   0000000000000000000000 0 00011123578999999999999999999999999999


Q ss_pred             cchhhHHHhhccCCC-CCCCCCCCCCCCCCCCC--CCCCCCC--CCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEE
Q 011684          215 ITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAP--AAAPAAP--LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYP  288 (479)
Q Consensus       215 I~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~  288 (479)
                      |+++||++|+..... ....+.+ + +.+...+  .+....+  .....+++||++|||.|+++|.+| +++|||+++.+
T Consensus       357 I~~~DV~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~e  434 (633)
T PRK11854        357 ILKEDVQAYVKDAVKRAEAAPAA-A-AAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDK  434 (633)
T ss_pred             EeHHHHHHHhhccccccccCCcc-c-ccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeE
Confidence            999999999753211 0000000 0 0000000  0000000  011235689999999999999999 79999999999


Q ss_pred             EeccHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEEeCCCeEEeEE
Q 011684          289 IITDALDALYEKVKP--------KGVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVL  359 (479)
Q Consensus       289 iDvt~l~~~~~~~k~--------~~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~~~~gl~~pvi  359 (479)
                      +|+|+|+++|++++.        .++|+++||+||+++||++||+||++|++ ++++++|+++|+|+||++++||++|||
T Consensus       435 vD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi  514 (633)
T PRK11854        435 ADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVF  514 (633)
T ss_pred             EEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeE
Confidence            999999999997662        26899999999999999999999999963 568999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEE
Q 011684          360 QDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFG  439 (479)
Q Consensus       360 ~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~  439 (479)
                      +++++++|.+|+++++++.+++|+++|.++++.+|||+|||+||||+++|+||+|+||+|||++|++.++|+++ +|.++
T Consensus       515 ~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~  593 (633)
T PRK11854        515 KDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFA  593 (633)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986 68899


Q ss_pred             EEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          440 VKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       440 ~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +|++|+|+|+||||++||+|+|+||++|+++||+|+.|||
T Consensus       594 ~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~  633 (633)
T PRK11854        594 PRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL  633 (633)
T ss_pred             EEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence            9999999999999999999999999999999999998875

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=1.7e-79  Score=642.73  Aligned_cols=403  Identities=40%  Similarity=0.606  Sum_probs=332.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh-
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA-  137 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~-  137 (479)
                      .+++||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|.+|++|+.|.+.++ 
T Consensus         3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~   82 (411)
T PRK11856          3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA   82 (411)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999976553 


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCccccChhHHHHHhhcCCCccccccCCCCCccc
Q 011684          138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA-PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRIT  216 (479)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~  216 (479)
                      +.+....   . ....+.. .+..  ...+.....+...... ...+.+.++||+||+||+||||||++|+|||++|||+
T Consensus        83 ~~~~~~~---~-~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~  155 (411)
T PRK11856         83 EAAAAAE---A-APEAPAP-EPAP--AAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRIT  155 (411)
T ss_pred             ccccccC---C-CCCCCCC-CCCC--CCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEE
Confidence            2111100   0 0000000 0000  0000000000000000 0111234799999999999999999999999999999


Q ss_pred             hhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHH
Q 011684          217 PEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD  295 (479)
Q Consensus       217 ~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~  295 (479)
                      ++||++|+.......    . +...  ..  ...........+.+|++++||.|+++|.+| +++|||+++.+||+|+|+
T Consensus       156 ~~Dv~~~~~~~~~~~----~-~~~~--~~--~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~  226 (411)
T PRK11856        156 KEDVEAAAAAAAPAA----A-AAAA--AA--AAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALL  226 (411)
T ss_pred             HHHHHHHHhcccccC----C-CCCC--CC--CCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHH
Confidence            999999975321110    0 0000  00  000000011356789999999999999999 899999999999999999


Q ss_pred             HHHHHhCCC--CCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHH
Q 011684          296 ALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQK  373 (479)
Q Consensus       296 ~~~~~~k~~--~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~  373 (479)
                      ++++++++.  ++||+++|+||+++||++||+||++|.+ +++++|++||+|+||++++||++|+|+++++++|.+|+++
T Consensus       227 ~~~k~~~~~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~-~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~  305 (411)
T PRK11856        227 ALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWDD-DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELARE  305 (411)
T ss_pred             HHHHHHHhhccCccHHHHHHHHHHHHHHhCcHhheEEeC-CEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHH
Confidence            999998754  8999999999999999999999999964 5799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEeccc
Q 011684          374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHR  453 (479)
Q Consensus       374 ~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHR  453 (479)
                      ++++++++|+++|.++++.+|||+|||+||+|...|+|++++||++||+||++++++++. +|+++++.+|+|+|+||||
T Consensus       306 ~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~lslt~DHR  384 (411)
T PRK11856        306 IKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSFDHR  384 (411)
T ss_pred             HHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEeEEeehh
Confidence            999999999999999999999999999999999999999999999999999999999986 7999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHhcCCccccC
Q 011684          454 IIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       454 vvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +|||+|+++||+.|+++||+|+.||+
T Consensus       385 viDG~~aa~Fl~~l~~~le~p~~ll~  410 (411)
T PRK11856        385 VIDGADAARFLKALKELLENPALLLL  410 (411)
T ss_pred             hcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence            99999999999999999999998875

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=1.6e-79  Score=662.47  Aligned_cols=415  Identities=31%  Similarity=0.472  Sum_probs=330.8

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ..+|+||+||+ |+||+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|.+|++|+.|.+.++
T Consensus       119 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~~  197 (547)
T PRK11855        119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAA  197 (547)
T ss_pred             ceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            57999999999 99999999999999999999999999999999999999999999999999999999999999976533


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCcc-ccChhHHHHHhhcCCCccccccCCCCCcc
Q 011684          138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE-PKKVAESAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGPFGRI  215 (479)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~asP~aR~lA~e~gidl~~v~gtG~~GrI  215 (479)
                      +....  .... . ..++.. ..+.....+.... .....+......++. ++||+|||||+||||||++|.|||++|||
T Consensus       198 ~~~~~--~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI  272 (547)
T PRK11855        198 APAAA--AAPA-A-AAPAAA-AAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRI  272 (547)
T ss_pred             ccccc--cCCC-C-CCCccc-cccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcE
Confidence            21000  0000 0 000000 0000000000000 000000001112244 79999999999999999999999999999


Q ss_pred             chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEe
Q 011684          216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAA--P--LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPII  290 (479)
Q Consensus       216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iD  290 (479)
                      +++||++|+.........+...+...+....+.....  .  .....+.+||+++||.|+++|++| +++|||+++.+||
T Consensus       273 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd  352 (547)
T PRK11855        273 TKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEAD  352 (547)
T ss_pred             eHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEE
Confidence            9999999975321110000000000000000000000  0  001245689999999999999999 7999999999999


Q ss_pred             ccHHHHHHHHhCC----C--CCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEEeCCCeEEeEEecCC
Q 011684          291 TDALDALYEKVKP----K--GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQDAD  363 (479)
Q Consensus       291 vt~l~~~~~~~k~----~--~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~  363 (479)
                      +|+|+++|+++++    .  ++|||++|+||+++||++||+||++|++ ++.+++|++||+|+||++++||++|+|++++
T Consensus       353 ~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~  432 (547)
T PRK11855        353 ITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVD  432 (547)
T ss_pred             ChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCc
Confidence            9999999998864    2  6899999999999999999999999974 5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEE
Q 011684          364 KLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSK  443 (479)
Q Consensus       364 ~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~  443 (479)
                      ++++.+|+++++++.+++|+++|.++++.+|||+|||+||||+++|+|++|+||+|||++|++.++|++. +|.+.+|.+
T Consensus       433 ~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~-~~~~~~r~~  511 (547)
T PRK11855        433 KKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWD-GKEFVPRLM  511 (547)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeee-CCEEEEEeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999764 788999999


Q ss_pred             EEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          444 MLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |+|+|+||||+|||+|+++||++|+++||+|+.||+
T Consensus       512 m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~  547 (547)
T PRK11855        512 LPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL  547 (547)
T ss_pred             EEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999999999999998875

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.1e-79  Score=635.95  Aligned_cols=394  Identities=38%  Similarity=0.572  Sum_probs=334.9

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      .++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||.+|+|.+|++++|++|++|++|++|.+.++
T Consensus         2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~   81 (404)
T COG0508           2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA   81 (404)
T ss_pred             CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999987765


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccch
Q 011684          138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP  217 (479)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~  217 (479)
                      +..     +..     .++..+  ... .++  ..+  .+.+....++..+||++|+||+|+||||.++.|||++|||++
T Consensus        82 ~~~-----a~~-----~~~~~~--~~~-~~~--~~~--~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~  144 (404)
T COG0508          82 DAP-----AAA-----EAPPEP--AAA-APA--SAP--ATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITK  144 (404)
T ss_pred             ccc-----ccC-----cccCCc--ccc-CcC--ccc--CccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceec
Confidence            420     000     000000  000 000  000  000000114679999999999999999999999999999999


Q ss_pred             hhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHH
Q 011684          218 EDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA  296 (479)
Q Consensus       218 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~  296 (479)
                      +|+++++......     + ..+.  .+.  +........++++|++++||.|+++|.+| .++||++...++|++.|.+
T Consensus       145 ~d~~~~~~~~~~~-----~-~~~~--~~~--~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~  214 (404)
T COG0508         145 KDVEAAVAEKAAA-----A-AAPA--PAA--AAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMA  214 (404)
T ss_pred             cchhhhccccccc-----c-cccc--ccc--CCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHH
Confidence            9999998753110     0 0000  000  00001223467899999999999999999 8999999999999999999


Q ss_pred             HHHHhCC------CCCCHHHHHHHHHHHHHhhCccccccccCCC-eeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHH
Q 011684          297 LYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASCKDGK-SFTYNANINIAVAVAINGGLITPVLQDADKLDLYL  369 (479)
Q Consensus       297 ~~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~~~~~-~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~e  369 (479)
                      +|++++.      .+++|++|++||++.||+++|.+|++++.++ .+++++++|+|++|++++||++|||++++++++.+
T Consensus       215 lr~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~  294 (404)
T COG0508         215 LRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAE  294 (404)
T ss_pred             HHHHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHH
Confidence            9999875      2789999999999999999999997775322 79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEE
Q 011684          370 LSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVT  449 (479)
Q Consensus       370 i~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt  449 (479)
                      |.+++.++..++|+|+|++++++|+||+|||+|+||...|+||+|+||++||++|++.++++|. +|+++++++|+|+|+
T Consensus       295 i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls  373 (404)
T COG0508         295 IAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLS  373 (404)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeeccc
Confidence            9999999999999999999999999999999999999999999999999999999999999996 569999999999999


Q ss_pred             ecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          450 ADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       450 ~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      ||||++||+++++||.+++++||||..|++
T Consensus       374 ~DHRviDGa~aa~Fl~~ik~~le~p~~ll~  403 (404)
T COG0508         374 YDHRVIDGAEAARFLVALKELLEDPERLLL  403 (404)
T ss_pred             ccccccccHHHHHHHHHHHHHhcChhhhhc
Confidence            999999999999999999999999998874

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=8.7e-76  Score=609.71  Aligned_cols=366  Identities=25%  Similarity=0.402  Sum_probs=301.3

Q ss_pred             cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      .....+|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.+|++++||.|++|++|+.|++
T Consensus        88 ~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~  167 (463)
T PLN02226         88 SGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK  167 (463)
T ss_pred             cCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence            33447999999999999999999999999999999999999999999999999999999999999999999999999965


Q ss_pred             ChhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCc
Q 011684          135 TEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR  214 (479)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr  214 (479)
                      .+++.+   ..  .     +....+.  . ..+.+.+     +..+....++.++|++|+.+          .++|+.+.
T Consensus       168 ~~~~~~---~~--~-----~~~~~~~--~-~~~~~~~-----~~~~~~~~~v~asp~~r~~~----------~~~~~~~~  219 (463)
T PLN02226        168 SEDAAS---QV--T-----PSQKIPE--T-TDPKPSP-----PAEDKQKPKVESAPVAEKPK----------APSSPPPP  219 (463)
T ss_pred             CCcccc---cc--C-----ccCCCCC--C-CCCCCCC-----ccccccccCCCcchhhcccc----------CCCCCCCC
Confidence            432110   00  0     0000000  0 0000000     00001112456777776532          12232210


Q ss_pred             cchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccH
Q 011684          215 ITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDA  293 (479)
Q Consensus       215 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~  293 (479)
                                 .  .      +  ..    .+    ........+.+|+++|||.|+++|.+| +++||||+..++|+|+
T Consensus       220 -----------~--~------~--~~----~~----~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~  270 (463)
T PLN02226        220 -----------K--Q------S--AK----EP----QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN  270 (463)
T ss_pred             -----------c--c------c--cc----Cc----ccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHH
Confidence                       0  0      0  00    00    000000135689999999999999999 7999999999999999


Q ss_pred             HHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCC
Q 011684          294 LDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLD  366 (479)
Q Consensus       294 l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~s  366 (479)
                      |.++|+++++       .++||++||+||+++||++||+||++|+ ++.|++|+++|||+||++++||++|||+++++++
T Consensus       271 L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~-~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~s  349 (463)
T PLN02226        271 LMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVID-GDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMN  349 (463)
T ss_pred             HHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEc-CCEEEEeCcccEEEEEECCCCEEeccCCCcccCC
Confidence            9999999874       1689999999999999999999999996 4589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEE
Q 011684          367 LYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLV  446 (479)
Q Consensus       367 l~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~l  446 (479)
                      +.||+++++++++++|+|+|+++|++||||||||+|+||+++|+||||+||++||++|+++++|++. ||++++|++|+|
T Consensus       350 l~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~l  428 (463)
T PLN02226        350 FAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYV  428 (463)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999986 799999999999


Q ss_pred             EEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          447 NVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       447 slt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +|+||||+|||+++|+||++|+++||+|+.||+
T Consensus       429 sLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl  461 (463)
T PLN02226        429 ALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLL  461 (463)
T ss_pred             eEecchhhhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence            999999999999999999999999999998764

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=1.1e-74  Score=597.88  Aligned_cols=368  Identities=27%  Similarity=0.426  Sum_probs=299.2

Q ss_pred             cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      ...+.+|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|++|++|++|++
T Consensus        41 ~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~  120 (418)
T PTZ00144         41 YFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT  120 (418)
T ss_pred             cccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             ChhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCc
Q 011684          135 TEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR  214 (479)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr  214 (479)
                      .+++..   .. .. +   .....+..   ..+.  +..             ...|.+|++++++++++..+...     
T Consensus       121 ~~~~~~---~~-~~-~---~~~~~~~~---~~~~--~~~-------------~~~p~~~~~a~~~~~a~p~vr~~-----  169 (418)
T PTZ00144        121 GGAPPA---AA-PA-A---AAAAKAEK---TTPE--KPK-------------AAAPTPEPPAASKPTPPAAAKPP-----  169 (418)
T ss_pred             CCcccc---cc-cc-c---cCCCCCcc---CCCC--CCC-------------CCCCccccccccccCCchhhhcc-----
Confidence            443110   00 00 0   00000000   0000  000             00133344444444444333100     


Q ss_pred             cchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccH
Q 011684          215 ITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDA  293 (479)
Q Consensus       215 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~  293 (479)
                                ..  .+.    +.+.+.  ..  +    ......+.+|+++|||+|+++|.+| +++|||+++.++|+|+
T Consensus       170 ----------~~--~~~----~~~~~~--~~--~----~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~  225 (418)
T PTZ00144        170 ----------EP--APA----AKPPPT--PV--A----RADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSA  225 (418)
T ss_pred             ----------cc--CCC----CCCCCC--Cc--c----ccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechH
Confidence                      00  000    000000  00  0    0000134589999999999999999 7999999999999999


Q ss_pred             HHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCC
Q 011684          294 LDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLD  366 (479)
Q Consensus       294 l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~s  366 (479)
                      |.++|+++++       .++||++||+||+++||.+||+||++|+ ++++++|+++|||+||++++||++|||+++++++
T Consensus       226 l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~s  304 (418)
T PTZ00144        226 LMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYID-GDEIVYRNYVDISVAVATPTGLVVPVIRNCENKS  304 (418)
T ss_pred             HHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEc-CCEEEEecCCCEEEEEECCCCEEEccCCCcccCC
Confidence            9999999874       1699999999999999999999999996 4589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEE
Q 011684          367 LYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLV  446 (479)
Q Consensus       367 l~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~l  446 (479)
                      +.||+++++++.+++|+|+|.++|+.||||+|||+|++|+++|+||+|+||+|||++|+++++|+++ +|++++|++|+|
T Consensus       305 l~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~l  383 (418)
T PTZ00144        305 FAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYL  383 (418)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEE-CCEEEEEeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999986 789999999999


Q ss_pred             EEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          447 NVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       447 slt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +|+||||++||+++|+||++|+++||+|+.||+
T Consensus       384 sLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll  416 (418)
T PTZ00144        384 ALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLL  416 (418)
T ss_pred             EEecchhhhChHHHHHHHHHHHHHhcCHHHHhh
Confidence            999999999999999999999999999998764

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=2.7e-72  Score=544.81  Aligned_cols=403  Identities=28%  Similarity=0.426  Sum_probs=337.1

Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      .-...+++-++||++.|.++.+|+|+|||.|++-|.||||++||+.++|.+.++|+|++|+-+.||...+|++|..++-+
T Consensus        62 ~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve  141 (474)
T KOG0558|consen   62 SGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVE  141 (474)
T ss_pred             cceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeec
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             hhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCcc
Q 011684          136 EAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI  215 (479)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI  215 (479)
                      +.... ...     +..+++...+       .       .... .....+..++|++||||+|+||||+.|+|||.+|||
T Consensus       142 ~~~ds-~e~-----s~es~~vs~~-------~-------~~~~-~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRv  200 (474)
T KOG0558|consen  142 DSQDS-PED-----SDESPAVSLG-------E-------SKQG-EESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRV  200 (474)
T ss_pred             cCcCC-ccc-----CCccccccCC-------C-------Cchh-hhhccccccCHHHHHHHHHhCCceEeeeccCCCCcc
Confidence            32110 000     0000000000       0       0000 011246789999999999999999999999999999


Q ss_pred             chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhccCccEEEEEEEEeccHHH
Q 011684          216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALD  295 (479)
Q Consensus       216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~  295 (479)
                      +|+||++|+......-..+.+..-....++.+.....+.......+|+.+.+|+|-+.|++++.||||.++.|||+|.|.
T Consensus       201 LKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLv  280 (474)
T KOG0558|consen  201 LKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLV  280 (474)
T ss_pred             hHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCccccccccChHHHH
Confidence            99999999976432110000000000000000111122334466899999999999999999999999999999999999


Q ss_pred             HHHHHhCCC------CCCHHHHHHHHHHHHHhhCccccccccCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHH
Q 011684          296 ALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLY  368 (479)
Q Consensus       296 ~~~~~~k~~------~~s~~~~likAva~Al~~~P~~n~~~~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~  368 (479)
                      +||+++|..      ++||++||+||++.||-++|.+|+.++.. ..|++.-+.|||+|++++.||++|.|+|++.+++.
T Consensus       281 klr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~  360 (474)
T KOG0558|consen  281 KLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIF  360 (474)
T ss_pred             HHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHH
Confidence            999998853      68999999999999999999999999643 58889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEE
Q 011684          369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNV  448 (479)
Q Consensus       369 ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lsl  448 (479)
                      ||++++++|.+..+.|+|.+.|+.+|||++||+|.+|.++..|++++|+++|.++|++...|-.++.|++....+|.|++
T Consensus       361 eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~Vsw  440 (474)
T KOG0558|consen  361 EIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSW  440 (474)
T ss_pred             HHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999888887788888899999999


Q ss_pred             EecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          449 TADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       449 t~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      ++||||+||+..|||-+.+++|||+|+.||+
T Consensus       441 sADHRViDGaTmarFsn~WK~YlE~Pa~mll  471 (474)
T KOG0558|consen  441 SADHRVIDGATMARFSNQWKEYLENPALMLL  471 (474)
T ss_pred             ecCceeeccHHHHHHHHHHHHHhhCHHHHhh
Confidence            9999999999999999999999999998775

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=3.8e-67  Score=525.11  Aligned_cols=292  Identities=29%  Similarity=0.415  Sum_probs=251.6

Q ss_pred             cccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCceecc
Q 011684          186 TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPA-AAP-AAPLLPGSTVVPF  263 (479)
Q Consensus       186 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~p~  263 (479)
                      +++||+||+||+|+||||++|+|||++|||+++||++|+...........+.+.+....++. ..+ ...+....+.+|+
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   81 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV   81 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence            57999999999999999999999999999999999999753211000000000000000000 000 0001112456899


Q ss_pred             chhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccC-CC
Q 011684          264 TTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKD-GK  334 (479)
Q Consensus       264 s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~-~~  334 (479)
                      ++||++|+++|.+| +++|||+++.+||+|+|+++|+++++       .++||++||+||+++||.+||.||++|++ ++
T Consensus        82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~  161 (306)
T PRK11857         82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS  161 (306)
T ss_pred             cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCC
Confidence            99999999999999 79999999999999999999999874       16999999999999999999999999974 35


Q ss_pred             eeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCC
Q 011684          335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP  414 (479)
Q Consensus       335 ~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~  414 (479)
                      .+++|+++|||+||++++||++|||++++++|+.||+++++++.+++|+|+|.++|+.||||+|||+|++|..+|+||+|
T Consensus       162 ~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn  241 (306)
T PRK11857        162 ELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVIN  241 (306)
T ss_pred             EEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684          415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT  478 (479)
Q Consensus       415 ~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll  478 (479)
                      +||+|||++|++++++++. ||+++++++|+|+|+||||+|||+++++||++|+++||+|+.|+
T Consensus       242 ~pq~aILgvG~i~~~pvv~-~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~  304 (306)
T PRK11857        242 YPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILG  304 (306)
T ss_pred             CCccceeecccceEEeEEE-CCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence            9999999999999999985 79999999999999999999999999999999999999999765

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=4.9e-67  Score=532.69  Aligned_cols=292  Identities=30%  Similarity=0.492  Sum_probs=254.0

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecc
Q 011684          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPF  263 (479)
Q Consensus       184 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  263 (479)
                      .++++||+||+||+|+||||++|+|||++|||+++||++|+.......  ..+++.+.+.....+.. .+.....+.+|+
T Consensus        47 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~v~l  123 (347)
T PRK14843         47 NVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEND--SIKSPAQIEKVEEVPDN-VTPYGEIERIPM  123 (347)
T ss_pred             ccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCc--cccCCCCCccccCCCcc-cccCCcceeeeC
Confidence            466899999999999999999999999999999999999974321100  00000000000000000 001112456899


Q ss_pred             chhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCC-C
Q 011684          264 TTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDG-K  334 (479)
Q Consensus       264 s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~-~  334 (479)
                      ++|||.|+++|.+| +++|||++..++|+|+|+++|+++++       .++||++||+||++.||.+||.||++|+++ +
T Consensus       124 ~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~  203 (347)
T PRK14843        124 TPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGK  203 (347)
T ss_pred             cHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCC
Confidence            99999999999999 89999999999999999999998863       269999999999999999999999999753 5


Q ss_pred             eeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCC
Q 011684          335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP  414 (479)
Q Consensus       335 ~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~  414 (479)
                      .+++|+++|||+||++++||++|||++++++++.+|+++++++.+++|+|+|+++|++||||||||+|+||+++|+||+|
T Consensus       204 ~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIIn  283 (347)
T PRK14843        204 TIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIIN  283 (347)
T ss_pred             eEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceecccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       415 ~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +||+|||++|++.++|+++ ||+++++++|+|+|+||||+|||+++++||++|+++||+|+.|++
T Consensus       284 pPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~  347 (347)
T PRK14843        284 QPNSAILGVSSTIEKPVVV-NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI  347 (347)
T ss_pred             CCceEEEecCCcceeeEEE-CCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence            9999999999999999987 799999999999999999999999999999999999999998874

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=3e-65  Score=498.09  Aligned_cols=369  Identities=25%  Similarity=0.418  Sum_probs=292.5

Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ....++.+|.++++++||.|.+|++++||.|++++.||+|||||.+++|.||.+|+|.+++|++||+|..|+.|+.|...
T Consensus        70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen   70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             hhhHHHHHhhhhccCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCC
Q 011684          136 EAEVAQAKAKAASAGAAAPASHPVTST--PVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFG  213 (479)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~G  213 (479)
                      .....   ....     +|+.+.|..+  .++.|.+.    +.+. ..++..+.-+|.                      
T Consensus       150 aApa~---~~~~-----apa~~~pk~~~a~~a~p~~~----s~~~-p~~~apv~e~p~----------------------  194 (457)
T KOG0559|consen  150 AAPAK---GGAS-----APAKAEPKTAPAAAAPPKPS----SKPP-PKEAAPVAESPP----------------------  194 (457)
T ss_pred             CCCcc---cccc-----CCCccCCCCCCCCCCCCCcc----CCCC-ccccCCCCCCCC----------------------
Confidence            32211   1000     1111111000  00011000    0000 000000000000                      


Q ss_pred             ccchhhHHHhhccCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCceeccchhhHHHHHHhhhcc-CccEEEE
Q 011684          214 RITPEDVEKAAGIAPSKSVAPSAAPAALPKPAP-------AAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRV  285 (479)
Q Consensus       214 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S~-~vP~~~~  285 (479)
                                      ++  +.+.+.++++...       .+.....+.-.+.+++|++||++||.+|.+|+ +-...+.
T Consensus       195 ----------------~p--~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTT  256 (457)
T KOG0559|consen  195 ----------------AP--SSPEPVPASAKKPSVAQPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTT  256 (457)
T ss_pred             ----------------CC--CCCCCCCccccCccccCCCCCcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Confidence                            00  0000000000000       00001111223568999999999999999995 5556667


Q ss_pred             EEEEeccHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeE
Q 011684          286 GYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV  358 (479)
Q Consensus       286 ~~~iDvt~l~~~~~~~k~~-------~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pv  358 (479)
                      +-|||+++|+++|+++|+.       ++.|+.+|+||++.||++.|.+|+.|+ |+.|+|+|++||++||.++.||++||
T Consensus       257 FNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavId-g~~iVYRDyvDISvAVaTpkGLVvPV  335 (457)
T KOG0559|consen  257 FNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVID-GDDIVYRDYVDISVAVATPKGLVVPV  335 (457)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeec-CCeeEEeecceeEEEeecCCceeeee
Confidence            7899999999999998753       678899999999999999999999995 67999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeE
Q 011684          359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFF  438 (479)
Q Consensus       359 i~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i  438 (479)
                      |||++.+++.||.+.+..|..++|+|+|..+|+.||||||||-|.||....|||||+||++||++..|.++|++. +|++
T Consensus       336 iRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~V  414 (457)
T KOG0559|consen  336 IRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQV  414 (457)
T ss_pred             ecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987 7999


Q ss_pred             EEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          439 GVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       439 ~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      ++|++|.|.||||||++||-++--||+.+++++|||..|||
T Consensus       415 v~RPMMYvALTYDHRliDGREAVtFLr~iK~~VEDP~~mll  455 (457)
T KOG0559|consen  415 VPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLL  455 (457)
T ss_pred             eeccceEEEeeccccccccHHHHHHHHHHHHHhhCHHHHhh
Confidence            99999999999999999999999999999999999998875

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=5.8e-56  Score=429.56  Aligned_cols=222  Identities=41%  Similarity=0.633  Sum_probs=197.3

Q ss_pred             CCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCcccccc
Q 011684          257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNAS  329 (479)
Q Consensus       257 ~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~~------~~s~~~~likAva~Al~~~P~~n~~  329 (479)
                      ..+++|++++||+|+++|.+| +++|||+++.+||+|+|+++++++++.      ++|+++|++||+++||.+||+||++
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~   82 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS   82 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence            367899999999999999999 599999999999999999999988752      8999999999999999999999999


Q ss_pred             ccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccce
Q 011684          330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (479)
Q Consensus       330 ~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~f  409 (479)
                      |++++++++|+++|+|+||++++||++|||++++++|+.||+++++++.+++|+|+|+++|++||||+|||+|++|+++|
T Consensus        83 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~  162 (231)
T PF00198_consen   83 WDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESF  162 (231)
T ss_dssp             EETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCE
T ss_pred             cccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCccee
Confidence            97554599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       410 tpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +||+||||+|||++|+++++|++ ++|+++++++|+|+|+||||++||+++++||++|+++||+|++|||
T Consensus       163 ~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll  231 (231)
T PF00198_consen  163 TPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL  231 (231)
T ss_dssp             E----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred             EccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999999999 4899999999999999999999999999999999999999999986

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=6.9e-45  Score=393.26  Aligned_cols=215  Identities=29%  Similarity=0.409  Sum_probs=202.7

Q ss_pred             CceeccchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccc
Q 011684          258 STVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASC  330 (479)
Q Consensus       258 ~~~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~  330 (479)
                      .+.+||++++++|+++|..|+.+|+++...+|+++.|+++|+.+|+       .|+||+++|+||+++||++||.+|++|
T Consensus       115 ~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy  194 (1228)
T PRK12270        115 DEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY  194 (1228)
T ss_pred             cceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence            4678999999999999999999999999999999999999999873       279999999999999999999999999


Q ss_pred             c--CCC-eeEEcCcccEEEEEEeC-----CCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecC
Q 011684          331 K--DGK-SFTYNANINIAVAVAIN-----GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG  402 (479)
Q Consensus       331 ~--~~~-~i~~~~~i~i~~aV~~~-----~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg  402 (479)
                      .  ||+ .++++++||+|+||+++     +||++|+|+++++++|.+|.++++++++|+|+|+|+++|++|+||+|||+|
T Consensus       195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G  274 (1228)
T PRK12270        195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG  274 (1228)
T ss_pred             eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence            7  442 49999999999999997     579999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeecCCCCCceEEEeCcceEEEEEc-----CCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhc
Q 011684          403 MFGVDRFDAILPPGQGAIMAVGASKPTVVAD-----ADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE  472 (479)
Q Consensus       403 ~~G~~~ftpii~~~~~ail~vG~~~~~~v~~-----~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le  472 (479)
                      +||..+|+||+|+||+|||++|++...+++.     .+|++.++++|+|++|||||||||+++|+||+.|+++|+
T Consensus       275 ~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe  349 (1228)
T PRK12270        275 GIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL  349 (1228)
T ss_pred             cccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence            9999999999999999999999999877763     246799999999999999999999999999999999998

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=99.97  E-value=2.6e-30  Score=245.69  Aligned_cols=194  Identities=15%  Similarity=0.159  Sum_probs=148.4

Q ss_pred             cchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcc
Q 011684          263 FTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANI  342 (479)
Q Consensus       263 ~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i  342 (479)
                      +..--|+---..-++...|+|++|++||+|+|.++   .|++|++|+.+++|++++|+|++|+||.|+.+++++++||.|
T Consensus         8 ~~~W~Rke~f~~f~~~~~p~~svT~~lDvT~l~~~---~K~~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i   84 (206)
T PF00302_consen    8 LETWPRKEHFEFFRNFDNPYFSVTVNLDVTNLYKY---AKEKGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRI   84 (206)
T ss_dssp             GGGSTTHHHHHHHTTTSBEEEEEEEEEE-HHHHHH---HHHTT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-
T ss_pred             hhcCccHHHHHHHhcCCCceEecceeEEhHHHHHH---HHHcCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCc
Confidence            33333343334445678899999999999999555   555699999999999999999999999999876799999999


Q ss_pred             cEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcC-CCCCCC-CCCCeEEEeecCCCCcccee-ecCCCCC--
Q 011684          343 NIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQPHE-YNSGTFTLSNLGMFGVDRFD-AILPPGQ--  417 (479)
Q Consensus       343 ~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~~d-~~~~tftISnlg~~G~~~ft-pii~~~~--  417 (479)
                      +++++|..+++..+..++..+..++.+|.+.+.+.++++++. .+.+++ ...+.|.+||++|+.+++++ ++...+.  
T Consensus        85 ~ps~Tv~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~  164 (206)
T PF00302_consen   85 DPSYTVFHKDDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDS  164 (206)
T ss_dssp             EEEEEEEETTTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-S
T ss_pred             ceeeeEEeCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCccc
Confidence            999999987654666778899999999999999999998664 455443 45689999999999999987 4444432  


Q ss_pred             ceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHH
Q 011684          418 GAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFS  468 (479)
Q Consensus       418 ~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~  468 (479)
                      .++++||++.++     +|    |.+|||++++||++|||+|+|+|++.||
T Consensus       165 ~P~it~GK~~~~-----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ  206 (206)
T PF00302_consen  165 IPRITWGKYFEE-----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ  206 (206)
T ss_dssp             S-EEEEE--EEE-----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred             ccEEEeeeeEeE-----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence            589999999987     78    6689999999999999999999999987

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=99.97  E-value=3.2e-30  Score=246.49  Aligned_cols=181  Identities=13%  Similarity=0.121  Sum_probs=156.9

Q ss_pred             ccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEE
Q 011684          280 VPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVL  359 (479)
Q Consensus       280 vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi  359 (479)
                      -|.|++|++||+|+|.   +.+|++|++|++.++||+++|+|++|+||+|+. ++++++||.|+++++|..+++..+..+
T Consensus        30 ~~~fsiT~~iDiT~l~---~~~K~~~~~fy~~~ly~v~kavN~~~eFR~r~~-~~~v~~~D~i~ps~Ti~~~~~~tFs~~  105 (219)
T PRK13757         30 QCTYNQTVQLDITAFL---KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMK-DGELVIWDSVHPCYTVFHEQTETFSSL  105 (219)
T ss_pred             CCceEEEEEEEHHHHH---HHHHHcCCChHHHHHHHHHHHHhcCHhHheEEE-CCeEEEEeEEeeeEEEEeCCCceEEEE
Confidence            3449999999999994   555666999999999999999999999999996 458899999999999998877667788


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHcC-CCCCCCCCCCeEEEeecCCCCcccee-ecCCCC--CceEEEeCcceEEEEEcCC
Q 011684          360 QDADKLDLYLLSQKWKELVEKARSK-QLQPHEYNSGTFTLSNLGMFGVDRFD-AILPPG--QGAIMAVGASKPTVVADAD  435 (479)
Q Consensus       360 ~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~~d~~~~tftISnlg~~G~~~ft-pii~~~--~~ail~vG~~~~~~v~~~~  435 (479)
                      +..+..++.+|.+.+...++++++. .+.+.+...+.|.||++||+.+++|+ ++.+..  ..+++++|++.++     +
T Consensus       106 ~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~~-----~  180 (219)
T PRK13757        106 WSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ-----G  180 (219)
T ss_pred             EecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEEE-----C
Confidence            9999999999999999999998875 45555556789999999999999986 444333  2589999999876     7


Q ss_pred             CeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684          436 GFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVEN  473 (479)
Q Consensus       436 G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~  473 (479)
                      |    |.+|||++++||++|||+|+|+|++.||++|++
T Consensus       181 g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~  214 (219)
T PRK13757        181 D----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE  214 (219)
T ss_pred             C----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence            7    678999999999999999999999999999976

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=99.94  E-value=7.1e-26  Score=207.62  Aligned_cols=190  Identities=15%  Similarity=0.194  Sum_probs=164.0

Q ss_pred             hccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeE
Q 011684          276 ESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLI  355 (479)
Q Consensus       276 ~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~  355 (479)
                      ++...|||.++.++|+|++..++   |++|++|++++++|+.+++++|+|||.|+.+ +++++||.+++.++|.++++..
T Consensus        24 R~~~~p~y~i~~~LDvtn~~~~v---k~~~l~Ff~a~l~avtr~~n~~~EFRlr~~~-~~~~~~d~v~p~~tv~~~~~e~   99 (219)
T COG4845          24 RLLQYPHYDINLQLDVTNFYGYV---KENGLSFFPALLYAVTRCANRHQEFRLRIQN-GQLGYWDNVPPMYTVFHGETET   99 (219)
T ss_pred             hhcccceEeeeeeeehhHHHHHH---HHcCCcchHHHHHHHHHHhcccHHhHhhhcC-CeeEEeecCCcceEEEcCCCcE
Confidence            66789999999999999995554   4459999999999999999999999999975 5999999999999999988888


Q ss_pred             EeEEecCCCCCHHHHHHHHHHHHHHHHcCC-CCCCC-CCCCeEEEeecCCCCccceeecCCCCC---ceEEEeCcceEEE
Q 011684          356 TPVLQDADKLDLYLLSQKWKELVEKARSKQ-LQPHE-YNSGTFTLSNLGMFGVDRFDAILPPGQ---GAIMAVGASKPTV  430 (479)
Q Consensus       356 ~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~-l~~~d-~~~~tftISnlg~~G~~~ftpii~~~~---~ail~vG~~~~~~  430 (479)
                      +.+++-....|+.+|.+.+...+++++.+. +.+++ -....+.+||++|+.+++++.-+....   .+++.+|+..++ 
T Consensus       100 Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf~~~-  178 (219)
T COG4845         100 FSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRFYEE-  178 (219)
T ss_pred             EEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeecceecc-
Confidence            889999999999999999999999988765 33322 335788899999999888775444222   489999999876 


Q ss_pred             EEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684          431 VADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT  478 (479)
Q Consensus       431 v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll  478 (479)
                          ||++    +|||++++||+.|||+|+++|++.||++++.|-.+.
T Consensus       179 ----~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~~  218 (219)
T COG4845         179 ----DGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCIP  218 (219)
T ss_pred             ----CCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCCC
Confidence                9965    599999999999999999999999999999987653

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.77  E-value=9.6e-19  Score=139.95  Aligned_cols=74  Identities=38%  Similarity=0.691  Sum_probs=72.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      ++|++|.+|..+.+++|.+|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.76  E-value=2e-18  Score=177.28  Aligned_cols=120  Identities=33%  Similarity=0.525  Sum_probs=103.2

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      .++|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+.+.+.
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~   81 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEV   81 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999964321


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccch
Q 011684          138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP  217 (479)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~  217 (479)
                      .                  ..                        .....++|++++++++ ++++..+.+++..+++..
T Consensus        82 ~------------------~~------------------------~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~  118 (371)
T PRK14875         82 S------------------DA------------------------EIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGG  118 (371)
T ss_pred             C------------------cc------------------------cccccccchhhhcccc-ccchhhccCCCCcceEcC
Confidence            0                  00                        0123678888998888 899998888888777765


Q ss_pred             hhH
Q 011684          218 EDV  220 (479)
Q Consensus       218 ~DV  220 (479)
                      .++
T Consensus       119 ~~i  121 (371)
T PRK14875        119 RTV  121 (371)
T ss_pred             cEE
Confidence            555

>PRK06748 hypothetical protein; Validated

Probab=99.67  E-value=4.5e-16  Score=126.07  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=60.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe-cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES-DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet-~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      |+|.+|+|++||.|++||+|++||| ||+.++|+||.+|+|.++++++||.|++|++|+.|++
T Consensus        13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            9999999999999999999999999 8999999999999999999999999999999999964

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.58  E-value=8.3e-15  Score=116.21  Aligned_cols=61  Identities=25%  Similarity=0.476  Sum_probs=59.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999873

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.55  E-value=1.2e-14  Score=130.45  Aligned_cols=61  Identities=21%  Similarity=0.493  Sum_probs=60.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |++.+.+|++||+|++||.||+||+|||+++|+||.+|+|.+|++++||.|..||+|+.|.
T Consensus        79 Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.54  E-value=2.9e-14  Score=151.07  Aligned_cols=81  Identities=43%  Similarity=0.746  Sum_probs=76.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-eecCCCeEEEEecChh
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAETEA  137 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~-~v~~G~~l~~i~~~~~  137 (479)
                      .+|+||+||++|+||+|.+|+|++||.|++||.|++||+||++++|+|+.+|+|.++++++|+ .|++|++|++|.++++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            489999999999999999999999999999999999999999999999999999999999995 7999999999976554


Q ss_pred             hH
Q 011684          138 EV  139 (479)
Q Consensus       138 ~~  139 (479)
                      +.
T Consensus        83 ~~   84 (464)
T PRK11892         83 SA   84 (464)
T ss_pred             cc
Confidence            43

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.53  E-value=5.5e-14  Score=111.80  Aligned_cols=72  Identities=29%  Similarity=0.548  Sum_probs=69.6

Q ss_pred             EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        61 i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      |.+|+++.++.+|++.+|++++||.|++||+|+.||+||+.++|+||.+|+|.+++++.|+.+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999874

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.49  E-value=2.8e-13  Score=130.53  Aligned_cols=71  Identities=20%  Similarity=0.252  Sum_probs=63.2

Q ss_pred             cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      ....+.+..|..|+        .|+|++||.|++||+|++||+||++++|+|+.+|+|.+|++++|+.|..|++|++|+
T Consensus       203 PmaGtf~r~p~pge--------~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        203 PMAGTFYRSPAPGE--------PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CcCeEEEeccCCCC--------cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            34455555665554        699999999999999999999999999999999999999999999999999999984

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.48  E-value=1.7e-13  Score=108.28  Aligned_cols=61  Identities=25%  Similarity=0.383  Sum_probs=59.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|.+|++++||.|++||+|++||+||+.++|.++.+|+|.++++++|+.|..|++|++|+
T Consensus        10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999884

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.47  E-value=1.6e-13  Score=151.22  Aligned_cols=75  Identities=29%  Similarity=0.432  Sum_probs=72.7

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      .+|+||+||  |+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|++|++.
T Consensus         3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            479999999  999999999999999999999999999999999999999999999999999999999999999765

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.42  E-value=5.2e-13  Score=145.84  Aligned_cols=77  Identities=32%  Similarity=0.613  Sum_probs=74.6

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      .+|.||+||++|++|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|++|++|+.|...
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~   79 (590)
T TIGR02927         3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA   79 (590)
T ss_pred             eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999754

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.41  E-value=8.9e-13  Score=116.10  Aligned_cols=60  Identities=20%  Similarity=0.377  Sum_probs=59.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      |+|.+|++++||.|++||+|+++|+||++++|.||++|+|.++++++||.|..|++|+.|
T Consensus        70 G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         70 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.39  E-value=2.4e-13  Score=94.33  Aligned_cols=38  Identities=47%  Similarity=0.670  Sum_probs=34.3

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCCccchhhHHH
Q 011684          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK  222 (479)
Q Consensus       185 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~  222 (479)
                      ++.+||+||+||+|+|||+++|.|||++|||+++||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            57899999999999999999999999999999999985

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.36  E-value=2.2e-12  Score=116.98  Aligned_cols=60  Identities=27%  Similarity=0.503  Sum_probs=59.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      |+|.+|+|++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus        93 G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         93 GKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             eEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987

>PRK07051 hypothetical protein; Validated

Probab=99.36  E-value=5.6e-12  Score=102.36  Aligned_cols=69  Identities=26%  Similarity=0.382  Sum_probs=63.3

Q ss_pred             EEEecCCCCCCCceEEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEE
Q 011684           59 REIFMPALSSTMTEGKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI  131 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~  131 (479)
                      .+|..| +     .|++.+       |++++||.|++||.|++||+||+.++|+||.+|+|.++++++|+.|..|++|++
T Consensus         4 ~~~~ap-~-----~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~   77 (80)
T PRK07051          4 HEIVSP-L-----PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR   77 (80)
T ss_pred             cEEeCC-C-----ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence            456666 2     278888       999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q 011684          132 LA  133 (479)
Q Consensus       132 i~  133 (479)
                      ++
T Consensus        78 i~   79 (80)
T PRK07051         78 IE   79 (80)
T ss_pred             Ee
Confidence            85

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.34  E-value=3.4e-12  Score=138.81  Aligned_cols=78  Identities=27%  Similarity=0.563  Sum_probs=74.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ++|+||++|+ |.+|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|..|++|+.|.+.+.
T Consensus         3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~   80 (547)
T PRK11855          3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA   80 (547)
T ss_pred             ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence            4799999999 99999999999999999999999999999999999999999999999999999999999999975443

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.31  E-value=5.8e-12  Score=115.00  Aligned_cols=61  Identities=25%  Similarity=0.370  Sum_probs=58.3

Q ss_pred             EEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |++..       |+|++||.|++||+||.||+||+.++|+|+.+|+|.+|+++.|+.|..|++|+.|.
T Consensus        89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            67775       99999999999999999999999999999999999999999999999999999873

The gene name is accB or fabE.

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.30  E-value=6.7e-12  Score=136.10  Aligned_cols=75  Identities=35%  Similarity=0.593  Sum_probs=72.1

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +|+||+||+. .+|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|.+|++|++|...
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~   76 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG   76 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence            6899999987 99999999999999999999999999999999999999999999999999999999999999643

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.30  E-value=1.4e-11  Score=95.40  Aligned_cols=61  Identities=26%  Similarity=0.499  Sum_probs=59.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      .|+|.+|++++||.|++||.|+.||++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus         7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            5999999999999999999999999999999999999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.28  E-value=1.5e-11  Score=133.42  Aligned_cols=62  Identities=24%  Similarity=0.454  Sum_probs=60.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      |+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+.
T Consensus       534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999964

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.25  E-value=1.9e-11  Score=111.55  Aligned_cols=61  Identities=20%  Similarity=0.412  Sum_probs=57.8

Q ss_pred             EEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |++..       |+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|.
T Consensus        88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            56665       99999999999999999999999999999999999999999999999999999873

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.20  E-value=1.9e-10  Score=89.21  Aligned_cols=73  Identities=47%  Similarity=0.816  Sum_probs=70.4

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      ++.+|+++....+|+|.+|++..|+.|..|+.++.+|++|+.+.+.++.+|++.+.++.+|+.+..|++|+.|
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            5889999999999999999999999999999999999999999999999999999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.08  E-value=2.8e-10  Score=124.00  Aligned_cols=57  Identities=28%  Similarity=0.524  Sum_probs=56.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAI  129 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l  129 (479)
                      |+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++++++|+.|.+|++|
T Consensus       526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR02712 urea_carbox urea carboxylase

Probab=99.07  E-value=2.9e-10  Score=133.15  Aligned_cols=61  Identities=23%  Similarity=0.422  Sum_probs=59.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1141 G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.06  E-value=5.8e-10  Score=121.67  Aligned_cols=61  Identities=28%  Similarity=0.531  Sum_probs=59.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|++|+|++||.|++||+|++||+|||+.+|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus       533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  593 (593)
T PRK14040        533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA  593 (593)
T ss_pred             EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999873

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.06  E-value=4.6e-10  Score=130.34  Aligned_cols=61  Identities=26%  Similarity=0.438  Sum_probs=59.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999873

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.98  E-value=7.9e-10  Score=116.03  Aligned_cols=61  Identities=31%  Similarity=0.495  Sum_probs=60.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|+.+.|++|++|.+||+|+++|+|||++.|+||.+|+|.++.+.+|+.|..|++|++++
T Consensus       584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.93  E-value=3e-09  Score=116.29  Aligned_cols=61  Identities=28%  Similarity=0.479  Sum_probs=60.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|++|+|++||+|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       531 G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        531 GTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.89  E-value=4.7e-09  Score=122.46  Aligned_cols=61  Identities=25%  Similarity=0.467  Sum_probs=60.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            9999999999999999999999999999999999999999999999999999999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.89  E-value=1.8e-09  Score=116.68  Aligned_cols=81  Identities=22%  Similarity=0.359  Sum_probs=73.0

Q ss_pred             cccccceeeecceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeec
Q 011684           45 SRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP  124 (479)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~  124 (479)
                      ...+++....+..++--.||        |.|+++.|++||+|++||+|+.+|+|||+..|.||+||+|.+++|..||.|.
T Consensus      1068 ~~~r~KAd~~Np~higApmp--------G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~ 1139 (1149)
T COG1038        1068 VVARRKADPGNPGHIGAPMP--------GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQID 1139 (1149)
T ss_pred             cccccccCCCCccccCCCCC--------CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccc
Confidence            34455566667777777788        9999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEe
Q 011684          125 VGAAIGILA  133 (479)
Q Consensus       125 ~G~~l~~i~  133 (479)
                      .|+.|..++
T Consensus      1140 ~gDLLi~~~ 1148 (1149)
T COG1038        1140 GGDLLVVVE 1148 (1149)
T ss_pred             cCceEEEcc
Confidence            999999874

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.69  E-value=2e-08  Score=106.67  Aligned_cols=82  Identities=21%  Similarity=0.222  Sum_probs=72.5

Q ss_pred             CcccccceeeecceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCee
Q 011684           44 SSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA  123 (479)
Q Consensus        44 ~~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v  123 (479)
                      -.+.|++.++....++--.||        |+|+++.|++|++|+|||+||++.+|||+|-|.||.+|+|+++.+..|+.+
T Consensus      1094 e~v~~PkA~~~~~g~igAPMp--------G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~ 1165 (1176)
T KOG0369|consen 1094 EIVTRPKADPGVKGHIGAPMP--------GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKV 1165 (1176)
T ss_pred             hhcccccCCCCCcccccCCCC--------CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcc
Confidence            345566666655555566677        999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEe
Q 011684          124 PVGAAIGILA  133 (479)
Q Consensus       124 ~~G~~l~~i~  133 (479)
                      ..|+.|++++
T Consensus      1166 ~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1166 EGGDLIVELE 1175 (1176)
T ss_pred             cccceEEEcc
Confidence            9999999885

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.31  E-value=4.6e-07  Score=94.24  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=58.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      |.|.+++|++||+|.+||.|++++.|||+..+++|.+|+|..+.++.|++|..|.+|.++
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~  669 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEF  669 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEe
Confidence            899999999999999999999999999999999999999999999999999999999886

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.30  E-value=1.3e-06  Score=73.26  Aligned_cols=64  Identities=22%  Similarity=0.213  Sum_probs=49.6

Q ss_pred             eEEEecCCCCCCCceEEEEE-EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCe
Q 011684           58 IREIFMPALSSTMTEGKIVS-WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES  122 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~-w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~  122 (479)
                      ...|-|-+.+..+ =|+|.. |++++||.|++||.|+.||++|+..+|.||.+|+|.++..+.++.
T Consensus        15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            3444444444332 367777 666779999999999999999999999999999999987666543

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.05  E-value=7.4e-06  Score=70.40  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=36.4

Q ss_pred             CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCC
Q 011684           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG  120 (479)
Q Consensus        81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g  120 (479)
                      ++|+.|++||+|++||++|+..+|.||.+|+|.+++-+..
T Consensus        39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~   78 (110)
T TIGR03077        39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE   78 (110)
T ss_pred             CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence            6799999999999999999999999999999999864443

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=98.00  E-value=1.1e-05  Score=92.32  Aligned_cols=65  Identities=18%  Similarity=0.387  Sum_probs=60.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .-||+++|+|+.|+.|..||+-++||.|||.|.+.++.+|+| +...++|+.+..|++|+.+..++
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd  756 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD  756 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence            459999999999999999999999999999999999999999 67889999999999999997544

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.96  E-value=3e-05  Score=81.83  Aligned_cols=64  Identities=16%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEec------------------------------------------------ceeeE
Q 011684           73 GKIVSWI-KSEGDVLSKGESVVVVESD------------------------------------------------KADMD  103 (479)
Q Consensus        73 g~i~~w~-v~~Gd~V~~g~~l~~vet~------------------------------------------------K~~~~  103 (479)
                      |.|.+++ +++||.|++||+|++|++.                                                .....
T Consensus       132 G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~~  211 (409)
T PRK09783        132 GFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRFT  211 (409)
T ss_pred             EEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcEE
Confidence            9999998 9999999999999999831                                                01357


Q ss_pred             EEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          104 VETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       104 v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      |+||++|+|.+..+++|+.|..|++|+.|.+.+
T Consensus       212 I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~  244 (409)
T PRK09783        212 LKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  244 (409)
T ss_pred             EECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence            999999999999999999999999999997654

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.93  E-value=2e-05  Score=68.12  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             EEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           74 KIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        74 ~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      .|+.+.. ++|+.|++||.|++||++|+..+|.||.+|+|.++.
T Consensus        33 ~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         33 NILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            3444433 669999999999999999999999999999999985

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.92  E-value=1.6e-05  Score=71.58  Aligned_cols=49  Identities=22%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             EEEEEEEcC-CCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC
Q 011684           73 GKIVSWIKS-EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE  121 (479)
Q Consensus        73 g~i~~w~v~-~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~  121 (479)
                      |.|+.+.+. +|+.|++||.++.||++|+..+|.||.+|+|.++..+..+
T Consensus        44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~   93 (144)
T PRK13380         44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED   93 (144)
T ss_pred             CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence            678888876 8999999999999999999999999999999998866543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.90  E-value=4.2e-05  Score=78.14  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+||++|+|..+.+++|+.|..|++|+.|.+.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  239 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE  239 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence            47999999999999999999999999999997654

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.85  E-value=3.7e-05  Score=78.14  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K-----------------------------------------------------   99 (479)
                      |+|.+++|++||.|++||+|+.++...                                                     
T Consensus        56 G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a~  135 (310)
T PRK10559         56 GLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTVL  135 (310)
T ss_pred             eEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999998621                                                     


Q ss_pred             -----------------eeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          100 -----------------ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       100 -----------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                                       -...|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus       136 a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~  189 (310)
T PRK10559        136 HQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQN  189 (310)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCC
Confidence                             0356999999999999999999999999999987543

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.83  E-value=6e-05  Score=66.60  Aligned_cols=56  Identities=25%  Similarity=0.237  Sum_probs=47.2

Q ss_pred             CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCh
Q 011684           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV---VPEGESAP---VGA-AIGILAETE  136 (479)
Q Consensus        81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~---~~~g~~v~---~G~-~l~~i~~~~  136 (479)
                      ++|++|++||+++.||++|...+|.||.+|+|.++.   .+..+.+.   .|+ -|+.|...+
T Consensus        46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~  108 (127)
T PRK01202         46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD  108 (127)
T ss_pred             CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence            679999999999999999999999999999999994   44445554   565 899987654

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.81  E-value=5.6e-05  Score=76.32  Aligned_cols=65  Identities=20%  Similarity=0.411  Sum_probs=57.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecc----------------------------------------------------
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------   99 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K----------------------------------------------------   99 (479)
                      .|+|.+++|++||.|++||+|+.++..-                                                    
T Consensus        34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~  113 (322)
T TIGR01730        34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA  113 (322)
T ss_pred             cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            3999999999999999999999997521                                                    


Q ss_pred             -------------------eeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          100 -------------------ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       100 -------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                                         ....|+||.+|+|..+.++.|+.+..|++|+.|.+.+
T Consensus       114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  169 (322)
T TIGR01730       114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD  169 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence                               1346999999999999999999999999999997543

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.74  E-value=7e-05  Score=77.19  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=32.1

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~  243 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD  243 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence            46999999999999999999999999999997654

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.64  E-value=0.00012  Score=76.83  Aligned_cols=35  Identities=9%  Similarity=0.093  Sum_probs=32.1

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+||++|+|..+.+++|+.|..|++|+.|.+.+
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~  250 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT  250 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence            47999999999999999999999999999997654

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.59  E-value=0.00022  Score=74.55  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=54.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K-----------------------------------------------------   99 (479)
                      |+|.++++++||.|++||+|+.|+..-                                                     
T Consensus        72 G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~a  151 (385)
T PRK09578         72 GIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQA  151 (385)
T ss_pred             EEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999997531                                                     


Q ss_pred             ------------------eeeEEEcCCCeEEEEEecCCCCeecCC--CeEEEEecC
Q 011684          100 ------------------ADMDVETFYDGILAAIVVPEGESAPVG--AAIGILAET  135 (479)
Q Consensus       100 ------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G--~~l~~i~~~  135 (479)
                                        ....|+||++|+|.+.++++|+.|..|  ++|+.|.+.
T Consensus       152 ~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~  207 (385)
T PRK09578        152 KAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL  207 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence                              024799999999999999999999885  589888654

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.59  E-value=0.00024  Score=74.70  Aligned_cols=63  Identities=22%  Similarity=0.274  Sum_probs=54.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K-----------------------------------------------------   99 (479)
                      |+|.++++++||.|++||+|++|+...                                                     
T Consensus        74 G~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a  153 (397)
T PRK15030         74 GIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA  153 (397)
T ss_pred             EEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999997421                                                     


Q ss_pred             ------------------eeeEEEcCCCeEEEEEecCCCCeecCCCe--EEEEecC
Q 011684          100 ------------------ADMDVETFYDGILAAIVVPEGESAPVGAA--IGILAET  135 (479)
Q Consensus       100 ------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~--l~~i~~~  135 (479)
                                        -...|+||++|+|.+.+++.|+.|..|++  |+.|.+.
T Consensus       154 ~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~  209 (397)
T PRK15030        154 NAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL  209 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence                              03469999999999999999999999985  7777543

>PRK12784 hypothetical protein; Provisional

Probab=97.57  E-value=0.00037  Score=54.94  Aligned_cols=65  Identities=15%  Similarity=0.242  Sum_probs=58.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecceee-EEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADM-DVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~-~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      -.|++.++++.+++.|-+.+.|+-|+++.-.+ .|.--.+|.|..+.+++||.|..++.|+.++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence            46999999999999999999999999965554 488899999999999999999999999999764

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.56  E-value=0.00014  Score=74.39  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ..|+||++|+|..+.+++|+.|..|++|+.|.+.
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~  237 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT  237 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence            5799999999999999999999999999999754

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.51  E-value=0.00032  Score=73.41  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=54.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K-----------------------------------------------------   99 (479)
                      |+|.++++++||.|++||+|++|+...                                                     
T Consensus        70 G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a  149 (385)
T PRK09859         70 GIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEA  149 (385)
T ss_pred             EEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999998530                                                     


Q ss_pred             ------------------eeeEEEcCCCeEEEEEecCCCCeecCCC--eEEEEecC
Q 011684          100 ------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAET  135 (479)
Q Consensus       100 ------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~--~l~~i~~~  135 (479)
                                        ....|+||++|+|.+.+++.|+.|..|+  +|+.|.+.
T Consensus       150 ~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~  205 (385)
T PRK09859        150 EANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL  205 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence                              1257999999999999999999999985  68887653

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=97.51  E-value=5.8e-05  Score=77.78  Aligned_cols=42  Identities=38%  Similarity=0.533  Sum_probs=39.0

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhcc
Q 011684          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (479)
Q Consensus       185 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  226 (479)
                      +.++||.+|++|+++|||+..|+|||++|||+++||++|...
T Consensus         5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~   46 (347)
T PRK14843          5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT   46 (347)
T ss_pred             cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence            556899999999999999999999999999999999999764

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.46  E-value=0.00028  Score=51.83  Aligned_cols=38  Identities=16%  Similarity=0.348  Sum_probs=33.4

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~  138 (479)
                      +..|.+|.+|+|.++++++|+.|..|++|+.+...+-.
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~   39 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ   39 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence            36799999999999999999999999999999765543

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.46  E-value=0.00017  Score=63.66  Aligned_cols=48  Identities=31%  Similarity=0.240  Sum_probs=39.5

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCC
Q 011684           73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG  120 (479)
Q Consensus        73 g~i~~w~-v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g  120 (479)
                      |.|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++.-+.-
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~   84 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALE   84 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhh
Confidence            3444443 25799999999999999999999999999999999874443

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.33  E-value=0.00071  Score=71.63  Aligned_cols=63  Identities=14%  Similarity=0.283  Sum_probs=53.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecc----------------------------------------------------
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------   99 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K----------------------------------------------------   99 (479)
                      .|+|.++++++||.|++||+|++|....                                                    
T Consensus        95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~  174 (415)
T PRK11556         95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE  174 (415)
T ss_pred             cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            3999999999999999999999996420                                                    


Q ss_pred             -------------------eeeEEEcCCCeEEEEEecCCCCeecCCC--eEEEEec
Q 011684          100 -------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAE  134 (479)
Q Consensus       100 -------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~--~l~~i~~  134 (479)
                                         -...|+||++|+|..+.++.|+.|..|+  +|+.|.+
T Consensus       175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~  230 (415)
T PRK11556        175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ  230 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence                               0237999999999999999999999984  6777754

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.28  E-value=0.001  Score=69.26  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             EEEcCCCeEEEEEecCCCCeecCC---CeEEEEecCh
Q 011684          103 DVETFYDGILAAIVVPEGESAPVG---AAIGILAETE  136 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G---~~l~~i~~~~  136 (479)
                      .|+||++|+|..+.++.|+.|..|   ++|+.|.+.+
T Consensus       185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~  221 (370)
T PRK11578        185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS  221 (370)
T ss_pred             EEECCCCcEEEeeecCCCcEeecccCCceEEEEecCC
Confidence            799999999999999999999765   4788886543

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.22  E-value=0.00035  Score=51.35  Aligned_cols=28  Identities=29%  Similarity=0.531  Sum_probs=25.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDK   99 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K   99 (479)
                      .|+|.+|+|++||.|++||+|++++...
T Consensus        10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen   10 SGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             CEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            3999999999999999999999998754

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.18  E-value=0.00036  Score=70.61  Aligned_cols=64  Identities=23%  Similarity=0.464  Sum_probs=47.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecce---------------------------------------------------
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------  100 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~---------------------------------------------------  100 (479)
                      .|+| +|+|++||.|++||+|+.+++...                                                   
T Consensus        29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  107 (328)
T PF12700_consen   29 SGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAIS  107 (328)
T ss_dssp             -EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTSS
T ss_pred             CEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhhH
Confidence            3999 999999999999999999995311                                                   


Q ss_pred             ----------------ee----------EEEcCCCeEEE-------------------------EEecCCCCeecCCCeE
Q 011684          101 ----------------DM----------DVETFYDGILA-------------------------AIVVPEGESAPVGAAI  129 (479)
Q Consensus       101 ----------------~~----------~v~ap~~G~v~-------------------------~i~~~~g~~v~~G~~l  129 (479)
                                      ..          .|.||++|+|.                         ++.+++|+.|..|++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l  187 (328)
T PF12700_consen  108 KEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPL  187 (328)
T ss_dssp             TCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCS
T ss_pred             HHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCcee
Confidence                            11          39999999999                         9999999999999999


Q ss_pred             EEEecCh
Q 011684          130 GILAETE  136 (479)
Q Consensus       130 ~~i~~~~  136 (479)
                      +.|.+..
T Consensus       188 ~~i~~~~  194 (328)
T PF12700_consen  188 FTIADLS  194 (328)
T ss_dssp             EEEEEES
T ss_pred             eeeccCC
Confidence            9997653

...

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.10  E-value=0.0012  Score=57.97  Aligned_cols=44  Identities=30%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        73 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      |.|+.+.. ++|++|++|++++.||+.|...++.||.+|+|.++.
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN   75 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN   75 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence            33433333 569999999999999999999999999999999885

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.02  E-value=0.0015  Score=66.63  Aligned_cols=33  Identities=27%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .|+||++|+|..+.+..|+.|.. ++|+.|.+.+
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence            68999999999999999999986 8898887543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=96.95  E-value=0.0024  Score=62.45  Aligned_cols=70  Identities=27%  Similarity=0.406  Sum_probs=57.1

Q ss_pred             cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      +...+-|.-|.      .|.+. ..++.||.|+|||+|+.|+.    .+|+||.+|+|.. ++.+|-.|..|.-|+.|.+
T Consensus       161 ~~~Er~IrAp~------~Gi~~-~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDP  228 (256)
T TIGR03309       161 YTHERVLRAPA------DGIVT-PTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDP  228 (256)
T ss_pred             ccceEEEECCC------CeEEe-eccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECC
Confidence            34456666662      25554 49999999999999999974    7999999999976 6799999999999999976


Q ss_pred             Ch
Q 011684          135 TE  136 (479)
Q Consensus       135 ~~  136 (479)
                      -.
T Consensus       229 R~  230 (256)
T TIGR03309       229 RG  230 (256)
T ss_pred             CC
Confidence            44

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.93  E-value=0.0017  Score=57.10  Aligned_cols=37  Identities=35%  Similarity=0.348  Sum_probs=34.8

Q ss_pred             CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEec
Q 011684           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV  117 (479)
Q Consensus        81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~  117 (479)
                      ++|++|++|+.++.||+-|+..+|.||.+|.|.++.-
T Consensus        48 e~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~   84 (131)
T COG0509          48 EVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNE   84 (131)
T ss_pred             CCCCeecCCCeEEEEEeeeeeccccCCCceeEEEech
Confidence            7899999999999999999999999999999988763

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=96.58  E-value=0.0036  Score=53.08  Aligned_cols=53  Identities=21%  Similarity=0.297  Sum_probs=42.5

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      .+.+| |.  ..-|.-.+-.|++||+|.+||.|++.+ +-+...|.|+.+|+|..|.
T Consensus        29 ~v~ip-L~--qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   29 KVVIP-LR--QHIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             EEEEE-Cc--ccCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence            44455 32  334666789999999999999999997 4668899999999999875

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.54  E-value=0.0043  Score=48.87  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .|+||..|+|.++++++||.|..|++|+.++...
T Consensus         4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K   37 (71)
T PRK05889          4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK   37 (71)
T ss_pred             EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            5999999999999999999999999999997654

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=96.41  E-value=0.0059  Score=60.04  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +.|+||++|+|..+.+.+|+.|..|++|+.|.+..
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~  123 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG  123 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence            45899999999999999999999999999987643

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.41  E-value=0.013  Score=61.60  Aligned_cols=34  Identities=15%  Similarity=0.239  Sum_probs=30.1

Q ss_pred             eEEEcCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 011684          102 MDVETFYDGILAAIVV-PEGESAPVGAAIGILAET  135 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~-~~g~~v~~G~~l~~i~~~  135 (479)
                      ..|+||++|+|..+.+ .+|+.|..|++|+.|.+.
T Consensus       272 ~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~  306 (423)
T TIGR01843       272 LIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE  306 (423)
T ss_pred             cEEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence            3599999999999876 799999999999999754

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=96.40  E-value=0.011  Score=61.04  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|+||.+|+|.+..+..|+.|..|++|+.+.+.+
T Consensus       208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~  243 (352)
T COG1566         208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD  243 (352)
T ss_pred             CCEEECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence            355999999999999999999999999999987644

>PRK06748 hypothetical protein; Validated

Probab=95.90  E-value=0.014  Score=47.62  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=30.6

Q ss_pred             EEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      .|.||..|+|.++++++||.|..|++|++|+.
T Consensus         6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            38999999999999999999999999999987

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.90  E-value=0.026  Score=57.12  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe---cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES---DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet---~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      +=+.+..++.||.|++||+|++|=.   +....+|.||.+|+|..  ....-.|..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence            4467788999999999999999964   45677899999999954  4566788999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=95.65  E-value=0.033  Score=57.89  Aligned_cols=59  Identities=15%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      .|=+.+++++.||.|++||+|++|-.    +....+|.||.+|+|.  .....-.|..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence            35577899999999999999999864    3345557999999994  45677788999998876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.56  E-value=0.047  Score=55.72  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      +=+....++.||.|++||+|++|-.    .....+|.||.+|+|.-  ....-.|..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence            4477889999999999999999865    34567899999999954  34445688899988875

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.55  E-value=0.046  Score=55.01  Aligned_cols=56  Identities=18%  Similarity=0.301  Sum_probs=44.8

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEe--cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           75 IVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        75 i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      +.++.++.||.|++||+|+.|..  .....+|+||.+|+|..  ....-.|..|+.|+.|
T Consensus       229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i  286 (287)
T cd06251         229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI  286 (287)
T ss_pred             EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence            45679999999999999999964  23347899999999944  4566678888888876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2

Probab=95.51  E-value=0.3  Score=52.40  Aligned_cols=40  Identities=30%  Similarity=0.379  Sum_probs=35.1

Q ss_pred             EEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhC
Q 011684          284 RVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQH  323 (479)
Q Consensus       284 ~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~  323 (479)
                      +....|+-+.+.++++.+|++|+|++.+|..+++.||.+.
T Consensus       251 ~~~~~i~~~~~~~ll~~CR~~~~TlT~~L~al~~~al~~~  290 (480)
T PF07247_consen  251 YRSLSISPEELKKLLKACRKHGTTLTALLHALIALALSKV  290 (480)
T ss_pred             EEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence            4566888888999999999999999999999999999963

3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.40  E-value=0.025  Score=43.04  Aligned_cols=31  Identities=23%  Similarity=0.476  Sum_probs=29.3

Q ss_pred             EEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684          104 VETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       104 v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      |.||.+|+|.++++++|+.|..|++|+.++.
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~   32 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA   32 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            6899999999999999999999999999974

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.40  E-value=0.033  Score=43.57  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=31.3

Q ss_pred             EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .|.||..|+|.++++++|+.|..|++|+.++...
T Consensus         3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k   36 (70)
T PRK08225          3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK   36 (70)
T ss_pred             eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            5899999999999999999999999999997644

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=95.16  E-value=0.06  Score=55.17  Aligned_cols=58  Identities=26%  Similarity=0.350  Sum_probs=46.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      +=+....++.||.|++||+|++|-.    .....+|.||.+|+|..  ....-.|..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence            3456788999999999999999964    23467899999999965  4556788889988876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=95.03  E-value=0.034  Score=49.96  Aligned_cols=36  Identities=17%  Similarity=0.280  Sum_probs=33.0

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|+||..|++.+++|++||.|..||.||.|+...
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMK  105 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMK  105 (140)
T ss_pred             CceEecCcceEEEEEeeccCCEEcCCCEEEEEEeee
Confidence            467999999999999999999999999999998654

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.99  E-value=0.035  Score=46.65  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=28.6

Q ss_pred             EEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +|+||++|+|..+.+++|+.|..|++|+.|.+.
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            378999999999999999999999999988765

>COG3608 Predicted deacylase [General function prediction only]

Probab=94.80  E-value=0.052  Score=55.22  Aligned_cols=60  Identities=15%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEec---ceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESD---KADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~---K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      ++=+++.+|+.||+|++||+|+.|-..   +...||+|+.+|+|..+.  ---.|..|+.++.+.
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v~  325 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVVG  325 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeeec
Confidence            345899999999999999999988764   889999999999997663  123345556666554

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=94.72  E-value=0.042  Score=49.72  Aligned_cols=46  Identities=26%  Similarity=0.441  Sum_probs=35.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EEcCCCeEEEEEe
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAIV  116 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-v~ap~~G~v~~i~  116 (479)
                      .||..+-..+.+||.|.+||.|+.|.|-|-++. ++||.+|+|.-+.
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            367788899999999999999999999999887 9999999997654

; PDB: 3D4R_D.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=94.54  E-value=0.039  Score=54.23  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecce--eeEEEcCCCeEEEEEec
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKA--DMDVETFYDGILAAIVV  117 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~--~~~v~ap~~G~v~~i~~  117 (479)
                      |..-+.+|+|||+|++||+|++   ||-  .+-+.||.+|+|.+|.-
T Consensus        38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R   81 (257)
T PF05896_consen   38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR   81 (257)
T ss_pred             CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence            4446899999999999999997   665  45589999999998764

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=94.22  E-value=0.085  Score=46.75  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=32.9

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.||.+|+|.++++++||.|..|++|+.++...
T Consensus        61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK   96 (130)
T PRK06549         61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK   96 (130)
T ss_pred             CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence            567999999999999999999999999999997643

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.22  E-value=0.1  Score=52.48  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=40.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe--cceeeEEEcCCCeEEEEEecCCCCeecCCCeE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAI  129 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l  129 (479)
                      +=+.+.+++.||.|++||+|++|-.  .....+|.||++|+|.-+.  ..-.|..|+.|
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l  287 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL  287 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence            4577888999999999999999843  3446789999999996543  33455555554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=94.17  E-value=0.079  Score=42.04  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             EEEcCCCeEEEE------EecCCCCeecCCCeEEEEecCh
Q 011684          103 DVETFYDGILAA------IVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       103 ~v~ap~~G~v~~------i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +|++|..|.+..      +++++|+.|..|++|+.|+...
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K   41 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMK   41 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSS
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCc
Confidence            678888887655      9999999999999999997654

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK07051 hypothetical protein; Validated

Probab=93.64  E-value=0.096  Score=42.26  Aligned_cols=26  Identities=19%  Similarity=0.606  Sum_probs=24.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~ve   96 (479)
                      ..|+|.+|++++||.|+.||+|++++
T Consensus        54 ~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         54 AAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            45999999999999999999999985

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=93.57  E-value=0.074  Score=53.11  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~  138 (479)
                      ..|.++..|+|.+|+|++|+.|..|++|+.|.+..-.
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~   38 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTDYE   38 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HHHH
T ss_pred             EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeeccc
Confidence            4789999999999999999999999999999865533

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.54  E-value=0.17  Score=52.13  Aligned_cols=42  Identities=14%  Similarity=0.235  Sum_probs=36.4

Q ss_pred             EEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        93 ~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +.||.+  .+.|.++.+|+|.++++++|+.|..|++|+.|....
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~   83 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRP   83 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcHH
Confidence            445554  688999999999999999999999999999997654

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.35  E-value=0.14  Score=46.76  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=32.4

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.||..|+|.++++++||.|..||+|+.++...
T Consensus        84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK  119 (153)
T PRK05641         84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK  119 (153)
T ss_pred             CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence            356999999999999999999999999999996543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=93.30  E-value=0.13  Score=52.41  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      .+.|.++.+|+|.++++++|+.|..|++|+.|+..+-
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~~   78 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTNA   78 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchHH
Confidence            6889999999999999999999999999999976543

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=93.12  E-value=0.27  Score=52.14  Aligned_cols=58  Identities=19%  Similarity=0.200  Sum_probs=44.8

Q ss_pred             EcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        79 ~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      .++.|+.-..=+....|+. .-.+.|.++.+|+|.++++++|+.|..|++|+.|.+.+-
T Consensus        66 ~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~  123 (415)
T PRK11556         66 TATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPF  123 (415)
T ss_pred             EEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHH
Confidence            3444444333445667776 356889999999999999999999999999999976543

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=92.98  E-value=0.3  Score=58.06  Aligned_cols=80  Identities=14%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             ceeEEEecCCCCCCCc----------eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecC
Q 011684           56 SKIREIFMPALSSTMT----------EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPV  125 (479)
Q Consensus        56 ~~~~~i~~P~l~~~~~----------eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~  125 (479)
                      .+...|++-.+|+...          .|+..++.++.|+.+..++.....+. .-...|.||..|+|.++++++||.|..
T Consensus      1020 g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~~ 1098 (1143)
T TIGR01235      1020 GKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVNK 1098 (1143)
T ss_pred             CcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeCC
Confidence            3445555555554332          25677888888888887776554432 224569999999999999999999999


Q ss_pred             CCeEEEEecCh
Q 011684          126 GAAIGILAETE  136 (479)
Q Consensus       126 G~~l~~i~~~~  136 (479)
                      |++|++|+...
T Consensus      1099 Gd~L~~iEamK 1109 (1143)
T TIGR01235      1099 GDPLVVLEAMK 1109 (1143)
T ss_pred             CCEEEEEEecc
Confidence            99999998644

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=92.92  E-value=0.33  Score=50.76  Aligned_cols=57  Identities=16%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             EcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        79 ~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .++.|+....-+....|+..+ ..+|.++.+|+|.++++++|+.|..|++|+.|++.+
T Consensus        40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~   96 (385)
T PRK09859         40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAP   96 (385)
T ss_pred             EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHH
Confidence            344555444555667777554 678999999999999999999999999999997654

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=92.84  E-value=0.17  Score=51.62  Aligned_cols=43  Identities=16%  Similarity=0.262  Sum_probs=36.5

Q ss_pred             EEEecceeeEEEcCCC---eEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           94 VVESDKADMDVETFYD---GILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        94 ~vet~K~~~~v~ap~~---G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .|+...-...|.++.+   |+|.+|+|++|+.|..|++|+.|.+..
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~   51 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP   51 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence            4454444567899999   999999999999999999999998754

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=92.32  E-value=0.13  Score=51.35  Aligned_cols=28  Identities=18%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDK   99 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K   99 (479)
                      .|.|.+++|++||.|++||+|+++..-.
T Consensus         9 ~G~V~~i~V~eG~~VkkGq~L~~LD~~~   36 (305)
T PF00529_consen    9 GGIVTEILVKEGQRVKKGQVLARLDPTD   36 (305)
T ss_dssp             -EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred             CeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence            3999999999999999999999998543

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=91.99  E-value=0.3  Score=49.15  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +..|.+|.+|+|.++++++|+.|..|++|+.+...+
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~   61 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDD   61 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHH
Confidence            568999999999999999999999999999997654

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=91.80  E-value=0.19  Score=50.62  Aligned_cols=42  Identities=21%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             EEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           92 VVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        92 l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      -+.|+.  -+..|.++.+|+| ++++++|+.|..|++|+.+....
T Consensus        14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~   55 (328)
T PF12700_consen   14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD   55 (328)
T ss_dssp             EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred             EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence            344554  4578999999999 99999999999999999997654

...

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=91.79  E-value=0.35  Score=50.23  Aligned_cols=60  Identities=17%  Similarity=0.234  Sum_probs=42.5

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           75 IVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        75 i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +.-+.++.|+.-..=..-+.|+.. -...|.++.+|.|.++++++|+.|..|++|+.+...
T Consensus        36 v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   95 (370)
T PRK11578         36 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   95 (370)
T ss_pred             eEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            333444444433222234455544 356899999999999999999999999999999654

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=91.53  E-value=0.18  Score=53.77  Aligned_cols=45  Identities=16%  Similarity=0.151  Sum_probs=38.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      ..|.--+.+|++||+|++||+|++-+. -...-|.||.+|+|..|.
T Consensus        36 ~~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~   80 (447)
T TIGR01936        36 FVGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAIN   80 (447)
T ss_pred             cCCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEe
Confidence            346667899999999999999998542 257889999999999994

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=91.53  E-value=0.45  Score=49.78  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=42.4

Q ss_pred             cCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        80 v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ++.|+.-..-..-..|+.. -..+|.++.+|+|.++++++||.|..|++|+.|.+.+
T Consensus        43 v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~   98 (385)
T PRK09578         43 VRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAP   98 (385)
T ss_pred             EEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHH
Confidence            3334433333445666654 3679999999999999999999999999999996544

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.50  E-value=0.4  Score=51.42  Aligned_cols=40  Identities=8%  Similarity=0.079  Sum_probs=34.6

Q ss_pred             cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           98 DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        98 ~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      +.-...|.++..|+|.+|+|++||.|..|++|+.+.+...
T Consensus        56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~   95 (457)
T TIGR01000        56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGNE   95 (457)
T ss_pred             cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence            3335678999999999999999999999999999976653

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=91.46  E-value=0.36  Score=50.71  Aligned_cols=37  Identities=14%  Similarity=0.208  Sum_probs=34.2

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      .+.|.++.+|+|.++++++|+.|+.|++|+.|++.+-
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~~   97 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDA   97 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHHH
Confidence            7889999999999999999999999999999976543

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=91.37  E-value=0.37  Score=48.99  Aligned_cols=36  Identities=8%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      +.|.++.+|+|.++++++||.|..|++|+.+++.+-
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~   83 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRY   83 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHH
Confidence            669999999999999999999999999999976553

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=91.09  E-value=0.2  Score=53.53  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=36.6

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      |.--+..|++||+|++||+|++.+ ......|.||.+|+|.+|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            455678999999999999999983 4468899999999998873

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=90.90  E-value=0.2  Score=51.04  Aligned_cols=38  Identities=29%  Similarity=0.321  Sum_probs=32.7

Q ss_pred             EEEcCCCCeecCCCeEEEEEecce--eeEEEcCCCeEEEEEec
Q 011684           77 SWIKSEGDVLSKGESVVVVESDKA--DMDVETFYDGILAAIVV  117 (479)
Q Consensus        77 ~w~v~~Gd~V~~g~~l~~vet~K~--~~~v~ap~~G~v~~i~~  117 (479)
                      .++|++||.|++||+|+|   ||-  .+-+.||.+|+|..|+-
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~R   81 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHR   81 (447)
T ss_pred             cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeec
Confidence            578999999999999997   664  45689999999998863

>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics

Probab=90.78  E-value=2.3  Score=41.31  Aligned_cols=31  Identities=16%  Similarity=0.200  Sum_probs=25.1

Q ss_pred             EEEEEEecccccchHHHHHHHHHHHHHhcCC
Q 011684          444 MLVNVTADHRIIYGADLAAFLQTFSKIVENP  474 (479)
Q Consensus       444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p  474 (479)
                      .-|-+.+||-++||.-...|+++|.+++++.
T Consensus       129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~  159 (301)
T PF00668_consen  129 YFLLISFHHIICDGWSLNILLRELLQAYAGL  159 (301)
T ss_dssp             EEEEEEEEGGG--HHHHHHHHHHHHHHHHHH
T ss_pred             chhcccccccccccccchhhhhhhHHhhhcc
Confidence            5567889999999999999999999887653

This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=90.70  E-value=0.48  Score=50.21  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=33.5

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ...|.++.+|+|.+++|++|+.|..|++|+.|.+...
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~   94 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPEL   94 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence            4589999999999999999999999999999976543

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=90.65  E-value=0.3  Score=49.91  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=33.3

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .+.|.++..|+|.++++++||.|..|++|+.|....
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~   78 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAP   78 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence            678999999999999999999999999999997653

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=90.54  E-value=0.23  Score=55.93  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=40.2

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      .+.+| |..  +-|.-.+.+|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus        36 ~~~ip-l~q--hiG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         36 RLVIP-LKQ--HIGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             EEEEE-Ccc--CCCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            45555 332  33556679999999999999999653 3356889999999998863

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.53  E-value=0.42  Score=50.07  Aligned_cols=45  Identities=24%  Similarity=0.281  Sum_probs=38.6

Q ss_pred             EEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        93 ~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ..|...+....|.++.+|+|.+++|++||.|..|++|+.+.....
T Consensus        35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~   79 (423)
T TIGR01843        35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATDV   79 (423)
T ss_pred             eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence            355566777779999999999999999999999999999976543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=90.34  E-value=0.22  Score=53.31  Aligned_cols=44  Identities=20%  Similarity=0.244  Sum_probs=37.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      .|.--+.+|++||+|++||.|++-... ....|.||.+|+|+.|.
T Consensus        38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~   81 (448)
T PRK05352         38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN   81 (448)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence            366678999999999999999965432 56889999999999994

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=90.18  E-value=0.84  Score=46.10  Aligned_cols=43  Identities=21%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe--cceeeEEEcCCCeEEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAI  115 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~v~ap~~G~v~~i  115 (479)
                      +=|.+..++.||.|++||+|++|-.  .....++.||.+|+|..+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            3456677888888888888888753  122456788888888554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=90.13  E-value=0.26  Score=39.38  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=19.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      -+.=+.++++.||.|++||+||+|=++
T Consensus        30 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~   56 (75)
T PF07831_consen   30 PAVGIELHKKVGDRVEKGDPLATIYAN   56 (75)
T ss_dssp             TT-EEEESS-TTSEEBTTSEEEEEEES
T ss_pred             cCcCeEecCcCcCEECCCCeEEEEEcC
Confidence            344468888999999999999888654

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=89.59  E-value=0.25  Score=44.87  Aligned_cols=39  Identities=31%  Similarity=0.273  Sum_probs=36.2

Q ss_pred             CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCC
Q 011684           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE  119 (479)
Q Consensus        81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~  119 (479)
                      ++|-.|.+||.++.||+-|+.-+|.+|.+|.|.+|.-+-
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l  127 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL  127 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence            789999999999999999999999999999999997543

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=89.58  E-value=1.1  Score=47.04  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=36.8

Q ss_pred             EEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        93 ~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+. .-..+|.+..+|+|.++++++||.|..|++|+.|++.+
T Consensus        58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~  100 (397)
T PRK15030         58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT  100 (397)
T ss_pred             EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence            45554 34688999999999999999999999999999997654

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=89.31  E-value=1.3  Score=39.03  Aligned_cols=19  Identities=21%  Similarity=0.197  Sum_probs=16.9

Q ss_pred             ecCCCCeecCCCeEEEEec
Q 011684          116 VVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       116 ~~~~g~~v~~G~~l~~i~~  134 (479)
                      ++++||.|..|++|+.+.-
T Consensus        85 ~vk~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          85 HVEEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             EecCCCEEcCCCEEEEEcH
Confidence            6899999999999999853

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=88.91  E-value=0.95  Score=50.14  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=32.4

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      -+|.||..|+|.++++++||.|..|++|++++...
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK  560 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK  560 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence            36999999999999999999999999999998654

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=88.62  E-value=1.4  Score=44.08  Aligned_cols=59  Identities=24%  Similarity=0.295  Sum_probs=47.9

Q ss_pred             EEEEEEEcCCCCeecCCCeE--EEEEe--cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESV--VVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l--~~vet--~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      +=+....++.||.|++||+|  ..+-.  +....+|++|.+|+|  +.....-.|..|+.|+.+.
T Consensus       228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~  290 (292)
T PF04952_consen  228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA  290 (292)
T ss_dssp             SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred             cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence            44678999999999999999  54432  233568999999999  5678888999999999875

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=88.34  E-value=1  Score=47.66  Aligned_cols=46  Identities=13%  Similarity=0.125  Sum_probs=37.1

Q ss_pred             eEEEEEecc-eeeEEEcCCCeEEEEEe-cCCCCeecCCCeEEEEecCh
Q 011684           91 SVVVVESDK-ADMDVETFYDGILAAIV-VPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        91 ~l~~vet~K-~~~~v~ap~~G~v~~i~-~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..+.|+.+. -...|.++.+|+|.+++ +.+||.|..||+|+.|...+
T Consensus       112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe  159 (409)
T PRK09783        112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD  159 (409)
T ss_pred             EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence            345555432 35679999999999998 99999999999999997543

>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT

Probab=88.25  E-value=8.1  Score=40.90  Aligned_cols=164  Identities=15%  Similarity=0.145  Sum_probs=86.2

Q ss_pred             EEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCC-------C----
Q 011684          285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAING-------G----  353 (479)
Q Consensus       285 ~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~-------g----  353 (479)
                      ....+++..|.++.+   ..|.|++.+++-|++.+|.++  ++.+   | . ...+.+.+++.|....       |    
T Consensus       232 ~~~~~~~~~l~~~a~---~~g~T~ndvllaa~~~al~~~--~~~~---~-~-~~~~~i~~~~pv~~R~~~~~~~~~N~~~  301 (446)
T TIGR02946       232 AAQSLPLADVKAVAK---AFGVTINDVVLAAVAGALRRY--LEER---G-E-LPDDPLVAMVPVSLRPMEDDSEGGNQVS  301 (446)
T ss_pred             EeeccCHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHH--HHHc---C-C-CCCCceEEEEeeeccccccCCCCCCEEE
Confidence            455677767655543   349999999999999999875  2211   1 1 1234477777776411       1    


Q ss_pred             eEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCC-------------CC-------------CCCCCCeEEEeecCCCCcc
Q 011684          354 LITPVLQDADKLDLYLLSQKWKELVEKARSKQL-------------QP-------------HEYNSGTFTLSNLGMFGVD  407 (479)
Q Consensus       354 l~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l-------------~~-------------~d~~~~tftISnlg~~G~~  407 (479)
                      .+...+. ....+..+..+++++....+++...             -+             .....-++.|||+|.....
T Consensus       302 ~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNvpg~~~~  380 (446)
T TIGR02946       302 AVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNVPGPREP  380 (446)
T ss_pred             EEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCCCCCCcc
Confidence            1111121 1233444444555554444443210             00             0011247889999754321


Q ss_pred             ---------ceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684          408 ---------RFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVEN  473 (479)
Q Consensus       408 ---------~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~  473 (479)
                               .+.++.+......++++-..      -+|      .|.+++++|-.++..  ..+|.+.|++.|+.
T Consensus       381 ~~~~g~~v~~~~~~~p~~~~~~l~~~~~s------y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~  441 (446)
T TIGR02946       381 LYLAGAKLDELYPLSPLLDGQGLNITVTS------YNG------QLDFGLLADRDAVPD--PQELADALEAALEE  441 (446)
T ss_pred             cEecCeeEEEeeccccccCCCeEEEEEEe------cCC------eEEEEEeechhhCCC--HHHHHHHHHHHHHH
Confidence                     11222221111122222111      034      489999999988874  66777777776653

This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=87.93  E-value=0.5  Score=43.23  Aligned_cols=26  Identities=27%  Similarity=0.593  Sum_probs=23.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~ve   96 (479)
                      ..|+|.+|+++.||.|+.||+|++|+
T Consensus       131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       131 VAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            36899999999999999999999985

The gene name is accB or fabE.

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.52  E-value=1.2  Score=39.44  Aligned_cols=45  Identities=27%  Similarity=0.415  Sum_probs=40.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EEcCCCeEEEEE
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAI  115 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-v~ap~~G~v~~i  115 (479)
                      .||-++-..+..|+.|.+||+++-|.|-|.++. +++|.+|+|.-+
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi  143 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI  143 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence            468889999999999999999999999999887 899999999654

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=87.49  E-value=0.6  Score=42.66  Aligned_cols=26  Identities=19%  Similarity=0.437  Sum_probs=24.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~ve   96 (479)
                      ..|+|++|+++.||.|..||+|++|+
T Consensus       130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        130 KSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            46899999999999999999999885

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=87.30  E-value=1.3  Score=41.02  Aligned_cols=66  Identities=29%  Similarity=0.410  Sum_probs=50.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE-------------------
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------  115 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i-------------------  115 (479)
                      ..|.-| +.     |+++.+. ++-|.|=.    ||-+++.=++   ..|.||.+|+|..+                   
T Consensus        21 ~~i~aP-~~-----G~vi~L~-~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLI   90 (169)
T PRK09439         21 IEIIAP-LS-----GEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV   90 (169)
T ss_pred             eEEEec-CC-----eEEEEhH-HCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            456666 33     7777765 55665554    8888876654   67899999998877                   


Q ss_pred             ----------------ecCCCCeecCCCeEEEEec
Q 011684          116 ----------------VVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       116 ----------------~~~~g~~v~~G~~l~~i~~  134 (479)
                                      ++++||.|..|++|+++.-
T Consensus        91 HiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439         91 HFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             EEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence                            6899999999999999853

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=87.30  E-value=0.91  Score=48.10  Aligned_cols=27  Identities=22%  Similarity=0.323  Sum_probs=25.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K   99 (479)
                      |.|.+++|++||.|++||+|+.|+...
T Consensus        67 G~V~~i~V~eG~~V~kGq~L~~l~~~~   93 (421)
T TIGR03794        67 GVVIDLDVEVGDQVKKGQVVARLFQPE   93 (421)
T ss_pred             eEEEEEECCCcCEECCCCEEEEECcHH
Confidence            999999999999999999999998653

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=87.27  E-value=0.87  Score=48.84  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      |.|.+++|++||.|++||+|+.+...
T Consensus        68 G~v~~i~V~eG~~V~~G~~L~~ld~~   93 (457)
T TIGR01000        68 NAIKENYLKENKFVKKGDLLVVYDNG   93 (457)
T ss_pred             cEEEEEEcCCCCEecCCCEEEEECch
Confidence            99999999999999999999999754

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=87.24  E-value=0.79  Score=45.23  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=31.6

Q ss_pred             eEEEcCCCeEEEE-------EecCCCCeecCCCeEEEEecChh
Q 011684          102 MDVETFYDGILAA-------IVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus       102 ~~v~ap~~G~v~~-------i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ..|.||..|++.+       +++++||.|..|++|+.|+...-
T Consensus       198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm  240 (274)
T PLN02983        198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL  240 (274)
T ss_pred             CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence            4589999999999       59999999999999999986543

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=86.99  E-value=1.3  Score=39.34  Aligned_cols=58  Identities=26%  Similarity=0.388  Sum_probs=40.9

Q ss_pred             EEEEEEEcCCCCee----cCCCeEEEEEecceeeEEEcCCCeEEEEE---------------------------------
Q 011684           73 GKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI---------------------------------  115 (479)
Q Consensus        73 g~i~~w~v~~Gd~V----~~g~~l~~vet~K~~~~v~ap~~G~v~~i---------------------------------  115 (479)
                      |+++.+. +.-|.+    --||-++..=++.   .|.||++|+|..+                                 
T Consensus        11 G~vi~l~-~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF   86 (132)
T PF00358_consen   11 GKVIPLE-EVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGF   86 (132)
T ss_dssp             EEEEEGG-GSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTE
T ss_pred             cEEEEhh-hCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcce
Confidence            6666543 455555    3467777665443   6889999999888                                 


Q ss_pred             --ecCCCCeecCCCeEEEEec
Q 011684          116 --VVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       116 --~~~~g~~v~~G~~l~~i~~  134 (479)
                        ++++||.|..|++|+.+.-
T Consensus        87 ~~~v~~G~~V~~G~~L~~~D~  107 (132)
T PF00358_consen   87 ETLVKEGDKVKAGQPLIEFDL  107 (132)
T ss_dssp             EESS-TTSEE-TTEEEEEE-H
T ss_pred             EEEEeCCCEEECCCEEEEEcH
Confidence              7889999999999999853

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=86.41  E-value=0.56  Score=50.31  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=41.6

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      .++.+| |...  -|.=...+|++||+|.+||+|.+=+.  ...-+.||.+|+|.+|.
T Consensus        31 ~~~~iP-l~qh--~g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          31 QRALIP-LKQH--IGAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEe-eecc--cCCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            345556 3322  23336789999999999999998765  88999999999999986

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=86.04  E-value=1.9  Score=37.79  Aligned_cols=19  Identities=21%  Similarity=0.223  Sum_probs=17.1

Q ss_pred             EecCCCCeecCCCeEEEEe
Q 011684          115 IVVPEGESAPVGAAIGILA  133 (479)
Q Consensus       115 i~~~~g~~v~~G~~l~~i~  133 (479)
                      .++++||.|..|++|+++.
T Consensus        84 ~~v~~Gd~V~~G~~l~~~D  102 (121)
T TIGR00830        84 SHVEEGQRVKKGDPLLEFD  102 (121)
T ss_pred             EEecCCCEEcCCCEEEEEc
Confidence            3789999999999999985

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=85.96  E-value=3  Score=41.84  Aligned_cols=47  Identities=26%  Similarity=0.316  Sum_probs=37.5

Q ss_pred             CCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           88 KGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        88 ~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      .-.....++. .-..+|.++..|.|.++++++||.|..|++|+.+++.
T Consensus        54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~  100 (372)
T COG0845          54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS  100 (372)
T ss_pred             ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence            3344445554 3344788889999999999999999999999999873

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=85.81  E-value=1.2  Score=47.71  Aligned_cols=28  Identities=25%  Similarity=0.556  Sum_probs=25.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      ..|+|.+|++++||.|..||+|+.|+.+
T Consensus       141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        141 ASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            4699999999999999999999999853

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=85.53  E-value=0.74  Score=37.78  Aligned_cols=23  Identities=26%  Similarity=0.697  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEe
Q 011684           75 IVSWIKSEGDVLSKGESVVVVES   97 (479)
Q Consensus        75 i~~w~v~~Gd~V~~g~~l~~vet   97 (479)
                      =++|++++||.|++||+|++++-
T Consensus        46 ~v~~~~~dG~~v~~g~~i~~i~G   68 (88)
T PF02749_consen   46 EVEWLVKDGDRVEPGDVILEIEG   68 (88)
T ss_dssp             EEEESS-TT-EEETTCEEEEEEE
T ss_pred             EEEEEeCCCCCccCCcEEEEEEe
Confidence            35699999999999999999984

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=85.19  E-value=1.8  Score=40.81  Aligned_cols=53  Identities=23%  Similarity=0.335  Sum_probs=42.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG  130 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~  130 (479)
                      ++|+. .+++|+.|++||.+..++-. .++++--|.+   .++.+++|+.|..|+.|.
T Consensus       130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli  182 (189)
T TIGR00164       130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL  182 (189)
T ss_pred             cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence            34544 45899999999999999966 6777777766   277899999999999653

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=84.90  E-value=1.9  Score=47.88  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.7

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.||..|+|.++++++||.|..|++|+.++...
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK  559 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK  559 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence            457999999999999999999999999999997544

>PF13437 HlyD_3: HlyD family secretion protein

Probab=84.39  E-value=1.8  Score=36.07  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      ..|.|..|.+++|+.|..|+.|+.|..+
T Consensus         6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    6 FDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            3599999999999999999999999853

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=84.15  E-value=2.1  Score=40.92  Aligned_cols=54  Identities=22%  Similarity=0.328  Sum_probs=42.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCC-eEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGA-AIGI  131 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~-~l~~  131 (479)
                      ++|+. .+++|+.|++||.+..++-. .++++--|.+   .++.+++||.|..|+ +|+.
T Consensus       150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~  204 (206)
T PRK05305        150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR  204 (206)
T ss_pred             cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence            45555 46899999999999999976 6677777766   278899999999998 4444

>PRK09294 acyltransferase PapA5; Provisional

Probab=84.00  E-value=25  Score=36.85  Aligned_cols=39  Identities=18%  Similarity=0.100  Sum_probs=28.5

Q ss_pred             EEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhC
Q 011684          285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQH  323 (479)
Q Consensus       285 ~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~  323 (479)
                      ....+|-....++++..++.|+|++.+++-|++.++.+.
T Consensus       209 ~~~~l~~~~~~~L~~~a~~~~~t~~~~l~Aa~~~~l~r~  247 (416)
T PRK09294        209 TRCRLSKAQTSSLAAFGRRHRLTVNALVSAAILLAEWQL  247 (416)
T ss_pred             eEEEeCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            345677555555566666679999999999998887654

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=83.88  E-value=1.5  Score=48.65  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.9

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ..|.||..|.|.++++++||.|..|++|+.++...-
T Consensus       518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKm  553 (582)
T TIGR01108       518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKM  553 (582)
T ss_pred             CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence            479999999999999999999999999999986553

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=83.29  E-value=3.3  Score=46.05  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.||..|+|.++.+++|+.|..|++|+.++...
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK  557 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK  557 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            467999999999999999999999999999997543

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=82.64  E-value=2.5  Score=38.63  Aligned_cols=18  Identities=22%  Similarity=0.394  Sum_probs=16.8

Q ss_pred             ecCCCCeecCCCeEEEEe
Q 011684          116 VVPEGESAPVGAAIGILA  133 (479)
Q Consensus       116 ~~~~g~~v~~G~~l~~i~  133 (479)
                      ++++||.|..||+|.++.
T Consensus        92 ~v~~Gd~Vk~Gd~Li~fD  109 (156)
T COG2190          92 LVKEGDKVKAGDPLLEFD  109 (156)
T ss_pred             EeeCCCEEccCCEEEEEC
Confidence            889999999999999984

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=82.50  E-value=2.3  Score=43.37  Aligned_cols=29  Identities=24%  Similarity=0.441  Sum_probs=26.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDK   99 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K   99 (479)
                      ..|+|.++++++||.|..|++|+.|+.++
T Consensus        52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         52 AAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            45999999999999999999999998654

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=81.78  E-value=2.8  Score=43.43  Aligned_cols=39  Identities=8%  Similarity=0.115  Sum_probs=34.2

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhhH
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEV  139 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~~  139 (479)
                      .+.|-+..+|+|.++.+++++.|..|++|+.|++..-..
T Consensus        53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y~~   91 (352)
T COG1566          53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRDYRA   91 (352)
T ss_pred             EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHHHHH
Confidence            356889999999999999999999999999998766443

>PRK12784 hypothetical protein; Provisional

Probab=80.86  E-value=1.7  Score=34.64  Aligned_cols=41  Identities=20%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             cceeeE-EEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684           98 DKADMD-VETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (479)
Q Consensus        98 ~K~~~~-v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~  138 (479)
                      ||..+| |.||+-|+|.++++.+++.|-.=++|+.|...+..
T Consensus         1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~   42 (84)
T PRK12784          1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGE   42 (84)
T ss_pred             CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCc
Confidence            344444 99999999999999999999999999999865543

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=80.06  E-value=1.5  Score=38.54  Aligned_cols=27  Identities=15%  Similarity=0.278  Sum_probs=23.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      +|+--++++++||+|++||+|+++-.+
T Consensus        78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~  104 (124)
T cd00210          78 NGEGFTSHVEEGQRVKQGDKLLEFDLP  104 (124)
T ss_pred             CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence            477889999999999999999988643

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=80.02  E-value=4.6  Score=31.32  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=26.9

Q ss_pred             eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEE
Q 011684           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVV   95 (479)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~v   95 (479)
                      ...+|.-|      ..|+|++|+++.|+.|..|+.|+.|
T Consensus        41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence            34455555      3499999999999999999999875

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	479
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		3e-23
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		2e-18
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		7e-16
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		4e-14
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		2e-12
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		3e-12
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		2e-11
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		7e-11
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		1e-08
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		2e-08
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		4e-08
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		8e-08
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		1e-07
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		2e-07
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		2e-05
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		6e-05
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		9e-05
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		1e-04
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		1e-04
1ghj_A	79	Solution Structure Of The Lipoyl Domain Of The 2- O		3e-04
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		9e-04

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Query: 352 GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411
            GLITP++ +A    +  ++     L  KAR  +LQPHE+  GTFT+SNLGMFG+  F A
Sbjct: 111 AGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSA 170
Query: 412 ILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKI 470
           I+ P Q  I+A+GAS+  +V AD +  F V S M V ++ DHR++ GA  A +L  F K 
Sbjct: 171 IINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKY 230
Query: 471 VENPESLTL 479
           +E P ++ L
Sbjct: 231 LEKPITMLL 239

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 171/431 (39%), Gaps = 19/431 (4%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   + EG+IV W    GD +++ + +  V++DKA +++ +   G +  I+VPE
Sbjct: 4   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 120 GESAPVGAAIGILXXXXXXXXXXXXXXXXXXXXXXXSHXXXXXXXXXXXXXXXXXXXESA 179
           G  A VG  +  +                                              A
Sbjct: 64  GTVATVGQTL--ITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121
Query: 180 PSGP-RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXXXXXXX 238
            +GP R+ +A P  +K  ++  VDI  V GTG  GR+  ED++                 
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID---AFLAGGAKPAPAAA 178
Query: 239 XXXXXXXXXXXXXXXXXXGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
                               T    + ++ A++K M+ S  + P   +        L A 
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAH 238
Query: 298 YEKVK----PKGVTMTXX--XXXXXXXXXVQHPVVNASCKD-GKSFTYXXXXXXXXXXXX 350
            +K K     KG+ +T              ++PV+N S  D  +                
Sbjct: 239 RKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADT 298
Query: 351 XGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             GL+ PV++ AD+  ++ L+Q+  EL EKAR  +L P E    + T++N+G  G   F 
Sbjct: 299 DRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFT 358
Query: 411 AILPPGQGAIMAVG--ASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFS 468
            ++   + AI+ +G  A KP V    DG       + ++++ DHR+I GA     L    
Sbjct: 359 PVINHPEVAILGIGRIAEKPIV---RDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIK 415
Query: 469 KIVENPESLTL 479
           +++ +PE L +
Sbjct: 416 RLLSDPELLLM 426

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 322 QHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELVEKA 381
           ++P VNAS  DG    Y              GL+TPVL+D D L +  + +K KEL  K 
Sbjct: 76  RYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKG 134
Query: 382 RSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVK 441
           R  +L   +   G FT++N G+FG      I+ P Q AI+ + A K   +A  +G   + 
Sbjct: 135 RDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMA-VNGQVEIL 193
Query: 442 SKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
             M + ++ DHR+I G +   FL T  +++E+P  L L
Sbjct: 194 PMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
           GL+ PV+ DA   +   L+ +  EL+  AR   L P E    TFT+SN G  GVD    +
Sbjct: 115 GLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPV 174
Query: 413 LPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472
           +   + AI+ +GA KP  V    G    +  M +    DHR++ GA +A F+     ++E
Sbjct: 175 INHPEAAILGLGAIKPRPVV-VGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIE 233
Query: 473 NPESLTL 479
           +PE+  L
Sbjct: 234 SPETALL 240

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 7/225 (3%)
Query: 262 PFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP----KGVTMTXX--XXXX 315
           P      A+ K M  +L +P F     +    L  L E++KP    +G+ ++        
Sbjct: 35  PVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKA 94
Query: 316 XXXXXVQHPVVNASC-KDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKW 374
                +Q P++NAS  ++ ++ TY              GLI P +++     ++ ++ + 
Sbjct: 95  ASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATEL 154
Query: 375 KELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADA 434
             L +   + QL  ++   GTFTLSN+G  G      ++ P + AI A+G  K     + 
Sbjct: 155 NRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNE 214
Query: 435 DGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
            G       M V+ +ADHRII GA ++ F   +   +ENP  + L
Sbjct: 215 KGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL 259

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 6/161 (3%)
Query: 322 QHPVVNASCKD-GKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELVEK 380
           ++PV+N S  D  +                  GL+ PV++ AD+  ++ L+Q+  EL EK
Sbjct: 85  EYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEK 144
Query: 381 ARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVG--ASKPTVVADADGFF 438
           AR  +L P E    + T++N+G  G   F  ++   + AI+ +G  A KP V    DG  
Sbjct: 145 ARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV---RDGEI 201
Query: 439 GVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
                + ++++ DHR+I GA     L    +++ +PE L +
Sbjct: 202 VAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 61  IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120
           I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV EG
Sbjct: 10  ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69
Query: 121 -ESAPVGAAIGIL 132
            ++  +G+ IG++
Sbjct: 70  SKNIRLGSLIGLI 82

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 29  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88
Query: 120 G-ESAPVGAAIGIL 132
           G    P+G  + I+
Sbjct: 89  GTRDVPLGTPLCII 102

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 11  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 70
Query: 120 G-ESAPVGAAIGIL 132
           G    P+G  + I+
Sbjct: 71  GTRDVPLGTPLCII 84

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 354 LITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAIL 413
           L  PV+++AD+  +  ++++  EL  KAR+ +L   +   GTFT+++ G FG  +   I+
Sbjct: 121 LYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGII 180
Query: 414 PPGQGAIMAVGA--SKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIV 471
              Q AI+ V +   +P ++   D    V+  + + ++ DHRI+ G     FLQ     V
Sbjct: 181 NHPQAAILQVESIVKRPVII---DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANV 237
Query: 472 E 472
           E
Sbjct: 238 E 238

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+D A +  E   +G LA I+VPE
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66
Query: 120 G-ESAPVGAAIGIL 132
           G    P+G  + I+
Sbjct: 67  GTRDVPLGTPLCII 80

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +++ +P+LS TM  G I  W K EGD +++G+ +  VE+DKA +  E+  +  +A I+V 
Sbjct: 8   QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 119 EG-ESAPVGAAIGI 131
           EG    P+GA I I
Sbjct: 68  EGTRDVPIGAIICI 81

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 10/179 (5%)
Query: 300 KVKPKGVTMTXXXXXXXXXXXVQHPVVNASCKDGKS-FTYXXXXXXXXXXXXXGGLITPV 358
           K + + VT+T            Q+P +NA   + +  +                GL   V
Sbjct: 51  KARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFV 110
Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
           ++DAD+  +  +S +  +   +AR  +LQ  E    TFT++N+G  G      I+   + 
Sbjct: 111 IKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEV 170
Query: 419 AIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESL 477
           AI+ V       + + +G    +  M ++++ DHR+I GA    F+    K++E+P ++
Sbjct: 171 AILGVHR-----ILEREG----RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAI 220

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGA-------- 425
           ++++V +AR  +L   +++  T +L+N G  G       L  GQGAI+  GA        
Sbjct: 117 YEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQ 176
Query: 426 -SKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIV 471
            +    +AD     G+   + +  T DHRII GA+   FL+T  +++
Sbjct: 177 GASEERIAD----LGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLL 219

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
           GL+ PV+++ D+  L  L+ +  EL EKARSK+L         FT+S+LG  G   F  I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472
           +   + AI+ V  +    V D    F  +  + ++++ DHR+I GA  A F +    ++ 
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLA 236
Query: 473 NPESLTL 479
           +  ++ L
Sbjct: 237 DIRAILL 243

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
           GL+ PV+++ D+  L  L+ +  EL EKARSK+L         FT+S+LG  G   F  I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472
           +   + AI+ V  +    V D    F  +  + ++++ DHR+I GA  A F +    ++ 
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVIDGAAAARFTKRLGDLLA 236
Query: 473 NPESLTL 479
           +  ++ L
Sbjct: 237 DIRAILL 243

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   +TEG+IV W   EGD++ K + +V V +DK  + + +   G +  I+  E
Sbjct: 3   EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 120 GESAPVGAAI 129
           G+  PVG+ +
Sbjct: 63  GQVVPVGSTL 72

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
           GL+ PV+++ D+  L  L+ +  EL EKARSK+L         FT+++LG  G   F  I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472
           +   + AI+ V  +    V D    F  +  + ++++ DHR+I GA  A F +    ++ 
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLA 236
Query: 473 NPESLTL 479
           +  ++ L
Sbjct: 237 DIRAILL 243

>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I  P    ++ +G + +W K  G+ + + E +V +E+DK  M+V    DG++A IV  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 120 GESAPVGAAIGIL 132
           G++   G  +G L
Sbjct: 63  GDTVLSGELLGKL 75

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
           GL+ PV+++ D+  L  L+ +  EL EKARSK+L         FT+S+LG  G   F  I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472
           +   + AI+ V  +    V D    F  +  + ++++ D R+I GA  A F +    ++ 
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLA 236
Query: 473 NPESLTL 479
           +  ++ L
Sbjct: 237 DIRAILL 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	2e-89
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	5e-71
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	9e-59
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	4e-54
2ii3_A	262	Lipoamide acyltransferase component of branched-C	3e-52
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	2e-39
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	1e-38
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	8e-36
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	5e-31
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	6e-31
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	5e-30
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	2e-29
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	5e-28
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	3e-27
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	3e-24
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	8e-21
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	5e-20
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	1e-15
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	4e-15
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	7e-14
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	1e-13
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	6e-12
2coo_A	70	Lipoamide acyltransferase component of branched- c	1e-10
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	3e-10
3rnm_E	58	Lipoamide acyltransferase component of branched-C	4e-10
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	6e-10
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	5e-09
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	1e-08
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	3e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	7e-08
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	2e-07
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	6e-06
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	1e-05
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	2e-05
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	2e-05
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	7e-05
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	7e-05
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	8e-05

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  278 bits (713), Expect = 2e-89
 Identities = 109/434 (25%), Positives = 187/434 (43%), Gaps = 25/434 (5%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   + EG+IV W    GD +++ + +  V++DKA +++ +   G +  I+VPE
Sbjct: 4   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G  A VG  +  L +                A         S      +       AE+ 
Sbjct: 64  GTVATVGQTLITL-DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAE 122

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
               R+ +A P  +K  ++  VDI  V GTG  GR+  ED++         + A +   A
Sbjct: 123 AGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKA 182

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIIT-------D 292
           A     PA           T    + ++ A++K M+ S          P +T        
Sbjct: 183 APAAAKPATTEGE---FPETREKMSGIRRAIAKAMVHSKHT------APHVTLMDEADVT 233

Query: 293 ALDALYEKVKP----KGV--TMTALLAKAAAMALVQHPVVNASC-KDGKSFTYNANINIA 345
            L A  +K K     KG+  T    + KA   AL ++PV+N S   + +        NI 
Sbjct: 234 KLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIG 293

Query: 346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG 405
           +A   + GL+ PV++ AD+  ++ L+Q+  EL EKAR  +L P E    + T++N+G  G
Sbjct: 294 IAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAG 353

Query: 406 VDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQ 465
              F  ++   + AI+ +G      +   DG       + ++++ DHR+I GA     L 
Sbjct: 354 GQWFTPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSLSFDHRMIDGATAQKALN 412

Query: 466 TFSKIVENPESLTL 479
              +++ +PE L +
Sbjct: 413 HIKRLLSDPELLLM 426

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  224 bits (573), Expect = 5e-71
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 10/242 (4%)

Query: 245 APAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDALYEKVKP 303
            P  AP        T +P + ++  +++ +++S  ++P + +   +    +  + +++  
Sbjct: 1   GPGMAPVPT--GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNK 58

Query: 304 KG-----VTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV 358
                  +++   + KA+A+A ++ P  N+S         N  ++++VAV+   GLITP+
Sbjct: 59  ILEGRSKISVNDFIIKASALACLKVPEANSSW-MDTVIRQNHVVDVSVAVSTPAGLITPI 117

Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
           + +A    +  ++     L  KAR  +LQPHE+  GTFT+SNLGMFG+  F AI+ P Q 
Sbjct: 118 VFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQA 177

Query: 419 AIMAVGASKPT-VVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESL 477
            I+A+GAS+   V AD +  F V S M V ++ DHR++ GA  A +L  F K +E P ++
Sbjct: 178 CILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITM 237

Query: 478 TL 479
            L
Sbjct: 238 LL 239

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  180 bits (460), Expect = 4e-54
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 7/239 (2%)

Query: 247 AAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDALYEKVKPKG 305
            AA    +  G  V P   + A +++ M  S   +PT +    +I   L  L ++     
Sbjct: 3   LAAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAA 62

Query: 306 V--TMTALLAKAAAMALVQHPVVNAS---CKDGKSFTYNANINIAVAVAINGGLITPVLQ 360
              T  AL  +   +AL  + ++N++     +G     +  +++    A   GL+ PV+ 
Sbjct: 63  PEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVT 122

Query: 361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI 420
           DA   +   L+ +  EL+  AR   L P E    TFT+SN G  GVD    ++   + AI
Sbjct: 123 DAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAI 182

Query: 421 MAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           + +GA KP  V    G    +  M +    DHR++ GA +A F+     ++E+PE+  L
Sbjct: 183 LGLGAIKPRPVVV-GGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALL 240

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  176 bits (448), Expect = 3e-52
 Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 8/260 (3%)

Query: 227 APSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVG 286
             ++ + P   P     P P + P   +       P      A+ K M  +L +P F   
Sbjct: 1   GHAEIMPPPPKPKDRTIPIPISKPPVFIGKD-RTEPVKGFHKAMVKTMSAALKIPHFGYC 59

Query: 287 YPIITDALDALYEKVKP----KGV--TMTALLAKAAAMALVQHPVVNASC-KDGKSFTYN 339
             +    L  L E++KP    +G+  +      KAA++ L+Q P++NAS  ++ ++ TY 
Sbjct: 60  DEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 119

Query: 340 ANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLS 399
           A+ NI +A+    GLI P +++     ++ ++ +   L +   + QL  ++   GTFTLS
Sbjct: 120 ASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLS 179

Query: 400 NLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGAD 459
           N+G  G      ++ P + AI A+G  K     +  G       M V+ +ADHRII GA 
Sbjct: 180 NIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGAT 239

Query: 460 LAAFLQTFSKIVENPESLTL 479
           ++ F   +   +ENP  + L
Sbjct: 240 VSRFSNLWKSYLENPAFMLL 259

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  142 bits (359), Expect = 2e-39
 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 26/251 (10%)

Query: 241 LPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIIT-------DA 293
           +   A    P      G   +P   ++ A++K+M  S          P            
Sbjct: 1   MSLKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQE------IPHAWMMVEVDATG 54

Query: 294 LDALYEKVKPK-----GV--TMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAV 346
           L      VK       G   T  A   KA A AL + P +N++   G     +ANINI++
Sbjct: 55  LVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTW-AGDKIIEHANINISI 113

Query: 347 AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV 406
           A+A    L  PV+++AD+  +  ++++  EL  KAR+ +L   +   GTFT+++ G FG 
Sbjct: 114 AIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173

Query: 407 DRFDAILPPGQGAIMAVGA--SKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFL 464
            +   I+   Q AI+ V +   +P ++   D    V+  + + ++ DHRI+ G     FL
Sbjct: 174 VQSMGIINHPQAAILQVESIVKRPVII---DDMIAVRDMVNLCLSIDHRILDGLLAGKFL 230

Query: 465 QTFSKIVENPE 475
           Q     VE   
Sbjct: 231 QAIKANVEKIS 241

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  139 bits (353), Expect = 1e-38
 Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 25/237 (10%)

Query: 259 TVVPFTTMQAAVSKNMIES-LSVP--------------TFRVGYPIITDALDALYEKVKP 303
             VP T +    + N+  S L+VP               FRV       A  A+ EK   
Sbjct: 16  EEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRV-------AQKAVAEKAGV 68

Query: 304 KGVTMTALLAKAAAMALVQHPVVNASC-KDGKSFTYNANINIAVAVAINGGLITPVLQDA 362
           K +T+  LL KA A  L + P  N+S    G++      ++I  AV    GL+ PV+++ 
Sbjct: 69  K-LTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNV 127

Query: 363 DKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMA 422
           D+  L  L+ +  EL EKARSK+L         FT+S+LG  G   F  I+   + AI+ 
Sbjct: 128 DQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILG 187

Query: 423 VGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           V  +    V D    F  +  + ++++ D R+I GA  A F +    ++ +  ++ L
Sbjct: 188 VSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  131 bits (332), Expect = 8e-36
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 25/229 (10%)

Query: 261 VPFTTMQAAVSKNMIESLSVPTFRVGYPIIT-------DALDALYEKVKPKGV--TMTAL 311
           +    ++  +   M ++      +   P  T        ++ ++ +  K +    T+T  
Sbjct: 9   LEMHGLRRIIFDKMTKA------KQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGF 62

Query: 312 LAKAAAMALVQHPVVNASCK-DGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370
           LA+     L Q+P +NA      + +      NI +AV    GL   V++DAD+  +  +
Sbjct: 63  LARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEI 122

Query: 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTV 430
           S +  +   +AR  +LQ  E    TFT++N+G  G      I+   + AI+ V       
Sbjct: 123 SAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILERE 182

Query: 431 VADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
                        M ++++ DHR+I GA    F+    K++E+P ++  
Sbjct: 183 GRKY---------MYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIY 222

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score =  118 bits (296), Expect = 5e-31
 Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 17/204 (8%)

Query: 277 SLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSF 336
           S++  T+     +    + A  + VK              A  +  HP    + KDG+  
Sbjct: 27  SVAQCTYNQTVQL---DITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELV 83

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR-SKQLQPHEYNSGT 395
            ++ +++    V          L      D       + + V     +    P  +    
Sbjct: 84  IWD-SVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENM 142

Query: 396 FTLSNLGMFGVDRFDAILPPGQGA---IMAVGASKPTVVADADGFFGVKSKMLVNVTADH 452
           F +S         FD  +         +  +G              G K  M + +   H
Sbjct: 143 FFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ---------GDKVLMPLAIQVHH 193

Query: 453 RIIYGADLAAFLQTFSKIVENPES 476
            +  G  +   L    +  +  + 
Sbjct: 194 AVCDGFHVGRMLNELQQYCDEWQG 217

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  115 bits (289), Expect = 6e-31
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 29  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHP 158
           G    P+G  + I+ E EA+++       +         P
Sbjct: 89  GTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVP 128

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score =  115 bits (289), Expect = 5e-30
 Identities = 25/201 (12%), Positives = 61/201 (30%), Gaps = 12/201 (5%)

Query: 277 SLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSF 336
                 F +   I    +  L + +         ++    A A+ Q   +  + KD +  
Sbjct: 22  HRLPCGFSLTSKI---DITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELI 78

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR-SKQLQPHEYN-SG 394
            ++ +++    V          L      D+      +  ++E+ +   +L P       
Sbjct: 79  VWD-SVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPEN 137

Query: 395 TFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRI 454
              +S L     D F+  +              P +        G +  + ++V   H +
Sbjct: 138 HLNISALPWVNFDSFNLNVANFTDYFA------PIITMAKYQQEGDRLLLPLSVQVHHAV 191

Query: 455 IYGADLAAFLQTFSKIVENPE 475
             G  +A F+    ++  +  
Sbjct: 192 CDGFHVARFINRLQELCNSKL 212

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  110 bits (277), Expect = 2e-29
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +P+LS TM  G I  W K EGD +++G+ +  VE+DKA +  E+  +  +A I+V E
Sbjct: 9   KVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKA-KAASAGAAAPAS 156
           G    P+GA I I      ++   K     S+ A+ P+S
Sbjct: 69  GTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSS 107

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  106 bits (266), Expect = 5e-28
 Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV E
Sbjct: 9   KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAA 147
           G ++  +G+ IG++ E   +       ++
Sbjct: 69  GSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  108 bits (272), Expect = 3e-27
 Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 313 AKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQ 372
            KA   AL ++P VNAS  DG    Y+   ++++AV+   GL+TPVL+D D L +  + +
Sbjct: 67  VKAVVEALKRYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK 125

Query: 373 KWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI--MAVGASKPTV 430
           K KEL  K R  +L   +   G FT++N G+FG      I+ P Q AI  M     +P  
Sbjct: 126 KIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMA 185

Query: 431 VADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           V   +G   +   M + ++ DHR+I G +   FL T  +++E+P  L L
Sbjct: 186 V---NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 95.5 bits (238), Expect = 3e-24
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+D A +  E   +G LA I+VPE
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66

Query: 120 G-ESAPVGAAIGILAETEAEV 139
           G    P+G  + I+ E EA++
Sbjct: 67  GTRDVPLGTPLCIIVEKEADI 87

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 89.8 bits (222), Expect = 8e-21
 Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 21/195 (10%)

Query: 290 ITDALDA--LYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA 347
           IT  ++     ++ K  G +       A   A  + P                 I++   
Sbjct: 32  ITSEVECGGARQRAKAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSP 91

Query: 348 VAINGGLITPVLQDADKLDLYLLSQKWKELVEK-------ARSKQLQPHEYNSGTFTLSN 400
           + I         +     D     Q+ + +++          ++  +  + + G   LS 
Sbjct: 92  IKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSA 151

Query: 401 LGMFGVDRFDAILPPGQGA---IMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYG 457
                            G    ++  G +              +  M + +T  H  I G
Sbjct: 152 TPDLYFTSITGTQEKRSGNNYPLLNAGKAIIR---------EGRLVMPIAMTIHHGFIDG 202

Query: 458 ADLAAFLQTFSKIVE 472
             L+ F +     ++
Sbjct: 203 HHLSLFYKKVEDFLK 217

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 92.6 bits (231), Expect = 5e-20
 Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 46/236 (19%)

Query: 274 MIESLSVPT---FRVGYP---------IITDALDALYEKVKPKGVTMTALLAKAAAMALV 321
           M  SL VPT    R   P         +I + L    ++ +   ++ T LL  A   A+ 
Sbjct: 2   MNASLEVPTATSVR-AIPAKLMIDNRVVINNHL----KRTRGGKISFTHLLGYAIVQAVK 56

Query: 322 QHPVVNAS--CKDGK-SFTYNANINIAVAVAINGG-----LITPVLQDADKLDLYLLSQK 373
           + P +N      DGK +    A+ N+ +A+ + G      L+   ++  + +        
Sbjct: 57  KFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAA 116

Query: 374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFG----VDRFDAILPPGQGAIMAVGA---- 425
           ++++V +AR  +L   +++  T +L+N G  G    V R    L  GQGAI+  GA    
Sbjct: 117 YEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPR----LMQGQGAIIGAGAMEYP 172

Query: 426 -----SKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPES 476
                +    +AD     G+   + +  T DHRII GA+   FL+T  +++ + + 
Sbjct: 173 AEFQGASEERIAD----LGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDF 224

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 18/89 (20%), Positives = 41/89 (46%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
            ++ +  +  +   + E  +  W   EGD +S+ +S+  V+SDKA + + + YDG++  +
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 116 VVPEGESAPVGAAIGILAETEAEVAQAKA 144
                + A VG  +  +     +  +   
Sbjct: 62  YYNLDDIAYVGKPLVDIETEALKDLEHHH 90

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 69.2 bits (170), Expect = 4e-15
 Identities = 23/72 (31%), Positives = 41/72 (56%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           + E  +P +   +TEG+IV W   EGD++ K + +V V +DK  + + +   G +  I+ 
Sbjct: 1   MYEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILY 60

Query: 118 PEGESAPVGAAI 129
            EG+  PVG+ +
Sbjct: 61  REGQVVPVGSTL 72

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 65.7 bits (161), Expect = 7e-14
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I  P    ++ +G + +W K  G+ + + E +V +E+DK  M+V    DG++A IV  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62

Query: 120 GESAPVGAAIGILAE 134
           G++   G  +G L E
Sbjct: 63  GDTVLSGELLGKLTE 77

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I +P L  ++ +  + +W K  GD + + E +V +E+DK  ++V    DGIL A++  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63

Query: 120 GESAPVGAAIGILAE 134
           G +      +G L E
Sbjct: 64  GTTVTSRQILGRLRE 78

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 182 GPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAAL 241
           G R+  A P A++L K+  +D++ V GTGP G IT EDV++          A   A A  
Sbjct: 1   GSREVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRY---------AEETAKATA 51

Query: 242 PKPAPAAAPAA 252
           P PAP A   A
Sbjct: 52  PAPAPKAVEKA 62

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 176 AESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPS 235
           +       RKT+ATP  ++L  ++ + ++ VVG+G  GRI  ED+           + PS
Sbjct: 6   SGHQEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPS 65

Query: 236 AAPAA 240
              + 
Sbjct: 66  GPSSG 70

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Length = 40

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226
           A P  ++L ++  VD+  + GTG  GRIT EDV +AAG+
Sbjct: 2   AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAGL 40

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
                RKT+ATP  + L  ++ + ++ VVG+G  GRI  ED+  
Sbjct: 1   GEIKGRKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILN 44

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           +A P A++L+++  V    V GTG  GRI  EDV + 
Sbjct: 1   LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRH 37

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 178 SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           ++         +P  ++LL +H +D +++ GTG  GR+T EDVEK 
Sbjct: 2   ASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKH 47

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Length = 41

 Score = 49.4 bits (119), Expect = 1e-08
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA 224
           +A P A+KL ++  + I  V G+GP GR+  EDV   A
Sbjct: 2   LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
           R+ +A P  +K  ++  VDI  V GTG  GR+  ED++ 
Sbjct: 5   RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDA 43

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 3/79 (3%)

Query: 66  LSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPV 125
           L S    GK+  +   +G  +  G S   +E  K  M +     G +   +   G     
Sbjct: 8   LRSPSA-GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEA 65

Query: 126 GAAIGILAETE-AEVAQAK 143
           G  +  L   +        
Sbjct: 66  GCVVARLELDDLEHHHHHH 84

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query: 73  GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132
            ++   +   GD ++  +S++ VE DKA M+V   + G++  + V  G+    G+ I I 
Sbjct: 11  VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 70

Query: 133 AETEAEVAQAKAK 145
               A  A A AK
Sbjct: 71  EVEGAAPAAAPAK 83

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 66  LSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPV 125
           L S    GK+  +   +G  +  G S   +E  K  M +     G +   +   G     
Sbjct: 20  LRSPSA-GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEA 77

Query: 126 GAAIGILA 133
           G  +  L 
Sbjct: 78  GCVVARLE 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 50/196 (25%)

Query: 295 DALYEKVKP-KGVT---M-----TALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIA 345
            AL E ++P K V    +     T +    A    + + V      D K F +   +N+ 
Sbjct: 142 QALLE-LRPAKNVLIDGVLGSGKTWV----ALDVCLSYKVQ--CKMDFKIF-W---LNL- 189

Query: 346 VAVAINGGLITP--VLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGM 403
                     +P  VL+   KL LY +   W    + + +        +S    L  L +
Sbjct: 190 ------KNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN---IKLRIHSIQAELRRL-L 238

Query: 404 FGVDRFDAILPPGQGAIMA-VGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAA 462
                 + +L      ++  V  +K     +A   F +  K+L+  T   ++     L+A
Sbjct: 239 KSKPYENCLL------VLLNVQNAK---AWNA---FNLSCKILL-TTRFKQVT--DFLSA 283

Query: 463 FLQTFSKIVENPESLT 478
              T   +  +  +LT
Sbjct: 284 ATTTHISLDHHSMTLT 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 37/145 (25%)

Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQP----HEYNSGTFTLSN----LGMFGVDRFD 410
           +++  +++ Y    K+  L+   +++Q QP      Y      L N       + V R  
Sbjct: 83  VEEVLRIN-Y----KF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 411 AI---------LPPGQGAI---MAVGASKPTVVADADGFFGVKSKML-----VNVTADHR 453
                      L P +  +   +  G+ K  V  D    + V+ KM      +N+   + 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 454 IIYGADLAAFLQTF-SKIVENPESL 477
                 +   LQ    +I  N  S 
Sbjct: 195 P---ETVLEMLQKLLYQIDPNWTSR 216

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVA 233
             G  +   +P A+ +L++H +D +    TGP G  T ED  K   +  +  + 
Sbjct: 4   IPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKIL 57

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 81  SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137
             GD++   + +VV+ES KA M+V +   G++ ++ V  G+    G AI  L     
Sbjct: 21  KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 81  SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138
             GD ++  +S++ VE DKA M+V   + G++  + V  G+    G+ I I  E E  
Sbjct: 23  KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF-EVEGA 79

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 81  SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138
           + GD ++  ++++ +E+DKA MDV     G++  + V  G+    G  I ++ E E  
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV-EAEGT 80

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
              + MT G I       GD +  G+S++V+ + K +  +++  DG +  +   EG  A 
Sbjct: 16  GPLAPMT-GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQAN 74

Query: 125 VGAAIGILAETEAEVAQAKAKAASA 149
               +    E E++  ++++  +S 
Sbjct: 75  RHTPLVEFEEEESDKRESESGPSSG 99

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 73  GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132
           G +       GD + KG+ V ++ES K ++ +     GI+  +   EG+    G  +  L
Sbjct: 8   GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67

Query: 133 AETE 136
           + + 
Sbjct: 68  SNST 71

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 62   FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE 121
                L S  T G+    + + GD +  G+ V+++E+ K +M V     G +  I+   G+
Sbjct: 1166 DAELLYSEYT-GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD 1224

Query: 122  SAPVGAAIGIL 132
                G  + ++
Sbjct: 1225 MVEAGDLVAVI 1235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	100.0
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.97
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.8
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.79
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.78
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.77
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.76
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.72
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.67
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.67
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.66
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.64
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.61
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.44
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.43
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.41
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.39
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.36
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.31
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.3
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.29
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.25
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.24
3rnm_E	58	Lipoamide acyltransferase component of branched-C	99.23
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.22
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	99.2
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.2
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.16
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.16
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	99.13
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.12
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	99.12
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	99.03
2coo_A	70	Lipoamide acyltransferase component of branched- c	99.01
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	99.0
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.9
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.88
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.86
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.81
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.48
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.45
1hpc_A	131	H protein of the glycine cleavage system; transit	98.44
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.01
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.99
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.98
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.92
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.9
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.74
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.7
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.7
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.43
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.18
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.73
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.72
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	96.57
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	96.52
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.13
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.04
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.01
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.74
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	95.67
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	95.39
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	95.29
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	95.11
2qj8_A	332	MLR6093 protein; structural genomics, joint center	94.99
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	94.65
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	94.32
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	94.26
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	94.21
2xha_A	193	NUSG, transcription antitermination protein NUSG;	93.64
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	93.54
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	93.5
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	93.32
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	93.0
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	92.84
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	92.43
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	92.17
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	91.98
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	91.86
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	91.84
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	91.75
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	91.75
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	91.64
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	91.46
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	91.45
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	90.62
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	90.42
4hvm_A	493	Tlmii; PSI-biology, midwest center for structural	90.38
2xha_A	193	NUSG, transcription antitermination protein NUSG;	89.57
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	88.21
3our_B	183	EIIA, phosphotransferase system IIA component; exh	87.13
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	86.91
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	86.27
3fot_A	519	15-O-acetyltransferase; fusarium head blight, tric	86.1
1l5a_A	436	Amide synthase, VIBH; nonribosomal peptide synthet	85.98
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	85.95
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	81.33
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	81.31
1l5a_A	436	Amide synthase, VIBH; nonribosomal peptide synthet	80.74
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	80.48

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=4e-91  Score=729.41  Aligned_cols=415  Identities=26%  Similarity=0.376  Sum_probs=40.1

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      .++|+||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|+.|+++++
T Consensus         2 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~   81 (428)
T 3dva_I            2 AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY   81 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999987654


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCcc
Q 011684          138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKK--VAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI  215 (479)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI  215 (479)
                      +...............+.+.   ..+...+.+.+.+.  ........+.++++||+|||||+|+||||++|+|||++|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI  158 (428)
T 3dva_I           82 ENMTFKGQEQEEAKKEEKTE---TVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRV  158 (428)
T ss_dssp             -------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCC
T ss_pred             cccccccccccccccCCCcc---cCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCce
Confidence            43211100000000000000   00000000000000  00001112346799999999999999999999999999999


Q ss_pred             chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHH
Q 011684          216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDAL  294 (479)
Q Consensus       216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l  294 (479)
                      +++||++|+......... .+ +.+. ...+............+++|+++|||+||++|.+| +++|||+++.+||+|+|
T Consensus       159 ~k~DV~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l  235 (428)
T 3dva_I          159 LKEDIDAFLAGGAKPAPA-AA-EEKA-APAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKL  235 (428)
T ss_dssp             CTTTTTTTSCC---------------------------------------------------------------------
T ss_pred             eHHHHHHHhhcccccccc-cc-cccc-ccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHH
Confidence            999999997643211000 00 0000 00000000000111356899999999999999999 79999999999999999


Q ss_pred             HHHHHHhCC------CCCCHHHHHHHHHHHHHhhCccccccccCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCH
Q 011684          295 DALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDL  367 (479)
Q Consensus       295 ~~~~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl  367 (479)
                      +++|+++|+      .++||++||+||+++||++||+||++|+++ ++|++|+++|+|+||++++||++|+|+++++++|
T Consensus       236 ~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl  315 (428)
T 3dva_I          236 VAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPI  315 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCH
Confidence            999999874      269999999999999999999999999652 6899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEE
Q 011684          368 YLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVN  447 (479)
Q Consensus       368 ~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~ls  447 (479)
                      .+|+++++++.+++|+|+|.++|+++|||+|||+||||+++|+||+|+||++||++|+++++|+++ ||++++|++|+|+
T Consensus       316 ~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~-~g~i~~r~~m~ls  394 (428)
T 3dva_I          316 FALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALS  394 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEE-CCEEEEeeeEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999995 8999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          448 VTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       448 lt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |+||||+|||+|+++||++|+++||+|+.||+
T Consensus       395 ls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll  426 (428)
T 3dva_I          395 LSFDHRMIDGATAQKALNHIKRLLSDPELLLM  426 (428)
T ss_dssp             --------------------------------
T ss_pred             EEecccccchHHHHHHHHHHHHHHhCHHHHhh
Confidence            99999999999999999999999999998875

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=1.5e-57  Score=443.44  Aligned_cols=216  Identities=27%  Similarity=0.432  Sum_probs=209.0

Q ss_pred             ccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhhCccccccccCC---Ce
Q 011684          262 PFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDG---KS  335 (479)
Q Consensus       262 p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~~--~~s~~~~likAva~Al~~~P~~n~~~~~~---~~  335 (479)
                      |+++|||+||++|.+| +++|||+++.+||+|+|+++|+++|+.  ++||+++++||+++||++||+||++|+++   ++
T Consensus        18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~   97 (250)
T 3l60_A           18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQ   97 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSCE
T ss_pred             CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCCe
Confidence            9999999999999999 699999999999999999999999865  78999999999999999999999999753   59


Q ss_pred             eEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCC
Q 011684          336 FTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPP  415 (479)
Q Consensus       336 i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~  415 (479)
                      |++|+++|+|+||++++||++|||++++++++.+|+++++++.+++|+|+|.++|+++|||+|||+||||++.|+||+|+
T Consensus        98 i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIinp  177 (250)
T 3l60_A           98 VHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINH  177 (250)
T ss_dssp             EEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCCT
T ss_pred             EEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684          416 GQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT  478 (479)
Q Consensus       416 ~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll  478 (479)
                      ||++||++|+++++|+++ +|+++++++|+|+|+||||+|||+++|+||++|+++||+|+.|+
T Consensus       178 pq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~  239 (250)
T 3l60_A          178 PEAAILGLGAIKPRPVVV-GGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETAL  239 (250)
T ss_dssp             TCSEEEEECCCEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHT
T ss_pred             CCceEEEecceEEEeEEE-CCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHh
Confidence            999999999999999986 78999999999999999999999999999999999999998775

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=1.1e-57  Score=447.84  Aligned_cols=222  Identities=29%  Similarity=0.433  Sum_probs=212.8

Q ss_pred             CCceeccchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCccccccc
Q 011684          257 GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC  330 (479)
Q Consensus       257 ~~~~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~  330 (479)
                      .++++|+++|||+|+++|.+|+++|||+++.+||+|+|+++|+++|+      .++||+++++||+++||++||+||++|
T Consensus        30 ~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~  109 (262)
T 2ii3_A           30 KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASV  109 (262)
T ss_dssp             CCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEE
T ss_pred             CcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEE
Confidence            46789999999999999999988999999999999999999998764      489999999999999999999999999


Q ss_pred             cCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccce
Q 011684          331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (479)
Q Consensus       331 ~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~f  409 (479)
                      +++ +++++|+++|+|+||++++||++|||+++++++|.+|+++++++.+++|+|+|.++|+++|||+|||+||+|++.|
T Consensus       110 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~  189 (262)
T 2ii3_A          110 DENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYA  189 (262)
T ss_dssp             CTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCE
T ss_pred             eCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccce
Confidence            754 5899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT  478 (479)
Q Consensus       410 tpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll  478 (479)
                      +||+|+||+|||++|+++++|++++||+++++.+|+|+|+||||+|||+|+|+||++|+++||+|+.|+
T Consensus       190 tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll  258 (262)
T 2ii3_A          190 KPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFML  258 (262)
T ss_dssp             ECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHH
T ss_pred             ECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHH
Confidence            999999999999999999999997678999999999999999999999999999999999999999775

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=2.2e-57  Score=441.66  Aligned_cols=221  Identities=28%  Similarity=0.368  Sum_probs=212.4

Q ss_pred             CceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCccccccc
Q 011684          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC  330 (479)
Q Consensus       258 ~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~  330 (479)
                      .+++|++++||.|+++|.+| +++|||+++.++|+|+|+++|+++|+      .++||+++++||+++||++||+||++|
T Consensus        15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~   94 (243)
T 1dpb_A           15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSL   94 (243)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEE
T ss_pred             ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEEE
Confidence            46789999999999999999 79999999999999999999988765      589999999999999999999999999


Q ss_pred             cCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccce
Q 011684          331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (479)
Q Consensus       331 ~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~f  409 (479)
                      +++ +++++|+++|+|+||++++||++|||++++++++.+|+++++++.+++|+|+|.++|+++|||+|||+||+|++.|
T Consensus        95 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~~  174 (243)
T 1dpb_A           95 APSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAF  174 (243)
T ss_dssp             CTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCC
T ss_pred             ecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccce
Confidence            753 6899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       410 tpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +||+|+||+|||++|+++++|+++ ||+++++++|+|+|+||||+|||+|+|+||++|+++||+|+.|++
T Consensus       175 tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  243 (243)
T 1dpb_A          175 TPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             CCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             ECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999996 789999999999999999999999999999999999999998875

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=7.7e-58  Score=442.27  Aligned_cols=219  Identities=29%  Similarity=0.443  Sum_probs=210.4

Q ss_pred             CceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCcccccc
Q 011684          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNAS  329 (479)
Q Consensus       258 ~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~  329 (479)
                      .+++|++++||+||++|.+| +++|||+++.++|+|+|+++|+++|+       .++||+++++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            35689999999999999999 78999999999999999999988764       48999999999999999999999999


Q ss_pred             ccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccce
Q 011684          330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (479)
Q Consensus       330 ~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~f  409 (479)
                      |+ ++++++|+++|+|+||++++||++|||++++++++.+|+++++++.+++|+|+|.++|+++|||+|||+||+|++.|
T Consensus        84 ~~-~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~  162 (233)
T 1scz_A           84 ID-GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS  162 (233)
T ss_dssp             EE-TTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred             Ee-CCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccce
Confidence            97 56999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT  478 (479)
Q Consensus       410 tpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll  478 (479)
                      +||+||||+|||++|+++++|+++ ||+++++++|+|+|+||||+|||+|+|+||+.|+++||+|+.|+
T Consensus       163 tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll  230 (233)
T 1scz_A          163 TPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLL  230 (233)
T ss_dssp             CCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             EcccCCCCcEEEEccccEEEEEEE-CCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHh
Confidence            999999999999999999999996 78999999999999999999999999999999999999999775

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-57  Score=444.32  Aligned_cols=221  Identities=29%  Similarity=0.380  Sum_probs=211.9

Q ss_pred             CCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCcccc
Q 011684          256 PGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVN  327 (479)
Q Consensus       256 ~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n  327 (479)
                      .+.+++|++++||+||++|.+| +++|||+++.+||+|+|+++|+++|+       .++||+++++||+++||++||+||
T Consensus        16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N   95 (256)
T 3mae_A           16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN   95 (256)
T ss_dssp             CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred             CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence            3467899999999999999999 69999999999999999999998773       479999999999999999999999


Q ss_pred             ccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCcc
Q 011684          328 ASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVD  407 (479)
Q Consensus       328 ~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~  407 (479)
                      ++|+ ++++++|+++|+|+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||+|||+||||++
T Consensus        96 a~~~-~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~  174 (256)
T 3mae_A           96 STWA-GDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSV  174 (256)
T ss_dssp             EEEE-TTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCS
T ss_pred             hEEe-cCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCcc
Confidence            9996 469999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684          408 RFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT  478 (479)
Q Consensus       408 ~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll  478 (479)
                      .|+||+|+||++||++|+++++|+++ +|+++++++|+|+|+||||+|||+++|+||++|+++||+|+.|.
T Consensus       175 ~ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~  244 (256)
T 3mae_A          175 QSMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKEN  244 (256)
T ss_dssp             EEECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTT
T ss_pred             ceEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHH
Confidence            99999999999999999999999996 78999999999999999999999999999999999999998764

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-57  Score=441.73  Aligned_cols=221  Identities=31%  Similarity=0.539  Sum_probs=211.8

Q ss_pred             CceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhhCcccccccc
Q 011684          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-----KGVTMTALLAKAAAMALVQHPVVNASCK  331 (479)
Q Consensus       258 ~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-----~~~s~~~~likAva~Al~~~P~~n~~~~  331 (479)
                      ++++|++++||+||++|.+| +++|||+++.++|+|+|+++|+++|+     .++||+++++||+++||++||+||++|+
T Consensus        12 ~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~~   91 (239)
T 3b8k_A           12 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSWM   91 (239)
T ss_dssp             CCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTSC
T ss_pred             ceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEEE
Confidence            56789999999999999999 89999999999999999999998765     4899999999999999999999999996


Q ss_pred             CCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceee
Q 011684          332 DGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA  411 (479)
Q Consensus       332 ~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftp  411 (479)
                       ++++++|+++|+|+||++++||++|+|+++++++|.+|+++++++.+++|+|+|.++|+++|||+|||+||+|++.|+|
T Consensus        92 -~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ftp  170 (239)
T 3b8k_A           92 -DTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSA  170 (239)
T ss_dssp             -CCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCCC
T ss_pred             -CCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEEC
Confidence             5689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEeCcceEEEEEc-CCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          412 ILPPGQGAIMAVGASKPTVVAD-ADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       412 ii~~~~~ail~vG~~~~~~v~~-~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |+|+||++||++|+++++|+++ +||+++++.+|+|+|+||||+|||+|+|+||++|+++||+|+.|++
T Consensus       171 iin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  239 (239)
T 3b8k_A          171 IINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL  239 (239)
T ss_dssp             CCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred             cCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence            9999999999999999999984 4788999999999999999999999999999999999999998875

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=6.6e-56  Score=426.35  Aligned_cols=213  Identities=24%  Similarity=0.378  Sum_probs=203.7

Q ss_pred             CceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhhCccccccccCC-
Q 011684          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDG-  333 (479)
Q Consensus       258 ~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~~--~~s~~~~likAva~Al~~~P~~n~~~~~~-  333 (479)
                      .+++|++++||+||++|.+| +++|||+++.++|+|+|+++|+++|++  ++||+++++||+++||++||+||++|+++ 
T Consensus         6 ~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~~   85 (224)
T 3rqc_A            6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETR   85 (224)
T ss_dssp             CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHSGGGSBBCCSST
T ss_pred             ceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhheEEeCCC
Confidence            56899999999999999999 899999999999999999999999874  78999999999999999999999999643 


Q ss_pred             CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecC
Q 011684          334 KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAIL  413 (479)
Q Consensus       334 ~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii  413 (479)
                      +++++|+++|+|+||++++||++|||++++++++.+|+++++++.+++|+|+|.++|+++|||+|||+||+|++.|+||+
T Consensus        86 ~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpii  165 (224)
T 3rqc_A           86 RVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPII  165 (224)
T ss_dssp             TCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECCC
T ss_pred             CEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEecc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          414 PPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       414 ~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |+||++||++|+++++++         +++|+|+|+||||+|||+|+|+||++|+++||+|+.|++
T Consensus       166 n~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~  222 (224)
T 3rqc_A          166 NYPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIY  222 (224)
T ss_dssp             CTTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC
T ss_pred             CCCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhh
Confidence            999999999999998742         789999999999999999999999999999999998875

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=1.9e-42  Score=331.65  Aligned_cols=201  Identities=11%  Similarity=0.104  Sum_probs=176.8

Q ss_pred             eeccchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEc
Q 011684          260 VVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYN  339 (479)
Q Consensus       260 ~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~  339 (479)
                      .+.+..--|+---..-++.++|||+++.++|+|+|+++|++.   ++||+++++||+++||++||+||++|+ ++++++|
T Consensus        10 ~id~~~W~R~~~f~~f~~~~~P~~t~~~evDvt~l~~~rk~~---~ls~~~~~ikAv~~Al~~~P~~Na~~~-~~~i~~~   85 (219)
T 1q23_A           10 TVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKN---KHKFYPAFIHILARLMNAHPEFRMAMK-DGELVIW   85 (219)
T ss_dssp             ECCGGGCTTHHHHHHHTTTTCEEEEEEEEEECHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCGGGSEEEE-TTEEEEE
T ss_pred             eECcccCCCHHHHHHhcCCCCcEEEEEEEEEhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhChHhhEEEE-CCEEEEe
Confidence            344555444444444477899999999999999999999764   899999999999999999999999997 5699999


Q ss_pred             CcccEEEEE-EeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcC-CCCC-CCCCCCeEEEeecCCCCccceeecCCCC
Q 011684          340 ANINIAVAV-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQP-HEYNSGTFTLSNLGMFGVDRFDAILPPG  416 (479)
Q Consensus       340 ~~i~i~~aV-~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~-~d~~~~tftISnlg~~G~~~ftpii~~~  416 (479)
                      +++|+|+|| ++++||++||+.. +.+++.+|+++++++++++|++ +|.+ +++ ||||+|||+||+|++.+.+.++++
T Consensus        86 ~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~  163 (219)
T 1q23_A           86 DSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANM  163 (219)
T ss_dssp             SCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCC
T ss_pred             cccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCC
Confidence            999999999 9999999999885 6789999999999999999998 5965 888 999999999999888877666554


Q ss_pred             C---ceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCc
Q 011684          417 Q---GAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPE  475 (479)
Q Consensus       417 ~---~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~  475 (479)
                      .   ++||++|+++++     +|    +.+|||+|+||||+|||+|+|+||++|+++||+|.
T Consensus       164 ~~~~~pIi~~G~~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~~  216 (219)
T 1q23_A          164 DNFFAPVFTMGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ  216 (219)
T ss_dssp             TTCCSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccceeEEEecccEEEE-----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCcc
Confidence            3   599999999876     56    68999999999999999999999999999999863

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=4e-42  Score=328.12  Aligned_cols=197  Identities=12%  Similarity=0.131  Sum_probs=173.4

Q ss_pred             cchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcc
Q 011684          263 FTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANI  342 (479)
Q Consensus       263 ~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i  342 (479)
                      +..--|+---..-++.++|||+++.++|+|+|+++|++   .++||+++++||+++||++||+||++|+ ++++++|+++
T Consensus         8 ~~~W~R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~---~~ls~~~~~ikAv~~Al~~~P~~Na~~~-~~~i~~~~~v   83 (213)
T 3cla_A            8 VKNWVRREHFEFYRHRLPCGFSLTSKIDITTLKKSLDD---SAYKFYPVMIYLIAQAVNQFDELRMAIK-DDELIVWDSV   83 (213)
T ss_dssp             CTTCTTHHHHHHHHHTSCCEEEEEEEEECHHHHHHHHT---SSCCHHHHHHHHHHHHHTTCGGGSEEEE-TTEEEEESCC
T ss_pred             cccCCcHHHHHHHhCCCCceEEEEEEEEHHHHHHHHHH---hCCCHHHHHHHHHHHHHhhCHHhhEEEE-CCEEEEEecc
Confidence            33434444444456689999999999999999999865   3899999999999999999999999997 5699999999


Q ss_pred             cEEEEE-EeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcC-CCCC-CCCCCCeEEEeecCCCCccceeecCCCC---
Q 011684          343 NIAVAV-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQP-HEYNSGTFTLSNLGMFGVDRFDAILPPG---  416 (479)
Q Consensus       343 ~i~~aV-~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~-~d~~~~tftISnlg~~G~~~ftpii~~~---  416 (479)
                      |+|+|| ++++||++||+.. +.+++.+|+++++++++++|++ +|.+ +|++||||+|||+||++++.|+...+.+   
T Consensus        84 ~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~  162 (213)
T 3cla_A           84 DPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDY  162 (213)
T ss_dssp             EEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTC
T ss_pred             ceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcc
Confidence            999999 9999999999886 6789999999999999999995 9977 7899999999999999988886433333   


Q ss_pred             CceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684          417 QGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVEN  473 (479)
Q Consensus       417 ~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~  473 (479)
                      ..+|+++|+++++     +|    +.+|||+|+||||+|||+|+|+||++|+++||+
T Consensus       163 ~~PIi~~G~~~~~-----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~  210 (213)
T 3cla_A          163 FAPIITMAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS  210 (213)
T ss_dssp             CSCEEEEECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred             cccEEEeeEEEEE-----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence            2589999999876     56    689999999999999999999999999999998

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.4e-43  Score=405.56  Aligned_cols=205  Identities=23%  Similarity=0.339  Sum_probs=170.7

Q ss_pred             HhhhccCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCC---eeEEcCcc
Q 011684          273 NMIESLSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGK---SFTYNANI  342 (479)
Q Consensus       273 ~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~---~i~~~~~i  342 (479)
                      +|.+|+++|||+++.+||+|+|+++|+++|+       .++||++|++||+++||++||+||++|++++   .+++|++|
T Consensus         1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v   80 (1113)
T 2xt6_A            1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT   80 (1113)
T ss_dssp             ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred             ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence            5888989999999999999999999998764       3899999999999999999999999997432   79999999


Q ss_pred             cEEEEEEeC--CC---eEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCC
Q 011684          343 NIAVAVAIN--GG---LITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQ  417 (479)
Q Consensus       343 ~i~~aV~~~--~g---l~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~  417 (479)
                      |||+||+++  +|   |++|||+++++++|.+|+++++++++++|+|+|+++|+++|||+|||+||+|++.|+||+||||
T Consensus        81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq  160 (1113)
T 2xt6_A           81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ  160 (1113)
T ss_dssp             CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred             cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence            999999997  66   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeCcceEEEEEcCC-----CeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccc
Q 011684          418 GAIMAVGASKPTVVADAD-----GFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESL  477 (479)
Q Consensus       418 ~ail~vG~~~~~~v~~~~-----G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~l  477 (479)
                      ++||++|+++++|+++.+     |+++++++|+|+|+||||||||+++|+||++|+++||+|+.|
T Consensus       161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w  225 (1113)
T 2xt6_A          161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF  225 (1113)
T ss_dssp             SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence            999999999999888531     678899999999999999999999999999999999999755

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.5e-41  Score=320.70  Aligned_cols=197  Identities=11%  Similarity=0.107  Sum_probs=172.5

Q ss_pred             ccchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCc
Q 011684          262 PFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNAN  341 (479)
Q Consensus       262 p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~  341 (479)
                      .+..--|+---..-.+.++|||+++.++|+|+|+++|++.   ++||+++++||+++||++||+||++|++++++++|++
T Consensus         9 d~~~W~R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~~---~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~   85 (217)
T 2i9d_A            9 DIENWERKENFNFFRHFQNPQLSITSEVECGGARQRAKAA---GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDT   85 (217)
T ss_dssp             CSSSSTTHHHHHHHTTCSBCEEEEEEEEECHHHHHHHHHT---TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESC
T ss_pred             ChhhCCCHHHHHHHhCCCCceEEEEEEEEhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecc
Confidence            3444444444444566899999999999999999998764   8999999999999999999999999963568999999


Q ss_pred             ccEEEEE-EeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHc-CCCCCC------CCCCCeEEEeecCCCCccceeecC
Q 011684          342 INIAVAV-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARS-KQLQPH------EYNSGTFTLSNLGMFGVDRFDAIL  413 (479)
Q Consensus       342 i~i~~aV-~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~-~~l~~~------d~~~~tftISnlg~~G~~~ftpii  413 (479)
                      +|+|+|| ++++||++|++. ++.+++.+|+++++++++++|+ ++|.++      |+++|||+|||+||++++.|+...
T Consensus        86 i~igvAVf~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~  164 (217)
T 2i9d_A           86 IDMLSPIKIKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQ  164 (217)
T ss_dssp             CEEEEEEECSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCB
T ss_pred             cCeEEEEEecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCC
Confidence            9999999 999999999986 5778999999999999999998 599885      899999999999999988886444


Q ss_pred             CCC---CceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHh
Q 011684          414 PPG---QGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIV  471 (479)
Q Consensus       414 ~~~---~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~l  471 (479)
                      +++   ..+||++|+++++     +|    |.+|||+|+||||+|||+|+|+||+.|+++|
T Consensus       165 ~~g~~~~~PIi~~Gk~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l  216 (217)
T 2i9d_A          165 EKRSGNNYPLLNAGKAIIR-----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL  216 (217)
T ss_dssp             CSTTCCSSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCccceEEEEecceEEEE-----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence            433   2589999999876     56    7899999999999999999999999999987

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.80  E-value=2.1e-19  Score=153.06  Aligned_cols=87  Identities=34%  Similarity=0.585  Sum_probs=81.1

Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-eecCCCeEEEEec
Q 011684           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAE  134 (479)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~-~v~~G~~l~~i~~  134 (479)
                      ++.++|+||+||++|.+|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+ .|..|++|++|.+
T Consensus         5 p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~   84 (108)
T 2dne_A            5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG   84 (108)
T ss_dssp             CCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred             ccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence            356899999999999999999999999999999999999999999999999999999999999999 8999999999998


Q ss_pred             ChhhHHHH
Q 011684          135 TEAEVAQA  142 (479)
Q Consensus       135 ~~~~~~~~  142 (479)
                      .+++...+
T Consensus        85 ~~~~~~~~   92 (108)
T 2dne_A           85 KPEDIEAF   92 (108)
T ss_dssp             CHHHHHHH
T ss_pred             Cccchhhh
Confidence            77665443

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.79  E-value=7.3e-19  Score=153.65  Aligned_cols=85  Identities=39%  Similarity=0.677  Sum_probs=79.7

Q ss_pred             cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-eecCCCeEEEEe
Q 011684           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILA  133 (479)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~-~v~~G~~l~~i~  133 (479)
                      .++..+|+||+||++|.+|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+ .|.+|++|++|.
T Consensus        24 ~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~  103 (128)
T 1y8o_B           24 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV  103 (128)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             CCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence            3457899999999999999999999999999999999999999999999999999999999999998 899999999998


Q ss_pred             cChhhH
Q 011684          134 ETEAEV  139 (479)
Q Consensus       134 ~~~~~~  139 (479)
                      +.+++.
T Consensus       104 ~~~~~~  109 (128)
T 1y8o_B          104 EKEADI  109 (128)
T ss_dssp             SSGGGG
T ss_pred             cCccch
Confidence            766543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.78  E-value=8.3e-19  Score=143.53  Aligned_cols=81  Identities=40%  Similarity=0.676  Sum_probs=77.1

Q ss_pred             eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-eecCCCeEEEEecC
Q 011684           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAET  135 (479)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~-~v~~G~~l~~i~~~  135 (479)
                      +..+|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|.+.
T Consensus         4 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~   83 (87)
T 3crk_C            4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK   83 (87)
T ss_dssp             CEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred             cceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999 89999999999865


Q ss_pred             hh
Q 011684          136 EA  137 (479)
Q Consensus       136 ~~  137 (479)
                      ++
T Consensus        84 ~~   85 (87)
T 3crk_C           84 EA   85 (87)
T ss_dssp             ST
T ss_pred             cC
Confidence            43

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=7.3e-19  Score=147.11  Aligned_cols=82  Identities=44%  Similarity=0.730  Sum_probs=77.7

Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCee-cCCCeEEEEec
Q 011684           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA-PVGAAIGILAE  134 (479)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v-~~G~~l~~i~~  134 (479)
                      .+.++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|+.|..
T Consensus         5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~   84 (98)
T 2dnc_A            5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE   84 (98)
T ss_dssp             CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred             cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence            36679999999999999999999999999999999999999999999999999999999999999998 99999999986


Q ss_pred             Chh
Q 011684          135 TEA  137 (479)
Q Consensus       135 ~~~  137 (479)
                      .++
T Consensus        85 ~~~   87 (98)
T 2dnc_A           85 EGE   87 (98)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            543

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.76  E-value=1.9e-18  Score=143.15  Aligned_cols=79  Identities=23%  Similarity=0.403  Sum_probs=76.0

Q ss_pred             eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +.++|.||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~   81 (93)
T 1k8m_A            3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (93)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999999753

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.72  E-value=1.2e-17  Score=133.86  Aligned_cols=76  Identities=32%  Similarity=0.596  Sum_probs=73.8

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      ++|+||++|+++.+|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.67  E-value=1e-16  Score=127.72  Aligned_cols=75  Identities=31%  Similarity=0.546  Sum_probs=73.1

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      .+|+||++|+++..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999985

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.67  E-value=1.3e-16  Score=127.96  Aligned_cols=75  Identities=25%  Similarity=0.457  Sum_probs=72.4

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ++|.||++|++  +|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A            3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            58999999998  9999999999999999999999999999999999999999999999999999999999999764

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.66  E-value=3.6e-18  Score=137.41  Aligned_cols=76  Identities=30%  Similarity=0.577  Sum_probs=73.3

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      .+|+||++|+++.+|+|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999998864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.64  E-value=7.6e-16  Score=123.34  Aligned_cols=74  Identities=26%  Similarity=0.410  Sum_probs=70.6

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      .+|.||++|++  + +|.+|++++||.|++||+|++||+||+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            37899999996  7 99999999999999999999999999999999999999999999999999999999999754

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.61  E-value=2.7e-16  Score=126.55  Aligned_cols=77  Identities=22%  Similarity=0.394  Sum_probs=73.1

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      .++|.||++| ++..|+|.+|++++||.|++||+|++||+||+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            4579999999 6899999999999999999999999999999999999999999999999999999999999999653

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.44  E-value=6.3e-15  Score=119.75  Aligned_cols=72  Identities=25%  Similarity=0.452  Sum_probs=67.7

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ++|++|.+      |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            36788977      8999999999999999999999999999999999999999999999999999999999997643

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.43  E-value=5.2e-13  Score=104.45  Aligned_cols=63  Identities=24%  Similarity=0.354  Sum_probs=61.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      .|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|.+
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            499999999999999999999999999999999999999999999999999999999999965

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.41  E-value=1.9e-13  Score=110.75  Aligned_cols=65  Identities=20%  Similarity=0.275  Sum_probs=61.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.+++ ++|+.|..|++|+.|.+..
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~   76 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD   76 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence            3499999999999999999999999999999999999999999999 9999999999999997643

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.39  E-value=9.2e-14  Score=115.12  Aligned_cols=80  Identities=18%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             ecceeEEEecCCCCCCC----ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeE
Q 011684           54 VQSKIREIFMPALSSTM----TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAI  129 (479)
Q Consensus        54 ~~~~~~~i~~P~l~~~~----~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l  129 (479)
                      +.....+|.+|......    ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++.+++|+.|..|++|
T Consensus        11 ~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L   90 (94)
T 2jku_A           11 VDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLL   90 (94)
T ss_dssp             -------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--------------------------------
T ss_pred             ccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEE
Confidence            34456688899888764    58999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEe
Q 011684          130 GILA  133 (479)
Q Consensus       130 ~~i~  133 (479)
                      +.|+
T Consensus        91 ~~ie   94 (94)
T 2jku_A           91 VELE   94 (94)
T ss_dssp             ----
T ss_pred             EEEC
Confidence            9873

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=108.89  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      .|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|. +++++|+.|..|++|+.|.+
T Consensus        25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            399999999999999999999999999999999999999999 99999999999999999964

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.31  E-value=7.9e-12  Score=98.05  Aligned_cols=62  Identities=27%  Similarity=0.474  Sum_probs=59.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      .|+|.+|++++||.|++||+|++++++|+..+|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            39999999999999999999999999999999999999999999999999999999999873

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.30  E-value=5.2e-12  Score=101.04  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=57.7

Q ss_pred             EEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|.+       |++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus        13 G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           13 GTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             eEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            67766       59999999999999999999999999999999999999999999999999999873

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.29  E-value=7.9e-12  Score=99.04  Aligned_cols=62  Identities=23%  Similarity=0.434  Sum_probs=59.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      .|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus        16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            39999999999999999999999999999999999999999999999999999999999873

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.25  E-value=8.6e-12  Score=104.16  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=62.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++++|+.|..|++|+.|.+.+
T Consensus        22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~   86 (99)
T 2ejm_A           22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEE   86 (99)
T ss_dssp             SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence            39999999999999999999999999999999999999999999999999999999999997644

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=99.24  E-value=4.9e-12  Score=88.32  Aligned_cols=40  Identities=40%  Similarity=0.654  Sum_probs=37.4

Q ss_pred             cccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhc
Q 011684          186 TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (479)
Q Consensus       186 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  225 (479)
                      +.+||+||+||+|+||||+.|.|||++|||+++||++|+.
T Consensus         1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   40 (41)
T 2eq9_C            1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE   40 (41)
T ss_dssp             CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred             CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            3579999999999999999999999999999999999864

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=99.23  E-value=3.7e-12  Score=95.30  Aligned_cols=43  Identities=37%  Similarity=0.556  Sum_probs=39.2

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhcc
Q 011684          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (479)
Q Consensus       184 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  226 (479)
                      .++.+||+||+||+|+||||+.|+|||++|||+++||++|+..
T Consensus         6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~   48 (58)
T 3rnm_E            6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   48 (58)
T ss_dssp             --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence            4679999999999999999999999999999999999999753

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.22  E-value=1.7e-11  Score=135.24  Aligned_cols=62  Identities=23%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      -|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus       620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            49999999999999999999999999999999999999999999999999999999999883

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=99.20  E-value=6.4e-12  Score=87.25  Aligned_cols=38  Identities=39%  Similarity=0.504  Sum_probs=35.0

Q ss_pred             cChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhc
Q 011684          188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (479)
Q Consensus       188 asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  225 (479)
                      +||+||+||+|+||||+.|.|||++|||+++||++|+.
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   39 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE   39 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC--
T ss_pred             CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            69999999999999999999999999999999998753

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=99.20  E-value=9.1e-12  Score=86.46  Aligned_cols=37  Identities=46%  Similarity=0.689  Sum_probs=35.8

Q ss_pred             cChhHHHHHhhcCCCccccccCCCCCccchhhHHHhh
Q 011684          188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA  224 (479)
Q Consensus       188 asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~  224 (479)
                      +||+||+||+|+|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA   38 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence            6999999999999999999999999999999999986

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.16  E-value=6e-11  Score=137.87  Aligned_cols=60  Identities=22%  Similarity=0.429  Sum_probs=59.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      |+|++|+|++||+|++||+||+||+|||+++|+||.+|+|.+|++++|+.|.+|++|+.|
T Consensus      1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.16  E-value=6.8e-11  Score=136.91  Aligned_cols=63  Identities=16%  Similarity=0.401  Sum_probs=60.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      |+|++|+|++||.|++||+||+||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+..
T Consensus      1086 G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999643

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=99.13  E-value=2.4e-11  Score=88.19  Aligned_cols=41  Identities=34%  Similarity=0.565  Sum_probs=38.8

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhc
Q 011684          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (479)
Q Consensus       185 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  225 (479)
                      ++.+||++|+||+|+||||..|.|||++|||+++||++|+.
T Consensus         6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~   46 (49)
T 1w85_I            6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   46 (49)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence            56789999999999999999999999999999999999975

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=99.12  E-value=2.6e-11  Score=88.73  Aligned_cols=42  Identities=38%  Similarity=0.620  Sum_probs=38.8

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhc
Q 011684          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (479)
Q Consensus       184 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  225 (479)
                      .++.+||.+|+||+|+||||..|.|||++|||+++||++|+.
T Consensus         8 ~~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~   49 (51)
T 1bal_A            8 NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   49 (51)
T ss_dssp             SSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSC
T ss_pred             CCCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhc
Confidence            356889999999999999999999999999999999998754

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=99.03  E-value=8.2e-11  Score=89.94  Aligned_cols=43  Identities=30%  Similarity=0.448  Sum_probs=39.8

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhcc
Q 011684          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (479)
Q Consensus       184 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  226 (479)
                      .++.+||+||+||+|+||||..|.|||++|||+++||++|+..
T Consensus         8 ~~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   50 (64)
T 2f60_K            8 LRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL   50 (64)
T ss_dssp             HHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            3567899999999999999999999999999999999999754

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=99.01  E-value=2.7e-10  Score=88.65  Aligned_cols=43  Identities=37%  Similarity=0.570  Sum_probs=39.9

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhcc
Q 011684          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (479)
Q Consensus       184 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  226 (479)
                      .++++||+||+||+|+||||..|.|||++|||+++||++|+..
T Consensus        14 ~~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             CSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             CccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            3567999999999999999999999999999999999999764

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=99.00  E-value=1.6e-10  Score=87.87  Aligned_cols=42  Identities=43%  Similarity=0.588  Sum_probs=39.4

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhcc
Q 011684          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (479)
Q Consensus       185 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  226 (479)
                      ++.+||++|+||+++||||..|.|||++|||+++||++|+..
T Consensus         4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~   45 (62)
T 1w4i_A            4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE   45 (62)
T ss_dssp             SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            467899999999999999999999999999999999999864

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.90  E-value=2.3e-09  Score=94.26  Aligned_cols=71  Identities=24%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             EEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEE---ecCCCCeec---CCC-eEEE
Q 011684           60 EIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAI---VVPEGESAP---VGA-AIGI  131 (479)
Q Consensus        60 ~i~~P~l~~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i---~~~~g~~v~---~G~-~l~~  131 (479)
                      .+..|.+|.      |+.+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++   +++.|+.|.   .|+ .|+.
T Consensus        38 ~~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~  111 (136)
T 1zko_A           38 NHAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK  111 (136)
T ss_dssp             HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred             hhhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence            344565553      445544 99999999999999999999999999999999999   888999998   898 9999


Q ss_pred             EecCh
Q 011684          132 LAETE  136 (479)
Q Consensus       132 i~~~~  136 (479)
                      |...+
T Consensus       112 i~~~~  116 (136)
T 1zko_A          112 MEISD  116 (136)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            97544

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.88  E-value=2e-09  Score=92.04  Aligned_cols=66  Identities=21%  Similarity=0.441  Sum_probs=60.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeccee-----------------------------eEEEcCCCeEEEEEecCCCCe
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKAD-----------------------------MDVETFYDGILAAIVVPEGES  122 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~-----------------------------~~v~ap~~G~v~~i~~~~g~~  122 (479)
                      .|+|.+|+|++||.|++||+|++|++.++.                             ..|+||++|+|.++.+++|+.
T Consensus         9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~   88 (116)
T 2k32_A            9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY   88 (116)
T ss_dssp             CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred             CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence            499999999999999999999999988655                             489999999999999999999


Q ss_pred             ecCC-CeEEEEecChh
Q 011684          123 APVG-AAIGILAETEA  137 (479)
Q Consensus       123 v~~G-~~l~~i~~~~~  137 (479)
                      |..| ++|+.|.+.+.
T Consensus        89 v~~g~~~l~~i~~~~~  104 (116)
T 2k32_A           89 VSASTTELVRVTNLNP  104 (116)
T ss_dssp             ECTTTSCCEEEECSCT
T ss_pred             EcCCCcEEEEEECCCe
Confidence            9999 99999987654

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.86  E-value=6.3e-10  Score=122.46  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      .|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI  717 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence            3999999999999999999999999999999999999999999999999999999999876

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.81  E-value=2.4e-09  Score=124.21  Aligned_cols=61  Identities=21%  Similarity=0.397  Sum_probs=53.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      |+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1104 G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             EEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             eEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999875

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.48  E-value=2.1e-07  Score=80.93  Aligned_cols=72  Identities=29%  Similarity=0.297  Sum_probs=56.6

Q ss_pred             EEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecC---CCCee---cCCC-eEE
Q 011684           59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP---EGESA---PVGA-AIG  130 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~---~g~~v---~~G~-~l~  130 (479)
                      +++..|.+|+      |+.+.+ ++||+|++||.||+||+||+..+|.||.+|+|.+++.+   ..+.|   +.|+ -|+
T Consensus        28 t~~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (128)
T 1onl_A           28 TDYAQDALGD------VVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIF  101 (128)
T ss_dssp             CHHHHHHHCS------EEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             ehHHhhcCCC------ceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEE
Confidence            3344555553      555544 99999999999999999999999999999999999754   45666   6777 888


Q ss_pred             EEecCh
Q 011684          131 ILAETE  136 (479)
Q Consensus       131 ~i~~~~  136 (479)
                      .|...+
T Consensus       102 ~i~~~~  107 (128)
T 1onl_A          102 RLKPRD  107 (128)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            887543

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.45  E-value=3.4e-07  Score=79.68  Aligned_cols=72  Identities=22%  Similarity=0.135  Sum_probs=56.3

Q ss_pred             EEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCC---CCeec---CCC-eEE
Q 011684           59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE---GESAP---VGA-AIG  130 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~---g~~v~---~G~-~l~  130 (479)
                      +++..|.+|.      |+.+.+ ++||+|++||.||+||+||+..+|.||.+|+|.+++.+.   .+.|.   .|+ -|+
T Consensus        29 td~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~  102 (128)
T 3a7l_A           29 TEHAQELLGD------MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIF  102 (128)
T ss_dssp             CHHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred             ehHHhccCCc------eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEE
Confidence            3444555553      555544 999999999999999999999999999999999998654   45565   676 888


Q ss_pred             EEecCh
Q 011684          131 ILAETE  136 (479)
Q Consensus       131 ~i~~~~  136 (479)
                      .|...+
T Consensus       103 ~i~~~~  108 (128)
T 3a7l_A          103 KIKASD  108 (128)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            887544

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.44  E-value=1.1e-07  Score=83.09  Aligned_cols=72  Identities=21%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             EEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCC---Cee---cCCC-eEE
Q 011684           59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG---ESA---PVGA-AIG  130 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g---~~v---~~G~-~l~  130 (479)
                      +++.+|.+|      .|+.+.+ ++||+|++||+||+||+||+..+|.||.+|+|.+++.+.+   +.|   +.|+ -|+
T Consensus        28 td~a~~~lG------~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (131)
T 1hpc_A           28 TDHAQDHLG------EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI  101 (131)
T ss_dssp             CHHHHHHHC------SEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             ehhhcccCC------CceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence            334455555      3666666 9999999999999999999999999999999999986554   456   3566 788


Q ss_pred             EEecCh
Q 011684          131 ILAETE  136 (479)
Q Consensus       131 ~i~~~~  136 (479)
                      .|...+
T Consensus       102 ~i~~~~  107 (131)
T 1hpc_A          102 KIKPTS  107 (131)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            887543

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.01  E-value=9.5e-06  Score=84.15  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             eEEEEEEEc-CCCCeecCCCeEEEEEec------------------------------------------------ceee
Q 011684           72 EGKIVSWIK-SEGDVLSKGESVVVVESD------------------------------------------------KADM  102 (479)
Q Consensus        72 eg~i~~w~v-~~Gd~V~~g~~l~~vet~------------------------------------------------K~~~  102 (479)
                      .|+|.+++| ++||.|++||+|++|++.                                                ....
T Consensus       129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~  208 (413)
T 3ne5_B          129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF  208 (413)
T ss_dssp             CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred             CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence            399999998 999999999999999942                                                1256


Q ss_pred             EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus       209 ~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~~  242 (413)
T 3ne5_B          209 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  242 (413)
T ss_dssp             EEECSSSEEEEECCCCTTCEECTTSCSEEEEEEE
T ss_pred             EEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCCC
Confidence            8999999999999999999999999999997543

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.99  E-value=4.3e-06  Score=81.58  Aligned_cols=64  Identities=22%  Similarity=0.288  Sum_probs=56.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K-----------------------------------------------------   99 (479)
                      |+|.+|+|++||.|++||+|+++++..                                                     
T Consensus        31 G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a  110 (277)
T 2f1m_A           31 GIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA  110 (277)
T ss_dssp             EEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999998631                                                     


Q ss_pred             ------------------eeeEEEcCCCeEEEEEecCCCCeecCC--CeEEEEecCh
Q 011684          100 ------------------ADMDVETFYDGILAAIVVPEGESAPVG--AAIGILAETE  136 (479)
Q Consensus       100 ------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G--~~l~~i~~~~  136 (479)
                                        ....|+||++|+|..+.+++|+.|..|  ++|+.|.+.+
T Consensus       111 ~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~  167 (277)
T 2f1m_A          111 NAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD  167 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence                              135899999999999999999999999  6999997643

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.98  E-value=8.9e-06  Score=82.30  Aligned_cols=64  Identities=22%  Similarity=0.297  Sum_probs=57.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecce----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKA----------------------------------------------------  100 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~----------------------------------------------------  100 (479)
                      |+|.+++|++||.|++||+|++++....                                                    
T Consensus        66 G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l  145 (359)
T 3lnn_A           66 GRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASES  145 (359)
T ss_dssp             EEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997531                                                    


Q ss_pred             ------------------------eeEEEcCCCeEEEEEecCCCCeecC-CCeEEEEecCh
Q 011684          101 ------------------------DMDVETFYDGILAAIVVPEGESAPV-GAAIGILAETE  136 (479)
Q Consensus       101 ------------------------~~~v~ap~~G~v~~i~~~~g~~v~~-G~~l~~i~~~~  136 (479)
                                              ...|+||++|+|.++.+++|+.|.. |++|+.|.+.+
T Consensus       146 ~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~  206 (359)
T 3lnn_A          146 QRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLS  206 (359)
T ss_dssp             HHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCS
T ss_pred             HHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCC
Confidence                                    2579999999999999999999998 99999997644

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.92  E-value=1e-05  Score=81.28  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K-----------------------------------------------------   99 (479)
                      |+|.+|+|++||.|++||+|++++...                                                     
T Consensus        40 G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a  119 (341)
T 3fpp_A           40 GQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNA  119 (341)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred             cEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence            999999999999999999999998641                                                     


Q ss_pred             --------------------------------eeeEEEcCCCeEEEEEecCCCCeecCCCe---EEEEecCh
Q 011684          100 --------------------------------ADMDVETFYDGILAAIVVPEGESAPVGAA---IGILAETE  136 (479)
Q Consensus       100 --------------------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~---l~~i~~~~  136 (479)
                                                      ....|+||++|+|.++.+.+|+.|..|++   |+.|.+..
T Consensus       120 ~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          120 ATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS  191 (341)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence                                            11569999999999999999999999987   88887643

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.90  E-value=1.7e-05  Score=68.46  Aligned_cols=62  Identities=21%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC---ee---cCCC-eEEEEec
Q 011684           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE---SA---PVGA-AIGILAE  134 (479)
Q Consensus        73 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~---~v---~~G~-~l~~i~~  134 (479)
                      |.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++..+..+   .+   +-|+ =|+.|..
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~  101 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTF  101 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEE
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEE
Confidence            45555555 79999999999999999999999999999999999755433   23   3444 3666653

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.74  E-value=4e-05  Score=67.41  Aligned_cols=63  Identities=32%  Similarity=0.281  Sum_probs=48.1

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCe---e---cCCC-eEEEEecC
Q 011684           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES---A---PVGA-AIGILAET  135 (479)
Q Consensus        73 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~---v---~~G~-~l~~i~~~  135 (479)
                      |.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.-+..+.   |   +.|+ =|+.|...
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~  124 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQ  124 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECS
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEEC
Confidence            44555444 899999999999999999999999999999999997554432   2   3443 56666543

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.70  E-value=3.9e-05  Score=67.12  Aligned_cols=44  Identities=30%  Similarity=0.293  Sum_probs=38.3

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        73 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      |.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN   93 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN   93 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence            34444433 899999999999999999999999999999999885

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.70  E-value=2.3e-05  Score=79.93  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=56.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K-----------------------------------------------------   99 (479)
                      |+|.+++|++||.|++||+|++|+...                                                     
T Consensus        52 G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~a  131 (369)
T 1vf7_A           52 GIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQA  131 (369)
T ss_dssp             EEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997532                                                     


Q ss_pred             ----eeeEEEcCCCeEEEEEecCCCCeecCC--CeEEEEecC
Q 011684          100 ----ADMDVETFYDGILAAIVVPEGESAPVG--AAIGILAET  135 (479)
Q Consensus       100 ----~~~~v~ap~~G~v~~i~~~~g~~v~~G--~~l~~i~~~  135 (479)
                          ....|+||++|+|.++.+++|+.|..|  ++|+.|.+.
T Consensus       132 ~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~  173 (369)
T 1vf7_A          132 RINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL  173 (369)
T ss_dssp             HHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred             HHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence                135899999999999999999999995  899998754

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.43  E-value=0.00019  Score=63.76  Aligned_cols=44  Identities=25%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        73 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN  103 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN  103 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence            34444433 799999999999999999999999999999999886

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.18  E-value=1.6e-05  Score=80.55  Aligned_cols=63  Identities=22%  Similarity=0.336  Sum_probs=54.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecc----------------------------------------------------
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------   99 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K----------------------------------------------------   99 (479)
                      .|+|.+++|++||.|++||+|++++...                                                    
T Consensus        40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  119 (369)
T 4dk0_A           40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT  119 (369)
T ss_dssp             CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred             CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence            3899999999999999999999998642                                                    


Q ss_pred             ---------------------------------eeeEEEcCCCeEEEEEecCCCCeecCCCe---EEEEec
Q 011684          100 ---------------------------------ADMDVETFYDGILAAIVVPEGESAPVGAA---IGILAE  134 (479)
Q Consensus       100 ---------------------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~---l~~i~~  134 (479)
                                                       ....|+||++|+|.++.+++|+.|..|++   |+.|.+
T Consensus       120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~  190 (369)
T 4dk0_A          120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD  190 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence                                             01359999999999999999999999998   666644

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.73  E-value=0.003  Score=63.39  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           75 IVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        75 i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +++.+++.||.|++||+|++|..    .....+|+||.+|+|...  ...-.|..|+.|+.|...
T Consensus       267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV  329 (331)
T ss_dssp             EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred             EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence            77779999999999999999997    356789999999999654  445788999999999653

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.72  E-value=0.0007  Score=55.84  Aligned_cols=47  Identities=15%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             CCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           89 GESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        89 g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      |..+|.+|.++....|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~   51 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM   51 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence            45668888899899999999999999999999999999999999753

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=96.57  E-value=0.0054  Score=62.06  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      | +++..++.||.|++||+|+.|+.    .+...+|.||.+|+|...  ..+..|..|+.|+.|...
T Consensus       276 G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          276 G-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED  339 (354)
T ss_dssp             E-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred             E-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence            5 78888999999999999999997    488899999999999655  578899999999998654

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=96.52  E-value=0.0056  Score=62.35  Aligned_cols=59  Identities=12%  Similarity=0.085  Sum_probs=50.6

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEe------cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           74 KIVSWIKSEGDVLSKGESVVVVES------DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        74 ~i~~w~v~~Gd~V~~g~~l~~vet------~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      =|.+.+++.||.|++||+|++|..      .....+|+||.+|+|..  ....-.|..|+.|+.|..
T Consensus       299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~--~~~~p~V~~G~~l~~i~~  363 (368)
T 3fmc_A          299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL--HFASASVHQGTELYKVMT  363 (368)
T ss_dssp             EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE--ECSSSEECTTCEEEEEEE
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE--EeCCCccCCCCEEEEEee
Confidence            356699999999999999999997      56788999999999954  455688999999998864

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.13  E-value=0.006  Score=46.52  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             EEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +|.||.+|+|.++++++|+.|..|++|+.|+..
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   33 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM   33 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence            378999999999999999999999999999764

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.04  E-value=0.0071  Score=46.79  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=32.2

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ...|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~   42 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence            45789999999999999999999999999999764

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.01  E-value=0.0089  Score=45.67  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|.||.+|+|.++++++|+.|..|++|+.++...
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   40 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK   40 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence            46899999999999999999999999999997543

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.74  E-value=0.0099  Score=53.35  Aligned_cols=65  Identities=26%  Similarity=0.417  Sum_probs=55.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE-------------------
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------  115 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i-------------------  115 (479)
                      ..|.-| +     .|+|+.+. +..|.|-.    |+-++...++   ..++||.+|+|..+                   
T Consensus        13 ~~i~aP-~-----~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLi   82 (161)
T 1f3z_A           13 IEIIAP-L-----SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV   82 (161)
T ss_dssp             EEEECS-S-----CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cEEEec-C-----CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEE
Confidence            346666 3     39999977 78898776    8999988876   58899999999988                   


Q ss_pred             ----------------ecCCCCeecCCCeEEEEe
Q 011684          116 ----------------VVPEGESAPVGAAIGILA  133 (479)
Q Consensus       116 ----------------~~~~g~~v~~G~~l~~i~  133 (479)
                                      ++++||.|..|++|+++.
T Consensus        83 HiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           83 HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence                            899999999999999984

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=95.67  E-value=0.012  Score=49.45  Aligned_cols=34  Identities=12%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +.|.|+.+|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            5789999999999999999999999999999865

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=95.39  E-value=0.011  Score=52.77  Aligned_cols=65  Identities=17%  Similarity=0.293  Sum_probs=54.4

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE-------------------
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------  115 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i-------------------  115 (479)
                      ..|.-| +     .|+|+.+. ++.|.|-.    |+.++...++   ..+.||.+|+|..+                   
T Consensus         8 ~~i~aP-~-----~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi   77 (154)
T 2gpr_A            8 LKVLAP-C-----DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL   77 (154)
T ss_dssp             EEEECS-S-----SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred             CEEEec-C-----CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence            356666 3     39999975 88998876    8999988875   58999999999984                   


Q ss_pred             ----------------ecCCCCeecCCCeEEEEe
Q 011684          116 ----------------VVPEGESAPVGAAIGILA  133 (479)
Q Consensus       116 ----------------~~~~g~~v~~G~~l~~i~  133 (479)
                                      ++++||.|..|++|+++.
T Consensus        78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence                            899999999999999984

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=95.29  E-value=0.012  Score=46.63  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=31.5

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ..|.||.+|+|.++++++|+.|..|++|+.|+..
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   39 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM   39 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEECS
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEEec
Confidence            4699999999999999999999999999999754

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=95.11  E-value=0.014  Score=52.50  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             eEEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE--------------------------------
Q 011684           72 EGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI--------------------------------  115 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i--------------------------------  115 (479)
                      .|+|+.+ .+..|.|-.    |+.++...+   ...++||.+|+|..+                                
T Consensus        20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g   95 (162)
T 1ax3_A           20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG   95 (162)
T ss_dssp             SEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred             ceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence            3999997 678888776    899998776   458899999999988                                


Q ss_pred             ---ecCCCCeecCCCeEEEEe
Q 011684          116 ---VVPEGESAPVGAAIGILA  133 (479)
Q Consensus       116 ---~~~~g~~v~~G~~l~~i~  133 (479)
                         ++++||.|..|++|+.+.
T Consensus        96 F~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           96 FTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             EEESCCCCSEECSEEEEEEEC
T ss_pred             cEEEEeCCCEEcCCCEEEEEC
Confidence               889999999999999984

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=94.99  E-value=0.043  Score=54.82  Aligned_cols=60  Identities=22%  Similarity=0.181  Sum_probs=49.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      +-+....++.||.|++||+|++|-.    .+...+|.||.+|+|.-.  ...-.|..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEee
Confidence            3355678899999999999999965    567789999999999544  46678899999998854

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=94.65  E-value=0.047  Score=52.61  Aligned_cols=55  Identities=13%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~   57 (277)
T 2f1m_A            3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT   57 (277)
T ss_dssp             -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHH
T ss_pred             eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcHH
Confidence            334444444455677765 4678999999999999999999999999999997654

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=94.32  E-value=0.032  Score=45.66  Aligned_cols=36  Identities=11%  Similarity=0.236  Sum_probs=32.3

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.++.+|+|.++++++|+.|..|++|+.|+...
T Consensus        14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~   49 (99)
T 2ejm_A           14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK   49 (99)
T ss_dssp             CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred             ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence            456899999999999999999999999999997643

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=94.26  E-value=0.023  Score=46.03  Aligned_cols=36  Identities=17%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.||.+|+|.++++++|+.|..|++|+.|+...
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k   60 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMK   60 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEeccc
Confidence            456899999999999999999999999999997643

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=94.21  E-value=0.039  Score=42.95  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             eEEEcCCCeEEEEE-------ecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAI-------VVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i-------~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|.||..|+|.++       ++++|+.|..|++|+.|+...
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k   46 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK   46 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence            46899999999998       899999999999999997643

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=93.64  E-value=0.065  Score=49.20  Aligned_cols=40  Identities=10%  Similarity=0.240  Sum_probs=30.7

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEE
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA  113 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~  113 (479)
                      ....+| .|.        .++|++||.|++||.||+-.      .|-+..+|+|.
T Consensus        13 er~~Ip-yGA--------~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~   52 (193)
T 2xha_A           13 ERLILS-PKA--------KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   52 (193)
T ss_dssp             EEEEEC-TTC--------EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEECC-CCC--------EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence            446677 554        78999999999999999743      66677777764

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=93.54  E-value=0.052  Score=54.34  Aligned_cols=56  Identities=13%  Similarity=0.159  Sum_probs=45.0

Q ss_pred             CCCCeecCCCeEEEEEec-ceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           81 SEGDVLSKGESVVVVESD-KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        81 ~~Gd~V~~g~~l~~vet~-K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|..|++|+.|...+
T Consensus        36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~   92 (359)
T 3lnn_A           36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD   92 (359)
T ss_dssp             EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred             eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence            334433444556677775 67889999999999999999999999999999998754

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=93.50  E-value=0.074  Score=47.37  Aligned_cols=45  Identities=29%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EEcCCCeEEEEEe
Q 011684           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAIV  116 (479)
Q Consensus        72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-v~ap~~G~v~~i~  116 (479)
                      ||.-+-..+.+||.|.+||.|+-|.|.|-++- ++||.+|+|.-+.
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~  153 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN  153 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence            56677788999999999999999999999887 9999999997664

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=93.32  E-value=0.073  Score=52.81  Aligned_cols=57  Identities=18%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             EcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        79 ~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .++.|+.-..=..-..|+.. -...|.++.+|+|.++++++|+.|..|++|+.|...+
T Consensus        10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~   66 (341)
T 3fpp_A           10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQ   66 (341)
T ss_dssp             ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHH
T ss_pred             EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHH
Confidence            34555554444555677765 4678999999999999999999999999999997654

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=93.00  E-value=0.048  Score=42.07  Aligned_cols=30  Identities=13%  Similarity=0.123  Sum_probs=27.4

Q ss_pred             cCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          106 TFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       106 ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ++.+|+|.++++++|+.|..|++|+.++..
T Consensus        12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~   41 (77)
T 2l5t_A           12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTD   41 (77)
T ss_dssp             SCCCEEEEECSCCTTCEECSCCCCCEEESS
T ss_pred             CCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence            467999999999999999999999999764

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=92.84  E-value=0.12  Score=40.06  Aligned_cols=28  Identities=7%  Similarity=0.176  Sum_probs=25.9

Q ss_pred             CeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          109 DGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       109 ~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +|+|.++++++|+.|..|++|+.++...
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~   41 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEGDK   41 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence            8999999999999999999999997643

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=92.43  E-value=0.15  Score=41.09  Aligned_cols=29  Identities=14%  Similarity=0.113  Sum_probs=26.3

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+|.++++++||.|..|++|+.|+...
T Consensus        17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K   45 (93)
T 1k8m_A           17 REVTVKEWYVKEGDTVSQFDSICEVQSDK   45 (93)
T ss_dssp             CCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence            58999999999999999999999997543

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.17  E-value=0.14  Score=41.81  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+|.++++++||.|..|++|+.|+...
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K   48 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIETDK   48 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEEccc
Confidence            47999999999999999999999998644

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=91.98  E-value=0.31  Score=44.76  Aligned_cols=45  Identities=24%  Similarity=0.321  Sum_probs=40.0

Q ss_pred             EEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCee
Q 011684           77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA  123 (479)
Q Consensus        77 ~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v  123 (479)
                      .++|++||.|++||.||+.  |..+..|-+..+|+|.--.+.+|.++
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~  107 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI  107 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence            7899999999999999976  89999999999999987777777554

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=91.86  E-value=0.086  Score=40.89  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=27.3

Q ss_pred             cCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          106 TFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       106 ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ++.+|+|.++++++||.|..|++|+.++...
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k   42 (79)
T 1ghj_A           12 SIADGTVATWHKKPGEAVKRDELIVDIETDK   42 (79)
T ss_dssp             SCSCEEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred             CCCCEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence            3468999999999999999999999997543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=91.84  E-value=0.15  Score=40.34  Aligned_cols=29  Identities=14%  Similarity=0.125  Sum_probs=26.4

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+|.++++++||.|..|++|+.|+...
T Consensus        18 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   46 (87)
T 3crk_C           18 TMGTVQRWEKKVGEKLSEGDLLAEIETDX   46 (87)
T ss_dssp             CEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             CcEEEEEEEcCCCCEEcCCCEEEEEECCc
Confidence            58999999999999999999999997643

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=91.75  E-value=0.13  Score=39.89  Aligned_cols=32  Identities=16%  Similarity=0.143  Sum_probs=28.4

Q ss_pred             EcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          105 ETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       105 ~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      -++..|+|.++++++|+.|..|++|+.++...
T Consensus        11 g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k   42 (81)
T 1gjx_A           11 GGHENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             SSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             CCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence            35689999999999999999999999997643

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=91.75  E-value=0.17  Score=42.05  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+|.++++++||.|..|++|++|+...
T Consensus        20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K   48 (108)
T 2dne_A           20 QAGTIARWEKKEGDKINEGDLIAEVETDK   48 (108)
T ss_dssp             CEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence            47999999999999999999999998643

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=91.64  E-value=0.16  Score=51.17  Aligned_cols=55  Identities=15%  Similarity=0.109  Sum_probs=39.8

Q ss_pred             CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|...+
T Consensus        24 ~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~   78 (369)
T 1vf7_A           24 EAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPAT   78 (369)
T ss_dssp             -----CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHH
T ss_pred             EeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence            333333333344566654 4578999999999999999999999999999997654

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=91.46  E-value=0.19  Score=51.64  Aligned_cols=54  Identities=13%  Similarity=0.079  Sum_probs=41.1

Q ss_pred             CCeecCCCeEEEEEec-ceeeEEEcCCCeEEEEEec-CCCCeecCCCeEEEEecCh
Q 011684           83 GDVLSKGESVVVVESD-KADMDVETFYDGILAAIVV-PEGESAPVGAAIGILAETE  136 (479)
Q Consensus        83 Gd~V~~g~~l~~vet~-K~~~~v~ap~~G~v~~i~~-~~g~~v~~G~~l~~i~~~~  136 (479)
                      |+.-..=.....|+.+ .-...|.++.+|+|.++++ ++||.|..|++|+.|...+
T Consensus       102 ~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~  157 (413)
T 3ne5_B          102 GPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD  157 (413)
T ss_dssp             ECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred             eecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence            3333333344556543 4568899999999999998 9999999999999998543

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=91.45  E-value=0.012  Score=46.61  Aligned_cols=35  Identities=9%  Similarity=0.070  Sum_probs=31.0

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ++|.+|.-|+|.++++++|+.|..|++|+.|+...
T Consensus         3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k   37 (85)
T 2k7v_A            3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDK   37 (85)
T ss_dssp             SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCC
T ss_pred             cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccc
Confidence            56788888999999999999999999999997543

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=90.62  E-value=0.24  Score=49.89  Aligned_cols=48  Identities=13%  Similarity=0.247  Sum_probs=35.7

Q ss_pred             EEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEE---------------------------e--cCCCCeecCCC
Q 011684           77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI---------------------------V--VPEGESAPVGA  127 (479)
Q Consensus        77 ~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i---------------------------~--~~~g~~v~~G~  127 (479)
                      .++|++||.|++||.||+-.      .|-+..+|+|...                           .  +++|+.|..|+
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~  135 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL  135 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTC
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCc
Confidence            88999999999999999843      5555566655322                           2  66777777777


Q ss_pred             eEE
Q 011684          128 AIG  130 (479)
Q Consensus       128 ~l~  130 (479)
                      +|+
T Consensus       136 vla  138 (352)
T 2xhc_A          136 PLS  138 (352)
T ss_dssp             BSB
T ss_pred             EEe
Confidence            777

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=90.42  E-value=0.35  Score=41.50  Aligned_cols=29  Identities=14%  Similarity=0.133  Sum_probs=26.3

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .+|+|.++++++||.|..|++|++|+...
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K   68 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIETDK   68 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEEcCc
Confidence            57999999999999999999999998644

>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}

Probab=90.38  E-value=4.2  Score=41.74  Aligned_cols=28  Identities=11%  Similarity=0.064  Sum_probs=25.0

Q ss_pred             EEEEEecccccchHHHHHHHHHHHHHhc
Q 011684          445 LVNVTADHRIIYGADLAAFLQTFSKIVE  472 (479)
Q Consensus       445 ~lslt~DHRvvDG~~aa~Fl~~l~~~le  472 (479)
                      -|-+++||-++||+-...|+++|.+..+
T Consensus       135 ~l~l~~HH~i~Dg~S~~~l~~~l~~~Y~  162 (493)
T 4hvm_A          135 VLGVVAHQMLLDARSRYMVLGAVWQAYY  162 (493)
T ss_dssp             EEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEEecchhhccHHHHHHHHHHHHHHhC
Confidence            4678999999999999999999998763

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=89.57  E-value=0.13  Score=47.10  Aligned_cols=46  Identities=13%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             cCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEE--------------------------E--ecCCCCeecCCCeEEE
Q 011684           80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAA--------------------------I--VVPEGESAPVGAAIGI  131 (479)
Q Consensus        80 v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~--------------------------i--~~~~g~~v~~G~~l~~  131 (479)
                      |++|++|+.||+|+      -...|-|..+|+|.-                          +  +|++||.|..|++|+.
T Consensus        85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D  158 (193)
T 2xha_A           85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE  158 (193)
T ss_dssp             CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred             cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence            89999999999998      234455666666641                          3  7899999999999874

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=88.21  E-value=0.11  Score=52.12  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             cCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        80 v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ++.|+.-..=..-..|+.. -...|.++.+|+|.++++++|+.|..|++|+.|...+
T Consensus        12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~   67 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDSTT   67 (369)
T ss_dssp             CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred             EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence            4445554455556677744 4668999999999999999999999999999997654

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=87.13  E-value=1  Score=40.91  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=51.2

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCee----cCCCeEEEEEecceeeEEEcCCCeEEEEE------------------
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI------------------  115 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V----~~g~~l~~vet~K~~~~v~ap~~G~v~~i------------------  115 (479)
                      ...|.-| +.     |+++.+. ++-|.|    --||-+++.=++.   .|.||++|+|..+                  
T Consensus        34 ~~~i~aP-v~-----G~vi~L~-eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL  103 (183)
T 3our_B           34 AIEIIAP-LS-----GEIVNIE-DVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELF  103 (183)
T ss_dssp             CEEEECS-SC-----EEEEEGG-GSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ceEEEee-cc-----eEEEEch-hCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence            3456667 33     8888654 666765    2488888766543   7999999999887                  


Q ss_pred             -----------------ecCCCCeecCCCeEEEEec
Q 011684          116 -----------------VVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       116 -----------------~~~~g~~v~~G~~l~~i~~  134 (479)
                                       +|++||.|..|++|+.+.-
T Consensus       104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             EEecccccccCCccceEEEeCcCEEcCCCEEEEECH
Confidence                             7899999999999999853

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=86.91  E-value=0.38  Score=37.09  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=29.0

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      ..+|.-|      ..|+|.++++++||.|..|++|+.|+..
T Consensus        41 ~~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           41 SMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             EEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            4566666      2489999999999999999999999753

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=86.27  E-value=0.12  Score=40.27  Aligned_cols=29  Identities=10%  Similarity=0.084  Sum_probs=26.1

Q ss_pred             CCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684          107 FYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus       107 p~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ...|+|.++++++||.|..|++|+.++..
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   42 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIETD   42 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence            36899999999999999999999999653

>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*

Probab=86.10  E-value=3.7  Score=43.40  Aligned_cols=39  Identities=28%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             EEEEEeccHHHHHHHHhCCC---CCCHHHHHHHHHHHHHhhC
Q 011684          285 VGYPIITDALDALYEKVKPK---GVTMTALLAKAAAMALVQH  323 (479)
Q Consensus       285 ~~~~iDvt~l~~~~~~~k~~---~~s~~~~likAva~Al~~~  323 (479)
                      +...++.....++++.+|++   |+|+++++.-|++.|+.++
T Consensus       280 ~~~~ls~~~t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~  321 (519)
T 3fot_A          280 VIHKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDH  321 (519)
T ss_dssp             EEEECCHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCHHHHHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhh
Confidence            56667777777888888888   9999999999999999874

>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2

Probab=85.98  E-value=12  Score=37.22  Aligned_cols=29  Identities=24%  Similarity=0.345  Sum_probs=25.6

Q ss_pred             EEEEEEecccccchHHHHHHHHHHHHHhc
Q 011684          444 MLVNVTADHRIIYGADLAAFLQTFSKIVE  472 (479)
Q Consensus       444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le  472 (479)
                      .-|-+.+||-++||+-...|+++|.++..
T Consensus       118 ~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~  146 (436)
T 1l5a_A          118 HLIYTRAHHIVLDGYGMMLFEQRLSQHYQ  146 (436)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeehhheecHhHHHHHHHHHHHHHH
Confidence            34679999999999999999999998765

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=85.95  E-value=0.68  Score=50.69  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.||..|+|.+++|++||.|..||+|++|+...
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK  647 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK  647 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence            456999999999999999999999999999998644

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=81.33  E-value=1.3  Score=51.77  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|.||..|+|.++++++||.|..||+|++|+...
T Consensus      1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A         1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred             cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence            46999999999999999999999999999998654

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=81.31  E-value=1.3  Score=51.42  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ...|.||..|+|.+++|++||.|..|++|+.|+...
T Consensus      1077 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A         1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp             SSEEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred             CceeecCceEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            357999999999999999999999999999998654

>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2

Probab=80.74  E-value=47  Score=32.87  Aligned_cols=162  Identities=12%  Similarity=0.106  Sum_probs=87.9

Q ss_pred             EEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeC------C--Ce-
Q 011684          284 RVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAIN------G--GL-  354 (479)
Q Consensus       284 ~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~------~--gl-  354 (479)
                      .+...++.....++++..++.|+|++.+++-|.+.+|.++-.              +.+-+|+.+..-      +  |. 
T Consensus       210 ~~~~~l~~~~~~~l~~~a~~~~~t~~~~l~aa~~~~L~~~~g--------------~dv~ig~~~~~R~~~~~~~~vG~f  275 (436)
T 1l5a_A          210 SLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEP--------------DAPWLWLPFMNRWGSVAANVPGLM  275 (436)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHST--------------TCCEEEEEECCCTTSGGGGSCSCC
T ss_pred             eeEEecCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhC--------------CceEEeeecccCCChHHhcCcceE
Confidence            445566655555555555566999999999999999987522              223455555421      1  32 


Q ss_pred             --EEeE-EecCCCCCHHHHHHHHHHHHHHHHcCC-C---------CC----CCCCCCeEEEeecCC--CCccceeecCCC
Q 011684          355 --ITPV-LQDADKLDLYLLSQKWKELVEKARSKQ-L---------QP----HEYNSGTFTLSNLGM--FGVDRFDAILPP  415 (479)
Q Consensus       355 --~~pv-i~~a~~~sl~ei~~~~~~l~~~ar~~~-l---------~~----~d~~~~tftISnlg~--~G~~~ftpii~~  415 (479)
                        ++|+ +......++.++.+.+++....+...+ .         ..    ..+..-.|.+.+...  ++...+...   
T Consensus       276 ~n~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~---  352 (436)
T 1l5a_A          276 VNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELK---  352 (436)
T ss_dssp             CEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEEE---
T ss_pred             EEEEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhcccccCCCccceEEEeeccCccccCCCeeEEE---
Confidence              2444 333456689999998887665553322 1         11    111223344443321  111111100   


Q ss_pred             CCceEEEeCcce---EEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhc
Q 011684          416 GQGAIMAVGASK---PTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE  472 (479)
Q Consensus       416 ~~~ail~vG~~~---~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le  472 (479)
                          .+.-+...   -......+|.      +.+.+.||-.+++...+.+|++.|..+|+
T Consensus       353 ----~~~~~~~~~l~l~v~~~~~~~------l~~~~~y~~~~~~~~~i~~l~~~~~~~l~  402 (436)
T 1l5a_A          353 ----VLASGSAEGINFTFRGSPQHE------LCLDITADLASYPQSHWQSHCERFPRFFE  402 (436)
T ss_dssp             ----EEEECCCCSEEEEEEECTTSC------EEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred             ----ecCCCCccceEEEEEecCCCc------EEEEEEeChhhCCHHHHHHHHHHHHHHHH
Confidence                01111111   1111112332      77889999999999999888888777664

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=80.48  E-value=1.1  Score=49.25  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|.||..|+|.++++++||.|..|++|++|+...
T Consensus       650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamK  684 (718)
T 3bg3_A          650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMK  684 (718)
T ss_dssp             SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSS
T ss_pred             ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEeccc
Confidence            56999999999999999999999999999998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	9e-51
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	9e-42
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	3e-41
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	6e-39
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	3e-34
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	3e-22
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	7e-22
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	4e-21
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-20
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-19
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	6e-14
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-13
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	9e-13
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	1e-10
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	9e-10
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	5e-09

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  170 bits (432), Expect = 9e-51
 Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 257 GSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDAL-------YEKVKPKGVTM 308
               VP T ++  V++ ++E+  S         +    +  L       +EK     +  
Sbjct: 3   SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62

Query: 309 TALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLY 368
            +   KA   AL ++P VNAS  DG    Y+   ++++AV+   GL+TPVL+D D L + 
Sbjct: 63  MSFYVKAVVEALKRYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121

Query: 369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKP 428
            + +K KEL  K R  +L   +   G FT++N G+FG      I+ P Q AI+ + A K 
Sbjct: 122 DIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIK- 180

Query: 429 TVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
                 +G   +   M + ++ DHR+I G +   FL T  +++E+P  L L
Sbjct: 181 DRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  145 bits (368), Expect = 9e-42
 Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 15/202 (7%)

Query: 277 SLSVPTFRVGYPIITDALD--ALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGK 334
           S++  T+       T  LD  A  + VK              A  +  HP    + KDG+
Sbjct: 23  SVAQCTYN-----QTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGE 77

Query: 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR-SKQLQPHEYNS 393
              ++ +++    V          L      D       + + V     +    P  +  
Sbjct: 78  LVIWD-SVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIE 136

Query: 394 GTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHR 453
             F +S         FD  +         V                 K  M + +   H 
Sbjct: 137 NMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQG------DKVLMPLAIQVHHA 190

Query: 454 IIYGADLAAFLQTFSKIVENPE 475
           +  G  +   L    +  +  +
Sbjct: 191 VCDGFHVGRMLNELQQYCDEWQ 212

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  144 bits (364), Expect = 3e-41
 Identities = 22/187 (11%), Positives = 55/187 (29%), Gaps = 7/187 (3%)

Query: 290 ITDALD--ALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA 347
           +T  +D   L + +         ++    A A+ Q   +  +           +++    
Sbjct: 30  LTSKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAI-KDDELIVWDSVDPQFT 88

Query: 348 VAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVD 407
           V          L      D+      +  ++E+ +S      +  +    L N+      
Sbjct: 89  VFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHL-NISALPWV 147

Query: 408 RFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTF 467
            FD+                P +        G +  + ++V   H +  G  +A F+   
Sbjct: 148 NFDSFNLNVANFT---DYFAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRL 204

Query: 468 SKIVENP 474
            ++  + 
Sbjct: 205 QELCNSK 211

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  139 bits (351), Expect = 6e-39
 Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 14/248 (5%)

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDALY 298
           A  KPA             T    + ++ A++K M+ S  + P   +        L A  
Sbjct: 1   AAAKPATTEGEF-----PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHR 55

Query: 299 EKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAIN 351
           +K K         +T    + KA   AL ++PV+N S  D  +        NI +A   +
Sbjct: 56  KKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTD 115

Query: 352 GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411
            GL+ PV++ AD+  ++ L+Q+  EL EKAR  +L P E    + T++N+G  G   F  
Sbjct: 116 RGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTP 175

Query: 412 ILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIV 471
           ++   + AI+ +G      +   DG       + ++++ DHR+I GA     L    +++
Sbjct: 176 VINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLL 234

Query: 472 ENPESLTL 479
            +PE L +
Sbjct: 235 SDPELLLM 242

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  126 bits (318), Expect = 3e-34
 Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 9/229 (3%)

Query: 259 TVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK------GVTMTAL 311
             VP T +    + N+  S L+VP            L+A     K         +T+  L
Sbjct: 16  EEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPL 75

Query: 312 LAKAAAMALVQHPVVNASC-KDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370
           L KA A  L + P  N+S    G++      ++I  AV    GL+ PV+++ D+  L  L
Sbjct: 76  LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135

Query: 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTV 430
           + +  EL EKARSK+L         FT+S+LG  G   F  I+   + AI+ V  +    
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQP 195

Query: 431 VADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479
           V D    F  +  + ++++ D R+I GA  A F +    ++ +  ++ L
Sbjct: 196 VWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 88.3 bits (219), Expect = 3e-22
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I +P L  ++ +  + +W K  GD + + E +V +E+DK  ++V    DGIL A++  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63

Query: 120 GESAPVGAAIGILAE 134
           G +      +G L E
Sbjct: 64  GTTVTSRQILGRLRE 78

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (218), Expect = 7e-22
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 66

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASA 149
           G    P+G  + I+ E EA+++       + 
Sbjct: 67  GTRDVPLGTPLCIIVEKEADISAFADYRPTE 97

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (211), Expect = 4e-21
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
            ++ +  +  +   + E  +  W   EGD +S+ +S+  V+SDKA + + + YDG++  +
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 116 VVPEGESAPVGAAIGILAETEAE 138
                + A VG  +  + ETEA 
Sbjct: 62  YYNLDDIAYVGKPLVDI-ETEAL 83

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 83.3 bits (206), Expect = 2e-20
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I  P    ++ +G + +W K  G+ + + E +V +E+DK  M+V    DG++A IV  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62

Query: 120 GESAPVGAAIGILAE 134
           G++   G  +G L E
Sbjct: 63  GDTVLSGELLGKLTE 77

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   + EG+IV W    GD +++ + +  V++DKA +++ +   G +  I+VPE
Sbjct: 3   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62

Query: 120 GESAPVGAAIGILAE 134
           G  A VG  +  L  
Sbjct: 63  GTVATVGQTLITLDA 77

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 64.8 bits (158), Expect = 6e-14
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E+ +P +        I++   + GD ++  ++++ +E+DKA MDV     G++  + V  
Sbjct: 4   ELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62

Query: 120 GESAPVGAAIGILAETEAE 138
           G+    G  I ++ E E  
Sbjct: 63  GDKISEGGLIVVV-EAEGT 80

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           ++E+ +P +     E ++   +   GD ++  +S++ VE DKA M+V   + G++  + V
Sbjct: 2   VKEVNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59

Query: 118 PEGESAPVGAAIGILAETEAE 138
             G+    G+ I I  E E  
Sbjct: 60  NVGDKVKTGSLIMIF-EVEGA 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.4 bits (149), Expect = 9e-13
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 61  IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120
           I +P +     +G+++  +   GD++   + +VV+ES KA M+V +   G++ ++ V  G
Sbjct: 4   IRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG 60

Query: 121 ESAPVGAAIGILAETEA 137
           +    G AI  L     
Sbjct: 61  DKLKEGDAIIELEPAAG 77

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           + +A P  +K  ++  VDI  V GTG  GR+  ED++  
Sbjct: 1   RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAF 39

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 51.8 bits (125), Expect = 9e-10
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           +P  ++LL +H +D +++ GTG  GR+T EDVEK 
Sbjct: 2   SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKH 36

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 50.7 bits (121), Expect = 5e-09
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 73  GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132
           G +   +  EGD +  G++V+V+E+ K + ++    DG +  ++V E ++   G  +  +
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.89
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.87
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.87
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.85
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.83
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.65
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.54
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.52
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.47
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.21
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.14
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	96.96
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.49
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	95.5
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	94.91
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	94.67
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	94.63
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	94.23
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	93.29
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	92.93
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	92.07
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	91.49
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	89.79
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	89.11
d1l5aa1	174	VibH {Vibrio cholerae [TaxId: 666]}	88.27
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	88.02
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	87.42
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	87.06
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	86.4
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	85.5
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	84.85
d2tpta3	105	Thymidine phosphorylase {Escherichia coli [TaxId:	83.92
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	82.66
d1qapa2	122	Quinolinic acid phosphoribosyltransferase (Nicotin	81.79
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	81.33
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	80.7

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-57  Score=435.21  Aligned_cols=220  Identities=30%  Similarity=0.447  Sum_probs=211.1

Q ss_pred             CceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCcccccc
Q 011684          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNAS  329 (479)
Q Consensus       258 ~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~  329 (479)
                      ++++|++++||+|+++|.+| +++|||+++.+||+|+|+++|+++++       .++|+++|++||+++||.+||+||++
T Consensus         4 ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na~   83 (233)
T d1scza_           4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             CcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhheE
Confidence            56789999999999999999 79999999999999999999987643       27999999999999999999999999


Q ss_pred             ccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccce
Q 011684          330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (479)
Q Consensus       330 ~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~f  409 (479)
                      |+ ++++++++++|||+||++++||++|||++++++++.||+++++++.+++|+|+|+++|+.||||+|||+|++|+++|
T Consensus        84 ~~-~~~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~  162 (233)
T d1scza_          84 ID-GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS  162 (233)
T ss_dssp             EE-TTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred             Ec-CCeEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceee
Confidence            96 56999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       410 tpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +||+||||++||++|+++++|++. +|+++++++|+|||+||||++||+++|+||++|+++||||+.||+
T Consensus       163 tpii~ppq~aIl~vG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll  231 (233)
T d1scza_         163 TPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL  231 (233)
T ss_dssp             CCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             eeecCCCCceEEecccceeecccc-CCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhh
Confidence            999999999999999999999986 799999999999999999999999999999999999999998874

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=5.2e-56  Score=429.03  Aligned_cols=222  Identities=28%  Similarity=0.365  Sum_probs=212.0

Q ss_pred             CCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCcccccc
Q 011684          257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNAS  329 (479)
Q Consensus       257 ~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~  329 (479)
                      ..+++|++++||+||++|.+| +++|||+++.++|+|+|+++|+.++.      .++|+++|++||++.||.+||.+|++
T Consensus        14 ~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns~   93 (243)
T d1dpba_          14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS   93 (243)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred             CcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhhhc
Confidence            346799999999999999999 79999999999999999999987642      27999999999999999999999999


Q ss_pred             ccCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccc
Q 011684          330 CKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR  408 (479)
Q Consensus       330 ~~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~  408 (479)
                      |.++ ..+++++++|+|+||++++||++|||++++++++.+|+++++++.+++|+|+|+++|++||||+|||+|+||+++
T Consensus        94 ~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~~~  173 (243)
T d1dpba_          94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA  173 (243)
T ss_dssp             ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred             cccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCcccee
Confidence            9754 578899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          409 FDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       409 ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      |+||+||||++||++|+++++|+++ +|++++|++|+|||+||||++||+++|+||++|+++||||+.|||
T Consensus       174 ~tpiInppq~aIlgvG~i~~~pv~~-~~~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P~~lll  243 (243)
T d1dpba_         174 FTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             CCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             EEeeeccccceeeecccceeeEEEE-CCEEEEEEEEEEEEEeecccccHHHHHHHHHHHHHHHhCHHHHhC
Confidence            9999999999999999999999997 789999999999999999999999999999999999999999986

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.1e-56  Score=431.08  Aligned_cols=221  Identities=27%  Similarity=0.408  Sum_probs=211.3

Q ss_pred             CceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCccccccc
Q 011684          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC  330 (479)
Q Consensus       258 ~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~  330 (479)
                      ++++|+++|||+|+++|.+| +++|||+++.++|+|+|+++|+++|+      .++|+++|++||+++||++||.+|++|
T Consensus        14 ~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g~klT~~~~likA~a~AL~~~P~~Na~~   93 (242)
T d1b5sa_          14 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI   93 (242)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSCCB
T ss_pred             ceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcccccchhhHHHHHHHHHHHHhhhhheEE
Confidence            55689999999999999999 68999999999999999999988752      278999999999999999999999999


Q ss_pred             cCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccce
Q 011684          331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (479)
Q Consensus       331 ~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~f  409 (479)
                      +++ +.+++++++|+|++|+.++||++|||++++++++.+|+++++++.+++|+|+|.++|+.||||+|||+|++|+++|
T Consensus        94 ~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~~f  173 (242)
T d1b5sa_          94 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF  173 (242)
T ss_dssp             CTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCSCC
T ss_pred             cCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCccce
Confidence            754 5788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL  479 (479)
Q Consensus       410 tpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~  479 (479)
                      +||+++||++||++|+++++++++ ||++++|++|+|+|+||||++||+++++||++|+++||||+.||+
T Consensus       174 tpii~~pq~ail~vG~i~~~pv~~-dg~i~~r~~m~lslt~DHRviDGa~aa~Fl~~l~~~lE~P~~lll  242 (242)
T d1b5sa_         174 TPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM  242 (242)
T ss_dssp             CCCCCTTCCEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEECTTTSCSHHHHHHHHHHHHHHHCGGGTTC
T ss_pred             ecccccccceEEeccceEEEEEEE-CCeEEEEEEEEEEEEEEcchhChHHHHHHHHHHHHHHhCHHHHhC
Confidence            999999999999999999999986 899999999999999999999999999999999999999999986

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-42  Score=325.84  Aligned_cols=204  Identities=13%  Similarity=0.112  Sum_probs=178.5

Q ss_pred             Cceeccchh-hHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCee
Q 011684          258 STVVPFTTM-QAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSF  336 (479)
Q Consensus       258 ~~~~p~s~~-r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i  336 (479)
                      ++.+.++.- ||..-.. -+....|||+++++||+|+|.+++|+   +|+||+++++||+++||++||+||++|.+ +++
T Consensus         4 ~k~ID~~~W~R~~~f~~-f~~~~~P~f~it~~vDvT~l~~~~K~---~~~sf~~~~~~av~~Al~~~P~~n~~~~~-~~i   78 (214)
T d1q23a_           4 YTTVDISQWHRKEHFEA-FQSVAQCTYNQTVQLDITAFLKTVKK---NKHKFYPAFIHILARLMNAHPEFRMAMKD-GEL   78 (214)
T ss_dssp             EEECCGGGCTTHHHHHH-HTTTTCEEEEEEEEEECHHHHHHHHH---TTCCHHHHHHHHHHHHHTTCGGGSEEEET-TEE
T ss_pred             ceEeccccCcCHHHHHH-HhCCCCCeEEEEEEEcHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhChHhheEEcC-Cce
Confidence            455666664 4444333 34578999999999999999887765   48999999999999999999999999974 599


Q ss_pred             EEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCC-CCCCCCCCCeEEEeecCCCCccceeecCCC
Q 011684          337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQ-LQPHEYNSGTFTLSNLGMFGVDRFDAILPP  415 (479)
Q Consensus       337 ~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~-l~~~d~~~~tftISnlg~~G~~~ftpii~~  415 (479)
                      ++|+++|+|+||++++|+++|++++++++++.+|++++.++++++++++ +.++++.++||+|||+||+|+++++..++.
T Consensus        79 ~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~~~~~~~  158 (214)
T d1q23a_          79 VIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVAN  158 (214)
T ss_dssp             EEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEEEEEESC
T ss_pred             eEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCccCCCCC
Confidence            9999999999999999999999999999999999999999999888765 889999999999999999999998765544


Q ss_pred             CC---ceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCc
Q 011684          416 GQ---GAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPE  475 (479)
Q Consensus       416 ~~---~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~  475 (479)
                      +.   ++++++|++.++     ||    |.+|||||++|||++||+|+|+||+.|+++||+..
T Consensus       159 ~~~~~vpii~~Gk~~~~-----~~----r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le~~~  212 (214)
T d1q23a_         159 MDNFFAPVFTMGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ  212 (214)
T ss_dssp             CTTCCSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CccceeeEEEecceEEE-----CC----EEEEEEEEEecccccchHHHHHHHHHHHHHHhhcc
Confidence            43   579999999875     77    66899999999999999999999999999999753

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-40  Score=312.36  Aligned_cols=199  Identities=12%  Similarity=0.125  Sum_probs=169.1

Q ss_pred             eccch-hhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEc
Q 011684          261 VPFTT-MQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYN  339 (479)
Q Consensus       261 ~p~s~-~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~  339 (479)
                      +.+.. -||...... ...+.|||+++++||+|+|.+++|   ++|+||+++++||+++||++||+||++|.+ +++++|
T Consensus         6 id~~~w~Rk~~f~~f-~~~~~P~~~~t~~vDvT~l~~~~K---~~~~sf~~~~~~a~~~Al~~~P~~n~~~~~-~~i~~~   80 (213)
T d3claa_           6 FDVKNWVRREHFEFY-RHRLPCGFSLTSKIDITTLKKSLD---DSAYKFYPVMIYLIAQAVNQFDELRMAIKD-DELIVW   80 (213)
T ss_dssp             CCCTTCTTHHHHHHH-HHTSCCEEEEEEEEECHHHHHHHH---TSSCCHHHHHHHHHHHHHTTCGGGSEEEET-TEEEEE
T ss_pred             eCcccCccHHHHHHH-hCCCCCEEEEEEEEeHHHHHHHHH---HcCCCeeHHHHHHHHHHHHhChHhhhEecc-CeEEEe
Confidence            33444 355555543 347899999999999999966654   458999999999999999999999999974 699999


Q ss_pred             CcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCC-CCCCCCCC-CeEEEeecCCCCccceeecCCCCC
Q 011684          340 ANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQ-LQPHEYNS-GTFTLSNLGMFGVDRFDAILPPGQ  417 (479)
Q Consensus       340 ~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~-l~~~d~~~-~tftISnlg~~G~~~ftpii~~~~  417 (479)
                      +++|+|+||++++|+++|+|++++++++.+|+++++++++++|+++ +.+++..+ ++|++|++||++++   +|+++++
T Consensus        81 ~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~~~~~~~is~l~~~~Ft---~i~~~~~  157 (213)
T d3claa_          81 DSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFD---SFNLNVA  157 (213)
T ss_dssp             SCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCS---CCCCCCS
T ss_pred             cccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccccCCCcEEEeeccCceEee---cccCCcc
Confidence            9999999999999999999999999999999999999999999876 55655443 68888888887654   5555544


Q ss_pred             c------eEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcc
Q 011684          418 G------AIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPES  476 (479)
Q Consensus       418 ~------ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~  476 (479)
                      .      +++.+|++..+     +|    |.+|||+|+||||++||+|+|+||+.|+++||+|.+
T Consensus       158 ~~~~~~~Pii~~Gk~~~~-----~~----r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le~p~k  213 (213)
T d3claa_         158 NFTDYFAPIITMAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK  213 (213)
T ss_dssp             CCTTCCSCEEEEECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             cCccccccEEecCccEEE-----CC----EEEEEEEEEecccccccHHHHHHHHHHHHHHhCcCC
Confidence            3      59999999876     67    678999999999999999999999999999999964

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=174.70  Aligned_cols=85  Identities=39%  Similarity=0.677  Sum_probs=80.4

Q ss_pred             cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-eecCCCeEEEEe
Q 011684           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILA  133 (479)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~-~v~~G~~l~~i~  133 (479)
                      ++.+++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++||.|.
T Consensus         2 ~p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1           2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             CCCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            5678999999999999999999999999999999999999999999999999999999999999997 699999999998


Q ss_pred             cChhhH
Q 011684          134 ETEAEV  139 (479)
Q Consensus       134 ~~~~~~  139 (479)
                      +.+++.
T Consensus        82 ~~~~~~   87 (102)
T d1y8ob1          82 EKEADI   87 (102)
T ss_dssp             SSGGGG
T ss_pred             cCCccc
Confidence            776654

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.87  E-value=8.2e-23  Score=162.00  Aligned_cols=77  Identities=31%  Similarity=0.583  Sum_probs=74.9

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|++|++|+.|.+.
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999764

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-22  Score=162.73  Aligned_cols=81  Identities=22%  Similarity=0.395  Sum_probs=77.4

Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      +.+++|+||+||++|++|+|++|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|++|++|+.|+.+
T Consensus         2 ~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~   81 (87)
T d1k8ma_           2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (87)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             CccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             h
Q 011684          136 E  136 (479)
Q Consensus       136 ~  136 (479)
                      .
T Consensus        82 ~   82 (87)
T d1k8ma_          82 A   82 (87)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=6.4e-23  Score=162.93  Aligned_cols=77  Identities=30%  Similarity=0.531  Sum_probs=74.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~  135 (479)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++||.|++|++|+.|+.+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999998654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=9.2e-23  Score=161.92  Aligned_cols=76  Identities=30%  Similarity=0.577  Sum_probs=74.1

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~  134 (479)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|++|++|+.|++
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999964

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.6e-20  Score=148.02  Aligned_cols=78  Identities=24%  Similarity=0.443  Sum_probs=73.5

Q ss_pred             eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ++.+|+||++|+  ++++|++|++++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|++|++|+.|+.++
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            468999999986  489999999999999999999999999999999999999999999999999999999999997543

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.81  E-value=4.5e-21  Score=152.81  Aligned_cols=78  Identities=22%  Similarity=0.386  Sum_probs=74.2

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +++|+||+|| ++.+++|++|++++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|++|++|+.|+.++
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG   79 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            5789999999 58999999999999999999999999999999999999999999999999999999999999997543

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=2.4e-19  Score=142.03  Aligned_cols=75  Identities=27%  Similarity=0.449  Sum_probs=70.9

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+||++|.   +|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|++|++|+.|+..+
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            3589999994   89999999999999999999999999999999999999999999999999999999999997644

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.65  E-value=1.5e-16  Score=125.04  Aligned_cols=60  Identities=23%  Similarity=0.446  Sum_probs=59.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i  132 (479)
                      |+|++|+|++||+|++||+||+||+||++++|+||++|+|.++++++|+.|..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999987

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.54  E-value=1.1e-15  Score=104.45  Aligned_cols=41  Identities=34%  Similarity=0.565  Sum_probs=39.1

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhc
Q 011684          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (479)
Q Consensus       185 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  225 (479)
                      ++++||+||+||+|+||||++|+|||++|||+++||++|++
T Consensus         1 rv~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i~   41 (42)
T d1w85i_           1 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   41 (42)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             CcccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHhC
Confidence            46899999999999999999999999999999999999975

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.2e-14  Score=114.50  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=55.8

Q ss_pred             EEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684           76 VSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (479)
Q Consensus        76 ~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~  133 (479)
                      .+++|++||+|++||+||.||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            3789999999999999999999999999999999999999999999999999999884

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1e-14  Score=98.24  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=36.4

Q ss_pred             cChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhc
Q 011684          188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (479)
Q Consensus       188 asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  225 (479)
                      .||+|||||+|+||||++|+|||++|||+++||++|+.
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~   38 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   38 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHc
Confidence            48999999999999999999999999999999999975

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=0.00024  Score=59.40  Aligned_cols=45  Identities=33%  Similarity=0.402  Sum_probs=38.6

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEec
Q 011684           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV  117 (479)
Q Consensus        73 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~  117 (479)
                      |.|+.+.. ++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~   80 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   80 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence            34444443 8999999999999999999999999999999988753

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.14  E-value=0.00029  Score=59.24  Aligned_cols=44  Identities=30%  Similarity=0.323  Sum_probs=37.9

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684           73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (479)
Q Consensus        73 g~i~~w~-v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~  116 (479)
                      |.|+.+. .++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            3444443 3899999999999999999999999999999998875

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.96  E-value=0.00013  Score=66.42  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=54.2

Q ss_pred             ecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecc------------------------------------------
Q 011684           62 FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDK------------------------------------------   99 (479)
Q Consensus        62 ~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K------------------------------------------   99 (479)
                      ..|.++     |.|.+|+|++||.|++||+|++|....                                          
T Consensus        18 V~s~v~-----G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~   92 (237)
T d1vf7a_          18 VRPQVN-----GIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAA   92 (237)
T ss_dssp             ECCSSC-----EEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             EEeecC-----EEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhh
Confidence            345566     999999999999999999999997542                                          


Q ss_pred             ---------------eeeEEEcCCCeEEEEEecCCCCeecCCCeEE
Q 011684          100 ---------------ADMDVETFYDGILAAIVVPEGESAPVGAAIG  130 (479)
Q Consensus       100 ---------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~  130 (479)
                                     ....|.||++|+|.++.+.+|+.+..|....
T Consensus        93 ~~~a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~  138 (237)
T d1vf7a_          93 YLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANA  138 (237)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSC
T ss_pred             cchhHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCccee
Confidence                           1567999999999999999999998887543

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.49  E-value=0.0015  Score=49.48  Aligned_cols=36  Identities=19%  Similarity=0.422  Sum_probs=32.8

Q ss_pred             eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      +-.|+||..|+|.++++++||.|..|++|+.++...
T Consensus         8 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K   43 (77)
T d1dcza_           8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred             CCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccC
Confidence            347999999999999999999999999999998654

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0088  Score=45.42  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=24.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~ve   96 (479)
                      ..|+|.+|++++||.|+.||+|++||
T Consensus        55 ~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          55 KSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            45999999999999999999999986

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.91  E-value=0.0094  Score=53.46  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             EEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        93 ~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ..|+..+ ..+|.|+.+|+|.+++|++|+.|..|++|+.|...+
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~   50 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPAT   50 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHH
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEehHH
Confidence            3566544 468999999999999999999999999999997654

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0077  Score=45.72  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      ..|+|.++++++||.|+.||+||.||++
T Consensus        50 ~~G~v~~i~v~~G~~V~~G~~l~~ie~e   77 (80)
T d1qjoa_          50 FAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             eeEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            4599999999999999999999999975

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.013  Score=45.16  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=27.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEecce
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKA  100 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~  100 (479)
                      ..|+|.++++++||.|+.|++|+.|+++..
T Consensus        54 ~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~   83 (87)
T d1k8ma_          54 YDGVIKKLYYNLDDIAYVGKPLVDIETEAL   83 (87)
T ss_dssp             SCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence            459999999999999999999999998754

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.23  E-value=0.023  Score=42.85  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             EEcC---CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          104 VETF---YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       104 v~ap---~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      |+.|   .+|+|.++++++||.|..|++|+.++...
T Consensus         4 i~~P~~g~~g~i~~~~v~~Gd~V~~gd~l~~iE~~K   39 (79)
T d1iyua_           4 IRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAK   39 (79)
T ss_dssp             EECCCCSSEEEEEEECCCTTCBCCSSSEEEEEECSS
T ss_pred             EECCCCCCCEEEEEEEecCCCEEecCceEEEEEecC
Confidence            4555   67999999999999999999999997654

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.29  E-value=0.026  Score=42.58  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=24.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684           71 TEGKIVSWIKSEGDVLSKGESVVVVES   97 (479)
Q Consensus        71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet   97 (479)
                      ..|+|.++++++||.|+.|++|+.|+.
T Consensus        51 ~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          51 ADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            459999999999999999999999974

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.063  Score=42.39  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=29.7

Q ss_pred             eEEEcC------CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          102 MDVETF------YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       102 ~~v~ap------~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      ++|.-|      ..|+|.++++++||.|..|++|+.|+.+.
T Consensus         6 iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK   46 (102)
T d1y8ob1           6 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDK   46 (102)
T ss_dssp             EEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             EEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCc
Confidence            455555      57999999999999999999999998654

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.07  E-value=0.052  Score=40.95  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=25.9

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .+|+|.++++++||.|..|++|+.++...
T Consensus        14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K   42 (81)
T d1gjxa_          14 ENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             SSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             cEEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            46889999999999999999999997654

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.49  E-value=0.058  Score=40.64  Aligned_cols=29  Identities=10%  Similarity=0.186  Sum_probs=26.4

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .+|+|.++++++||.|..|++|+.++...
T Consensus        14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K   42 (80)
T d1laba_          14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDK   42 (80)
T ss_dssp             CSEEEEECCCSSCCEECSSCCCEEEECSS
T ss_pred             eeEEEEEEEeCCCCEEeeCcCEEEEEccc
Confidence            46999999999999999999999998654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.027  Score=42.57  Aligned_cols=29  Identities=10%  Similarity=0.097  Sum_probs=26.1

Q ss_pred             CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus       108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      .+|+|.++++++||.|..|++|+.++...
T Consensus        15 ~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK   43 (80)
T d1pmra_          15 ADATVATWHKKPGDAVVRDEVLVEIETDK   43 (80)
T ss_dssp             SCEECCBCCCCTTCCBSSSCCBCBCCSSS
T ss_pred             cEEEEEEEEeCCCCEEcCCCEEEEEEcCc
Confidence            56999999999999999999999997544

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.11  E-value=0.31  Score=38.16  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             ceeeEEEcCCCeEEEEE-------------------------------ecCCCCeecCCCeEEEEecChh
Q 011684           99 KADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        99 K~~~~v~ap~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      |-..+|.|+.+|+|..|                               +.+.||.|..|++|++|....+
T Consensus         3 ~~~~~v~A~~~G~v~~id~~~iG~~~~~LGaGR~~~~D~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~   72 (103)
T d1brwa3           3 AYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP   72 (103)
T ss_dssp             SEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred             CeEEEEECCCCEEEEEEeHHHHHHHHHHhCCCcccccCccCcccceEEeccCCCEEcCCCeEEEEEcCCc
Confidence            44678999999999988                               5788999999999999975443

>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: NRPS condensation domain (amide synthase)
domain: VibH
species: Vibrio cholerae [TaxId: 666]

Probab=88.27  E-value=4.1  Score=33.51  Aligned_cols=27  Identities=26%  Similarity=0.365  Sum_probs=24.0

Q ss_pred             EEEEEecccccchHHHHHHHHHHHHHh
Q 011684          445 LVNVTADHRIIYGADLAAFLQTFSKIV  471 (479)
Q Consensus       445 ~lslt~DHRvvDG~~aa~Fl~~l~~~l  471 (479)
                      -+.+++||-++||.-...|+++|.+.-
T Consensus       119 ~l~~~~hHii~Dg~S~~~l~~el~~~Y  145 (174)
T d1l5aa1         119 LIYTRAHHIVLDGYGMMLFEQRLSQHY  145 (174)
T ss_dssp             EEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             EEeeecccEEEcHhHHHHHHHHHHHHH
Confidence            367899999999999999999998764

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.41  Score=40.14  Aligned_cols=58  Identities=22%  Similarity=0.374  Sum_probs=45.0

Q ss_pred             EEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE---------------------------------
Q 011684           73 GKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI---------------------------------  115 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i---------------------------------  115 (479)
                      |+++.+ -+.-|.|=.    |+-++.+=++   -.|.||++|+|..+                                 
T Consensus        10 G~vi~L-~~v~D~vFs~~~mG~GvAI~P~~---~~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLIHiGidTV~L~G~gF   85 (150)
T d2f3ga_          10 GEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGF   85 (150)
T ss_dssp             EEEECG-GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTE
T ss_pred             ceEEEc-ccCCChHHhcCCccCeEEEEeCC---CeEEeecCEEEEEECCCCCEEEEEeCCceEEEEEEccchhhcCCcce
Confidence            677663 366666543    7788877655   36899999999887                                 


Q ss_pred             --ecCCCCeecCCCeEEEEec
Q 011684          116 --VVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       116 --~~~~g~~v~~G~~l~~i~~  134 (479)
                        ++++||.|..|++|+++.-
T Consensus        86 ~~~v~~Gd~V~~G~~L~~~D~  106 (150)
T d2f3ga_          86 KRIAEEGQRVKVGDTVIEFDL  106 (150)
T ss_dssp             EECSCTTCEECTTCEEEEECH
T ss_pred             EEEecCCCEECCCCEEEEEcH
Confidence              7899999999999999953

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=87.42  E-value=0.45  Score=40.23  Aligned_cols=58  Identities=19%  Similarity=0.238  Sum_probs=46.8

Q ss_pred             EEEEEEEcCCCCee----cCCCeEEEEEecceeeEEEcCCCeEEEEE---------------------------------
Q 011684           73 GKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI---------------------------------  115 (479)
Q Consensus        73 g~i~~w~v~~Gd~V----~~g~~l~~vet~K~~~~v~ap~~G~v~~i---------------------------------  115 (479)
                      |+++.+ -+.-|.|    --|+-++.+=++   -.|.||++|+|..+                                 
T Consensus        18 G~vi~L-~~V~D~vFs~~~~G~G~aI~P~~---~~v~AP~~G~I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L~G~gF   93 (158)
T d1gpra_          18 GEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGF   93 (158)
T ss_dssp             EEEEEG-GGSSSHHHHTTSSCEEEEEEESS---CEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSCGGGTTTTE
T ss_pred             cEEEEh-hhCCChHhccCCccceEEEEEcC---CEEEEeeCeEEEEEcCCCCEEEEEeCCCeEEEEEEeecccccCCcce
Confidence            787774 4777766    457888877665   46999999999888                                 


Q ss_pred             --ecCCCCeecCCCeEEEEec
Q 011684          116 --VVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       116 --~~~~g~~v~~G~~l~~i~~  134 (479)
                        ++++||.|..|++|+.+.-
T Consensus        94 ~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          94 TSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             EECCCTTCEECTTCEEEEECH
T ss_pred             EEEEcCCCEEcCCCEEEEeCH
Confidence              7899999999999999953

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=87.06  E-value=0.095  Score=44.40  Aligned_cols=72  Identities=13%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             eeEEEecCCCCCCC--ceEEEEEEEcCCCCeecCCCeEEEEEecc---------eeeEEEcCCCeEEEEEecCCCCeecC
Q 011684           57 KIREIFMPALSSTM--TEGKIVSWIKSEGDVLSKGESVVVVESDK---------ADMDVETFYDGILAAIVVPEGESAPV  125 (479)
Q Consensus        57 ~~~~i~~P~l~~~~--~eg~i~~w~v~~Gd~V~~g~~l~~vet~K---------~~~~v~ap~~G~v~~i~~~~g~~v~~  125 (479)
                      +..+|.+- +|-+-  -+|+--+++|++||+|++||+|+++.-++         .-+-+.-....   .+.+.....|..
T Consensus        71 ~G~eiLIH-iGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~  146 (154)
T d2gpra_          71 SGVEILLH-IGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQ  146 (154)
T ss_dssp             TSCEEEEE-CSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECT
T ss_pred             CCCEEEEE-EcccccccCCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcC
Confidence            44566665 44432  26888999999999999999999996432         12222222221   223334457899


Q ss_pred             CCeEEEE
Q 011684          126 GAAIGIL  132 (479)
Q Consensus       126 G~~l~~i  132 (479)
                      |++|+.+
T Consensus       147 Gd~i~~i  153 (154)
T d2gpra_         147 GDVVAIL  153 (154)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEe
Confidence            9999876

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.52  Score=36.98  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             ceeeEEEcCCCeEEEEE-----------------------------ecCCCCeecCCCeEEEEecCh
Q 011684           99 KADMDVETFYDGILAAI-----------------------------VVPEGESAPVGAAIGILAETE  136 (479)
Q Consensus        99 K~~~~v~ap~~G~v~~i-----------------------------~~~~g~~v~~G~~l~~i~~~~  136 (479)
                      |-..+|.|+.+|+|.+|                             +.+.||.|..|++|++|....
T Consensus         3 ~~~~~i~A~~~G~V~~id~~~lG~~~~~LGaGR~~d~ID~~vGi~l~~k~Gd~V~~G~~l~~ih~~~   69 (105)
T d1uoua3           3 REQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG   69 (105)
T ss_dssp             SEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred             CeeEEEecCCCEEEEEEeHHHHHHHHHHhCCCCCCCccCccccEEEeecCCCEEcCCCeEEEEECCC
Confidence            45678899999999887                             578899999999999996544

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=85.50  E-value=0.56  Score=39.43  Aligned_cols=68  Identities=16%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             eeEEEecCCCCCCCceEEEEEEEcCCCCee----cCCCeEEEEEecceeeEEEcCCCeEEEEE-----------------
Q 011684           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI-----------------  115 (479)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V----~~g~~l~~vet~K~~~~v~ap~~G~v~~i-----------------  115 (479)
                      +..+|.-| +.     |+++.+ -+.-|.|    --|+-++..=++   -.|.||++|+|..+                 
T Consensus         6 K~~~i~aP-~~-----G~vi~l-~~v~D~vFs~k~~G~G~aI~P~~---~~v~AP~dG~I~~i~~T~HAigi~t~~G~ei   75 (154)
T d2gpra_           6 KNLKVLAP-CD-----GTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEI   75 (154)
T ss_dssp             CCEEEECS-SS-----EEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEE
T ss_pred             cceEEEec-CC-----ceEEEc-ccCCChhhccCCCcCeEEEEecC---CEEEEecCeEEEEECCCCcEEEEEeCCCCEE
Confidence            34566666 33     788774 4666666    457888877664   46899999999877                 


Q ss_pred             ------------------ecCCCCeecCCCeEEEEec
Q 011684          116 ------------------VVPEGESAPVGAAIGILAE  134 (479)
Q Consensus       116 ------------------~~~~g~~v~~G~~l~~i~~  134 (479)
                                        ++++||.|..|++|+.+.-
T Consensus        76 LIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~  112 (154)
T d2gpra_          76 LLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             EEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             EEEEcccccccCCceeEEEecCCCEEcCCCEEEEEcH
Confidence                              7899999999999999953

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.85  E-value=0.33  Score=38.77  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe
Q 011684           73 GKIVSWIKSEGDVLSKGESVVVVES   97 (479)
Q Consensus        73 g~i~~w~v~~Gd~V~~g~~l~~vet   97 (479)
                      +--+.|++++||.|++||.|++|+-
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~G   94 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLEA   94 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEec
Confidence            3446899999999999999999984

>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=83.92  E-value=0.6  Score=36.58  Aligned_cols=39  Identities=8%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             ceeeEEEcCCCeEEEEE-------------------------------ecCCCCeecCCCeEEEEecChh
Q 011684           99 KADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETEA  137 (479)
Q Consensus        99 K~~~~v~ap~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~~  137 (479)
                      ....+|.|+.+|+|.+|                               +++.||.|..|++|++|....+
T Consensus         3 ~~~~~I~A~~~G~v~~ida~~iG~a~~~LGaGR~~~~D~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~   72 (105)
T d2tpta3           3 MLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE   72 (105)
T ss_dssp             SEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred             ceeEEEecCCCEEEEEEeHHHHHHHHHHhCCCcCcCCCCCCCcccEEEEecCCCEEcCCCeEEEEECCCH
Confidence            35678999999999988                               6788999999999999986543

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.66  E-value=0.37  Score=37.91  Aligned_cols=29  Identities=21%  Similarity=0.276  Sum_probs=24.1

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           70 MTEGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        70 ~~eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      ++.+.=+.++++.||.|++||+||+|=++
T Consensus        40 ID~~vGi~l~~k~Gd~V~~G~~l~~ih~~   68 (105)
T d1uoua3          40 LRLGVGAELLVDVGQRLRRGTPWLRVHRD   68 (105)
T ss_dssp             CCSSCEEEECSCTTCEECTTCEEEEEEES
T ss_pred             cCccccEEEeecCCCEEcCCCeEEEEECC
Confidence            44455579999999999999999998654

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.79  E-value=0.42  Score=38.54  Aligned_cols=24  Identities=17%  Similarity=0.493  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEe
Q 011684           74 KIVSWIKSEGDVLSKGESVVVVES   97 (479)
Q Consensus        74 ~i~~w~v~~Gd~V~~g~~l~~vet   97 (479)
                      .-++|++++||.|++|++|++|+-
T Consensus        78 i~~~~~~~DG~~v~~G~~i~~i~G  101 (122)
T d1qapa2          78 VRLTWHVDDGDAIHANQTVFELQG  101 (122)
T ss_dssp             SEEEESCCTTCEECTTCEEEEEEE
T ss_pred             eEEEecccCccEEecCceEEEEEE
Confidence            346899999999999999999984

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=81.33  E-value=0.32  Score=41.20  Aligned_cols=41  Identities=27%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             eeEEEecCCCCCC-Cc-eEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684           57 KIREIFMPALSST-MT-EGKIVSWIKSEGDVLSKGESVVVVESD   98 (479)
Q Consensus        57 ~~~~i~~P~l~~~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vet~   98 (479)
                      +..+|.+- +|-+ .. +|+--+++|++||+|++||+|+++--+
T Consensus        73 ~G~evLiH-iGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~  115 (158)
T d1gpra_          73 GGREILIH-FGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLD  115 (158)
T ss_dssp             TSCEEEEE-CSBSCGGGTTTTEEECCCTTCEECTTCEEEEECHH
T ss_pred             CCeEEEEE-EeecccccCCcceEEEEcCCCEEcCCCEEEEeCHH
Confidence            34566555 4433 22 677889999999999999999998753

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.70  E-value=0.53  Score=36.77  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             CCceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684           69 TMTEGKIVSWIKSEGDVLSKGESVVVVESDK   99 (479)
Q Consensus        69 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K   99 (479)
                      .++.+.=+.++++.||.|++||+|+.|=+++
T Consensus        41 ~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          41 VIDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             CCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             ccCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            3444556799999999999999999987654