Citrus Sinensis ID: 011697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSLSGTSGQGMVGGRK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqrygvqfpkrspdaapiftppvshptlgqaqasygmpsnssrrldeTMATEVETLSFSSLDSMRDVMELLSDMLQavnpsdreavkDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHdaiasglpiptevtnlspkpneacaasslkstdagdssptpngnhpapvaSVTRALIDEEEEEEDDFALLARrhsmpkpgpsqntsaetggalvpvsnsnatsslpaatpsnalalpdppapvrtskeqDIIDLLSITlsttstsphtphtppissqstqqvpapsstqgnpyaseaypgnqgqvpynnyvapwaqpqsqplpqsqpqfqpgvqpqyphyssayppppwaptpgyfnnqnnlagannmfsstranmptsyrplqpnnsfpirgsngsvmhgdppassgpgnpvsttaqkpfipsyrlfedlNVLGSADARlkmtsssspslsgtsgqgmvggrk
Flexible Loop (DISEMBL)
mqrygvqfpkrspdaapIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQavnpsdreavkdEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGdssptpngnhpapVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKmtsssspslsgtsgqgmvggrk
Low Complexity Region (SEG)
MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMltttgdeellgrglelNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIdeeeeeeddFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEqdiidllsitlsttstsphtphtppissqstqqVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAqpqsqplpqsqpqfqpGVqpqyphyssayppppwaptpgyFnnqnnlagannMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMtsssspslsgtsgQGMVGGRK
Disordered region (IsUnstruct)
**************************************************************************************KDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPI***********************************************************************************************************************************************************************************NYV*************************************************************************************************************FIPSYRLFEDLNVL******************************
Disordered Region (DISOPRED)
MQRYGVQFPKRSPDAAPIF***********************************************VMELLSDM*****************VDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKH*******************************************************************************************************************************************************************************************************************************************************************************************************************FEDL*********************************
Disordered Region (DISEMBL)
**********RSPDAAPIFTPPVSHPTLGQ****************ETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPK************************NHPAPVASVTRALIDEEEEEEDDFALLARRHS*************TGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLST******************************PYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMH************VSTTAQKPFIPSYRLFEDLNVLGSADARL***********************
Disordered Region (DISPRO)
*****V*F****PDAAP*************************************TLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG******************************************************************************************************************************D*L***************************************SEA*****GQVPYNN*VAPWA*************************SSAYPPPPWAP******************************************************************QKPFIPSYRLFEDLNVLGS****************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSLSGTSGQGMVGGRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q68FJ8	507	TOM1-like protein 2 OS=Xe	N/A	no	0.283	0.268	0.246	8e-05

>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 26/162 (16%)

Query: 1   MQRYGVQFPKRSPDA-APIFTPPVS----------HPTLGQAQASYGMPSNSS------- 42
           ++R G++FP    DA +PI TP  S          H +  Q + S+   SNS        
Sbjct: 144 LKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTSTPYT 203

Query: 43  ------RRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDL 94
                   +   ++   E +    S LD +R  ++++S+ML  + P    A   E++ DL
Sbjct: 204 APGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLELLQDL 263

Query: 95  VSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 136
              CR+ Q++++++++   +EE+    L +ND L N+  +++
Sbjct: 264 NRTCRTMQERIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 305

Probable role in protein transport.
Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
225439610	625	PREDICTED: uncharacterized protein LOC10	0.979	0.750	0.602	1e-133
297735580	592	unnamed protein product [Vitis vinifera]	0.979	0.792	0.602	1e-133
255586353	734	protein transporter, putative [Ricinus c	0.682	0.445	0.675	1e-109
449439821	689	PREDICTED: target of Myb protein 1-like	0.703	0.489	0.650	1e-100
449483742	591	PREDICTED: uncharacterized protein LOC10	0.703	0.570	0.650	1e-100
224087835	635	predicted protein [Populus trichocarpa]	0.657	0.496	0.617	2e-96
224139312	654	predicted protein [Populus trichocarpa]	0.659	0.483	0.647	2e-94
357506521	731	Class E vacuolar protein-sorting machine	0.693	0.454	0.570	5e-82
356566755	740	PREDICTED: ADP-ribosylation factor-bindi	0.686	0.444	0.560	1e-81
356530201	529	PREDICTED: TOM1-like protein 2-like [Gly	0.569	0.516	0.601	2e-74

>gi|225439610|ref|XP_002267147.1| PREDICTED: uncharacterized protein LOC100267076 [Vitis vinifera]

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 297/493 (60%), Positives = 363/493 (73%), Gaps = 24/493 (4%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GV+FPKRS DAAPIFTPPV+HP +   Q+ YGMPSNS+RRLDE MA+E+E++S +S
Sbjct: 143 LRRAGVEFPKRSLDAAPIFTPPVTHPIVRHPQSGYGMPSNSTRRLDEAMASEMESVSLAS 202

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           +DSM++VM+LL+DMLQAV+PSD +AVKDEVIVDLV++CR+NQK+LMQMLT+TGDEELLGR
Sbjct: 203 MDSMQEVMQLLADMLQAVDPSDHQAVKDEVIVDLVNQCRANQKRLMQMLTSTGDEELLGR 262

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNH 180
           GLELND LQ+LLAKHDAI SG P+P  VTN SP+  +   +SSLK  +  ++ P  N + 
Sbjct: 263 GLELNDGLQSLLAKHDAILSGSPLPNLVTNFSPQQPD-IGSSSLKPAELKETLPRSNADP 321

Query: 181 PAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSL 240
             PVA+VT+   +EEE+EEDDFA LARRHS  +  PSQ+TS  T        ++N T+S+
Sbjct: 322 STPVAAVTKVQAEEEEDEEDDFAQLARRHSKTRATPSQSTSTGT------SDSTNITTSI 375

Query: 241 PAAT----PSNALA-LPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQ 295
             A+    PSNALA +P  PAPV+T+KEQD+IDLLS+TLST STS  T      S+ S Q
Sbjct: 376 TPASSTSDPSNALAVVPVSPAPVKTTKEQDMIDLLSLTLSTISTSHETQPPSSASNPSLQ 435

Query: 296 QVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWA---QPQSQPLPQSQPQFQPGVQPQY 352
           QVP  ++TQ  PY+S AY GNQGQVPY+NYV PWA   Q QSQP PQ QPQ Q   + QY
Sbjct: 436 QVPVSTTTQEYPYSSAAYSGNQGQVPYSNYVVPWAQPQQTQSQPQPQPQPQPQIQPRTQY 495

Query: 353 PHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSY------RPLQPNNSFPI 406
           P YS  YPPPPWA TPGY N   N + +  M+S+ + N  TSY      RPLQ  NSF  
Sbjct: 496 PQYSYGYPPPPWAATPGYSN--QNPSSSGYMYSTLQVNTNTSYMPMQGPRPLQQYNSFSS 553

Query: 407 RGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSL 466
           +G+NG  M+GD     GP NPV  +  KPFIPSYRLFEDLNVLG+ D RLKMTSS+SPSL
Sbjct: 554 KGNNGLAMNGDGRV-PGPRNPVPASGNKPFIPSYRLFEDLNVLGNTDGRLKMTSSASPSL 612

Query: 467 SGTSGQGMVGGRK 479
           SGTS QGMVGGRK
Sbjct: 613 SGTSSQGMVGGRK 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735580|emb|CBI18074.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 297/493 (60%), Positives = 363/493 (73%), Gaps = 24/493 (4%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GV+FPKRS DAAPIFTPPV+HP +   Q+ YGMPSNS+RRLDE MA+E+E++S +S
Sbjct: 110 LRRAGVEFPKRSLDAAPIFTPPVTHPIVRHPQSGYGMPSNSTRRLDEAMASEMESVSLAS 169

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           +DSM++VM+LL+DMLQAV+PSD +AVKDEVIVDLV++CR+NQK+LMQMLT+TGDEELLGR
Sbjct: 170 MDSMQEVMQLLADMLQAVDPSDHQAVKDEVIVDLVNQCRANQKRLMQMLTSTGDEELLGR 229

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNH 180
           GLELND LQ+LLAKHDAI SG P+P  VTN SP+  +   +SSLK  +  ++ P  N + 
Sbjct: 230 GLELNDGLQSLLAKHDAILSGSPLPNLVTNFSPQQPD-IGSSSLKPAELKETLPRSNADP 288

Query: 181 PAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSL 240
             PVA+VT+   +EEE+EEDDFA LARRHS  +  PSQ+TS  T        ++N T+S+
Sbjct: 289 STPVAAVTKVQAEEEEDEEDDFAQLARRHSKTRATPSQSTSTGT------SDSTNITTSI 342

Query: 241 PAAT----PSNALA-LPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQ 295
             A+    PSNALA +P  PAPV+T+KEQD+IDLLS+TLST STS  T      S+ S Q
Sbjct: 343 TPASSTSDPSNALAVVPVSPAPVKTTKEQDMIDLLSLTLSTISTSHETQPPSSASNPSLQ 402

Query: 296 QVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWA---QPQSQPLPQSQPQFQPGVQPQY 352
           QVP  ++TQ  PY+S AY GNQGQVPY+NYV PWA   Q QSQP PQ QPQ Q   + QY
Sbjct: 403 QVPVSTTTQEYPYSSAAYSGNQGQVPYSNYVVPWAQPQQTQSQPQPQPQPQPQIQPRTQY 462

Query: 353 PHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSY------RPLQPNNSFPI 406
           P YS  YPPPPWA TPGY N   N + +  M+S+ + N  TSY      RPLQ  NSF  
Sbjct: 463 PQYSYGYPPPPWAATPGYSN--QNPSSSGYMYSTLQVNTNTSYMPMQGPRPLQQYNSFSS 520

Query: 407 RGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSL 466
           +G+NG  M+GD     GP NPV  +  KPFIPSYRLFEDLNVLG+ D RLKMTSS+SPSL
Sbjct: 521 KGNNGLAMNGDGRV-PGPRNPVPASGNKPFIPSYRLFEDLNVLGNTDGRLKMTSSASPSL 579

Query: 467 SGTSGQGMVGGRK 479
           SGTS QGMVGGRK
Sbjct: 580 SGTSSQGMVGGRK 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586353|ref|XP_002533826.1| protein transporter, putative [Ricinus communis] gi|223526243|gb|EEF28561.1| protein transporter, putative [Ricinus communis]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/342 (67%), Positives = 263/342 (76%), Gaps = 15/342 (4%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GV+FP+RS DAAPIFTPPVSH T+  AQA YGMPSNSSRRLDETMATE+E LS  S
Sbjct: 137 LRRSGVEFPQRSMDAAPIFTPPVSHLTMRHAQAGYGMPSNSSRRLDETMATEIEGLSLPS 196

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           LDSMR+VMELL DMLQAVNP DR+AVKDE+IVDLV+RCRSNQKKLMQMLTTTGDEELLG+
Sbjct: 197 LDSMRNVMELLGDMLQAVNPDDRDAVKDEIIVDLVNRCRSNQKKLMQMLTTTGDEELLGQ 256

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNH 180
           GLELND LQNLLAKHD IASG P+PT+V NLS KP+E C +SS+K  +  D   +P+ N 
Sbjct: 257 GLELNDSLQNLLAKHDVIASGHPMPTQVANLSLKPSEGC-SSSIKQMEVKDFGSSPSSNA 315

Query: 181 PAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSL 240
                S TR+ +DEE+EEEDDFA LARRHS P+  PSQ T   T  ALVPVS S+ATS  
Sbjct: 316 TVTGTSTTRSHLDEEDEEEDDFAQLARRHSRPQSSPSQ-TKYATSDALVPVSASSATSCT 374

Query: 241 PAATPSN----------ALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPH--TPHTPP 288
              TP+            LA+PDPPAPVRT+KEQD+IDLLSI LSTTSTS    TPHTPP
Sbjct: 375 STPTPTPTASTSTPIALVLAIPDPPAPVRTTKEQDMIDLLSIALSTTSTSHQSDTPHTPP 434

Query: 289 ISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWA 330
            S+QS  Q P  SSTQGN Y S+ YPGNQGQ  +N+YV PWA
Sbjct: 435 ASNQSMPQAPV-SSTQGNTYVSQTYPGNQGQAAFNSYVVPWA 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439821|ref|XP_004137684.1| PREDICTED: target of Myb protein 1-like [Cucumis sativus]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 270/349 (77%), Gaps = 12/349 (3%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R G++FP+RS +AAPIFTPPVS+PTL   QA YGMPSNSSRRLDETMATE+E LS SS
Sbjct: 137 LRRSGIEFPRRSLNAAPIFTPPVSNPTLRITQAGYGMPSNSSRRLDETMATEIEGLSLSS 196

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           LDSMR+VMELL+DMLQA+ P D  AVKDEVIVDLVSRCR+NQKKLMQMLTTTGDEE+LGR
Sbjct: 197 LDSMRNVMELLNDMLQAMTPGDSLAVKDEVIVDLVSRCRANQKKLMQMLTTTGDEEILGR 256

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAG----DSSPTP 176
           GLELND LQ LLA HDAIASG  +PT+ TN SP+  E+ AA+   S   G    DSSP  
Sbjct: 257 GLELNDGLQTLLANHDAIASGSVLPTQSTNQSPQMPESSAATQKASEVGGSSLRDSSPLS 316

Query: 177 NGNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAET--GGALVPVSNS 234
           N N+ +  ASV ++ I EE+EEED+FA LARRHS  +P P Q++S E+    ALV   N+
Sbjct: 317 NANNTSSTASVAKSQIVEEDEEEDEFAQLARRHSKSQPIPIQSSSTESVDNLALVSTGNT 376

Query: 235 NATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQST 294
             +S+ P++    ALALPDPPAPV+TSKEQD+IDLLSITLST+STSPHTP TPP SSQ+T
Sbjct: 377 VTSSTPPSSNTCTALALPDPPAPVKTSKEQDMIDLLSITLSTSSTSPHTPLTPPASSQNT 436

Query: 295 QQVP-APSSTQG-NPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQ 341
            QVP + S+TQG +P+ S     +QGQVPYN+YV PWAQP  Q   QSQ
Sbjct: 437 HQVPVSASNTQGYHPHHS----ASQGQVPYNSYVVPWAQPGPQVQLQSQ 481

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483742|ref|XP_004156676.1| PREDICTED: uncharacterized protein LOC101230918 [Cucumis sativus]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 270/349 (77%), Gaps = 12/349 (3%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R G++FP+RS +AAPIFTPPVS+PTL   QA YGMPSNSSRRLDETMATE+E LS SS
Sbjct: 39  LRRSGIEFPRRSLNAAPIFTPPVSNPTLRITQAGYGMPSNSSRRLDETMATEIEGLSLSS 98

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           LDSMR+VMELL+DMLQA+ P D  AVKDEVIVDLVSRCR+NQKKLMQMLTTTGDEE+LGR
Sbjct: 99  LDSMRNVMELLNDMLQAMTPGDSLAVKDEVIVDLVSRCRANQKKLMQMLTTTGDEEILGR 158

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAG----DSSPTP 176
           GLELND LQ LLA HDAIASG  +PT+ TN SP+  E+ AA+   S   G    DSSP  
Sbjct: 159 GLELNDGLQTLLANHDAIASGSVLPTQSTNQSPQMPESSAATQKASEVGGSSLRDSSPLS 218

Query: 177 NGNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAET--GGALVPVSNS 234
           N N+ +  ASV ++ I EE+EEED+FA LARRHS  +P P Q++S E+    ALV   N+
Sbjct: 219 NANNTSSTASVAKSQIVEEDEEEDEFAQLARRHSKSQPIPIQSSSTESVDNLALVSTGNT 278

Query: 235 NATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQST 294
             +S+ P++    ALALPDPPAPV+TSKEQD+IDLLSITLST+STSPHTP TPP SSQ+T
Sbjct: 279 VTSSTPPSSNTCTALALPDPPAPVKTSKEQDMIDLLSITLSTSSTSPHTPLTPPASSQNT 338

Query: 295 QQVP-APSSTQG-NPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQ 341
            QVP + S+TQG +P+ S     +QGQVPYN+YV PWAQP  Q   QSQ
Sbjct: 339 HQVPVSASNTQGYHPHHS----ASQGQVPYNSYVVPWAQPGPQVQLQSQ 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087835|ref|XP_002308242.1| predicted protein [Populus trichocarpa] gi|222854218|gb|EEE91765.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 207/335 (61%), Positives = 249/335 (74%), Gaps = 20/335 (5%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GV+FP+RS DAAPIFTPP ++PTL   Q  YGMPSNSSRRLDETMA E+E LS S 
Sbjct: 137 LRRAGVEFPQRSLDAAPIFTPPATNPTLRLTQPGYGMPSNSSRRLDETMAAEIECLSLSG 196

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           LDSM DVMELL+DMLQAVNP + EA+KDEVIVDLV RCRSNQKKLMQML TTGDEELLG+
Sbjct: 197 LDSMWDVMELLNDMLQAVNPGNHEAIKDEVIVDLVDRCRSNQKKLMQMLATTGDEELLGK 256

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNH 180
           GLELND +Q LLAKHDAIASG P+PT+VT+   KP+E   +S +K T+A D+SP    N 
Sbjct: 257 GLELNDSMQILLAKHDAIASGSPMPTQVTSFCAKPSEGW-SSDIKPTEARDASPRSTTNS 315

Query: 181 PAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSL 240
             PV + TR+ IDEE+EEED FA LAR            +S  T GALVP+      +S 
Sbjct: 316 TTPVPNATRSAIDEEDEEEDGFAQLAR------------SSCGTNGALVPLDAGVPIAS- 362

Query: 241 PAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAP 300
             ++P NALAL DPPAPVRT KEQD+ID LS+TLST++    +PHTPP+ S++  Q+   
Sbjct: 363 -TSSPCNALALTDPPAPVRTMKEQDMIDFLSLTLSTST----SPHTPPV-SKTMPQIHVS 416

Query: 301 SSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQ 335
           S+TQG PY S+ YP N G +PYN+YV PWAQPQ+Q
Sbjct: 417 SNTQGYPYVSQTYPVNHGPIPYNSYVVPWAQPQTQ 451

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139312|ref|XP_002323050.1| predicted protein [Populus trichocarpa] gi|222867680|gb|EEF04811.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/326 (64%), Positives = 254/326 (77%), Gaps = 10/326 (3%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GVQFP+RS +AAPIFTPP ++PTL  AQ  YGMPSNSS RLDETMA E+E LS SS
Sbjct: 137 LRRAGVQFPQRSSNAAPIFTPPATNPTLRHAQPGYGMPSNSSSRLDETMAAEIEGLSLSS 196

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           LDSMRDVMELLSDMLQAVNP DREAVKDEVIVDLV++CRSNQKKLMQMLTTTGDEELLG+
Sbjct: 197 LDSMRDVMELLSDMLQAVNPRDREAVKDEVIVDLVNQCRSNQKKLMQMLTTTGDEELLGK 256

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNH 180
           GLELND +Q LLAKHDAI+SG P+PT+V +LSPK +E C +S +K T+A D+SP    N 
Sbjct: 257 GLELNDSMQILLAKHDAISSGSPMPTQVISLSPKSSEGC-SSDIKPTEARDASPRSTTNS 315

Query: 181 PAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSL 240
             PVA+VTR+ + +EE+EEDDFA LAR     +P   Q+       ALVP+     T+S 
Sbjct: 316 AMPVANVTRSAV-DEEDEEDDFAQLARSSITMEPIIRQSL------ALVPLDVGMPTAS- 367

Query: 241 PAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAP 300
             ++PSN+LAL DP  PV+T K+QD+ID LS+ LSTTSTSP TP TPP+S+Q+  Q+P  
Sbjct: 368 -TSSPSNSLALADPSLPVKTMKDQDMIDFLSLALSTTSTSPPTPPTPPVSNQAMPQIPPS 426

Query: 301 SSTQGNPYASEAYPGNQGQVPYNNYV 326
           SSTQG PY S+ YP NQG VPY++YV
Sbjct: 427 SSTQGYPYVSQTYPVNQGPVPYSSYV 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506521|ref|XP_003623549.1| Class E vacuolar protein-sorting machinery protein HSE1 [Medicago truncatula] gi|355498564|gb|AES79767.1| Class E vacuolar protein-sorting machinery protein HSE1 [Medicago truncatula]

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 203/356 (57%), Positives = 254/356 (71%), Gaps = 24/356 (6%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GV FPKRSPDAAPIFTPP +HP+L   Q  YGMPS+SS+ LDETMATE+E+LS SS
Sbjct: 138 LKRSGVSFPKRSPDAAPIFTPPPTHPSL--RQTGYGMPSSSSKTLDETMATEIESLSMSS 195

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           L+SMR V++LLSDMLQAVNP+DR AVKDEVIVDLV RCRSNQKKLMQMLTTTGDEELLGR
Sbjct: 196 LESMRHVLDLLSDMLQAVNPNDRVAVKDEVIVDLVDRCRSNQKKLMQMLTTTGDEELLGR 255

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTE---VTNLSPKPNEACAASSLKSTDAGDSSPTPN 177
           GLELND +Q+LLA+HDAIASG     +    + +S +   +   + +KS+   +S  TP 
Sbjct: 256 GLELNDNIQSLLARHDAIASGSSFQIQGASSSTMSSEVQSSFNQNEVKSSSPAESVSTPK 315

Query: 178 GNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNT---SAETGGALVPVSNS 234
            + PA V S  +   + +EEEED+FA LARRH+  +   S++    S E  G++   S +
Sbjct: 316 ASPPAEVYSEPKG--ENDEEEEDEFAQLARRHTKTQSVTSKDATIGSTENSGSMNTSSTT 373

Query: 235 ----NATSSLPAATPSNALALPDPPAPVR-TSKEQDIIDLLSITLSTTSTSPHTPHTPPI 289
                 ++++P+A  SNALALPDPPAP+  TSK+QDIIDLLSITLS T +SP T    P 
Sbjct: 374 PYVPEPSTAVPSA--SNALALPDPPAPISTTSKDQDIIDLLSITLSLTPSSPPTTTYAPS 431

Query: 290 SSQST----QQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQ 341
           S+ S      Q+P PSST+   YA +AYPGN    PYN+YVAPWAQPQS+   Q+Q
Sbjct: 432 SASSQGGMHHQIPTPSSTESYSYAPQAYPGNS---PYNSYVAPWAQPQSKSEFQTQ 484

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566755|ref|XP_003551594.1| PREDICTED: ADP-ribosylation factor-binding protein GGA1-like [Glycine max]

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 248/357 (69%), Gaps = 28/357 (7%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GV FPKRSPDAAPIFTPP +HP L   QA YGMPSNSS+ LDETMATE+E+LS SS
Sbjct: 137 LKRSGVVFPKRSPDAAPIFTPPPTHPNLRNMQAGYGMPSNSSKTLDETMATEIESLSLSS 196

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           L+SMR V++LLSDMLQAVNP D  AVKDEVI+DLV RCR+NQKKLMQMLTTTGDEELLGR
Sbjct: 197 LESMRHVLDLLSDMLQAVNPGDHAAVKDEVIIDLVDRCRTNQKKLMQMLTTTGDEELLGR 256

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTE---VTNLSPKPNEACAASSLKSTDAGDSSPTPN 177
           GLELND +Q+LLA+HDAIASG P   +    + +S + + +   S++KS+  G+SS TP 
Sbjct: 257 GLELNDSIQSLLARHDAIASGTPFSIQGASSSTVSTEVHSSVDQSTVKSSSPGESSSTPK 316

Query: 178 GNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNT---SAETGGALVPVSNS 234
            +  A V S +++    +EEEED+FA LARRHS  +   S++    S+ET G++   S +
Sbjct: 317 ASPSAIVFSESKS--QSDEEEEDEFAQLARRHSKAQSVTSKDATTGSSETSGSMKSGSTA 374

Query: 235 NATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLSTTSTSPHTPHTPP------ 288
               +   + PSNAL L +PP PV T+K+QDIIDLLSITLS  S SP T + PP      
Sbjct: 375 PHVPNPSTSVPSNALVLSNPPEPVSTTKDQDIIDLLSITLS-MSPSPQTSYAPPPQTSYA 433

Query: 289 ----------ISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQ 335
                      SSQ   Q PAPS T+G  YAS+ YPGN   + YN+YV PWAQ QS+
Sbjct: 434 PPPQTTYAPSASSQGMHQTPAPSRTEGFSYASQTYPGN---LSYNSYVVPWAQSQSK 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530201|ref|XP_003533672.1| PREDICTED: TOM1-like protein 2-like [Glycine max]

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/281 (60%), Positives = 206/281 (73%), Gaps = 8/281 (2%)

Query: 1   MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSS 60
           ++R GV FPKRSPDAAPIFTPP +HP L   QA YGMPSNSS+ LDETMATE+E+LS +S
Sbjct: 137 LKRSGVVFPKRSPDAAPIFTPPPTHPNLRNIQAGYGMPSNSSKTLDETMATEIESLSLTS 196

Query: 61  LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGR 120
           L+SMR V++LLSDMLQAVNP DR AVKDEVI+DLV RCR+NQKKLMQMLTTTGDEELLG+
Sbjct: 197 LESMRHVLDLLSDMLQAVNPGDRAAVKDEVIIDLVDRCRTNQKKLMQMLTTTGDEELLGQ 256

Query: 121 GLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNE---ACAASSLKSTDAGDSSPTPN 177
           GLELND +Q+LLA+HD+IASG P P +  + S    E   +   S++KS+  G+SS TP 
Sbjct: 257 GLELNDSIQSLLARHDSIASGTPFPIQGASSSTVSTEVPSSVDQSTVKSSSPGESSSTPK 316

Query: 178 GNHPAPVASVTRALIDEEEEEEDDFALLARRHSMPKPGPSQNT---SAETGGALVPVSNS 234
            +    V S TR+    +EEEED+FA LARRHS  +   S+     S ET G++   S +
Sbjct: 317 ASPSDIVFSETRS--QSDEEEEDEFAQLARRHSKAQSVTSKEATTGSTETSGSMNTSSTT 374

Query: 235 NATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITLS 275
               S   + PSNAL L +PP PV T+K+QDIIDLLSITLS
Sbjct: 375 PHVPSPSTSVPSNALVLSNPPEPVSTAKDQDIIDLLSITLS 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
TAIR|locus:2057140	671	AT2G38410 [Arabidopsis thalian	0.459	0.327	0.531	3.7e-82
TAIR|locus:2180982	542	AT5G01760 [Arabidopsis thalian	0.521	0.461	0.402	3.9e-43
TAIR|locus:2077808	607	AT3G08790 [Arabidopsis thalian	0.471	0.372	0.281	5e-15
TAIR|locus:2027037	506	AT1G21380 [Arabidopsis thalian	0.300	0.284	0.342	5.2e-15
TAIR|locus:2025297	446	AT1G76970 "AT1G76970" [Arabido	0.288	0.309	0.339	1.2e-11
TAIR|locus:2160654	447	AT5G63640 [Arabidopsis thalian	0.340	0.364	0.269	1.1e-06

TAIR|locus:2057140 AT2G38410 [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 3.7e-82, Sum P(4) = 3.7e-82
 Identities = 127/239 (53%), Positives = 147/239 (61%)

Query:    29 GQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKD 88
             G  Q  YGMPS SSRRLDE MATEVE LS SS++SMRDVM+LL DMLQAV+PSDREAVKD
Sbjct:   206 GIPQVGYGMPSGSSRRLDEAMATEVEGLSLSSIESMRDVMDLLGDMLQAVDPSDREAVKD 265

Query:    89 EVIVDLVSRCRSNQKKLMQMXXXXXXXXXXXXXXXXNDILQNLLAKHDAIASGLPIPTEV 148
             EVIVDLV RCRSNQKKLMQM                ND LQ LLAKHDAIASG P+P + 
Sbjct:   266 EVIVDLVERCRSNQKKLMQMLTSTGDDELLGRGLDLNDSLQILLAKHDAIASGSPLPVQA 325

Query:   149 TNLSPKPNEAC--AASSLKSTDAGDSSPTPNGNHPAPVA-SVTRALIXXXXXXXXX-FAL 204
             +  SP   +A   A SS KS++A DSS     + P P   S  ++ I          FA 
Sbjct:   326 SG-SPLSVQASKPADSSPKSSEAKDSSSIAGSSSPIPATVSTGKSPIDEEYEEEEDEFAQ 384

Query:   205 LARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKE 263
             LARRHS P   P+  T+  T      + + NA S+      + ALALPDPP PV T+KE
Sbjct:   385 LARRHSKP---PASVTTDPTS-----LESHNAASN------ALALALPDPPPPVNTTKE 429

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005795 "Golgi stack" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2180982 AT5G01760 [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
 Identities = 107/266 (40%), Positives = 153/266 (57%)

Query:     1 MQRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPS-NSSRRLDETMATEVETLSFS 59
             ++R GV+FP+RS +A P+   P    T   + +S  + S  S RRLDETMATE+E+LS S
Sbjct:   150 LKRCGVKFPQRSKEA-PLMLEPPPPVTQSSSSSSMNLMSIGSFRRLDETMATEIESLSLS 208

Query:    60 SLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMXXXXXXXXXXX 119
             SL+SMR+VM+L++DM+QAVNPSD+ A+KDE+IVDLV +CRSNQKKL+QM           
Sbjct:   209 SLESMRNVMDLVNDMVQAVNPSDKSALKDELIVDLVEQCRSNQKKLIQMLTTTADEDVLA 268

Query:   120 XXXXXNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAG--DSSPTPN 177
                  ND LQ +LA+HDAIASG+ +P  +   +P+P E   +SSLK+  A   +S+ + +
Sbjct:   269 RGLELNDSLQVVLARHDAIASGVSLPLLLQ--APEPRET--SSSLKTCGAAALESADSES 324

Query:   178 GNHPAPVASVTRALIXXXXXXXXXFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNAT 237
              +  +   S T  +          F  LA+RH++     S     ET   L+  +++  T
Sbjct:   325 SSSSSSSESETDEV----EDVKDDFIQLAKRHALLNALHSDEEE-ET---LLLGNDNEKT 376

Query:   238 SSLPAATPSNALALPDPPAPVRTSKE 263
             +   A T    LAL D      T  E
Sbjct:   377 AEAEAKTQCKDLALFDTTTTTTTKSE 402

GO:0005622 "intracellular" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

TAIR|locus:2077808 AT3G08790 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
 Identities = 71/252 (28%), Positives = 120/252 (47%)

Query:     3 RYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVE----TLSF 58
             R G+ FP+R         P ++ P+ GQ   S   P NS     E + T  E    TLS 
Sbjct:   132 RAGIVFPQR---------PQIT-PSSGQNGPSTRYPQNSRNARQEAIDTSTESEFPTLSL 181

Query:    59 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMXXXXXXXXXX 118
             + + + R +M++L++M+ A++ +++E +K EV+VDLVS+CR+ +++++ +          
Sbjct:   182 TEIQNARGIMDVLAEMMNAIDGNNKEGLKQEVVVDLVSQCRTYKQRVVHLVNSTSDESML 241

Query:   119 XXXXXXNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNG 178
                   ND LQ LLAKH+AIASG      +     K  +     + +  D G SS T NG
Sbjct:   242 CQGLALNDDLQRLLAKHEAIASG----NSMIKKEEKSKKEVPKDTTQIIDVG-SSETKNG 296

Query:   179 NHPAPVASVTRALIXXXXXXXXXFALLARRHSMPKPGPSQNTS--AETGGALVPV---SN 233
             +  A   +  +  +          A      ++   GP Q +S  A+   ++V +   S+
Sbjct:   297 SVVAYTTNGPKIDLLSGDDFETPNA--DNSLALVPLGPPQPSSPVAKPDNSIVLIDMLSD 354

Query:   234 SNATSSLPAATP 245
             +N  SS P + P
Sbjct:   355 NNCESSTPTSNP 366

GO:0005622 "intracellular" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

TAIR|locus:2027037 AT1G21380 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 52/152 (34%), Positives = 81/152 (53%)

Query:     5 GVQFPKRSPDAAPIFTPPVSHPTLGQAQAS-YGMPSNSSRRLDETMATEVETLSFSSLDS 63
             G++FP R+  + P FTPP + P + QA AS       +S + D+  A     LS   + S
Sbjct:   137 GIEFPPRTESSVPFFTPPQTQPIVAQATASDEDAAIQASLQSDDASA-----LSMEEIQS 191

Query:    64 MRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMXXXXXXXXXXXXXXX 123
              +  +++L+DML A++PS  E +K+E+IVDLV +CR+ Q+++M +               
Sbjct:   192 AQGSVDVLTDMLGALDPSHPEGLKEELIVDLVEQCRTYQRRVMALVNTTSDEELMCQGLA 251

Query:   124 XNDILQNLLAKHDAIASGLPIPTEVTNLSPKP 155
              ND LQ +L  HD  A G  +P   T  +P P
Sbjct:   252 LNDNLQRVLQHHDDKAKGNSVPA--TAPTPIP 281

GO:0005622 "intracellular" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

TAIR|locus:2025297 AT1G76970 "AT1G76970" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 52/153 (33%), Positives = 79/153 (51%)

Query:     5 GVQFPKRSPDAAPIFTPPVSHPTLGQA-QASYGMPSNSSRRLDETMATEVETLSFSSLDS 63
             G++FP R+  +   FTPP + P    A QAS      SS  L+E  + E       S+D 
Sbjct:   137 GIEFPPRTESSLSFFTPPQTQPDEDAAIQASLQGDDASSLSLEEIQSAE------GSVD- 189

Query:    64 MRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMXXXXXXXXXXXXXXX 123
                   +L DML A +P + E++K+EVIVDLV +CR+ Q+++M +               
Sbjct:   190 ------VLMDMLGAHDPGNPESLKEEVIVDLVEQCRTYQRRVMTLVNTTTDEELLCQGLA 243

Query:   124 XNDILQNLLAKHDAIASGLPIPTEVTNL-SPKP 155
              ND LQ++L +HD IA+   +P+   N  +P P
Sbjct:   244 LNDNLQHVLQRHDDIANVGSVPSNGRNTRAPPP 276

GO:0005622 "intracellular" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2160654 AT5G63640 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 49/182 (26%), Positives = 86/182 (47%)

Query:     5 GVQFPKRSPDAAPIFTPPVSHP--TLGQAQASYGMPSNSSRRLDETMATEVETLSFSS-L 61
             GV+F +R P+A P+     + P  TL +  AS      ++     T   E +++S SS L
Sbjct:   134 GVKFTQR-PNATPVVVTAQAVPRNTLNEQLASARNEGPAT-----TQQRESQSVSPSSIL 187

Query:    62 DSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMXXXXXXXXXXXXX 121
                   +E+L ++L AV+  + E  KDE  +DLV +C   ++++M +             
Sbjct:   188 QKASTALEILKEVLDAVDSQNPEGAKDEFTLDLVEQCSFQKERVMHLVMTSRDEKAVSKA 247

Query:   122 XXXNDILQNLLAKHDAIASG-LPIPTEVT-------NLSP-KP-NEACAASSLKSTDAGD 171
                N+ LQ +L +H+ + SG + +P+  T       NL P +P +       LK+++A  
Sbjct:   248 IELNEQLQRILNRHEDLLSGRITVPSRSTTSNGYHSNLEPVRPISNGDQKRELKASNANT 307

Query:   172 SS 173
              S
Sbjct:   308 ES 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.126   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      479       359   0.00081  117 3  11 23  0.49    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  193 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.39u 0.11s 36.50t   Elapsed:  00:00:02
  Total cpu time:  36.39u 0.11s 36.50t   Elapsed:  00:00:02
  Start:  Sat May 11 07:49:43 2013   End:  Sat May 11 07:49:45 2013

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005795 "Golgi stack" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037443001 SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (625 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	479
pfam03127	99	pfam03127, GAT, GAT domain	2e-19
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003

>gnl|CDD|190532 pfam03127, GAT, GAT domain

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query: 59  SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELL 118
           S L+ +++ ++LLS+MLQ  +P       DE++ +L  RCRS Q ++ +++  T DE+ L
Sbjct: 9   SELEEVKNNVKLLSEMLQEYDPGQESQSDDELLQELYERCRSMQPRIQRLIEETEDEDAL 68

Query: 119 GRGLELNDILQNLLAKHDAIASGLPIPTE 147
              L++ND L  +L +++ +  G    + 
Sbjct: 69  AELLQVNDDLNRVLNRYERLVKGRTGGSA 97

The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins. Length = 99

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 46/229 (20%), Positives = 66/229 (28%), Gaps = 12/229 (5%)

Query: 143  PIPTEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIDEEEEEEDDF 202
            P P  + + +P P    AA           +P      PA      R             
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

Query: 203  ALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSK 262
            A  A   + P    ++   A    +   + +    +  PAA  + A ALP   +P     
Sbjct: 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP-- 2827

Query: 263  EQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPS---STQGNPYASEAYPGNQGQ 319
                   L    S   T+P  P  PP  S       AP      +    +  A P    +
Sbjct: 2828 -------LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880

Query: 320  VPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTP 368
             P      P     ++       Q +   QPQ P      P PP  P P
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP 2929

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 54/229 (23%), Positives = 72/229 (31%), Gaps = 23/229 (10%)

Query: 149  TNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPAPVASVTRALIDEEEEEEDDFALLA-R 207
               +P P    A  +     A  + P      PAP      A            A L+  
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

Query: 208  RHSMPKP-GPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDI 266
            R S+P P  P+   +A    A      ++    LP  T +   A P PP P   S     
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

Query: 267  IDLLSITLS------TTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQV 320
                   +       + +  P  P  PP+   +   V   + +   P      P      
Sbjct: 2855 SVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP------ 2908

Query: 321  PYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPG 369
                      QPQ+ P PQ QPQ  P  QPQ P      P PP APT  
Sbjct: 2909 ---------PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD 2948

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 41/240 (17%), Positives = 59/240 (24%), Gaps = 20/240 (8%)

Query: 197 EEEDDFALLARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPA 256
             + D +      S  + G   +T  E    L P  +   T+  P   P    A    P 
Sbjct: 88  GPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPE--PQPPQAPESQPQ 145

Query: 257 PVRTSKEQDIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGN 316
           P   +++   ++ +   L     +P  P  P    Q   Q   P             P  
Sbjct: 146 PQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQ---QVLPQGMPPRQAAFPQQGPPEQPPG 202

Query: 317 QGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNN 376
             Q P             Q  PQ           Q P       PP     P        
Sbjct: 203 YPQPP--------QGHPEQVQPQQFLPAPSQAPAQPPL------PPQLPQQPPPLQQPQF 248

Query: 377 LAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPF 436
              +  M            +P QP    P +    +   G P   + P  P       P 
Sbjct: 249 PGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQN-QPTPHPGLPQGQNAPLPPPQQPQLLPL 307

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 29/99 (29%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 281 PHTP-HTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQ 339
           PH P  TP +      Q P     Q         P  Q Q P           Q Q    
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 799

Query: 340 SQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLA 378
            QPQ+Q   QP  P      P  P AP P Y   Q  +A
Sbjct: 800 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 838

Length = 1355

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	99.97
PF03127	100	GAT: GAT domain; InterPro: IPR004152 The GAT domai	99.9
KOG1086	594	consensus Cytosolic sorting protein/ADP-ribosylati	99.58
KOG2199	462	consensus Signal transducing adaptor protein STAM/	94.11

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.4e-30  Score=270.76  Aligned_cols=141  Identities=45%  Similarity=0.651  Sum_probs=110.1

Q ss_pred             CccccccCCCCCCCC-CCCCCCCCCCCCCCCC-cc---CCCCCCCCCCCCChhHH-HhhhhhcHHHHHHHHHHHHHHHHH
Q 011697            1 MQRYGVQFPKRSPDA-APIFTPPVSHPTLGQA-QA---SYGMPSNSSRRLDETMA-TEVETLSFSSLDSMRDVMELLSDM   74 (479)
Q Consensus         1 LKrkGVeFP~rd~da-aPIfTPp~TvP~~~~~-~~---~~~~ps~s~~~l~peq~-sklekLS~sELevVrnNVkVLsEM   74 (479)
                      ||+|||+||+|++++ ++|.+|.+..+..... +.   .+..+.-......+.+. .+...++++||++|+++|+||+||
T Consensus       131 l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~em  210 (470)
T KOG1087|consen  131 LRRKGVEFPQRDEESLAVLTPPAVLRPAPEPQEQSGPPNEANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEM  210 (470)
T ss_pred             HHHcCCcCCCCccccccccCCCCCCCCCCCchhhcCCccccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            678999999999988 5554454444432211 00   00111111111222222 244555589999999999999999


Q ss_pred             HHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 011697           75 LQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG  141 (479)
Q Consensus        75 L~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~kG  141 (479)
                      |++++|+++++.++|||++|+++||.||+|||+||++++||++|+++|++||+|++||.|||+|.+|
T Consensus       211 L~~v~p~~~e~~~~el~~~L~~qcr~~q~rv~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g  277 (470)
T KOG1087|consen  211 LNAVDPSDEEAAKDELLVDLVEQCRSKQRRVMHLIEETSDEELLCELLKLNDELQRVLERYERIASG  277 (470)
T ss_pred             HhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999

>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3

Probab=99.90  E-value=2.5e-23  Score=176.32  Aligned_cols=87  Identities=29%  Similarity=0.525  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHH
Q 011697           58 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDA  137 (479)
Q Consensus        58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr  137 (479)
                      ++||++|++|++||+|||++++|++....+.|+|+|||++||+||+||++||..+.|||+|++||++||+|++||.||++
T Consensus        10 ~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee~l~~lL~~ND~L~~~l~~Y~~   89 (100)
T PF03127_consen   10 RSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEELLGELLQANDELNQALERYDR   89 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCC
Q 011697          138 IASGLPI  144 (479)
Q Consensus       138 ~~kG~~~  144 (479)
                      |++|+..
T Consensus        90 l~~~~~~   96 (100)
T PF03127_consen   90 LVKGQQR   96 (100)
T ss_dssp             HHCCC--
T ss_pred             HHcCccc
Confidence            9998875

The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.

>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=3.8e-15  Score=155.15  Aligned_cols=107  Identities=18%  Similarity=0.284  Sum_probs=93.0

Q ss_pred             CChhHHHhhhhhcH--HHHHHHHHHHHHHHHHHHhhCC-CCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChH-HHHH
Q 011697           45 LDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNP-SDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEE-LLGR  120 (479)
Q Consensus        45 l~peq~sklekLS~--sELevVrnNVkVLsEML~e~~P-g~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEE-lL~E  120 (479)
                      +..+..+|++|+++  ..||.|+|||++|.|||-.+.- |+..++...+|++||++|+++|+.+++|+++++|+| .|+|
T Consensus       200 lVkeee~k~eKiskR~~aleev~n~vk~l~em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfrlaset~dnD~aL~e  279 (594)
T KOG1086|consen  200 LVKEEEHKLEKISKRVKALEEVNNNVKLLEEMLLDYSQEGNASPDNELLLQEVYNRCEQLRPTLFRLASETEDNDPALAE  279 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccccCcHHHHH
Confidence            33456688999987  7899999999999999998864 444444444999999999999999999999998877 9999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCCCCcccCC
Q 011697          121 GLELNDILQNLLAKHDAIASGLPIPTEVTNL  151 (479)
Q Consensus       121 LL~lNDdLNnVL~RYdr~~kG~~~~~e~~~~  151 (479)
                      +|++||.|++|+..|+.++.|+...+++...
T Consensus       280 ILqanD~ltrvi~~ykt~~~G~~~~g~a~t~  310 (594)
T KOG1086|consen  280 ILQANDNLTRVINLYKTPKEGNVANGSARTQ  310 (594)
T ss_pred             HHhhhhhHHhhhhhcccccccccccccceec
Confidence            9999999999999999999999999886543

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=94.11  E-value=0.17  Score=54.20  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhh
Q 011697           61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIAS  140 (479)
Q Consensus        61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~k  140 (479)
                      ..+....|+-|-.||.+.+|.++. .|++-|.+|+..|..|++.|-++++.+.-.  =++|++||-.|-.++..|+.++.
T Consensus       290 vfi~e~~iDrlL~~L~~~dPtd~~-~D~~~l~~le~~~~~mgPlid~~Le~idrk--~~eL~~Ln~~l~~Al~lY~kLm~  366 (462)
T KOG2199|consen  290 VFIDEDKIDRLLQVLHEADPTDEV-QDDDDLLDLEAAVHQMGPLIDRKLEKIDRK--HEELSQLNVKLLDALRLYNKLMN  366 (462)
T ss_pred             eeccHHHHHHHHHHHhhcCCCCcc-CCCHHHHHHHHHHHHhhhHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHh
Confidence            344566788888999999997664 556777899999999999999999987533  24568899999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
1wrd_A	103	TOM1, target of MYB protein 1; three-helix bundle,	2e-28
1wr6_A	111	ADP-ribosylation factor binding protein GGA3; thre	9e-27
1o3x_A	140	ADP-ribosylation factor binding protein GGA1; prot	4e-21
1naf_A	158	ADP-ribosylation factor binding protein GGA1, golg	6e-21
1oxz_A	186	ADP-ribosylation factor binding protein GGA1; GAT	2e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-04

>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103

 Score =  107 bits (268), Expect = 2e-28
 Identities = 22/99 (22%), Positives = 49/99 (49%)

Query: 49  MATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQM 108
           + +E      S L+ +   + ++S+ML  + P+  E    E++ +L   CR+ Q++++++
Sbjct: 3   LGSEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLEL 62

Query: 109 LTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTE 147
           +    +E+L    L +ND L N+  +H+         T 
Sbjct: 63  IPQIANEQLTEELLIVNDNLNNVFLRHERFERFRTGQTT 101

>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111

 Score =  102 bits (257), Expect = 9e-27
 Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 59  SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGD-EEL 117
            +L+ + + + LLS+ML   +  D      E++ +L  +C + ++ L ++ + T D +  
Sbjct: 8   HTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNS 67

Query: 118 LGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACA 160
           LG  L+ +D L  ++  +  I  G  I  EV  L+   +E  +
Sbjct: 68  LGDILQASDNLSRVINSYKTIIEGQVINGEVATLTLPDSEGNS 110

>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140

 Score = 88.4 bits (219), Expect = 4e-21
 Identities = 19/106 (17%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 44  RLDETMA------TEVETLSFSSLDSMRDVMELLSDMLQAVNPSDR-EAVKDEVIVDLVS 96
           +L + M        E  +   ++++ + + ++LL++M+ + +         ++++ +L  
Sbjct: 30  KLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 89

Query: 97  RCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHDAIASG 141
           RC   +  L ++ + T D +E L   L+ ND L  ++  +  +  G
Sbjct: 90  RCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRG 135

>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158

 Score = 88.5 bits (219), Expect = 6e-21
 Identities = 20/118 (16%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 44  RLDETMA------TEVETLSFSSLDSMRDVMELLSDMLQAVNPSDR-EAVKDEVIVDLVS 96
           +L + M        E  +   ++++ + + ++LL++M+ + +         ++++ +L  
Sbjct: 39  KLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 98

Query: 97  RCRSNQKKLMQMLTTT-GDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSP 153
           RC   +  L ++ + T  ++E L   L+ ND L  ++  +  +  G  +  + T  S 
Sbjct: 99  RCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSI 156

>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186

 Score = 82.4 bits (203), Expect = 2e-18
 Identities = 21/123 (17%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 44  RLDETMA------TEVETLSFSSLDSMRDVMELLSDMLQAVNPSDR-EAVKDEVIVDLVS 96
           +L + M        E  +   ++++ + + ++LL++M+ + +         ++++ +L  
Sbjct: 55  KLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 114

Query: 97  RCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKP 155
           RC   +  L ++ + T D +E L   L+ ND L  ++  +  +  G  +  + T  S   
Sbjct: 115 RCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPG 174

Query: 156 NEA 158
           + +
Sbjct: 175 STS 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 90/237 (37%)

Query: 1   MQRYGVQFPKRSPDAAPIFTP-PVSHP--------TLGQAQAS-----YGMP-------- 38
            + Y ++   R  +   +F    VS           L + + +      G+         
Sbjct: 109 TRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 39  --SNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDML------------QAVNPSDR- 83
                S ++   M  ++  L+  + +S   V+E+L  +L             + N   R 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 84  EAVKDE--------------VIVDLVS----------RCRSNQKKLMQMLTTTGDEELLG 119
            +++ E              +++  V            C+        +L TT  +++  
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--------ILLTTRFKQVT- 278

Query: 120 RGLELNDILQNLLAKH---DAIASGLPIPTE-------VTNLSPK--PNEACAASSL 164
                 D L      H   D  +  L  P E         +  P+  P E    +  
Sbjct: 279 ------DFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 21/167 (12%), Positives = 40/167 (23%), Gaps = 7/167 (4%)

Query: 277 TSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNY---VAPWAQPQ 333
            +   +  +  P+   +    P   +  G  Y     P                   Q  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 334 SQPLPQSQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPT 393
            Q    +       +        +AY  P      G    Q     A   +    A M  
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 394 SYRPLQPNNSFPIRGSNGSVMHGDPPASSGPGNPVSTTAQKPFIPSY 440
           + RP+       +       +       + P  P+    ++  +PS 
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITD----LTLPPPPLVIPPERMLVPSE 173

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 18/149 (12%), Positives = 35/149 (23%), Gaps = 1/149 (0%)

Query: 291 SQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQSQPQFQPGVQP 350
           S   ++V   +  Q    A+      Q   P +   A  +  Q    PQ         Q 
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 351 QYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTRANMPTSYRPLQPNNSFPIRGSN 410
             P     +       T    +   +     +  +  +  +P            P+    
Sbjct: 62  LTPAQEQLHQQID-QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 411 GSVMHGDPPASSGPGNPVSTTAQKPFIPS 439
                     +  P N +        +P 
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDLLTELPP 149

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 25/145 (17%), Positives = 40/145 (27%), Gaps = 5/145 (3%)

Query: 280 SPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQSQPLPQ 339
               P    + S   QQ   P+  Q +    +A         +N    P   P +   PQ
Sbjct: 44  QMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN---VPLVDPNAYMQPQ 100

Query: 340 SQPQFQPGVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFSSTR--ANMPTSYRP 397
              Q    +Q Q    ++     P A         N L   + +        ++     P
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP 160

Query: 398 LQPNNSFPIRGSNGSVMHGDPPASS 422
           L       +  S  S    D   S+
Sbjct: 161 LVIPPERMLVPSELSNASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 7e-05
 Identities = 26/200 (13%), Positives = 44/200 (22%), Gaps = 24/200 (12%)

Query: 210 SMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDL 269
           +  + G +     +    + P   + A  S          A+P                 
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ----------- 60

Query: 270 LSITLSTTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPW 329
               L+      H       +S +   +        N Y     P   G           
Sbjct: 61  ---FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117

Query: 330 AQPQSQPLPQSQPQFQPGVQPQYPHYSSAYP----------PPPWAPTPGYFNNQNNLAG 379
           A    QP        +P  Q       +  P          PP   P             
Sbjct: 118 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNA 177

Query: 380 ANNMFSSTRANMPTSYRPLQ 399
           + +   ST   +P +   L+
Sbjct: 178 SPDYIRSTLNAVPKNSSLLK 197

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 23/176 (13%)

Query: 212  PKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLS 271
            P   P+  + + T  +  P S S + +S P+ +P++    P  P+   TS         S
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTS---PSYSPTS 1616

Query: 272  ITLSTTS-----TSP-HTPHTPPISSQS-----TQQVPAPSSTQGNPYASEAY----PGN 316
             + S TS     TSP ++P +P  S  S     T    +P+S   +P  S +Y    P  
Sbjct: 1617 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP-TSPSYSPTSPSY 1675

Query: 317  QGQVPYNNYVAPWAQPQSQPLPQSQPQFQ---PGVQPQYPHYSSAYPPPPWAPTPG 369
                P  +  +P   P S     + P +    PG  P  P YS             
Sbjct: 1676 SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 11/200 (5%)

Query: 210  SMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDL 269
                  P+      +     P S + + +S PA +P++    P  P+   TS        
Sbjct: 1524 GAYGEAPTSPGFGVSSPGFSPTSPTYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS---P 1579

Query: 270  LSITLSTTSTSPHTPHTPPISSQSTQQVPA-PSSTQGNPYASEAYPGNQGQVPYNNYVAP 328
             S + S TS   ++P +P  S  S    P  PS +  +P  S   P      P  +  +P
Sbjct: 1580 TSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1638

Query: 329  WAQPQSQPLPQSQPQFQP---GVQPQYPHYSSAYPPPPWAPTPGYFNNQNNLAGANNMFS 385
               P S     + P + P      P  P YS   P            + +    + N   
Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1698

Query: 386  STRANMPTS--YRPLQPNNS 403
            ++ +  PTS  Y P  P  S
Sbjct: 1699 TSPSYSPTSPGYSPGSPAYS 1718

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 59/280 (21%), Positives = 86/280 (30%), Gaps = 47/280 (16%)

Query: 215  GPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQDIIDLLSITL 274
            G    TS    GA  P   S    S    +P  A   P                      
Sbjct: 1470 GSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEG------------RE 1517

Query: 275  STTSTSPHTPHTPPISSQSTQQVPAPSSTQGNPYASEAYPGNQGQVPYNNYVAPWAQPQS 334
                       +P    QS    P  +S    P++S   PG     P  +  +P      
Sbjct: 1518 GFGDYGLLGAASPYKGVQS----PGYTS----PFSSAMSPGYGLTSPSYSPSSPGYSTSP 1569

Query: 335  QPLPQSQPQFQPGVQPQYPHYSSAYPP--PPWAPT--------PGYFNNQNNLAGANNMF 384
              +P S P + P   P Y   S +Y P  P ++PT        P Y     + +  +  +
Sbjct: 1570 AYMPSS-PSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627

Query: 385  SST--------RANMPTS--YRPLQPNNS--FPIRGSNGSVMHGDPPASSGPGNPVSTTA 432
            S T         +  PTS  Y P  P+ S   P             P+ S P +P  +  
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPT 1686

Query: 433  QKPFIPSYRLFEDLNVLGSADARLKMTSSSSPSLSGTSGQ 472
               + P+   +   +   S  +     S +SPS S TS  
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPS 1724

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
1wrd_A	103	TOM1, target of MYB protein 1; three-helix bundle,	99.95
1wr6_A	111	ADP-ribosylation factor binding protein GGA3; thre	99.92
1o3x_A	140	ADP-ribosylation factor binding protein GGA1; prot	99.92
1naf_A	158	ADP-ribosylation factor binding protein GGA1, golg	99.91
1oxz_A	186	ADP-ribosylation factor binding protein GGA1; GAT	99.91
2pjw_H	88	Uncharacterized protein YHL002W; GAT domain, core	97.37
2pjw_V	91	Vacuolar protein sorting-associated protein 27; GA	96.75
3f1i_H	98	Hepatocyte growth factor-regulated tyrosine kinas	88.28

>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1

Probab=99.95  E-value=5e-28  Score=207.10  Aligned_cols=97  Identities=22%  Similarity=0.367  Sum_probs=91.9

Q ss_pred             CCChhHHHhhhhhcHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 011697           44 RLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLE  123 (479)
Q Consensus        44 ~l~peq~sklekLS~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~  123 (479)
                      ++++++++|+    ++||++|++|++||+|||++++|+++++.++|+|+|||++||+||+|||+||++++||++|+++|+
T Consensus         2 ~~~~eq~~k~----~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~   77 (103)
T 1wrd_A            2 PLGSEQIGKL----RSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLI   77 (103)
T ss_dssp             CSSSTTHHHH----HHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            4678888888    999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCC
Q 011697          124 LNDILQNLLAKHDAIASGLPI  144 (479)
Q Consensus       124 lNDdLNnVL~RYdr~~kG~~~  144 (479)
                      +||+||+||.||++|++|+..
T Consensus        78 ~ND~L~~vl~ry~~~~~~~~~   98 (103)
T 1wrd_A           78 VNDNLNNVFLRHERFERFRTG   98 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999988754

>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G

Probab=99.92  E-value=2.7e-26  Score=199.26  Aligned_cols=91  Identities=25%  Similarity=0.446  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhHHHHHHHHHH
Q 011697           58 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHD  136 (479)
Q Consensus        58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDdLNnVL~RYd  136 (479)
                      ++||++|++|++||+|||++++|++....+.|||+|||++||+||+||++||+++.| |++|+++|++||+||+||.||+
T Consensus         7 ~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~rY~   86 (111)
T 1wr6_A            7 LHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYK   86 (111)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHHHHH
Confidence            589999999999999999999999998899999999999999999999999999875 5599999999999999999999


Q ss_pred             HHhhCCCCCCcc
Q 011697          137 AIASGLPIPTEV  148 (479)
Q Consensus       137 r~~kG~~~~~e~  148 (479)
                      +|++|+.+.++.
T Consensus        87 ~~~~g~~~~~~~   98 (111)
T 1wr6_A           87 TIIEGQVINGEV   98 (111)
T ss_dssp             HTTTCC------
T ss_pred             HHhcCCCCCCcc
Confidence            999999988764

>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A

Probab=99.92  E-value=1.1e-24  Score=195.74  Aligned_cols=94  Identities=20%  Similarity=0.405  Sum_probs=85.0

Q ss_pred             hhhhhc--HHHHHHHHHHHHHHHHHHHhhCCCCccch-hhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhH
Q 011697           52 EVETLS--FSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDI  127 (479)
Q Consensus        52 klekLS--~sELevVrnNVkVLsEML~e~~Pg~~e~~-d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDd  127 (479)
                      +.++++  ++||++|++|++||+|||++++|++.... ++|||+|||++||+||+||++||++++| |++|+++|++||+
T Consensus        42 r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~  121 (140)
T 1o3x_A           42 RMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDN  121 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHH
Confidence            344444  48999999999999999999999999888 9999999999999999999999998865 5599999999999


Q ss_pred             HHHHHHHHHHHhhCCCCC
Q 011697          128 LQNLLAKHDAIASGLPIP  145 (479)
Q Consensus       128 LNnVL~RYdr~~kG~~~~  145 (479)
                      ||+||.||++|++|..+.
T Consensus       122 ln~vl~kY~~~~~g~~~~  139 (140)
T 1o3x_A          122 LTQVINLYKQLVRGEEVN  139 (140)
T ss_dssp             HHHHHHHHHHHHHTCCC-
T ss_pred             HHHHHHHHHHHhcCCCCC
Confidence            999999999999998764

>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1

Probab=99.91  E-value=8.8e-25  Score=200.09  Aligned_cols=91  Identities=19%  Similarity=0.386  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCccch-hhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhHHHHHHHHH
Q 011697           58 FSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKH  135 (479)
Q Consensus        58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~-d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDdLNnVL~RY  135 (479)
                      ++||++|++|++||+|||++++|++.... ++|||+|||++||+||+||++||++++| |++|+++|++||+||+||.||
T Consensus        59 ~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY  138 (158)
T 1naf_A           59 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLY  138 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHH
Confidence            48999999999999999999999999887 9999999999999999999999998865 559999999999999999999


Q ss_pred             HHHhhCCCCCCcc
Q 011697          136 DAIASGLPIPTEV  148 (479)
Q Consensus       136 dr~~kG~~~~~e~  148 (479)
                      ++|++|+.+.++.
T Consensus       139 ~~~~~g~~~~~~~  151 (158)
T 1naf_A          139 KQLVRGEEVNGDA  151 (158)
T ss_dssp             HHHHC--------
T ss_pred             HHHhcCCCCCCcc
Confidence            9999999987664

>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1

Probab=99.91  E-value=1.9e-24  Score=202.18  Aligned_cols=91  Identities=19%  Similarity=0.386  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCccch-hhHHHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHhhhHHHHHHHHH
Q 011697           58 FSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKH  135 (479)
Q Consensus        58 ~sELevVrnNVkVLsEML~e~~Pg~~e~~-d~ELlqEL~eqCRsmQ~RI~~LIs~t~D-EElL~ELL~lNDdLNnVL~RY  135 (479)
                      ++||++||+||+||+|||++++|++.... ++|||+|||++||+||+||++||++++| |++|+++|++||+||+||.||
T Consensus        75 ~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY  154 (186)
T 1oxz_A           75 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLY  154 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHH
Confidence            38999999999999999999999999888 9999999999999999999999998865 559999999999999999999


Q ss_pred             HHHhhCCCCCCcc
Q 011697          136 DAIASGLPIPTEV  148 (479)
Q Consensus       136 dr~~kG~~~~~e~  148 (479)
                      ++|++|+.+.++.
T Consensus       155 ~~~~~g~~~~~~~  167 (186)
T 1oxz_A          155 KQLVRGEEVNGDA  167 (186)
T ss_dssp             TTHHHHCC-----
T ss_pred             HHHhcCCCCCccc
Confidence            9999999988775

>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00034  Score=58.92  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhhCCCC-c-cchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 011697           64 MRDVMELLSDMLQAVNPSD-R-EAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG  141 (479)
Q Consensus        64 VrnNVkVLsEML~e~~Pg~-~-e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~kG  141 (479)
                      -..||+.|-++|...+|.. - +..+++=|++||..|=.+|++|.+||+.......  +++.+|+.|.++..-|+++...
T Consensus         8 q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~--eL~~Ln~kl~~a~~~Yd~lle~   85 (88)
T 2pjw_H            8 QKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKE--DMLSLRQVLANAERSYNQLMDR   85 (88)
T ss_dssp             THHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999998733 2 6678899999999999999999999998765542  6789999999999999999754

>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.008  Score=50.82  Aligned_cols=73  Identities=12%  Similarity=0.254  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhhCC-CCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 011697           67 VMELLSDMLQAVNP-SDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG  141 (479)
Q Consensus        67 NVkVLsEML~e~~P-g~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYdr~~kG  141 (479)
                      |+-+++..+..++- +..+..+++=|++||.+|-.+|+||.+.|++....-  .+++.+||.|..+..-||+|...
T Consensus        10 ~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~--~~L~~mn~Kls~a~rlYD~lLE~   83 (91)
T 2pjw_V           10 SIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKY--NTLIEMNGKISEIMNIYDRLLEQ   83 (91)
T ss_dssp             HHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555554431 244456789999999999999999999999765443  35799999999999999999753

>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}

Probab=88.28  E-value=1.1  Score=38.49  Aligned_cols=74  Identities=15%  Similarity=0.327  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHHHHHHHHHH
Q 011697           61 LDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD  136 (479)
Q Consensus        61 LevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdLNnVL~RYd  136 (479)
                      |...+..|++|-+=+....-.......|.-++.|..+.-.|+++|++.|.+.+|.-.-.|.  |.|.|..|=+--.
T Consensus         6 ~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~--LQDkL~qi~eAR~   79 (98)
T 3f1i_H            6 LKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEG--LQDKLAQIRDARG   79 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            6778888998877666654445667788999999999999999999999987665555554  4577777654433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1wrda1	93	a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1	5e-25
d1wr6a1	90	a.7.8.1 (A:211-300) ADP-ribosylation factor bindin	4e-24
d1o3xa_	112	a.7.8.1 (A:) ADP-ribosylation factor binding prote	1e-22

>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: Target of Myb protein 1, TOM1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (240), Expect = 5e-25
 Identities = 20/78 (25%), Positives = 45/78 (57%)

Query: 59  SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELL 118
           S L+ +   + ++S+ML  + P+  E    E++ +L   CR+ Q+++++++    +E+L 
Sbjct: 8   SELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLT 67

Query: 119 GRGLELNDILQNLLAKHD 136
              L +ND L N+  +H+
Sbjct: 68  EELLIVNDNLNNVFLRHE 85

>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (234), Expect = 4e-24
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 59  SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTG-DEEL 117
            +L+ + + + LLS+ML   +  D      E++ +L  +C + ++ L ++ + T  ++  
Sbjct: 6   HTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNS 65

Query: 118 LGRGLELNDILQNLLAKHDAIASG 141
           LG  L+ +D L  ++  +  I  G
Sbjct: 66  LGDILQASDNLSRVINSYKTIIEG 89

>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (225), Expect = 1e-22
 Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 44  RLDETMATE----VETLS--FSSLDSMRDVMELLSDMLQAVNPSDR-EAVKDEVIVDLVS 96
           +L + M  E    +E +S   ++++ + + ++LL++M+ + +         ++++ +L  
Sbjct: 4   KLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 63

Query: 97  RCRSNQKKLMQMLTTTG-DEELLGRGLELNDILQNLLAKHDAIASG 141
           RC   +  L ++ + T  ++E L   L+ ND L  ++  +  +  G
Sbjct: 64  RCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRG 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1wrda1	93	Target of Myb protein 1, TOM1 {Human (Homo sapiens	99.95
d1wr6a1	90	ADP-ribosylation factor binding protein Gga3 {Huma	99.92
d1o3xa_	112	ADP-ribosylation factor binding protein Gga1 {Huma	99.91

>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: Target of Myb protein 1, TOM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.7e-28  Score=200.11  Aligned_cols=91  Identities=22%  Similarity=0.395  Sum_probs=86.4

Q ss_pred             HHHhhhhhcHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHhhhHH
Q 011697           49 MATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDIL  128 (479)
Q Consensus        49 q~sklekLS~sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~DEElL~ELL~lNDdL  128 (479)
                      +++|+    ++||++|++||+||+|||++++|++.+..+.|+|+|||++||+||+||++||++++|||+|+++|++||+|
T Consensus         2 ~~~kl----~~eLe~v~~n~~lL~eML~~~~p~~~~~~d~eli~eL~~~C~~~q~~i~~li~~~~dee~l~~lL~~ND~L   77 (93)
T d1wrda1           2 QIGKL----RSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNL   77 (93)
T ss_dssp             THHHH----HHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             hhHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            45565    89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCC
Q 011697          129 QNLLAKHDAIASGLP  143 (479)
Q Consensus       129 NnVL~RYdr~~kG~~  143 (479)
                      ++||.||++|.+++.
T Consensus        78 ~~vl~ry~r~~k~r~   92 (93)
T d1wrda1          78 NNVFLRHERFERFRT   92 (93)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999998764

>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-26  Score=191.11  Aligned_cols=84  Identities=23%  Similarity=0.436  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcC-ChHHHHHHHHhhhHHHHHHHHHHH
Q 011697           59 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTG-DEELLGRGLELNDILQNLLAKHDA  137 (479)
Q Consensus        59 sELevVrnNVkVLsEML~e~~Pg~~e~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~-DEElL~ELL~lNDdLNnVL~RYdr  137 (479)
                      +||++|++|++||+|||++++|++.+..+.|||+|||++||+||+|||+||+++. |||+|+++|++||+|++||.||++
T Consensus         6 s~le~v~~n~~lL~eML~~~~p~~~~~~~~eli~eL~~~C~~~qp~i~~li~~~~~dee~l~elL~~ND~L~~vl~~y~~   85 (90)
T d1wr6a1           6 HTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKT   85 (90)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999876 556999999999999999999999


Q ss_pred             HhhCC
Q 011697          138 IASGL  142 (479)
Q Consensus       138 ~~kG~  142 (479)
                      +++|+
T Consensus        86 ~~~G~   90 (90)
T d1wr6a1          86 IIEGQ   90 (90)
T ss_dssp             TTTCC
T ss_pred             HHCCC
Confidence            99986

>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.7e-25  Score=187.78  Aligned_cols=94  Identities=18%  Similarity=0.389  Sum_probs=83.1

Q ss_pred             HhhhhhcH--HHHHHHHHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHHHHHHHHHHHHhhhcC-ChHHHHHHHHhhh
Q 011697           51 TEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDRE-AVKDEVIVDLVSRCRSNQKKLMQMLTTTG-DEELLGRGLELND  126 (479)
Q Consensus        51 sklekLS~--sELevVrnNVkVLsEML~e~~Pg~~e-~~d~ELlqEL~eqCRsmQ~RI~~LIs~t~-DEElL~ELL~lND  126 (479)
                      .+.+++++  +||++|++|++||+|||+++.|++.. +.+.|+|+|||++||+||+||++||+++. ||++|+++|++||
T Consensus        15 ~~~e~~~k~~~eLe~v~~n~~lL~eML~~~~~~~~~~~~~~ell~eL~~~c~~~qp~i~~li~~~~ddee~l~elL~~ND   94 (112)
T d1o3xa_          15 KRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQAND   94 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence            34555554  89999999999999999999887554 56779999999999999999999999886 4669999999999


Q ss_pred             HHHHHHHHHHHHhhCCCC
Q 011697          127 ILQNLLAKHDAIASGLPI  144 (479)
Q Consensus       127 dLNnVL~RYdr~~kG~~~  144 (479)
                      +||+||.||+++++|+.+
T Consensus        95 ~L~~vl~rY~~~~~g~~~  112 (112)
T d1o3xa_          95 NLTQVINLYKQLVRGEEV  112 (112)
T ss_dssp             HHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            999999999999999864