Citrus Sinensis ID: 011710

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48

MFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEINAEPME

cccccccccccHHHHHHHcccccccccccccHHHHHccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHHHccccccccccccccEEcccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHcccccccEEEcccccccHHHHHHHHHcccccccEEEccccccccHHHHHHHHcccccccccEEcccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccccccccccEEEccccccccHHHHHHHHccccccccEEEEcccccHHHHHHHHHHcccEEEEEcccccccccccccccccccccccHHHHHHHHHccccccccHHHHHcccccccccc

cccHHHccccccHHHHHHHHHHHHHHHHcccccccEEEEccccccccHcHHHHcccccccHcEEEcccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHccccccEEEccccccEcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHcccccEEEEcccccccHHHHHHHHHcccccccEEEccccccccHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHcccccEEEcccccHccHHHHHHHHHHcHHHccccccccEEEEEccccHccHHHHHHHHHcccHHHcEEEccccccHHHHHHHHHccccEEEEEccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHccccccc

MFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTEllspnvephqspnqirpsilpgiQKLCLSVDYITDAMVGTISQGLVslthldlrdapliepritfdltnsglqqinqhgkLKHLSLIRSQEFLITYFRRVNDLGILLMADKCasmesiclggfcrvtdtgFKTILHSCSNLYKLRvshgtqltdlVFHDISATSLSLTHVCLRWCNLLTNHAIKslasntgikvldlrdcknlGDEALRAISSLPQLKILlldgsdisdvgVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDgtsklqlqeldlsnlphlsdngiltlatcrvpiselrvrqcpligdTSVIALASMLvdddrwygssirlldlyncggiTQLAFRWlkkpyfprlrwlgvtgsvNRDILDALArsrpflnvacrgeelgvdqwdnsdgmymhdydEVDELEQWLMegedesdndeeMANAeinaepme

mfdislflRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKslasntgikvlDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFlnvacrgeelgvdqwdnsdGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAeinaepme

**DISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLS*************PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWL************************

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		479	2.2.26 [Sep-21-2011]
Q9SDA8		656	F-box/LRR-repeat protein	yes	no	0.960	0.701	0.610	1e-158
Q9ZWC6		607	F-box protein At-B OS=Ara	no	no	0.807	0.637	0.372	1e-62
A1A5X2		489	F-box/LRR-repeat protein	yes	no	0.524	0.513	0.266	1e-14
Q9UKC9		423	F-box/LRR-repeat protein	yes	no	0.519	0.588	0.286	2e-14
Q5R3Z8		423	F-box/LRR-repeat protein	yes	no	0.519	0.588	0.286	2e-14
Q8BH16		423	F-box/LRR-repeat protein	yes	no	0.448	0.508	0.298	2e-13
C8V4D4		585	SCF E3 ubiquitin ligase c	yes	no	0.592	0.485	0.243	6e-13
A6H779		423	F-box/LRR-repeat protein	yes	no	0.519	0.588	0.271	1e-12
Q5BJ29		491	F-box/LRR-repeat protein	no	no	0.524	0.511	0.25	1e-12
Q9CZV8		436	F-box/LRR-repeat protein	no	no	0.501	0.550	0.267	1e-11

>sp\|Q9SDA8\|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1	Back alignment and function desciption

 Score =  559 bits (1440), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/465 (61%), Positives = 363/465 (78%), Gaps = 5/465 (1%)

Query: 1   MFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPS-ILP 59
           MFD+SL+LR    R++ L S++LT LE+G+I+S M+T+LL+      Q  N++  S +L 
Sbjct: 175 MFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNRVTTSTVLQ 234

Query: 60  GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKL 119
            +Q+L LSVD ITDA+V  IS+ L SL  LD+RDAPL +PR   DLT+ GL +INQ+GKL
Sbjct: 235 NVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKL 294

Query: 120 KHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL 179
           KHLSLIRSQEF  TYFRRV+D G+L +ADKC  ME+ICLGGFCRVTD GFKTILHSC++L
Sbjct: 295 KHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILHSCASL 354

Query: 180 YKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCK 239
            K  + HG +LTDLVFHDI AT+LSL+HV LR C+LLT+HAI+ LAS+  ++ LDLR C+
Sbjct: 355 SKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCR 414

Query: 240 NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 299
           NL DE L A+S LP+LK+LLLDG+DISD G+SYL+  V+ SLV LS+RGC+ LTDK +S 
Sbjct: 415 NLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMST 474

Query: 300 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 359
           LFDG+SKL L+ELDLSNLP+L+D  I  LA    PI++L++R+C LIGD SV+ALAS  V
Sbjct: 475 LFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALASTRV 534

Query: 360 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPF 419
            +D   GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+DALAR RP 
Sbjct: 535 YEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVDALARRRPH 594

Query: 420 LNVACRGEELG---VDQWDNSDGMYMHDYDEVDELEQWLMEGEDE 461
           L V+CRGEELG    D WD++D ++ H   + DELEQW++  E +
Sbjct: 595 LQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWILGDEGD 638

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9ZWC6\|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1	Back alignment and function description

>sp\|A1A5X2\|FBXL7_DANRE F-box/LRR-repeat protein 7 OS=Danio rerio GN=fbxl7 PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|C8V4D4\|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q5BJ29\|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		479
255577864		643	ubiquitin-protein ligase, putative [Rici	0.987	0.735	0.833	0.0
224080674		643	predicted protein [Populus trichocarpa]	0.929	0.692	0.831	0.0
356575440		637	PREDICTED: F-box/LRR-repeat protein 10-l	0.989	0.744	0.779	0.0
359474824		719	PREDICTED: F-box/LRR-repeat protein 10-l	0.949	0.632	0.796	0.0
357444831		643	F-box/LRR-repeat protein [Medicago trunc	0.997	0.743	0.773	0.0
224103131		644	f-box family protein [Populus trichocarp	0.935	0.695	0.826	0.0
359474995		640	PREDICTED: F-box/LRR-repeat protein 10-l	0.949	0.710	0.789	0.0
449454247		637	PREDICTED: F-box/LRR-repeat protein 10-l	0.951	0.715	0.723	0.0
449508806		637	PREDICTED: LOW QUALITY PROTEIN: F-box/LR	0.951	0.715	0.721	0.0
413956960		640	hypothetical protein ZEAMMB73_141308 [Ze	0.970	0.726	0.623	1e-165

>gi\|255577864\|ref\|XP_002529805.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223530716\|gb\|EEF32587.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/474 (83%), Positives = 438/474 (92%), Gaps = 1/474 (0%)

Query: 1   MFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPG 60
           MFD+SLFLRHNF RVWALASEKLTSLEIGYISSVMVTELL+P+V PHQS N IRPSILPG
Sbjct: 168 MFDVSLFLRHNFTRVWALASEKLTSLEIGYISSVMVTELLTPSVGPHQSLNHIRPSILPG 227

Query: 61  IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLK 120
           IQKL LSVDYITD MVGTIS+GL+ LTHLDLRD PLIEPRITFDLTNSGLQQINQ+GKL+
Sbjct: 228 IQKLSLSVDYITDTMVGTISKGLMFLTHLDLRDTPLIEPRITFDLTNSGLQQINQYGKLR 287

Query: 121 HLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLY 180
           HLSL RSQEF+ITYFRRVNDLGILLMAD CASMESICLGGFC+VTDTGFKTILHSCS+L+
Sbjct: 288 HLSLFRSQEFVITYFRRVNDLGILLMADNCASMESICLGGFCQVTDTGFKTILHSCSSLH 347

Query: 181 KLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKN 240
           +LRVS G  LTDLVFHD+SATSL L+HVCLRWCNLLTN+AIK+L +NT +KVLDLRDCKN
Sbjct: 348 RLRVSRGIHLTDLVFHDMSATSLCLSHVCLRWCNLLTNYAIKNLVANTHLKVLDLRDCKN 407

Query: 241 LGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISAL 300
           LGDE+LRAIS+L +LKILLLDGS ISD G+S LR  VI+SLV LS+RGCKRLTDKCISAL
Sbjct: 408 LGDESLRAISTLFELKILLLDGSGISDSGLSNLRGRVISSLVSLSVRGCKRLTDKCISAL 467

Query: 301 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 360
           F+G SKL+LQELD+SNLP+LSDNGIL LA  R+PIS LR+RQCPLIGDTSV+ALASM VD
Sbjct: 468 FEGASKLELQELDISNLPNLSDNGILCLAKSRLPISALRMRQCPLIGDTSVMALASMQVD 527

Query: 361 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFL 420
           +DR +GSS+RLLD+YNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDI+DALAR+RPFL
Sbjct: 528 EDRGHGSSLRLLDIYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDIIDALARNRPFL 587

Query: 421 NVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEIN 474
           +VAC  EELG+DQWDNSD +YMHDYDEVDELEQWL+EGE E +NDEEM +AEIN
Sbjct: 588 HVACHAEELGIDQWDNSDSLYMHDYDEVDELEQWLLEGEFE-NNDEEMVDAEIN 640

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224080674\|ref\|XP_002306206.1\| predicted protein [Populus trichocarpa] gi\|222849170\|gb\|EEE86717.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356575440\|ref\|XP_003555849.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Glycine max]	Back alignment and taxonomy information

>gi\|359474824\|ref\|XP_003631537.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357444831\|ref\|XP_003592693.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|358345302\|ref\|XP_003636720.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355481741\|gb\|AES62944.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355502655\|gb\|AES83858.1\| F-box/LRR-repeat protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224103131\|ref\|XP_002312937.1\| f-box family protein [Populus trichocarpa] gi\|222849345\|gb\|EEE86892.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359474995\|ref\|XP_003631565.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454247\|ref\|XP_004144867.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449508806\|ref\|XP_004163416.1\| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|413956960\|gb\|AFW89609.1\| hypothetical protein ZEAMMB73_141308 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		479
TAIR\|locus:2827644		656	AT2G17020 "AT2G17020" [Arabido	0.983	0.717	0.605	5.5e-148
TAIR\|locus:2020477		607	AT1G55590 [Arabidopsis thalian	0.810	0.639	0.378	4.8e-62
RGD\|1562243		422	Fbxl2 "F-box and leucine-rich	0.446	0.507	0.315	5.9e-17
MGI\|MGI:1919429		423	Fbxl2 "F-box and leucine-rich	0.446	0.505	0.310	7.9e-17
UNIPROTKB\|Q9UKC9		423	FBXL2 "F-box/LRR-repeat protei	0.446	0.505	0.315	7.9e-17
UNIPROTKB\|Q5R3Z8		423	FBXL2 "F-box/LRR-repeat protei	0.446	0.505	0.315	7.9e-17
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.446	0.507	0.310	1.3e-16
UNIPROTKB\|F1NHD2		423	FBXL2 "Uncharacterized protein	0.446	0.505	0.301	1.3e-16
ASPGD\|ASPL0000017608		585	grrA [Emericella nidulans (tax	0.793	0.649	0.246	2e-15
UNIPROTKB\|A6H779		423	FBXL2 "F-box/LRR-repeat protei	0.446	0.505	0.297	6.9e-15

TAIR\|locus:2827644 AT2G17020 "AT2G17020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
 Identities = 292/482 (60%), Positives = 371/482 (76%)

Query:     1 MFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPS-ILP 59
             MFD+SL+LR    R++ L S++LT LE+G+I+S M+T+LL+      Q  N++  S +L 
Sbjct:   175 MFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNRVTTSTVLQ 234

Query:    60 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKL 119
              +Q+L LSVD ITDA+V  IS+ L SL  LD+RDAPL +PR   DLT+ GL +INQ+GKL
Sbjct:   235 NVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKL 294

Query:   120 KHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL 179
             KHLSLIRSQEF  TYFRRV+D G+L +ADKC  ME+ICLGGFCRVTD GFKTILHSC++L
Sbjct:   295 KHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILHSCASL 354

Query:   180 YKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCK 239
              K  + HG +LTDLVFHDI AT+LSL+HV LR C+LLT+HAI+ LAS+  ++ LDLR C+
Sbjct:   355 SKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCR 414

Query:   240 NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 299
             NL DE L A+S LP+LK+LLLDG+DISD G+SYL+  V+ SLV LS+RGC+ LTDK +S 
Sbjct:   415 NLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMST 474

Query:   300 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 359
             LFDG+SKL L+ELDLSNLP+L+D  I  LA    PI++L++R+C LIGD SV+ALAS  V
Sbjct:   475 LFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALASTRV 534

Query:   360 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPF 419
              +D   GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+DALAR RP 
Sbjct:   535 YEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVDALARRRPH 594

Query:   420 LNVACRGEELG---VDQWDNSDGMYMHDYDEVDELEQWLM--EG----EDESDNDEEMAN 470
             L V+CRGEELG    D WD++D ++ H   + DELEQW++  EG    ED  D  EE A+
Sbjct:   595 LQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWILGDEGDVEMEDAEDESEEDAS 653

Query:   471 AE 472
              E
Sbjct:   654 EE 655

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006486 "protein glycosylation" evidence=RCA

TAIR\|locus:2020477 AT1G55590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000017608 grrA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDA8	FBL10_ARATH	No assigned EC number	0.6107	0.9603	0.7012	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00041397	hypothetical protein (643 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		479
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	8e-11
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-06
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	8e-04
cd00116		319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 204 SLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDL---RDCKNLGDEALRAISSL-PQLKIL 258
           +L  + LR C  +T+  I +LA+N   ++ ++L   R+   + D +L A+      L+ +
Sbjct: 79  NLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTV 138

Query: 259 LLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP 318
              G D++D GV  L      SL +LSL  C+ LTD+ I A+        L  L+    P
Sbjct: 139 GFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCP 198

Query: 319 HLSD 322
            ++D
Sbjct: 199 LITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		479
KOG4341		483	consensus F-box protein containing LRR [General fu	99.96
KOG4341		483	consensus F-box protein containing LRR [General fu	99.95
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.79
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.77
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.71
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.71
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.68
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.62
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.57
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.55
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.48
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.47
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.45
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.41
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.26
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.15
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.12
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.95
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.86
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.85
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.79
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.75
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.74
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.66
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.56
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.54
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.53
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.45
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.42
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.4
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.27
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.22
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.2
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.12
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.1
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.94
KOG4308		478	consensus LRR-containing protein [Function unknown	97.75
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.61
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.54
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.51
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.51
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.5
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.49
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.45
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.39
KOG4308		478	consensus LRR-containing protein [Function unknown	97.26
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	97.02
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
PRK15386		426	type III secretion protein GogB; Provisional	96.67
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.59
PLN03150		623	hypothetical protein; Provisional	96.57
PLN03150		623	hypothetical protein; Provisional	96.55
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.31
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.29
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	96.09
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.07
PRK15386		426	type III secretion protein GogB; Provisional	96.06
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.91
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.91
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.81
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.53
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.18
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	94.37
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	94.34
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.92
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.85
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	92.37
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	92.1
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	90.74
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.5
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.3
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	87.33
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.89
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	83.5
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	82.2

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=99.96  E-value=1.9e-29  Score=226.47  Aligned_cols=381  Identities=21%  Similarity=0.271  Sum_probs=303.4

Q ss_pred             HhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeec--CccChhHHHHHHHcCC-CccEEeccC
Q 011710           17 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSV--DYITDAMVGTISQGLV-SLTHLDLRD   93 (479)
Q Consensus        17 ~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~-~L~~L~l~~   93 (479)
                      ..+||.+....++++..|.+.+..+++..    |...... -.+.++.++..  -.+...++..+.+++. .|+.|.++|
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~----~n~~AlD-~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG  147 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTM----WNKLALD-GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRG  147 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHH----hhhhhhc-cccceeeehhcchhcCCCcceehHhhhhccccccccccc
Confidence            34566777777777766665554433321    1111111 22334444441  2334455556666554 688999998


Q ss_pred             CCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHH
Q 011710           94 APLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTI  172 (479)
Q Consensus        94 ~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  172 (479)
                      |.        .+.+..+..+. .||++++|.+.        ++..+++..+..++..|++|+.|++..|..+++..++.+
T Consensus       148 ~r--------~v~~sslrt~~~~CpnIehL~l~--------gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l  211 (483)
T KOG4341|consen  148 CR--------AVGDSSLRTFASNCPNIEHLALY--------GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL  211 (483)
T ss_pred             cc--------cCCcchhhHHhhhCCchhhhhhh--------cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence            85        34455555444 78999999884        467888888888989999999999999999999888888


Q ss_pred             HHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHhhh-
Q 011710          173 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-  250 (479)
Q Consensus       173 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-  250 (479)
                      ...|++|+.|+++.|+.++..++..+.+.+..++.+.+.||...+...+.... .++-+..+++..|+.+++..+..+. 
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence            89999999999999999988888889998888999988899888877766554 6777888888889889988877666 


Q ss_pred             cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHH
Q 011710          251 SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA  329 (479)
Q Consensus       251 ~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  329 (479)
                      .+..|+.|..+++ .+++..+..+++ .+++|+.|.+++|.++++.++..++..|  +.|+.+++..|..+.+..+..++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hhhhhhcccccceehhhhHhhhc
Confidence            6788999999886 788899999999 8999999999999999999999999988  89999999999888888888999


Q ss_pred             hcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC--CH
Q 011710          330 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV--NR  407 (479)
Q Consensus       330 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~--~~  407 (479)
                      .+||.|+.|.+++|..++|.|+..+..-.-     ....|+.+.+++|+.+++..+..+..  |++|+.+++.+|.  ..
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQDVTK  441 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHHhh--Ccccceeeeechhhhhh
Confidence            999999999999999999998888766332     57889999999999999999999876  9999999999997  67


Q ss_pred             HHHHHHHhcCCCceeeccCcc
Q 011710          408 DILDALARSRPFLNVACRGEE  428 (479)
Q Consensus       408 ~~~~~~~~~~p~l~~~~~~~~  428 (479)
                      ..+.+++...|.+++......
T Consensus       442 ~~i~~~~~~lp~i~v~a~~a~  462 (483)
T KOG4341|consen  442 EAISRFATHLPNIKVHAYFAP  462 (483)
T ss_pred             hhhHHHHhhCccceehhhccC
Confidence            789999999999988765543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		479
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	6e-30
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-25
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-24
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-20
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-13
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-28
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-26
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-21
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	7e-27
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	8e-25
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	9e-14
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-18
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-17
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-10
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-14
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-13
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-12
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-07
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	9e-13
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	7e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-12
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-07
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	8e-09
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	4e-07
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	1e-04
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	3e-05
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	7e-04
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	8e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

 Score =  121 bits (306), Expect = 6e-30
 Identities = 56/323 (17%), Positives = 107/323 (33%), Gaps = 45/323 (13%)

Query: 58  LPGIQKLC-LSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQH 116
           L   +KLC L + Y+    +  +      +  LDL  A L         T      I + 
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE--------TEDHCTLIQKC 317

Query: 117 GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC----------RVTD 166
             L+ L               + D G+ ++A  C  ++ + +               V+ 
Sbjct: 318 PNLEVLETRNV----------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 167 TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHV-------CLRWCNLLTNH 219
            G   +   C  L  + V + + +T+     I     +L            R  +L  ++
Sbjct: 368 RGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426

Query: 220 AIKSLASN-TGIKVLDLR-DCKNLGDEALRAISSL-PQLKILLLDGSDISDVGVSYLRLT 276
            ++SL      ++          L D  L  I    P ++ +LL     SD G+      
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SR 485

Query: 277 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLSDNGILTLATCRVPI 335
              +L KL +RGC   +++ I+A         L+ L +      ++   ++ +A     I
Sbjct: 486 GCPNLQKLEMRGC-CFSERAIAAAVTKLPS--LRYLWVQGYRASMTGQDLMQMARPYWNI 542

Query: 336 SELRVRQCPLIGDTSVIALASML 358
             +  R+ P +     I      
Sbjct: 543 ELIPSRRVPEVNQQGEIREMEHP 565

PyMOL of 3ogk

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		479
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.88
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.83
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.79
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.79
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.76
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.76
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.75
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.75
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.74
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.74
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.74
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.74
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.72
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.71
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.7
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.68
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.67
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.67
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.67
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.66
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.61
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.61
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.55
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.55
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.53
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.52
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.52
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.51
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.5
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.48
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.48
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.48
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.46
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.44
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.44
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.43
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.43
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.41
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.41
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.41
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.39
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.39
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.38
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.37
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.37
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.33
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.29
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.28
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.27
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.21
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.2
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.19
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.18
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.18
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.17
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.17
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.14
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.13
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.12
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.11
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.08
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.05
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.04
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.99
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.98
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.89
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.85
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.79
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.77
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.77
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.68
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.67
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.65
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.63
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.63
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.63
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.62
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.57
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.56
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.55
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.55
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.54
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.53
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.53
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.53
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.48
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.48
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.48
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.45
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.4
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.34
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.14
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.13
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.13
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.06
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.99
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.98
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.98
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.86
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.8
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.75
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.7
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.67
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.67
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.63
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.5
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.26
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.26
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.24
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	97.16
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	97.07
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.96
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.66
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	92.81
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	91.95

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=99.97  E-value=1e-27  Score=245.34  Aligned_cols=233  Identities=19%  Similarity=0.213  Sum_probs=189.7

Q ss_pred             hCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCCCEEec--------CCCCCCChHH
Q 011710          175 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDL--------RDCKNLGDEA  245 (479)
Q Consensus       175 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l--------~~~~~l~~~~  245 (479)
                      .+++|++|++++|. +++..+..+...+++|++|++.+|  +++.++..+. .+++|+.|++        ..|..+++.+
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~  363 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG  363 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence            45677777777766 666667767777888888888876  5555555554 5889999988        3456778777


Q ss_pred             HHhhh-cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecC-----CCCCCC----HHHHHHHhccCCCCCccEEecC
Q 011710          246 LRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR-----GCKRLT----DKCISALFDGTSKLQLQELDLS  315 (479)
Q Consensus       246 ~~~l~-~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~~L~~L~l~  315 (479)
                      +..+. .+++|+.|.+..+.+++.++..+.. .+++|+.|+++     +|..++    +.++..++..+  ++|++|+++
T Consensus       364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~--~~L~~L~L~  440 (594)
T 2p1m_B          364 LVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC--KDLRRLSLS  440 (594)
T ss_dssp             HHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC--TTCCEEECC
T ss_pred             HHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC--CCccEEeec
Confidence            77766 5899999988888999888888876 68999999998     677888    77877777666  899999997


Q ss_pred             CCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCC
Q 011710          316 NLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR  395 (479)
Q Consensus       316 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~  395 (479)
                      +  .+++.++..+...+++|+.|++++| .+++.++..+..        .+++|+.|++++|+ +++.++..+.. .+++
T Consensus       441 ~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~--------~~~~L~~L~L~~n~-~~~~~~~~~~~-~l~~  507 (594)
T 2p1m_B          441 G--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS--------GCDSLRKLEIRDCP-FGDKALLANAS-KLET  507 (594)
T ss_dssp             S--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH--------HCTTCCEEEEESCS-CCHHHHHHTGG-GGGG
T ss_pred             C--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHh--------cCCCcCEEECcCCC-CcHHHHHHHHH-hCCC
Confidence            6  7889998888888999999999999 789999998877        79999999999999 69888877765 6899


Q ss_pred             ccEEEecCCC-CHHHHHHHHhcCCCceeeccC
Q 011710          396 LRWLGVTGSV-NRDILDALARSRPFLNVACRG  426 (479)
Q Consensus       396 L~~L~l~~~~-~~~~~~~~~~~~p~l~~~~~~  426 (479)
                      |+.|++++|+ ....+..+....|.+++....
T Consensus       508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             SSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence            9999999998 566788888889999776554

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		479
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-08
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-08
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 21/246 (8%)

Query: 197 DISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 256
           D++   LS   +  R      +  +    S   ++ +DL +           +S   +L+
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 257 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL------- 309
            L L+G  +SD  V+ L     ++LV+L+L GC   ++  +  L    S+L         
Sbjct: 75  NLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 310 ----------QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 359
                            +  L+ +G           + +R     +  D S   +     
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 360 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPF 419
             + +  + ++ L L  C  I       L +   P L+ L V G V    L  L  + P 
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGE--IPTLKTLQVFGIVPDGTLQLLKEALPH 250

Query: 420 LNVACR 425
           L + C 
Sbjct: 251 LQINCS 256

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		479
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.28
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.13
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.13
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.11
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.09
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.98
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.98
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.98
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.95
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.83
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.79
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.73
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.7
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.68
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.65
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.61
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.6
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.54
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.51
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.43
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.4
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.35
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.35
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.33
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.13
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.08
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.45
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.41
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.63
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.43

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.6e-23  Score=187.37  Aligned_cols=206  Identities=18%  Similarity=0.256  Sum_probs=179.9

Q ss_pred             CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710           58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR  137 (479)
Q Consensus        58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~  137 (479)
                      ..+|++|+++++.+++..+..+...+++|++|++++|         .+++..+..+..+++|++|++++        +..
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~---------~l~~~~~~~l~~~~~L~~L~Ls~--------c~~  107 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSDPIVNTLAKNSNLVRLNLSG--------CSG  107 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------BCCHHHHHHHTTCTTCSEEECTT--------CBS
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc---------CCCcHHHHHHhcCCCCcCccccc--------ccc
Confidence            5689999999999999999999899999999999998         37788888899999999999954        678


Q ss_pred             cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHH-HhCCCCceEEecCCC-CCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710          138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTIL-HSCSNLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNL  215 (479)
Q Consensus       138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~  215 (479)
                      +++.++..+...|++|++|++++|..+++.++.... ..+++|+.|+++++. .+++.++..+...+++|++|++++|..
T Consensus       108 itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             ccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC
Confidence            899999888889999999999999889887775544 445799999999874 578888888888999999999999988


Q ss_pred             CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCcc
Q 011710          216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV  282 (479)
Q Consensus       216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~  282 (479)
                      +++.++..+..+++|++|++++|..+++.++..++++|+|+.|++.++ +++.++..+.. .+|+|+
T Consensus       188 itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~-~lp~L~  252 (284)
T d2astb2         188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE-ALPHLQ  252 (284)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH-HSTTSE
T ss_pred             CCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHH-hCcccc
Confidence            998888888899999999999998899888888889999999999888 77788887777 688776

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure