Citrus Sinensis ID: 011736

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MAGMVQEDGASSVSSSPLQFFSMMSLSPAFGSPYPWLRELKSEERGLCLIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSSHLQRVLHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRRYD
ccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccEEEEEEHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEEEEccEEEEEEccccEEEEEEccccccc
cccHcccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcHHHHcHHcccHHHHcccccEEEEEHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccEEEEEEEccccccHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEEcccEEEEcccccEEEEEEcccccccc
magmvqedgassvsssplqffsmmslspafgspypwlrelkseERGLCLIHLLVACANHVaagsvenanIGLEQishlaspdgdTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIidlnsfepAQWINLLQTlsarpegpphlritgIHEQKEVLEQMALRLTEEaekldipfqfnpivsklenvdleslRKTGEALAVSSVLQMHRLlatddemprrtspsasrtssssHLQRVLHMNRRTLGEwlekdsvlmfspspdsasasastplslaaspkmGSFLNALWSLSPKVVVVTeqesnhngpSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELagfgrmplsyHGILQARRLLQsygydgykikeengclvicwqdrplfsvsawrfrryd
magmvqedgassvsSSPLQFFSMMSLSPAFGSPYPWLRELKSEERGLCLIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRLLatddemprrtspsasrtsssshlqrVLHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKniiacegierrerHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGclvicwqdrplfsvsawrfrryd
MAGMVQEDGAssvsssPLQFFSMMSLSPAFGSPYPWLRELKSEERGLCLIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNstkissiteeiiVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRLLATDDEMprrtspsasrtssssHLQRVLHMNRRTLGEWLEKDSVLMFspspdsasasastplslaaspKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRRYD
*************************LSPAFGSPYPWLRELKSEERGLCLIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSA******HLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHR**********************************TLGEWL********************************SFLNALWSLSPKVVVVT***********MERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFR***
*************************************************IHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWP**************TEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSSHLQRVLHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRR**
****************PLQFFSMMSLSPAFGSPYPWLRELKSEERGLCLIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRLLATDD*******************QRVLHMNRRTLGEWLEKDSVLMFSP**************LAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRRYD
************************************LRELKSEERGLCLIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRLLATDD******SP*ASRTSSSSHLQRVLHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRR**
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MAGMVQEDGASSVSSSPLQFFSMMSLSPAFGSPYPWLRELKSEERGLCLIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSSHLQRVLHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRRYD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q9LPR8482 Scarecrow-like protein 3 yes no 0.989 0.981 0.641 1e-176
Q8W127618 DELLA protein SLN1 OS=Hor N/A no 0.763 0.590 0.323 9e-58
Q9LDL7490 Scarecrow-like transcript no no 0.755 0.736 0.322 1e-57
Q8GVE1544 Chitin-inducible gibberel no no 0.784 0.689 0.336 2e-57
Q9S7H5413 Scarecrow-like protein 21 no no 0.753 0.871 0.335 1e-56
Q9ST59623 DELLA protein RHT-1 OS=Tr N/A no 0.767 0.589 0.316 6e-55
Q8H125597 Scarecrow-like protein 5 no no 0.755 0.604 0.317 5e-53
Q7G7J6625 DELLA protein SLR1 OS=Ory no no 0.753 0.576 0.310 6e-52
Q69VG1571 Chitin-inducible gibberel no no 0.780 0.653 0.307 1e-50
Q9ST48630 DELLA protein DWARF8 OS=Z N/A no 0.788 0.598 0.302 2e-49
>sp|Q9LPR8|SCL3_ARATH Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/485 (64%), Positives = 392/485 (80%), Gaps = 12/485 (2%)

Query: 1   MAGMVQED-GASSVSSSPLQFFSMMSLSP----AFGSPYPWLRELKSEERGLCLIHLLVA 55
           M  M QED G SSV+SSPLQ FS MSL+     A  SP+  L++LK EERGL LIHLL+ 
Sbjct: 1   MVAMFQEDNGTSSVASSPLQVFSTMSLNRPTLLASSSPFHCLKDLKPEERGLYLIHLLLT 60

Query: 56  CANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNST 115
           CANHVA+GS++NAN  LEQ+SHLASPDGDT+QRIAAYFTEALA+R+LK+WPGL+KALN+T
Sbjct: 61  CANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNAT 120

Query: 116 --KISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWIN 173
             + ++++EEI V++LFFE+ P LK+SY++TN+AI+EAMEGEKMVH+IDL++ EPAQW+ 
Sbjct: 121 QTRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLA 180

Query: 174 LLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLE 233
           LLQ  ++RPEGPPHLRITG+H QKEVLEQMA RL EEAEKLDIPFQFNP+VS+L+ +++E
Sbjct: 181 LLQAFNSRPEGPPHLRITGVHHQKEVLEQMAHRLIEEAEKLDIPFQFNPVVSRLDCLNVE 240

Query: 234 SLR-KTGEALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSS-HLQRVLHMNRRTLGEW 291
            LR KTGEALAVSSVLQ+H  LA+DD++ R+      + + S   LQRVL M+  +  E 
Sbjct: 241 QLRVKTGEALAVSSVLQLHTFLASDDDLMRKNCALRFQNNPSGVDLQRVLMMSHGSAAEA 300

Query: 292 LEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPS 351
            E D   M + +  S S  +++ L L +S +  SFLNA+W LSPKV+VVTEQ+S+HNG +
Sbjct: 301 REND---MSNNNGYSPSGDSASSLPLPSSGRTDSFLNAIWGLSPKVMVVTEQDSDHNGST 357

Query: 352 LMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKL 411
           LMER++E+L  YAA+FDCLE+ + R S +R KVEKMLFGEEIKNII+CEG ERRERHEKL
Sbjct: 358 LMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKL 417

Query: 412 EKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSA 471
           EKW  R++LAGFG +PLSY+ +LQARRLLQ  G+DGY+IKEE+GC VICWQDRPL+SVSA
Sbjct: 418 EKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSA 477

Query: 472 WRFRR 476
           WR R+
Sbjct: 478 WRCRK 482
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8W127|SLN1_HORVU DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description
>sp|Q9ST59|RHT1_WHEAT DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q7G7J6|SLR1_ORYSJ DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ST48|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
225449883478 PREDICTED: scarecrow-like protein 3 [Vit 0.997 0.997 0.849 0.0
147770941545 hypothetical protein VITISV_031083 [Viti 0.985 0.864 0.847 0.0
224057376476 GRAS family transcription factor [Populu 0.991 0.995 0.833 0.0
224072841476 GRAS family transcription factor [Populu 0.989 0.993 0.821 0.0
255544089474 transcription factor, putative [Ricinus 0.983 0.991 0.814 0.0
296081294435 unnamed protein product [Vitis vinifera] 0.907 0.997 0.787 0.0
307136399469 GRAS family transcription factor [Cucumi 0.972 0.991 0.769 0.0
449449322469 PREDICTED: scarecrow-like protein 3-like 0.972 0.991 0.758 0.0
449518473469 PREDICTED: LOW QUALITY PROTEIN: scarecro 0.972 0.991 0.756 0.0
359479301469 PREDICTED: scarecrow-like protein 3-like 0.976 0.995 0.745 0.0
>gi|225449883|ref|XP_002267910.1| PREDICTED: scarecrow-like protein 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/479 (84%), Positives = 448/479 (93%), Gaps = 2/479 (0%)

Query: 1   MAGMVQEDGASSVSSSPLQFFSMMSLSPAFGSPYPWLRELKSEERGLCLIHLLVACANHV 60
           MAGM+QEDG+SSV+SSPLQ FS+MSLSP  GSPYPWL+ELKSEERGL LI LLVACANHV
Sbjct: 1   MAGMIQEDGSSSVTSSPLQIFSLMSLSPGLGSPYPWLKELKSEERGLYLIRLLVACANHV 60

Query: 61  AAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKISSI 120
           AAGS+ENANIGLE ISHLASPDGDTVQRIAAYFTEALADRMLK WPGLHKALNSTKISSI
Sbjct: 61  AAGSIENANIGLEHISHLASPDGDTVQRIAAYFTEALADRMLKGWPGLHKALNSTKISSI 120

Query: 121 TEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSA 180
           +EEI+VQKLFFELCPFLKLSYVITNQAI+EAMEGEKMVHIIDLNSFE AQWINLLQ+LSA
Sbjct: 121 SEEILVQKLFFELCPFLKLSYVITNQAIIEAMEGEKMVHIIDLNSFESAQWINLLQSLSA 180

Query: 181 RPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLR-KTG 239
           RPEGPPHLRITGIHEQKEVL+ MAL+LT+EAEKLDIPFQFNPIVSKLEN+D ESLR KTG
Sbjct: 181 RPEGPPHLRITGIHEQKEVLDLMALQLTKEAEKLDIPFQFNPIVSKLENLDFESLRVKTG 240

Query: 240 EALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSSHLQRVLHMNRRTLGEWLEKDSVLM 299
           EALA+SSVLQ+H LLA DDEM  + SPSAS+ +S+ HLQRVL MN+RTLGEWLEKD   +
Sbjct: 241 EALAISSVLQLHTLLAIDDEMVGK-SPSASKNTSAVHLQRVLQMNQRTLGEWLEKDLPNV 299

Query: 300 FSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEA 359
           + PSP+SASAS ++PLSLA+SPKMGSFL ALW LSPK++VVTEQESN+N P+LMERVMEA
Sbjct: 300 YIPSPESASASTTSPLSLASSPKMGSFLAALWGLSPKLMVVTEQESNNNCPTLMERVMEA 359

Query: 360 LNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLE 419
           LNFYAA+FDCLEST+SRASIERQKVEKMLFGEEIKNIIACEG ER+ERHEKLEKW++RLE
Sbjct: 360 LNFYAALFDCLESTLSRASIERQKVEKMLFGEEIKNIIACEGPERKERHEKLEKWVMRLE 419

Query: 420 LAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRRYD 478
           LAGFGR+PLSY G+LQA RLL SYGYDGY++KEENGCLVICWQDRPLFSVSAWRF+RYD
Sbjct: 420 LAGFGRVPLSYQGMLQASRLLVSYGYDGYRMKEENGCLVICWQDRPLFSVSAWRFKRYD 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147770941|emb|CAN67001.1| hypothetical protein VITISV_031083 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224057376|ref|XP_002299218.1| GRAS family transcription factor [Populus trichocarpa] gi|222846476|gb|EEE84023.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224072841|ref|XP_002303907.1| GRAS family transcription factor [Populus trichocarpa] gi|222841339|gb|EEE78886.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255544089|ref|XP_002513107.1| transcription factor, putative [Ricinus communis] gi|223548118|gb|EEF49610.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296081294|emb|CBI17738.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|307136399|gb|ADN34209.1| GRAS family transcription factor [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449449322|ref|XP_004142414.1| PREDICTED: scarecrow-like protein 3-like isoform 1 [Cucumis sativus] gi|449449324|ref|XP_004142415.1| PREDICTED: scarecrow-like protein 3-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518473|ref|XP_004166266.1| PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479301|ref|XP_002266911.2| PREDICTED: scarecrow-like protein 3-like [Vitis vinifera] gi|147775853|emb|CAN60488.1| hypothetical protein VITISV_027673 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.989 0.981 0.612 1.2e-150
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.311 0.291 0.402 2.4e-60
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.435 0.318 0.402 6.1e-60
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.305 0.266 0.432 5.1e-59
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.418 0.484 0.349 9.9e-58
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.420 0.410 0.322 2.3e-57
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.430 0.350 0.339 4.1e-55
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.430 0.386 0.339 1.1e-54
TAIR|locus:2015243658 AT1G63100 "AT1G63100" [Arabido 0.441 0.320 0.339 8.8e-53
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.447 0.358 0.331 6.7e-52
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
 Identities = 297/485 (61%), Positives = 361/485 (74%)

Query:     1 MAGMVQED-GAXXXXXXPLQFFSMMSLS-P---AFGSPYPWLRELKSEERGLCLIHLLVA 55
             M  M QED G       PLQ FS MSL+ P   A  SP+  L++LK EERGL LIHLL+ 
Sbjct:     1 MVAMFQEDNGTSSVASSPLQVFSTMSLNRPTLLASSSPFHCLKDLKPEERGLYLIHLLLT 60

Query:    56 CANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNXX 115
             CANHVA+GS++NAN  LEQ+SHLASPDGDT+QRIAAYFTEALA+R+LK+WPGL+KALN  
Sbjct:    61 CANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNAT 120

Query:   116 XXXXXXXXXX--VQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWIN 173
                         V++LFFE+ P LK+SY++TN+AI+EAMEGEKMVH+IDL++ EPAQW+ 
Sbjct:   121 QTRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLA 180

Query:   174 LLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLE 233
             LLQ  ++RPEGPPHLRITG+H QKEVLEQMA RL EEAEKLDIPFQFNP+VS+L+ +++E
Sbjct:   181 LLQAFNSRPEGPPHLRITGVHHQKEVLEQMAHRLIEEAEKLDIPFQFNPVVSRLDCLNVE 240

Query:   234 SLR-KTGEALAVSSVLQMHRLLATDDE-MXXXXXXXXXXXXXXXHLQRVLHMNRRTLGEW 291
              LR KTGEALAVSSVLQ+H  LA+DD+ M                LQRVL M+  +  E 
Sbjct:   241 QLRVKTGEALAVSSVLQLHTFLASDDDLMRKNCALRFQNNPSGVDLQRVLMMSHGSAAEA 300

Query:   292 LEKDSVLMFXXXXXXXXXXXXXXXXXXXXXKMGSFLNALWSLSPKVVVVTEQESNHNGPS 351
              E D   M                      +  SFLNA+W LSPKV+VVTEQ+S+HNG +
Sbjct:   301 REND---MSNNNGYSPSGDSASSLPLPSSGRTDSFLNAIWGLSPKVMVVTEQDSDHNGST 357

Query:   352 LMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKL 411
             LMER++E+L  YAA+FDCLE+ + R S +R KVEKMLFGEEIKNII+CEG ERRERHEKL
Sbjct:   358 LMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKL 417

Query:   412 EKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVICWQDRPLFSVSA 471
             EKW  R++LAGFG +PLSY+ +LQARRLLQ  G+DGY+IKEE+GC VICWQDRPL+SVSA
Sbjct:   418 EKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSA 477

Query:   472 WRFRR 476
             WR R+
Sbjct:   478 WRCRK 482
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009739 "response to gibberellin stimulus" evidence=IEP
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015243 AT1G63100 "AT1G63100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LPR8SCL3_ARATHNo assigned EC number0.64120.98950.9813yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028614001
SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (478 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-143
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  414 bits (1067), Expect = e-143
 Identities = 180/433 (41%), Positives = 250/433 (57%), Gaps = 69/433 (15%)

Query: 49  LIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGL 108
           L+HLL+ACA  V++G +  A   L +++ LASP GD +QR+AAYFTEALA R+ ++   +
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 109 HKALNS--TKISSITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSF 166
           + AL    +  S   E +   KLF+E+ P+LK  +   NQAI+EA EGE+ VHIID +  
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 167 EPAQWINLLQTLSARPEGPPHLRITGIH----EQKEVLEQMALRLTEEAEKLDIPFQFNP 222
           +  QW +L+Q L++RP GPPHLRITGI        E LE+   RL + A+ L +PF+FNP
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 223 IVSK-LENVDLESLR-KTGEALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSSHLQRV 280
           +V+K LE++DLE L  + GEALAV+ V  +HRLL            S S  S        
Sbjct: 181 LVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDE----------SVSLESP-----TF 225

Query: 281 LHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVV 340
           L + +                                               L+PKVV +
Sbjct: 226 LRLVKS----------------------------------------------LNPKVVTL 239

Query: 341 TEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACE 400
            EQE+NHN    + R +EAL++Y+A+FD LE+T+ R S ER+KVE+ L G EI N++ACE
Sbjct: 240 VEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACE 299

Query: 401 GIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLLQSYGYDGYKIKEENGCLVIC 460
           G ER ERHE   KW  R+  AGF  +PLS   + QA+ LL+ Y  DGY+++E+NG LV+ 
Sbjct: 300 GAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSLVLG 359

Query: 461 WQDRPLFSVSAWR 473
           W+ RPL + SAWR
Sbjct: 360 WKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.68
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.39
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.15
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.98
PLN02233261 ubiquinone biosynthesis methyltransferase 94.54
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 93.66
PRK06202232 hypothetical protein; Provisional 93.6
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 93.52
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 92.63
PLN02336475 phosphoethanolamine N-methyltransferase 92.5
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 92.3
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 92.07
PRK08317241 hypothetical protein; Provisional 91.99
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 91.97
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 91.96
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 91.81
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 91.71
TIGR03438301 probable methyltransferase. This model represents 91.34
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 91.19
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 90.94
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 90.87
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 90.5
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 89.9
PRK11207197 tellurite resistance protein TehB; Provisional 89.77
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 89.3
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 89.13
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 88.01
PRK12335287 tellurite resistance protein TehB; Provisional 86.37
PRK05785226 hypothetical protein; Provisional 86.23
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 86.14
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 85.64
COG4106257 Tam Trans-aconitate methyltransferase [General fun 84.3
PLN02336 475 phosphoethanolamine N-methyltransferase 82.99
TIGR02081194 metW methionine biosynthesis protein MetW. This pr 81.32
PF0824299 Methyltransf_12: Methyltransferase domain; InterPr 80.85
PLN02585315 magnesium protoporphyrin IX methyltransferase 80.44
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-111  Score=872.96  Aligned_cols=366  Identities=49%  Similarity=0.821  Sum_probs=345.5

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHhhccCCCCCChhhhHHHHHHHHHHHHHhhcCcccccccccCCCC--CchHHHHH
Q 011736           49 LIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SITEEIIV  126 (478)
Q Consensus        49 L~~LL~~cA~Av~~g~~~~A~~~L~~L~~laS~~Gd~~qRlA~yF~eAL~~Rl~~~~~~~~~al~~~~~~--~~~~~~~a  126 (478)
                      |+|||++||+||++||.+.|+.+|++|++++||+|||+||||+||++||.+||.+.+++.|.++......  ...+.+.|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999988776543322  14566799


Q ss_pred             HHHHHhhcchhhhHHHHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecC----CHHHHHH
Q 011736          127 QKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQ  202 (478)
Q Consensus       127 ~~~f~~~~P~~kfa~~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~----~~~~L~~  202 (478)
                      ++.||++|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.    +.+.+++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999    7889999


Q ss_pred             HHHHHHHHHHhCCCceEEccc-ccccccCCccccC-CCCCeEEEEeccccccccCCCCCCcccCCCCCccCCcchhhHHH
Q 011736          203 MALRLTEEAEKLDIPFQFNPI-VSKLENVDLESLR-KTGEALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSSHLQRV  280 (478)
Q Consensus       203 tg~rL~~fA~~lgvpFeF~~V-~~~~e~l~~~~L~-~~gEalaVn~~~~Lh~Ll~~~de~~~~~~~~~~~~~~~~~~q~~  280 (478)
                      ||++|.+||+++||||+|++| ..++|++++++|+ ++||+|||||+++||||+..+.                      
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~----------------------  218 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESG----------------------  218 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccc----------------------
Confidence            999999999999999999995 5699999999999 9999999999999999963111                      


Q ss_pred             HhhccccchhhhhhcccccCCCCCCcccccCCCCcccCCCchHHHHHHHHHhcCCCEEEEEeecCCCCCCChHHHHHHHH
Q 011736          281 LHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEAL  360 (478)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~pd~s~~~~~~p~~~~~~~~~~~~L~~ir~L~P~vvvlvE~ea~hn~~~F~~RF~eaL  360 (478)
                                                           ....+++.||+.||+|+|+|||++|+|+|||+++|++||.|||
T Consensus       219 -------------------------------------~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal  261 (374)
T PF03514_consen  219 -------------------------------------ALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREAL  261 (374)
T ss_pred             -------------------------------------cccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence                                                 0123789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHhCCCccccCChhHHHHHHHHH
Q 011736          361 NFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLL  440 (478)
Q Consensus       361 ~yYsalfDsLda~l~~~~~eR~~iE~~~lg~eI~niVA~eG~~R~ERhE~~~~W~~rm~~aGF~~~~ls~~~~~qAk~LL  440 (478)
                      +||+++|||||+++|+++++|..+|+.+||+||+|||||||.+|+||||++++|+.||++|||+++|+|.+++.|||.||
T Consensus       262 ~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll  341 (374)
T PF03514_consen  262 HYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLL  341 (374)
T ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCcEEEecCCEEEEEECCceeEEEeeee
Q 011736          441 QSYGYDGYKIKEENGCLVICWQDRPLFSVSAWR  473 (478)
Q Consensus       441 ~~~~~~gy~v~~~~g~L~L~Wk~~pL~~~SaW~  473 (478)
                      +.|+++||+|.+++|||+||||++||+++||||
T Consensus       342 ~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  342 RKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             hccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999878999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR02081 metW methionine biosynthesis protein MetW Back     alignment and domain information
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 5e-10
 Identities = 70/514 (13%), Positives = 158/514 (30%), Gaps = 144/514 (28%)

Query: 34  YPWLRE-LKSEERGLCLIHLL-VACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAA 91
           Y +L   +K+E+R   ++  + +   +             L   + + +     V R+  
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDR------------LYNDNQVFAK--YNVSRLQP 136

Query: 92  YFTEALADRMLKAWPG----LHKALNSTKISSITEEI-----IVQKLFFELCPF-LKLSY 141
           Y    L   +L+  P     +   L S K + +  ++     +  K+ F++  F L L  
Sbjct: 137 Y--LKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKI--FWLNLKN 191

Query: 142 VITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLE 201
             + + ++E +  +K+++ ID N              ++R +   ++++  IH  +  L 
Sbjct: 192 CNSPETVLEML--QKLLYQIDPN-------------WTSRSDHSSNIKLR-IHSIQAELR 235

Query: 202 QMALRLTEEAEKLDIPFQFNPIVSKLENV-DLESLRKTGEALAVSSVLQMHRLLAT--DD 258
           ++ L+       L +          L NV + ++      A  +S      ++L T    
Sbjct: 236 RL-LKSKPYENCLLV----------LLNVQNAKAW----NAFNLSC-----KILLTTRFK 275

Query: 259 EMPRRTSPSASRTSSSSHLQRVLHM--NRRTLGEWLEKDSVLMFSPSPDSASASASTPLS 316
           ++    S + +   S  H    L     +  L ++L+        P         + P  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC------RPQDLPREVLTTNPRR 329

Query: 317 L---AASPK--------------------MGSFLNAL---------WSLS--PKVVVVTE 342
           L   A S +                    + S LN L           LS  P    +  
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 343 QESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGI 402
                    L+  +   +     M   +      + +E+Q  E  +    I   +  +  
Sbjct: 390 I--------LLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 403 ERRERHEKL-EKWILRLELAGFGRMP----------LSYH--GILQA------RRLLQSY 443
                H  + + + +         +P          + +H   I         R +   +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 444 GYDGYKIKEENGCLVICWQDRPLFSVSAWRFRRY 477
            +   KI+ ++                  + + Y
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQ----QLKFY 530
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.73
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.67
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.29
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 96.18
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.09
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.9
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.59
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.48
2r3s_A335 Uncharacterized protein; methyltransferase domain, 95.48
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 95.45
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.34
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 95.2
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 95.11
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 94.85
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 94.81
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.69
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.66
3hnr_A220 Probable methyltransferase BT9727_4108; structural 94.47
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 94.34
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 94.03
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.79
3f4k_A257 Putative methyltransferase; structural genomics, P 93.69
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.65
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 93.5
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 93.35
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 93.3
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 92.81
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.79
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 92.67
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 92.33
3m70_A286 Tellurite resistance protein TEHB homolog; structu 92.03
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 92.02
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 91.89
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 91.43
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 91.17
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 90.79
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 90.71
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 90.67
3gu3_A284 Methyltransferase; alpha-beta protein, structural 90.63
3ocj_A305 Putative exported protein; structural genomics, PS 90.6
3ege_A261 Putative methyltransferase from antibiotic biosyn 90.22
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 90.15
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 90.02
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 89.93
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 89.61
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 89.41
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 89.01
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 88.94
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 88.81
2p7i_A250 Hypothetical protein; putative methyltransferase, 88.76
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 88.33
3lcc_A235 Putative methyl chloride transferase; halide methy 88.24
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 87.78
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 87.43
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 86.83
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 86.71
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 86.65
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 86.39
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 86.19
1wzn_A252 SAM-dependent methyltransferase; structural genomi 86.05
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 86.05
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 85.72
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 84.89
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 84.67
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 84.62
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 84.5
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 83.99
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 83.87
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 83.83
3giw_A277 Protein of unknown function DUF574; rossmann-fold 83.35
3iv6_A261 Putative Zn-dependent alcohol dehydrogenase; alpha 83.32
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 83.1
3i9f_A170 Putative type 11 methyltransferase; structural gen 82.38
4hg2_A257 Methyltransferase type 11; structural genomics, PS 82.3
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 81.87
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 81.74
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 81.25
1vlm_A219 SAM-dependent methyltransferase; possible histamin 81.19
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 80.6
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 80.31
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 80.3
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.73  E-value=0.0002  Score=69.76  Aligned_cols=82  Identities=13%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCccccC
Q 011736          157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLR  236 (478)
Q Consensus       157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~  236 (478)
                      .-+|+|+|.|.|.    +...|+.+- +.|..+||||+.+.+.++.+.+++.++-  .+.+++|.  ...++++...   
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~--~~D~~~~~~~---  138 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI--EGDIRDIAIE---  138 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEE--ESCTTTCCCC---
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEe--eccccccccc---
Confidence            3479999999995    444455442 3466899999999999998888776431  22344443  2334443322   


Q ss_pred             CCCCeEEEEeccccccc
Q 011736          237 KTGEALAVSSVLQMHRL  253 (478)
Q Consensus       237 ~~gEalaVn~~~~Lh~L  253 (478)
                       +  +=+|.|.+.||++
T Consensus       139 -~--~d~v~~~~~l~~~  152 (261)
T 4gek_A          139 -N--ASMVVLNFTLQFL  152 (261)
T ss_dssp             -S--EEEEEEESCGGGS
T ss_pred             -c--cccceeeeeeeec
Confidence             2  2345566778988
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.56
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.87
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.76
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.38
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 96.24
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.62
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.4
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 95.11
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 95.02
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 94.9
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 94.74
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.46
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 94.1
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 93.63
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 93.21
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 93.18
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 92.71
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 92.51
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 90.71
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 88.7
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 84.99
d1p91a_268 rRNA methyltransferase RlmA {Escherichia coli [Tax 84.8
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 83.77
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 82.01
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.56  E-value=0.0005  Score=62.26  Aligned_cols=83  Identities=14%  Similarity=0.247  Sum_probs=52.8

Q ss_pred             ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCcccc
Q 011736          156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESL  235 (478)
Q Consensus       156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L  235 (478)
                      +.-||+|+|.|.|.-=..|.+.+     ..|..+||||+.+.+.++.+.+++.+    .+....++.+.....++     
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~-----~~~~~~v~giD~S~~ml~~A~~~~~~----~~~~~~~~~~~~d~~~~-----  104 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNI-----NQPNVKIIGIDNSQPMVERCRQHIAA----YHSEIPVEILCNDIRHV-----  104 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTC-----CCSSCEEEEECSCHHHHHHHHHHHHT----SCCSSCEEEECSCTTTC-----
T ss_pred             CCCEEEEeccchhhHHHHHHHhh-----cCCCCceEEeCCCHHHHHHHHHHhHh----hcccchhhhccchhhcc-----
Confidence            44589999999885433333322     24679999999999999988887763    33333333322222222     


Q ss_pred             CCCCCeEEEEeccccccc
Q 011736          236 RKTGEALAVSSVLQMHRL  253 (478)
Q Consensus       236 ~~~gEalaVn~~~~Lh~L  253 (478)
                       ..++.-+|.|.+.||++
T Consensus       105 -~~~~~d~i~~~~~l~~~  121 (225)
T d1im8a_         105 -EIKNASMVILNFTLQFL  121 (225)
T ss_dssp             -CCCSEEEEEEESCGGGS
T ss_pred             -ccccceeeEEeeecccc
Confidence             22344567788889997
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure