Citrus Sinensis ID: 011741

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MSLVTSKNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
cccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccEEEEccccccccccHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHEEcccEEcccccccccccccc
ccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHEHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccc
mslvtsknseekcllyagpaslVWGWVVVSFFTWFVGLAMAEIcssfpttgsLYFWAAhlaspkwgpfasWCCAWLETIGLIAGmgtqayagsQTLQSIILLCtgtnkdggyfapKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFThfemspeatgisskpYAVILSFLVSQyslygydsaahlteetkgadktgpiaiLSSIGIISIFGWALILALCFSIQDFsylydksnetagafvpaQILYDafhgryhnsTGAIILLIVIWGSfffgglsvtTSAARVVYALSrdkgipfssiwrqlhpkhkvpsnAVWLCAAICIIlglpilkvNVVFTAITSICtigwvggyavPIFARMVMAEQkfnagpfylgkasrpiCLIAFLWICYTCsvfllptfypiswdtfnyapvALGVGLGLIMLWWLLDArkwftgpvrnidnengkv
mslvtsknseeKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKwftgpvrnidnengkv
MSLVTSKNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPiailssigiisiFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
***********KCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVR*********
MSLVTSKNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTG************
*********EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
MSLVTSKNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPV**********
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLVTSKNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
B9EXZ6520 Amino-acid permease BAT1 no no 0.953 0.876 0.431 3e-94
Q9ZU50516 Amino-acid permease BAT1 yes no 0.951 0.881 0.408 3e-90
Q9C0Z0543 Uncharacterized amino-aci yes no 0.933 0.821 0.292 1e-42
O60113542 Uncharacterized amino-aci no no 0.926 0.817 0.278 2e-41
Q10087550 Uncharacterized amino-aci no no 0.910 0.790 0.295 2e-40
Q09887544 Uncharacterized amino-aci no no 0.920 0.808 0.269 1e-38
O59942541 Amino-acid permease 2 OS= N/A no 0.907 0.802 0.269 7e-37
Q9US40567 Uncharacterized amino-aci no no 0.903 0.761 0.264 1e-36
O74537557 Uncharacterized amino-aci no no 0.910 0.780 0.243 2e-36
P32837571 GABA-specific permease OS yes no 0.851 0.712 0.281 3e-36
>sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  346 bits (887), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 198/459 (43%), Positives = 281/459 (61%), Gaps = 3/459 (0%)

Query: 14  LLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCC 73
           L + GPA++ +GW V   FT  VGL+MAEICSSFPT+G LY+W+A L+  +W PFASW  
Sbjct: 64  LSFGGPATMTFGWFVAGAFTMTVGLSMAEICSSFPTSGGLYYWSARLSGKRWAPFASWIT 123

Query: 74  AWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVL 133
            W   +G  A   +  ++ +Q +Q IILL TG N  GGY A K++ +  +  + +  A +
Sbjct: 124 GWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGNNGGGYMASKYVVIAFHAAILLSHAAI 183

Query: 134 NTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 193
           N+  +  ++F    +  W + G  V++I +P VA    SA +VFTHF     A GI S  
Sbjct: 184 NSLPITWLSFFGQFAAAWNMLGVFVLMIAVPTVATERASAKFVFTHFNTENNA-GIHSNF 242

Query: 194 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 253
           Y  +L  L+SQY+L GYD++AH+TEETK AD+ GPI I+S+IGI  I GW  IL + F++
Sbjct: 243 YIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPIGIISAIGISIIVGWGYILGITFAV 302

Query: 254 QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAA 313
           +D  YL +  N+ AG +  A++ Y AF  RY +  G II L ++  + +F G+S  TS +
Sbjct: 303 KDIPYLLNPEND-AGGYAIAEVFYLAFKSRYGSGIGGIICLGIVAVAIYFCGMSSVTSNS 361

Query: 314 RVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSIC 373
           R+ YA SRD  +P SS+W +++ KH+VP NAVWL A I + + LP L   V F A+ SI 
Sbjct: 362 RMAYAFSRDGAMPLSSVWHKVN-KHEVPINAVWLSALISLCMALPSLGSLVAFQAMVSIA 420

Query: 374 TIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPI 433
           TIG    YA+PI  R+ +A + F  GPF LG+    +   A LW+     +F LP  YP+
Sbjct: 421 TIGLYVAYALPILFRVTLARKHFVPGPFNLGRCGVAVGWAAVLWVATITVLFSLPVSYPV 480

Query: 434 SWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNID 472
           + DT NY PVA+G    L++  WLL AR WF GP+ N+D
Sbjct: 481 TKDTLNYTPVAVGGLFLLVLSSWLLSARHWFKGPITNLD 519
May be involved in the transport of amino acids.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9ZU50|BAT1_ARATH Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 Back     alignment and function description
>sp|Q9C0Z0|YKM2_SCHPO Uncharacterized amino-acid permease PB24D3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.02c PE=3 SV=1 Back     alignment and function description
>sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 Back     alignment and function description
>sp|Q10087|YAO8_SCHPO Uncharacterized amino-acid permease C11D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.08c PE=3 SV=1 Back     alignment and function description
>sp|Q09887|YC9D_SCHPO Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1 Back     alignment and function description
>sp|O59942|AAP2_NEUCR Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9US40|YFZ1_SCHPO Uncharacterized amino-acid permease C1039.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.01 PE=3 SV=1 Back     alignment and function description
>sp|O74537|YCQ4_SCHPO Uncharacterized amino-acid permease C74.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC74.04 PE=3 SV=1 Back     alignment and function description
>sp|P32837|UGA4_YEAST GABA-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
224093575538 amino acid transporter [Populus trichoca 0.972 0.864 0.859 0.0
357464761528 Amino-acid permease, putative [Medicago 0.972 0.880 0.877 0.0
356507445527 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.972 0.882 0.854 0.0
356518789542 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.972 0.857 0.845 0.0
225438400512 PREDICTED: uncharacterized amino-acid pe 0.972 0.908 0.890 0.0
296082588522 unnamed protein product [Vitis vinifera] 0.972 0.890 0.890 0.0
147773952512 hypothetical protein VITISV_000645 [Viti 0.972 0.908 0.890 0.0
242073140525 hypothetical protein SORBIDRAFT_06g01710 0.966 0.88 0.846 0.0
413918355525 amino acid permease [Zea mays] 0.972 0.885 0.830 0.0
226498468525 amino acid permease [Zea mays] gi|195616 0.970 0.883 0.830 0.0
>gi|224093575|ref|XP_002309938.1| amino acid transporter [Populus trichocarpa] gi|222852841|gb|EEE90388.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/478 (85%), Positives = 444/478 (92%), Gaps = 13/478 (2%)

Query: 14  LLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCC 73
           LLYAGPASLVWGWVVVSFFTWFVG+AMAEICSSFPTTGSLYFWAAHLA P+WGPFASWCC
Sbjct: 61  LLYAGPASLVWGWVVVSFFTWFVGIAMAEICSSFPTTGSLYFWAAHLAGPRWGPFASWCC 120

Query: 74  AWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVL 133
           AWLETIGL+AG+GTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLT+IWAVL
Sbjct: 121 AWLETIGLVAGIGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTLIWAVL 180

Query: 134 NTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 193
           NTFALEVIAFID+IS+WWQV GGLVI+IMLPLV+LTTQSASYVFTHFE +P++TGISSKP
Sbjct: 181 NTFALEVIAFIDVISIWWQVIGGLVIVIMLPLVSLTTQSASYVFTHFETAPDSTGISSKP 240

Query: 194 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 253
           Y V+LSFLVSQYSLYGYD+AAHLTEETKGADK GPIAILSSIGII++FGWA ILAL FSI
Sbjct: 241 YVVVLSFLVSQYSLYGYDAAAHLTEETKGADKNGPIAILSSIGIITVFGWAYILALTFSI 300

Query: 254 Q-------------DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGS 300
           Q             DF YLYD SNETAGAFVPAQILYDAF GRYHNS GAI+LL +IWGS
Sbjct: 301 QVCLASRTTALLIPDFGYLYDPSNETAGAFVPAQILYDAFQGRYHNSAGAIVLLFIIWGS 360

Query: 301 FFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL 360
           FFFGGLS+TTSAARVVYALSRD+GIPFSSIWR++HPKHKVPSNAVWLCAAICI+LGLPIL
Sbjct: 361 FFFGGLSITTSAARVVYALSRDEGIPFSSIWRKIHPKHKVPSNAVWLCAAICILLGLPIL 420

Query: 361 KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICY 420
           KVNVVFTAITSICTIGWVGGYAVPIFAR+VM E+ F AGPFYLG+A RP+C+IAFLWICY
Sbjct: 421 KVNVVFTAITSICTIGWVGGYAVPIFARIVMDEKNFKAGPFYLGRARRPVCIIAFLWICY 480

Query: 421 TCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV 478
           TCSVFLLPT+YP+SW+TFNYAPVA+GVGL  IMLWW+LDARKWF GPVRNID  NGKV
Sbjct: 481 TCSVFLLPTYYPLSWNTFNYAPVAIGVGLSSIMLWWMLDARKWFKGPVRNIDISNGKV 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357464761|ref|XP_003602662.1| Amino-acid permease, putative [Medicago truncatula] gi|358348396|ref|XP_003638233.1| Amino-acid permease, putative [Medicago truncatula] gi|355491710|gb|AES72913.1| Amino-acid permease, putative [Medicago truncatula] gi|355504168|gb|AES85371.1| Amino-acid permease, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|356507445|ref|XP_003522477.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|356518789|ref|XP_003528060.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|225438400|ref|XP_002274762.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082588|emb|CBI21593.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147773952|emb|CAN60789.1| hypothetical protein VITISV_000645 [Vitis vinifera] Back     alignment and taxonomy information
>gi|242073140|ref|XP_002446506.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor] gi|241937689|gb|EES10834.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413918355|gb|AFW58287.1| amino acid permease [Zea mays] Back     alignment and taxonomy information
>gi|226498468|ref|NP_001148156.1| amino acid permease [Zea mays] gi|195616234|gb|ACG29947.1| amino acid permease [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2038811516 BAT1 "AT2G01170" [Arabidopsis 0.951 0.881 0.397 5.5e-93
ASPGD|ASPL0000060974530 AN1061 [Emericella nidulans (t 0.907 0.818 0.275 6.7e-49
ASPGD|ASPL0000007717570 AN5968 [Emericella nidulans (t 0.918 0.770 0.280 6.7e-49
ASPGD|ASPL0000069282544 AN10905 [Emericella nidulans ( 0.935 0.821 0.308 2.3e-46
POMBASE|SPBC15C4.04c542 SPBC15C4.04c "amino acid perme 0.924 0.815 0.277 6.2e-46
UNIPROTKB|G4NFY0512 MGG_08670 "Choline transporter 0.887 0.828 0.280 1.5e-44
POMBASE|SPCC584.13544 SPCC584.13 "amino acid permeas 0.907 0.797 0.286 1e-43
SGD|S000002369571 UGA4 "GABA (gamma-aminobutyrat 0.922 0.772 0.266 8.4e-42
POMBASE|SPAC1039.01567 SPAC1039.01 "amino acid permea 0.912 0.768 0.262 9.6e-41
ASPGD|ASPL0000048361553 AN2287 [Emericella nidulans (t 0.397 0.343 0.335 1.7e-39
TAIR|locus:2038811 BAT1 "AT2G01170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 182/458 (39%), Positives = 271/458 (59%)

Query:    14 LLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCC 73
             L + G  +LV+GW +   FT  VGL+MAEICSS+PT+G LY+W+A LA P+W P ASW  
Sbjct:    60 LRFGGTVTLVYGWFLAGSFTMCVGLSMAEICSSYPTSGGLYYWSAMLAGPRWAPLASWMT 119

Query:    74 AWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVL 133
              W   +G  A   +  ++ +Q +Q I+LL TG    GGY    ++ + ++ G+  I A+L
Sbjct:   120 GWFNIVGQWAVTASVDFSLAQLIQVIVLLSTGGRNGGGYKGSDFVVIGIHGGILFIHALL 179

Query:   134 NTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 193
             N+  + V++FI  ++  W + G LV++I++PLV+    +  +VFT+F  +    GI+S  
Sbjct:   180 NSLPISVLSFIGQLAALWNLLGVLVLMILIPLVSTERATTKFVFTNFN-TDNGLGITSYA 238

Query:   194 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPXXXXXXXXXXXXFGWALILALCFSI 253
             Y  +L  L+SQY++ GYD++AH+TEET  ADK GP            FGW  IL + +++
Sbjct:   239 YIFVLGLLMSQYTITGYDASAHMTEETVDADKNGPRGIISAIGISILFGWGYILGISYAV 298

Query:   254 QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAA 313
              D   L  ++N + G +  A+I Y AF  R+ + TG I+ L V+  + FF G+S  TS +
Sbjct:   299 TDIPSLLSETNNSGG-YAIAEIFYLAFKNRFGSGTGGIVCLGVVAVAVFFCGMSSVTSNS 357

Query:   314 RVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSIC 373
             R+ YA SRD  +P S +W +++ + +VP NAVWL A I   + L  L   V F A+ SI 
Sbjct:   358 RMAYAFSRDGAMPMSPLWHKVNSR-EVPINAVWLSALISFCMALTSLGSIVAFQAMVSIA 416

Query:   374 TIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPI 433
             TIG    YA+PI  R+ +A   F  GPF LGK    +  +A LW+     +F LP  YPI
Sbjct:   417 TIGLYIAYAIPIILRVTLARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPI 476

Query:   434 SWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNI 471
             + +T NY PVA+   + + + +WL  AR WFTGP+ NI
Sbjct:   477 TAETLNYTPVAVAGLVAITLSYWLFSARHWFTGPISNI 514
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IDA
GO:0015180 "L-alanine transmembrane transporter activity" evidence=IDA
GO:0015181 "arginine transmembrane transporter activity" evidence=IDA
GO:0015189 "L-lysine transmembrane transporter activity" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IMP
GO:0015812 "gamma-aminobutyric acid transport" evidence=IMP
ASPGD|ASPL0000060974 AN1061 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007717 AN5968 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069282 AN10905 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBC15C4.04c SPBC15C4.04c "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4NFY0 MGG_08670 "Choline transporter" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCC584.13 SPCC584.13 "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000002369 UGA4 "GABA (gamma-aminobutyrate) permease" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAC1039.01 SPAC1039.01 "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000048361 AN2287 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZU50BAT1_ARATHNo assigned EC number0.40820.95180.8817yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070456
amino acid transporter (538 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 1e-101
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 3e-42
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 1e-31
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 1e-22
pfam00324473 pfam00324, AA_permease, Amino acid permease 8e-16
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 8e-10
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 4e-05
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 0.002
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information 
 Score =  311 bits (798), Expect = e-101
 Identities = 149/456 (32%), Positives = 237/456 (51%), Gaps = 16/456 (3%)

Query: 14  LLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCC 73
           L   G  S+VWGW++    +  + L++AE+ S++PT+G  YFW+A LA P+  PFASW  
Sbjct: 41  LSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMT 100

Query: 74  AWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPK-WLFLCMYIGLTIIWAV 132
            W    G +AG  +   + +Q +  I+ L T     G  + P  W    + IG+ +I A+
Sbjct: 101 GWFNLAGQVAGTASTDLSVAQLILGIVSLTT----PGREYIPTRWHIFGIMIGIHLIHAL 156

Query: 133 LNTFALEVIAFIDIISMWWQVAGGLVI-IIMLPLVALTTQSASYVFTHFEMSPEATGISS 191
           +N+   + +  I   + +W + G L I I +L   +       +VFT+F       G   
Sbjct: 157 INSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFN--NSTGGWKP 214

Query: 192 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCF 251
             +A +L  L   +S+ GYD  AH+ EE +  +  GP AI+ ++ I  + G+   + L F
Sbjct: 215 GGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFF 274

Query: 252 SIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTS 311
           S+ D   L    + T G  + AQI Y+A      N  GAI LL +I  + FF  ++  T+
Sbjct: 275 SMGDIDSLI---SSTTGQPI-AQIFYNALG----NKAGAIFLLCLILVTSFFCAITCMTA 326

Query: 312 AARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITS 371
            +R++YA SRD G+PFS +W +++P+ +VP NAVWL A   I++GL  L  +  F AI S
Sbjct: 327 NSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFS 386

Query: 372 ICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFY 431
           +CT+     Y +PI  ++         GPF+LGK    +  +A  W  ++  +F  P   
Sbjct: 387 VCTVALDVSYVIPIICKLAKGRNTIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVL 446

Query: 432 PISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP 467
           P++ +  NYA V     L + +++W    RK FTGP
Sbjct: 447 PVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP 482

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.94
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.93
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.9
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.8
PHA02764399 hypothetical protein; Provisional 99.78
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.76
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.75
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.71
PRK10483414 tryptophan permease; Provisional 99.68
PRK15132403 tyrosine transporter TyrP; Provisional 99.67
PRK09664415 tryptophan permease TnaB; Provisional 99.63
TIGR00814397 stp serine transporter. The HAAAP family includes 99.63
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.47
PRK13629443 threonine/serine transporter TdcC; Provisional 99.45
PF03845320 Spore_permease: Spore germination protein; InterPr 98.93
KOG1303437 consensus Amino acid transporters [Amino acid tran 98.92
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.64
PRK11375484 allantoin permease; Provisional 98.55
PTZ00206467 amino acid transporter; Provisional 98.5
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 98.42
PLN03074473 auxin influx permease; Provisional 98.41
KOG1304449 consensus Amino acid transporters [Amino acid tran 98.3
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.27
COG3949349 Uncharacterized membrane protein [Function unknown 98.2
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.16
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.12
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.1
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.92
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.9
PRK15433439 branched-chain amino acid transport system 2 carri 97.74
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.71
COG1457442 CodB Purine-cytosine permease and related proteins 97.55
TIGR00813407 sss transporter, SSS family. have different number 97.54
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.47
KOG1305411 consensus Amino acid transporter protein [Amino ac 97.46
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.22
PRK00701439 manganese transport protein MntH; Reviewed 97.13
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.06
PRK12488549 acetate permease; Provisional 96.86
PRK11017404 codB cytosine permease; Provisional 96.85
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.83
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.61
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 96.6
COG0591493 PutP Na+/proline symporter [Amino acid transport a 96.59
PRK09395551 actP acetate permease; Provisional 96.53
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 96.51
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.28
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 96.09
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.97
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 95.89
PRK09950506 putative transporter; Provisional 95.72
PLN00149 779 potassium transporter; Provisional 95.59
PRK10745 622 trkD potassium transport protein Kup; Provisional 95.59
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 95.51
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.44
PRK10484523 putative transporter; Provisional 95.07
PLN00148 785 potassium transporter; Provisional 95.05
PLN00150 779 potassium ion transporter family protein; Provisio 95.0
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 94.97
PLN00151 852 potassium transporter; Provisional 94.85
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 94.81
PRK15419502 proline:sodium symporter PutP; Provisional 93.14
PF1390651 AA_permease_C: C-terminus of AA_permease 92.41
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 92.27
PRK09928679 choline transport protein BetT; Provisional 92.06
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 92.01
TIGR00842453 bcct choline/carnitine/betaine transport. properti 88.98
COG1292537 BetT Choline-glycine betaine transporter [Cell env 80.35
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-59  Score=455.76  Aligned_cols=457  Identities=37%  Similarity=0.713  Sum_probs=417.2

Q ss_pred             CCcccCc-chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHH
Q 011741            1 MSLVTSK-NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETI   79 (478)
Q Consensus         1 ~~~~~~~-~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~   79 (478)
                      |+++++. .++..++..+||.+++|+|++++++.++.+++++|+++.+|++||.|.|+....+|+++++.+|++||...+
T Consensus        63 ~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~  142 (550)
T KOG1289|consen   63 MGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYL  142 (550)
T ss_pred             hcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence            4455544 356788888898889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 011741           80 GLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVI  159 (478)
Q Consensus        80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~  159 (478)
                      ++....++..+..++.+.......+     +++.++.++...+..++.++..++|..+.|...|++.+.+.+.++.+++.
T Consensus       143 g~~~~~aSi~~S~A~~i~~~v~l~n-----p~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~  217 (550)
T KOG1289|consen  143 GQATGVASITYSLAQLILGAVSLTN-----PNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVIL  217 (550)
T ss_pred             HHHhhchhhhHHHHHHHHHHHhhcC-----CCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888765     78888899999999999999999999999999999999999999999988


Q ss_pred             hhhhheecccc---cccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHH
Q 011741          160 IIMLPLVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIG  236 (478)
Q Consensus       160 ~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~  236 (478)
                      .|.......++   ++.+..|.++   +|.+||++.++++..++....|.+.|+|+++|++||+|||+|+.||+|+.++.
T Consensus       218 ~I~lla~~~~k~gFns~~~iF~~f---~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~  294 (550)
T KOG1289|consen  218 MITLLAASSKKTGFNSGSFIFGKF---NNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIA  294 (550)
T ss_pred             HHHhhhccCCCCCCCCCceeeecc---cccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHH
Confidence            88777654332   4566678888   78999998999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc-ChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741          237 IISIFGWALILALCFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARV  315 (478)
Q Consensus       237 ~~~~~y~l~~~~~~~~~~-~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~  315 (478)
                      +..+...+..+.+...++ |.+.+.++..   |+| +.+.+.+..++.     ....+..+.++..+.+..+.+.+.||+
T Consensus       295 i~~i~gw~~~I~i~~~i~~D~~~v~ns~~---g~p-~~~i~~~~lg~k-----~~v~~~~l~ii~~f~~gi~s~~a~SR~  365 (550)
T KOG1289|consen  295 IGFILGWIIIIGIAYTIPDDLDAVLNSSL---GQP-IVQIYYQALGKK-----GAVFLLSLIIIALFFMGISSLTASSRL  365 (550)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHhcCCC---CCh-HHHHHHHhcCCC-----ceEehhHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999996 5566666555   789 888888888765     446777888888999999999999999


Q ss_pred             HHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011741          316 VYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK  395 (478)
Q Consensus       316 l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  395 (478)
                      .|+.||||.+|++++++|+||++|+|.+|+++..+++.++.++...+..+++.+.+.+....++.|..+.++.+..+|++
T Consensus       366 v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~  445 (550)
T KOG1289|consen  366 VYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDD  445 (550)
T ss_pred             HhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccc
Confidence            99999999999999999999888999999999999999999988888899999999999999999999999888887777


Q ss_pred             CCCCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceeeeCCccccCCC
Q 011741          396 FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNE  474 (478)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (478)
                      .+++||+.+|.+.+++++++++.++++++..+|...|.+.+++||+.++.+..++++.++|+..+||..++|+.+.++|
T Consensus       446 f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~k~f~gP~~~~~~~  524 (550)
T KOG1289|consen  446 FRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSARKWFKGPIPSVLEE  524 (550)
T ss_pred             cCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecceeecCCccccccc
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999998877665

>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-21
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 5e-16
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 2e-10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score = 94.9 bits (236), Expect = 5e-21
 Identities = 59/445 (13%), Positives = 147/445 (33%), Gaps = 31/445 (6%)

Query: 16  YAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-TGSLYFWAAHLASPKWGPFASWCCA 74
            +G + + +  +    +   VGL  AE+ +      G ++ W ++   P+WG    +   
Sbjct: 37  TSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWG----FAAI 92

Query: 75  WLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLN 134
               + +  G     Y     L  I+       K               + +    A+  
Sbjct: 93  SFGYLQIAIGFIPMLYFVLGALSYIL-------KWPALNEDPITKTIAALIILWALALTQ 145

Query: 135 TFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 194
               +  A I  +  +  +     I+I L  + L + +        EM  +         
Sbjct: 146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPV----AIEMDSKTFFPDFSKV 201

Query: 195 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ 254
             ++ F+    S  G +++A    E     +  P+A+L  +           L++   I 
Sbjct: 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIP 261

Query: 255 DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAAR 314
                 ++ N +AG      +L          +   I  L+++         S     +R
Sbjct: 262 -----GNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLL--GVLAEIASWIVGPSR 314

Query: 315 VVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL----KVNVVFTAIT 370
            +Y  ++   +P  + + +++ K+ VP   V     I  I  + +       N+ F    
Sbjct: 315 GMYVTAQKNLLP--AAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIAL 371

Query: 371 SICTIGWVGGYAVPIFARMVMAEQKFNAG-PFYLGKASRPICLIAFLWICYTCSVFLLPT 429
           ++  + ++  Y +     +V+  +  +    F +        ++A + +  +   F++  
Sbjct: 372 ALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSF 431

Query: 430 FYPISWDTFNYAPVALGVGLGLIML 454
             P +    +       + +  +++
Sbjct: 432 LPPDNIQGDSTDMYVELLVVSFLVV 456
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.46
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.82
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.32
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 96.9
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 85.05
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
Probab=100.00  E-value=6.9e-48  Score=400.78  Aligned_cols=413  Identities=14%  Similarity=0.113  Sum_probs=314.9

Q ss_pred             hhccCcchhHHHHHHHHHH-HHHHHHHHHHHhh--hcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 011741           14 LLYAGPASLVWGWVVVSFF-TWFVGLAMAEICS--SFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAY   90 (478)
Q Consensus        14 ~~~~G~~~~~l~~li~~~~-~~~~a~~~~el~~--~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~   90 (478)
                      .+.+||. .++.+++++++ .++.+++|+|+++  ++| +||.|.|++|.+||+    .||+++|.+|+++....+....
T Consensus        35 ~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~~g~~----~g~~~g~~~~~~~~~~~~~~~~  108 (511)
T 4djk_A           35 FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNTLGPR----WGFAAISFGYLQIAIGFIPMLY  108 (511)
T ss_dssp             HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHHHCHH----HHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhhcCch----HHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888 66666666665 4679999999999  999 999999999997666    5999999999999988888877


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHhhhhhheeccc
Q 011741           91 AGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAG-GLVIIIMLPLVALT  169 (478)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~-~~~~~i~~~~~~~~  169 (478)
                      ....++...+.       .+++..++|...+++++++++.+.+|++|.|..++++++.+.++++. ++++++.++.....
T Consensus       109 ~~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  181 (511)
T 4djk_A          109 FVLGALSYILK-------WPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHS  181 (511)
T ss_dssp             HHHHHHHTTTT-------CGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhc-------CcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777754421       13555667888889999999999999999999999999998886554 44444444432211


Q ss_pred             ccccc--cccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741          170 TQSAS--YVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL  247 (478)
Q Consensus       170 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~  247 (478)
                      .++.+  .+.+++   .+.  +.  ..+.+.++...+|+|.|+|++++++||+|||+|++||+++.++.++.++|++..+
T Consensus       182 ~~~~~~~~~~~~~---~~~--~~--~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~  254 (511)
T 4djk_A          182 GAPVAIEMDSKTF---FPD--FS--KVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGL  254 (511)
T ss_dssp             -----------CC---CCC--TT--STTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCccccc---CCC--cc--cchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence            11111  112222   011  11  0123345667789999999999999999999999999999999999999999999


Q ss_pred             HHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccC--CchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Q 011741          248 ALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYH--NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI  325 (478)
Q Consensus       248 ~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l  325 (478)
                      +....+ |.+++..++      + ..+.+....+.. |  .++...++.+..+++.+++.++.+.+.+|++++|||||.+
T Consensus       255 ~~~~~~-~~~~~~~~~------~-~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l  325 (511)
T 4djk_A          255 SIAMVI-PGNEINLSA------G-VMQTFTVLMSHV-APEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLL  325 (511)
T ss_dssp             HHHTTS-CTTSCCSSS------T-HHHHHHHHHSSS-CSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGC
T ss_pred             HHHeec-CHhhccccc------h-HHHHHHHHHHHh-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            999988 666554332      2 445565655443 6  5567888899999999999999999999999999999999


Q ss_pred             cccccccccccCCCChHHHHHHHHHHHHHHHcccccc-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCCCC
Q 011741          326 PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV-----NVVFTAITSICTIGWVGGYAVPIFA-RMVMAEQKFNAG  399 (478)
Q Consensus       326 P~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~  399 (478)
                      |  ++|+|+| |+++|++|++++..+..+..+. .++     .+.++.+.++++...++.|.++..+ ..+|||+++.+|
T Consensus       326 P--~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~  401 (511)
T 4djk_A          326 P--AAFAKMN-KNGVPVTLVISQLVITSIALII-LTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKR  401 (511)
T ss_dssp             S--SSCCCCC-SSSCCCHHHHHHHHHHHHHHHH-HHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred             c--HHHHhcC-CCCCcHHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9  9999999 6799999999995544433322 233     5679999999999999999997654 444556667789


Q ss_pred             CcccC--Cch-hhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcc
Q 011741          400 PFYLG--KAS-RPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLD  459 (478)
Q Consensus       400 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (478)
                      |||.|  +++ +.+++++.+++++.++...+|...+.+.++++|.....+.++++..++|+.+
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  464 (511)
T 4djk_A          402 TFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILY  464 (511)
T ss_dssp             SCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99997  444 5688999999999999999998888888888998888888888777777763
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.26
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.26  E-value=0.097  Score=50.83  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=23.0

Q ss_pred             HHHHHHHhhhhhh-hccchhhhhhhhhcCcccccchHHH
Q 011741          195 AVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAIL  232 (478)
Q Consensus       195 ~~~~~~~~~~~af-~G~e~~~~~~~E~k~p~k~ip~ai~  232 (478)
                      ....+..-++|++ .|+.....+++-.|+ +.|+.|--+
T Consensus       239 vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~  276 (509)
T d2a65a1         239 VWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGL  276 (509)
T ss_dssp             HHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHH
T ss_pred             HHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccce
Confidence            3455666677776 677777777776665 445555433