Citrus Sinensis ID: 011743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MGDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLATS
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHcccccccccccccEEHccEEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgdkvagikqkggfraCTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYskslhppdcgkssclKGAIAAYFYGSLYLYslgcggnrgtlpalgagqfdendpkGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAigkpfyriqqpgesplvRVAQVIVVAIKnrklslpdnpeelyeinkiervgteeriphtnqfrcldkaaivpkdstaaapwrvctVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVtqgaymdprlgsikvptpsipvlpLLFMAILIPiyeflfvpfarkitghpagitqLQRVGVGLVLSVISMTIAGFVEVkrrnafnqsppkqISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLATS
Flexible Loop (DISEMBL)
mgdkvagikqkggfraCTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIknrklslpdnpeelYEINKiervgteeriphtnqfrcldkaaivpkdstaaapwrvctvTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLATS
Low Complexity Region (SEG)
MGDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAyfygslylyslgcggNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTlllhlhfchchlATS
Disordered region (IsUnstruct)
*******IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE***KGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHL***
Disordered Region (DISOPRED)
*************FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP********KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEN*****KALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEEL*******************QFRCLDKAAIVP**********VCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT*
Disordered Region (DISEMBL)
********KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLATS
Disordered Region (DISPRO)
**********KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLATS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLATS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	478	2.2.26 [Sep-21-2011]
Q93VV5	591	Probable peptide/nitrate	yes	no	0.966	0.781	0.426	1e-104
Q8VYE4	567	Probable peptide/nitrate	no	no	0.964	0.813	0.400	6e-96
Q8H157	585	Nitrate transporter 1.2 O	no	no	0.970	0.793	0.389	1e-94
Q56XQ6	601	Probable peptide/nitrate	no	no	0.951	0.757	0.406	1e-89
Q9FM20	589	Probable peptide/nitrate	no	no	0.926	0.752	0.369	2e-85
Q9M390	570	Peptide transporter PTR1	no	no	0.953	0.8	0.350	5e-85
Q9LFB8	570	Peptide transporter PTR5	no	no	0.960	0.805	0.356	1e-84
Q9LYR6	624	Probable peptide/nitrate	no	no	0.964	0.738	0.371	1e-84
Q93Z20	590	Probable peptide/nitrate	no	no	0.943	0.764	0.362	4e-83
P46032	585	Peptide transporter PTR2	no	no	0.953	0.779	0.339	8e-82

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/471 (42%), Positives = 298/471 (63%), Gaps = 9/471 (1%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
            + GG RA  FV  L A E MG  A G +++ Y  NEMHF ++ A+N +TNF G+ F+  
Sbjct: 40  NKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFA 99

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG---KSSC--LKGAI 123
           L+GG++SD +L  F T ++FG +E+   ++L++QA+   L PP C      +C   KG  
Sbjct: 100 LLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFK 159

Query: 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183
           A  F+ +LYL +LG G  +  + A GA QF ++ PK +K L+SYFN   FA ++  +I +
Sbjct: 160 AMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIAL 219

Query: 184 TAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKN 243
           T +V+V    G  +GF +S+ A  +G+I+L  G  ++R ++P  S    +A VIV AI  
Sbjct: 220 TLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILK 279

Query: 244 RKLSLPDNPEELYEINKI-ERVGTEERIPHTNQFRCLDKAAIVPKDS-TAAAPWRVCTVT 301
           RKL+ P +P  L+  + +   V     +PHT +FR LDKA I  +D+ T  +PWR+CTVT
Sbjct: 280 RKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKACIKIQDTNTKESPWRLCTVT 339

Query: 302 QVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRL-GSIKVPTPSIPVLPLL 360
           QVE+VK L  ++PI ASTI+ NT LAQLQT SV QG+ M+ RL  S  +P  S+  +P +
Sbjct: 340 QVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYI 399

Query: 361 FMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQ 420
            +  L+P+Y+   VPFARK+TGH +GI  L R+G+GL LS  SM  A  +E KRR++ + 
Sbjct: 400 MLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDS-SV 458

Query: 421 SPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFC 471
              + +S+FW++ Q+ IFGI++MFT VGL+EFFYK++  GM + L+ L +C
Sbjct: 459 LDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYC 509

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1

 Score =  351 bits (901), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 193/482 (40%), Positives = 291/482 (60%), Gaps = 21/482 (4%)

Query: 3   DKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG 62
           +K A   + GG  A +FV  +  LEN+ F+AN  ++VLY KN MH  +A +S+ +T F  
Sbjct: 20  NKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMA 79

Query: 63  STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK-- 120
           + FLL L+GGF++D + S F   L+  ++E L L++LTIQA   SL PP C  S+ L+  
Sbjct: 80  TAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKSSAALRCE 139

Query: 121 ---GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177
              G+ AA+ +  LYL SLG GG +G+LP+ GA QFDE  PKG K  +++FN+Y+F  + 
Sbjct: 140 VVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSC 199

Query: 178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVI 237
            A++ VT +V++  ++GW  GF +S+++  + ++   +G  FY+ + P  SPL  + +V+
Sbjct: 200 GALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVL 259

Query: 238 VVAIKNRKLSLPDNPEELYEINKIERVGTEERIPH---TNQFRCLDKAAIVPKDSTAAAP 294
           + A     +S        +  ++  +   EE+ P    TN   CL+KA     +      
Sbjct: 260 LAA---SIVSCSSKTSSNHFTSREVQSEHEEKTPSQSLTNSLTCLNKAI----EGKTHHI 312

Query: 295 WRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSI 354
           W  CTV QVE+VKI+ +M+PI   TI++N CLAQL T SV Q A M+ ++ +  VP+ S+
Sbjct: 313 WLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSASL 372

Query: 355 PVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKR 414
           PV P++FM IL P Y+ L +PFARK+T    GIT LQR+GVGLVLS+++M +A  VE+KR
Sbjct: 373 PVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432

Query: 415 RNA------FNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHL 468
           +         +      I+  W++ QY   G AD+FT  GLLEFF+ EAP+ MR+L   L
Sbjct: 433 KQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSL 492

Query: 469 HF 470
            +
Sbjct: 493 SW 494

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 194/498 (38%), Positives = 299/498 (60%), Gaps = 34/498 (6%)

Query: 3   DKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG 62
           ++ A   + GG  A +FV V+  LEN+ ++AN  ++VLY +  MH   + ++N +TNF G
Sbjct: 18  NRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSANDVTNFMG 77

Query: 63  STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC--LK 120
           + FLL L+GGF+SD + S F   L+  ++E L L++LTIQA + SL PP C   +C  + 
Sbjct: 78  TAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSCDSPTCEEVS 137

Query: 121 GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM 180
           G+ AA  +  LYL +LG GG +G+L + GA QFDE+ PKG K  +++FN+++F     A+
Sbjct: 138 GSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGAL 197

Query: 181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVA 240
           + VT +V++  ++GW  GF +S++A  + ++    G  FYR + P  SPL  + +V++ A
Sbjct: 198 VAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAA 257

Query: 241 I---------KNRKLSLPDNP---------EELYEINKIERVGTEERIPH----TNQFRC 278
                      N   S+  +P         +E+    ++E+   EE +P     TN  + 
Sbjct: 258 SVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPRAQLTNSLKV 317

Query: 279 LDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGA 338
           L+ AA    D         CTV QVE+VKI+ +M+PI A TI++N CLAQL T SV Q A
Sbjct: 318 LNGAA----DEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQAA 373

Query: 339 YMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLV 398
            M+ ++GS+K+P  S+P+ P++F+ IL PIY+ L +PFARK T    G+T LQR+GVGLV
Sbjct: 374 SMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGLV 433

Query: 399 LSVISMTIAGFVEVKRRNAFNQS---PPKQ---ISLFWLSFQYCIFGIADMFTFVGLLEF 452
           LS+++M +A  VE+KR+     S     K+   ++  W++ QY   G AD+FT  GLLE+
Sbjct: 434 LSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGSADLFTLAGLLEY 493

Query: 453 FYKEAPAGMRTLLLHLHF 470
           F+ EAP+ MR+L   L +
Sbjct: 494 FFTEAPSSMRSLATSLSW 511

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1

 Score =  330 bits (847), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 285/470 (60%), Gaps = 15/470 (3%)

Query: 10  QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCL 69
           + GG RA  FV    A E M   A G +++ Y  NEMHF ++ ++N +TNF G+ FLL L
Sbjct: 38  KHGGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSL 97

Query: 70  VGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS----CLK--GAI 123
           +GGF+SD+YL  F T LVFG +E+   ++L++QA+   L PP+C   S    C++  G  
Sbjct: 98  LGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTIHCVEANGYK 157

Query: 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183
           AA  Y +L L +LG G  +  + + GA QF   D    + L+S+FN   FA ++  +I +
Sbjct: 158 AATLYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAYFAFSMGQLIAL 214

Query: 184 TAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKN 243
           T +V+V    G  +GF +S+     G+I+L  G  FYR + P  S    +AQV V AI  
Sbjct: 215 TLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITK 274

Query: 244 RKLSLPDNPEELYE-INKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQ 302
           RK   P NP  +++    + RV   + + H+N+FR LDKA I  +     +PWR+CT+ Q
Sbjct: 275 RKQICPSNPNMVHQPSTDLVRV---KPLLHSNKFRFLDKACIKTQGKAMESPWRLCTIEQ 331

Query: 303 VEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRL-GSIKVPTPSIPVLPLLF 361
           V +VKIL  ++PI A TII NT LAQLQT SV QG+ M+  +  + ++P  S+  +P + 
Sbjct: 332 VHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYII 391

Query: 362 MAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQS 421
           +   +P+YE  FVP ARK+TG+ +GI+ LQR+G GL L+  SM  A  VE KRR +F + 
Sbjct: 392 LIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQ 451

Query: 422 PPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFC 471
               +S+FW++ Q+ IFG+++MFT VGL+EFFYK++   M++ L  + +C
Sbjct: 452 -NVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYC 500

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2

 Score =  317 bits (811), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/468 (36%), Positives = 266/468 (56%), Gaps = 25/468 (5%)

Query: 10  QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCL 69
           + GG  A +FV V+  LEN+ F+AN  ++VLY   +M F  +GA+N +T F G+ F L L
Sbjct: 56  RHGGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLAL 115

Query: 70  VGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129
           +GGF++D + + F   LV   +E L L++LT+QA+  S  P               + + 
Sbjct: 116 LGGFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEPWS-----------RVFLFV 164

Query: 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189
            LYL +LG GG +G+LP  GA QFDE    G +  + +FN+++F+ +  A+I VT +V++
Sbjct: 165 GLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWL 224

Query: 190 FIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAI--KNRKLS 247
             ++GW  GF +S+ A LI +     G   YR++ P  SP+  + +V+  A+  K +K  
Sbjct: 225 EDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRR 284

Query: 248 LPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVK 307
                   +  N  +   T++     + F       +V +  +   P R CT  QV++VK
Sbjct: 285 TSRIVVTCHTRNDCDDSVTKQNCDGDDGFLGSFLGEVVRERESLPRPLR-CTEEQVKDVK 343

Query: 308 ILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIP 367
           I+ +++PI  STI++N CLAQL T SV Q + M+ +LGS  VP  ++PV P++FM IL P
Sbjct: 344 IVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAP 403

Query: 368 IYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRN----------- 416
            Y  L +P ARK T    GIT LQR+G GLVLS+++M +A  VE KR++           
Sbjct: 404 TYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNS 463

Query: 417 AFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           +   S P  I+  W++ QY   G AD+FT  G++EFF+ EAP+ MR+L
Sbjct: 464 SSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSL 511

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  315 bits (807), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 166/474 (35%), Positives = 275/474 (58%), Gaps = 18/474 (3%)

Query: 6   AGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTF 65
           A  ++ G ++AC F+      E + +   G ++V Y ++ ++   A A+N +TN+ G+ +
Sbjct: 20  ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCY 79

Query: 66  LLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL-KGAIA 124
           +  L+G FI+D YL R+ T   F  + V  + +LT+ A    L P +C   +C    +  
Sbjct: 80  ITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQT 139

Query: 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT 184
           A F+ +LY+ +LG GG +  + + GA QFDEND       +S+FN++ F+  + A+I  T
Sbjct: 140 AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAAT 199

Query: 185 AIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNR 244
            +V++ ++ GW  GF + +VA +I +     G  FYR+Q+PG SPL R+ QVIV A +  
Sbjct: 200 VLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKI 259

Query: 245 KLSLPDNPEELYEINKIE-RVGTEERIPHTNQFRCLDKAAIVPKDST----AAAPWRVCT 299
            + +P++   L+E    E  +    ++ HT+  +  DKAA+  +  +       PWR+C+
Sbjct: 260 SVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCS 319

Query: 300 VTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLG-SIKVPTPSIPVLP 358
           VTQVEE+K +  ++P+ A+ I+  T  +Q+ T+ V QG  MD  +G + ++P+ S+ +  
Sbjct: 320 VTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFD 379

Query: 359 LLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVE------V 412
            + +    P+Y+   +P ARK T +  G TQLQR+G+GLV+S+ +M  AG +E      V
Sbjct: 380 TVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYV 439

Query: 413 KRRNAFNQSPPKQI--SLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           K  NA++Q   KQI  S+FW   QY + G A++FTF+G LEFFY +AP  MR+L
Sbjct: 440 KTHNAYDQ---KQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSL 490

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  314 bits (804), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 273/474 (57%), Gaps = 15/474 (3%)

Query: 4   KVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGS 63
           K A   + G ++AC F+      E + +     +++ Y + +M+ +   AS +++N+ G+
Sbjct: 19  KPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGT 78

Query: 64  TFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI 123
            +   L+G FI+D YL R+ T   F  + +  + +LTI A    L P   G++       
Sbjct: 79  CYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQ 138

Query: 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183
            A  + +LYL +LG GG +  + + GA QFD+ D K  ++ +S+FN++ F   + AMI  
Sbjct: 139 TAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIAS 198

Query: 184 TAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKN 243
           + +V++ ++ GW  G  + +VA  I ++    G  FYR+Q+PG SPL R+ QVIV + + 
Sbjct: 199 SVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRK 258

Query: 244 RKLSLPDNPEELYEINKIER--VGTEERIPHTNQFRCLDKAAI-VPKDSTAAAP---WRV 297
            K+ +P++   LYE    E   +G+  ++ HT      DKAA+    D+  AA    W++
Sbjct: 259 SKVKIPEDESLLYENQDAESSIIGS-RKLEHTKILTFFDKAAVETESDNKGAAKSSSWKL 317

Query: 298 CTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLG-SIKVPTPSIPV 356
           CTVTQVEE+K L R++PI A+ I+  +  +Q+ T+ V QG  +D  +G + K+P+ S+ +
Sbjct: 318 CTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSL 377

Query: 357 LPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKR-- 414
              L +    P+Y+ L VPFARK TGH  G TQLQR+G+GLV+S+ SM  AG +EV R  
Sbjct: 378 FDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLN 437

Query: 415 ----RNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
                N +N+     +++FW   QY + G A++FTF+G LEFFY +AP  MR+L
Sbjct: 438 YVQTHNLYNEETIP-MTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSL 490

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score =  314 bits (804), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/485 (37%), Positives = 270/485 (55%), Gaps = 24/485 (4%)

Query: 2   GDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF 61
           G  +A + + GG+ A  F+F     E M +    ++MV +    MH     +SN + NF 
Sbjct: 56  GKPIANLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFL 115

Query: 62  GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP--PDCGKSSCL 119
           G +    ++GGF++D YL R+ T  +F T+ ++ L+ +T+ A  K   P   +CG+ S L
Sbjct: 116 GISQASSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLL 175

Query: 120 KGAIAA-------YFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172
            G           Y Y  LY+   G  G R  + + GA QFDE        L  +FNF+ 
Sbjct: 176 LGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFY 235

Query: 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVR 232
            + TL A+I  T +VYV ++ GW + F   +VA  I       G P YR + PG SPL R
Sbjct: 236 LSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTR 295

Query: 233 VAQVIVVAIKNRKLSLPDNP-EELYEINKIER-VGTEERIPHTNQFRCLDKAAI-VPKDS 289
           VAQV+V A + R  +   +    LYE+  ++  +    +IPH+N F  LDKAA+ + +D 
Sbjct: 296 VAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDG 355

Query: 290 TAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKV 349
              +PW++CTVTQVEEVKIL R++PI   TI+++  L +  TLSV Q   ++  +  +K+
Sbjct: 356 LEPSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKL 415

Query: 350 PTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGF 409
           P   +PV P L + +++ +Y  +FVP  R+ITG+P G +QLQRVG+GL +S+IS+  AG 
Sbjct: 416 PVTCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGL 475

Query: 410 VEVKRR----------NAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPA 459
            E  RR          N   Q P   ++ +WL  QYC+ GIA++F  VGLLEF Y+EAP 
Sbjct: 476 FENYRRHYAIQNGFEFNFLTQMP--DLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 533

Query: 460 GMRTL 464
            M+++
Sbjct: 534 AMKSI 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  308 bits (790), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 266/469 (56%), Gaps = 18/469 (3%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
           K+ G ++AC F+      E + +     +++ Y+ +E+H     A++ +  + G+ ++  
Sbjct: 51  KKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITP 110

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD--------CGKSSCLK 120
           L+G  I+D+Y  R+ T   F  +  + + +LT+ A    L P          C  ++ ++
Sbjct: 111 LIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQ 170

Query: 121 GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM 180
            A+   F+  LYL +LG GG +  + + GA QFD+ DP+     AS+FN++ F+  + + 
Sbjct: 171 YAV---FFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSF 227

Query: 181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVA 240
           I  T +V+V  + GW LGFLI +V   + + +  IG P YR Q+PG SP+ RV QV+V A
Sbjct: 228 ISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAA 287

Query: 241 IKNRKLSLPDNPEELYEI-NKIERVGTEERIPHTNQFRCLDKAAIVP----KDSTAAAPW 295
            +  KL+LP++   LYE   K   +    +I HT+ ++ LDKAA++     K    + PW
Sbjct: 288 YRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPW 347

Query: 296 RVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIP 355
           ++CTVTQVEEVK L RM PI AS I+ +   +Q+ TL V QG  M+  + S ++P  S  
Sbjct: 348 KLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFG 407

Query: 356 VLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRR 415
           V   L + I IPIY+   VPF R+ TG P G+T LQR+G+GL LSV+S+  A  VE  R 
Sbjct: 408 VFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRL 467

Query: 416 NAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
                     +S+FW   QY + GIA++F F+G +EFFY E+P  MR++
Sbjct: 468 QLAQDF--VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSV 514

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  304 bits (779), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 263/469 (56%), Gaps = 13/469 (2%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
           ++ G ++AC F+      E + +     +++ Y   ++H     A+  +T + G+ +L  
Sbjct: 40  EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTP 99

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY-- 126
           L+G  ++D Y  R+ T   F  +  + +  LT+ A   +L P +C    C     A Y  
Sbjct: 100 LIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAM 159

Query: 127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
           F+G LYL +LG GG +  + + GA QFD+ D +     AS+FN++ F+  + A++  + +
Sbjct: 160 FFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLL 219

Query: 187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKL 246
           V++  ++GW LGF I +V   + + +   G P YR Q+PG SP+ R++QV+V + +   +
Sbjct: 220 VWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSV 279

Query: 247 SLPDNPEELYEI-NKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAP----WRVCTVT 301
            +P++   LYE  +K   +    +I HT+  + LDKAA++ ++ + +      WR+CTVT
Sbjct: 280 KVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVT 339

Query: 302 QVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLF 361
           QVEE+KIL RM PI AS II +   AQ+ T+ V QG  M+ ++GS ++P  ++       
Sbjct: 340 QVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTAS 399

Query: 362 MAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQ- 420
           + I +P+Y+   VP ARK TG   G T++QR+G+GL +SV+ M  A  VE+ R +  N  
Sbjct: 400 VIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDL 459

Query: 421 -----SPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
                  P  IS+ W   QY I G A++F F+G LEFFY ++P  MR+L
Sbjct: 460 GLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSL 508

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
357441977	606	Peptide transporter PTR1 [Medicago trunc	0.989	0.780	0.639	1e-179
356574054	618	PREDICTED: probable peptide/nitrate tran	0.960	0.742	0.660	1e-178
356534943	604	PREDICTED: probable peptide/nitrate tran	0.962	0.761	0.656	1e-177
225450417	736	PREDICTED: probable peptide/nitrate tran	0.947	0.615	0.667	1e-176
296089862	626	unnamed protein product [Vitis vinifera]	0.947	0.723	0.667	1e-175
357511669	585	Peptide transporter PTR1 [Medicago trunc	0.947	0.774	0.657	1e-174
356505723	582	PREDICTED: nitrate transporter 1.2-like	0.972	0.798	0.634	1e-174
255543056	640	nitrate transporter, putative [Ricinus c	0.947	0.707	0.649	1e-171
449454111	662	PREDICTED: probable peptide/nitrate tran	0.947	0.684	0.641	1e-161
224055275	534	predicted protein [Populus trichocarpa]	0.907	0.812	0.623	1e-157

>gi|357441977|ref|XP_003591266.1| Peptide transporter PTR1 [Medicago truncatula] gi|355480314|gb|AES61517.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 310/485 (63%), Positives = 373/485 (76%), Gaps = 12/485 (2%)

Query: 1   MGDK---------VAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA 51
           MGDK         +   KQKGGFRA  F+FVLSAL+NMGF+ N +S+VLYF   MHFD++
Sbjct: 1   MGDKEVKEELKPIIQWKKQKGGFRASMFIFVLSALDNMGFVTNMVSLVLYFIGVMHFDLS 60

Query: 52  GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP 111
            ++NTLTNF GSTFLL LVG FISDTYL+RF TCLVFG+LEV++LVM+T+QA   +LHP 
Sbjct: 61  SSANTLTNFMGSTFLLSLVGAFISDTYLNRFTTCLVFGSLEVMALVMITVQAALDNLHPK 120

Query: 112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171
            CGKSSC++G IA  FY SL LY+LG GG RG+L A GA QFDE DP  AKALA++FN+ 
Sbjct: 121 ACGKSSCVEGGIAVMFYTSLCLYALGMGGVRGSLTAFGANQFDEKDPNEAKALATFFNWL 180

Query: 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLV 231
           L ++TL ++IGVT IV+V   + W  GF I +VA+ IG + LAIGKPFYRI+ PGESP++
Sbjct: 181 LLSSTLGSVIGVTGIVWVSTQKAWHWGFFIITVASSIGFVTLAIGKPFYRIKTPGESPIL 240

Query: 232 RVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTA 291
           R+ QVIVVA KNRKL LP++ E+LYE+ K     T E+I HTNQ R LDKAAI+ ++S +
Sbjct: 241 RIIQVIVVAFKNRKLQLPESNEQLYEVYKD---ATIEKIVHTNQMRFLDKAAILQENSES 297

Query: 292 AAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPT 351
             PW+VCTVTQVEEVKIL RM+PILASTI+MNTCLAQLQT SV QG  M+ +LGS  VP 
Sbjct: 298 QQPWKVCTVTQVEEVKILTRMLPILASTIVMNTCLAQLQTFSVQQGNSMNLKLGSFTVPA 357

Query: 352 PSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVE 411
            SIPV+PL+F+  LIPIYE  FVPF RKIT HP+G+TQLQRVGVGLVLS ISMTIAGF+E
Sbjct: 358 SSIPVIPLIFLCTLIPIYELFFVPFIRKITHHPSGVTQLQRVGVGLVLSAISMTIAGFIE 417

Query: 412 VKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFC 471
           VKRR+   + P K ISLFWLSFQY IFGIADMFT VGLLEFFY+EAP+ M++L     F 
Sbjct: 418 VKRRDQGRKDPSKPISLFWLSFQYAIFGIADMFTLVGLLEFFYREAPSTMKSLSTSFTFL 477

Query: 472 HCHLA 476
              L 
Sbjct: 478 SMSLG 482

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574054|ref|XP_003555167.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/463 (66%), Positives = 371/463 (80%), Gaps = 4/463 (0%)

Query: 2   GDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF 61
           GDK    + KGGFRA  F+FVLSAL+NMGF+AN +S+VLYF   MHFD++ ++NTLTNF 
Sbjct: 19  GDKEVKEELKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTNFM 78

Query: 62  GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG 121
           GSTFLL LVGGFISDTY +R  TCL+FG+LEVL+LVMLT+QA    LHP  CGKSSC+KG
Sbjct: 79  GSTFLLSLVGGFISDTYFNRLTTCLLFGSLEVLALVMLTVQAALDHLHPDFCGKSSCVKG 138

Query: 122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI 181
            IA  FY SLYL +LG GG RG+L A GA QF E +P+ AKALASYFN+ L ++TL ++I
Sbjct: 139 GIAVMFYSSLYLLALGMGGVRGSLTAFGADQFGEKNPQEAKALASYFNWLLLSSTLGSII 198

Query: 182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAI 241
           GVT +V+V   + W  GF+I +VA+ IG + LA+GKPFYRI+ PG+SP+ R+AQVIVVA 
Sbjct: 199 GVTGVVWVSTQKAWHWGFIIITVASSIGFLTLALGKPFYRIKTPGQSPISRIAQVIVVAF 258

Query: 242 KNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVT 301
           KNRKL LP++ EELYE+ +     T E+I HTNQ R LD+A+I+ +++  + PW+VCTVT
Sbjct: 259 KNRKLPLPESNEELYEVYE---EATLEKIAHTNQMRFLDRASIL-QENIESRPWKVCTVT 314

Query: 302 QVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLF 361
           QVEEVKIL RM+PILASTIIMNTCLAQLQT SV QG  M+ +LGS  VP PSIPV+PLLF
Sbjct: 315 QVEEVKILTRMLPILASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPAPSIPVIPLLF 374

Query: 362 MAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQS 421
           M+ILIP+YEF FVPFARKIT HP+G+TQLQRVGVGLVLS ISMTIAG +EVKRR+   + 
Sbjct: 375 MSILIPLYEFFFVPFARKITHHPSGVTQLQRVGVGLVLSSISMTIAGIIEVKRRDQGRKD 434

Query: 422 PPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           P + ISLFWLSFQY IFGIADMFT VGLLEFFY+EAP  M++L
Sbjct: 435 PSRPISLFWLSFQYAIFGIADMFTLVGLLEFFYREAPVTMKSL 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534943|ref|XP_003536010.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/466 (65%), Positives = 375/466 (80%), Gaps = 6/466 (1%)

Query: 1   MGDK-VAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTN 59
           MGDK V   +QKGGFRA  F+FVLSAL+NMGF+AN +S+VLYF   MHFD++ ++NTLTN
Sbjct: 1   MGDKEVKEEEQKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTN 60

Query: 60  FFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL 119
           F GSTFLL LVGGFISDTY +R  TCL+FG+LEVL+LVMLT+QA    LHP  CGKSSC+
Sbjct: 61  FMGSTFLLSLVGGFISDTYFNRLTTCLLFGSLEVLALVMLTVQAGLDHLHPDYCGKSSCV 120

Query: 120 KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEN-DPKGAKALASYFNFYLFATTLA 178
           KG IA  FY SLYL +LG GG RG+L A GA QFDE  +P  AKALAS+FN+ L ++TL 
Sbjct: 121 KGGIAVMFYSSLYLLALGMGGVRGSLTAFGADQFDEKKNPGEAKALASFFNWILLSSTLG 180

Query: 179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIV 238
           ++IGVT +V+V   + W  GF+I ++A+ IG + LA+GKPFYRI+ PG+SP++R+AQVIV
Sbjct: 181 SIIGVTGVVWVSTQKAWHWGFIIITIASSIGFLTLALGKPFYRIKTPGQSPILRIAQVIV 240

Query: 239 VAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVC 298
           VA KNRKL LP++ EELYE+ +     T E+I HTNQ R LD+A+I+ +++  +  W+VC
Sbjct: 241 VAFKNRKLPLPESDEELYEVYED---ATLEKIAHTNQMRFLDRASIL-QENIESQQWKVC 296

Query: 299 TVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLP 358
           TVTQVEEVKIL RM+PILASTIIMNTCLAQLQT SV QG+ M+ +LGS  VP PSIPV+P
Sbjct: 297 TVTQVEEVKILTRMLPILASTIIMNTCLAQLQTFSVQQGSVMNLKLGSFTVPAPSIPVIP 356

Query: 359 LLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAF 418
           LLFM+ILIP+YEF FVPFARKIT HP+G+TQLQRVGVGLVLS ISMTIAG +EVKRR+  
Sbjct: 357 LLFMSILIPLYEFFFVPFARKITHHPSGVTQLQRVGVGLVLSAISMTIAGIIEVKRRDQG 416

Query: 419 NQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
            + P + ISLFWLSFQY IFG+ADMFT VGLLEFFY+EAP  M++L
Sbjct: 417 RKDPSRPISLFWLSFQYAIFGVADMFTLVGLLEFFYREAPETMKSL 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450417|ref|XP_002276071.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/454 (66%), Positives = 361/454 (79%), Gaps = 1/454 (0%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRA  F+++L++LENMGF+AN +S+  YF   MHFD++GA+NTLTNF G+TFLL LV
Sbjct: 140 KGGFRASMFIYILTSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLV 199

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGF+SDT LSR  TCL+FGT+E+L L+++TIQAYS  LHP DCGK SC++G  A  FY S
Sbjct: 200 GGFVSDTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVS 259

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           L LY+LG GG RG LPALGA QF++ DP  A+ALAS+FN+ + + T+ A +GVT IV+V 
Sbjct: 260 LCLYALGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVS 319

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPD 250
               W+ GF IS V   IG I LA+G+ FYRIQ  G+SP++R  QVIVVAIKNR LS P+
Sbjct: 320 STVTWYWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQVIVVAIKNRSLSPPE 379

Query: 251 NPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILA 310
           +P ELYEIN      T+ ++ HT+QFRCLDKAAI+ KDS    PW VCTVTQVEEVKIL 
Sbjct: 380 SPGELYEINDQVTDFTDPKLAHTDQFRCLDKAAILGKDS-EPRPWEVCTVTQVEEVKILT 438

Query: 311 RMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYE 370
           RM+PIL STIIMNTCLAQLQT SV QG  MD  LGS +VP  SIP++PL+FM+ILIPIYE
Sbjct: 439 RMLPILFSTIIMNTCLAQLQTFSVHQGNEMDRFLGSFEVPASSIPIIPLVFMSILIPIYE 498

Query: 371 FLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFW 430
           F+FVPFARKITGHPAGITQLQRVG+GLVLS ISM +AG VEVKRRN   + PP++ISLFW
Sbjct: 499 FVFVPFARKITGHPAGITQLQRVGIGLVLSAISMAVAGLVEVKRRNEALEIPPRKISLFW 558

Query: 431 LSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           LSFQY IFGIADMFT VGLLEFFYKEAP GMR+L
Sbjct: 559 LSFQYGIFGIADMFTLVGLLEFFYKEAPKGMRSL 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089862|emb|CBI39681.3| unnamed protein product [Vitis vinifera]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 303/454 (66%), Positives = 361/454 (79%), Gaps = 1/454 (0%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRA  F+++L++LENMGF+AN +S+  YF   MHFD++GA+NTLTNF G+TFLL LV
Sbjct: 30  KGGFRASMFIYILTSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLV 89

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGF+SDT LSR  TCL+FGT+E+L L+++TIQAYS  LHP DCGK SC++G  A  FY S
Sbjct: 90  GGFVSDTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVS 149

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           L LY+LG GG RG LPALGA QF++ DP  A+ALAS+FN+ + + T+ A +GVT IV+V 
Sbjct: 150 LCLYALGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVS 209

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPD 250
               W+ GF IS V   IG I LA+G+ FYRIQ  G+SP++R  QVIVVAIKNR LS P+
Sbjct: 210 STVTWYWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQVIVVAIKNRSLSPPE 269

Query: 251 NPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILA 310
           +P ELYEIN      T+ ++ HT+QFRCLDKAAI+ KDS    PW VCTVTQVEEVKIL 
Sbjct: 270 SPGELYEINDQVTDFTDPKLAHTDQFRCLDKAAILGKDS-EPRPWEVCTVTQVEEVKILT 328

Query: 311 RMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYE 370
           RM+PIL STIIMNTCLAQLQT SV QG  MD  LGS +VP  SIP++PL+FM+ILIPIYE
Sbjct: 329 RMLPILFSTIIMNTCLAQLQTFSVHQGNEMDRFLGSFEVPASSIPIIPLVFMSILIPIYE 388

Query: 371 FLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFW 430
           F+FVPFARKITGHPAGITQLQRVG+GLVLS ISM +AG VEVKRRN   + PP++ISLFW
Sbjct: 389 FVFVPFARKITGHPAGITQLQRVGIGLVLSAISMAVAGLVEVKRRNEALEIPPRKISLFW 448

Query: 431 LSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           LSFQY IFGIADMFT VGLLEFFYKEAP GMR+L
Sbjct: 449 LSFQYGIFGIADMFTLVGLLEFFYKEAPKGMRSL 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511669|ref|XP_003626123.1| Peptide transporter PTR1 [Medicago truncatula] gi|87241322|gb|ABD33180.1| TGF-beta receptor, type I/II extracellular region [Medicago truncatula] gi|355501138|gb|AES82341.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/456 (65%), Positives = 365/456 (80%), Gaps = 3/456 (0%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
           ++KGGFRA  F+FVLSAL+NMGF+AN +S+VLYF   MHFDI  ++NTLTNF GSTFLL 
Sbjct: 18  RKKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDIPSSANTLTNFMGSTFLLS 77

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY 128
           LVGGFISDTYL+RF TCL+FG+LEVL+L ++T QA S  LHP  CGKSSC+KG I   FY
Sbjct: 78  LVGGFISDTYLNRFTTCLLFGSLEVLALALVTFQAASDHLHPNACGKSSCVKGGIEFMFY 137

Query: 129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY 188
            SL L +LG GG RG++ A GA QF+E D   AKALAS+FN+ L ++TL A+ GVT +V+
Sbjct: 138 TSLSLLALGIGGVRGSMTAFGADQFEEKDSNEAKALASFFNWLLLSSTLGAITGVTGVVW 197

Query: 189 VFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSL 248
           V   + W  GF I ++A+ IG + LA+GKPFYRI+ PG+SP +R+AQVIVVA KNRKLSL
Sbjct: 198 VSTQRAWHWGFFIITIASSIGFVTLALGKPFYRIKTPGDSPTIRIAQVIVVAFKNRKLSL 257

Query: 249 PDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKI 308
           P++ EELYEI+  ++ GT E+I HT Q R LDKAAI P++     PW+VCTVTQVEEVKI
Sbjct: 258 PESHEELYEIS--DKDGTVEKIVHTKQMRFLDKAAI-PQEYIKPQPWKVCTVTQVEEVKI 314

Query: 309 LARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPI 368
           L RM+PI+ASTIIMNTCLAQLQT SV QG  M+ +LGS  VP  SIPV+PL+F++IL+PI
Sbjct: 315 LTRMLPIVASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPASSIPVIPLIFISILVPI 374

Query: 369 YEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISL 428
           YE  FVPFARKIT HP+GITQLQRVGVGLVLSVISMT+AG VEVKRR+   ++P   ISL
Sbjct: 375 YELFFVPFARKITNHPSGITQLQRVGVGLVLSVISMTVAGIVEVKRRDQSRKNPSNPISL 434

Query: 429 FWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           FWLSFQY IFGIADMFT VGLLEFFY+E+P+ M++L
Sbjct: 435 FWLSFQYGIFGIADMFTLVGLLEFFYRESPSSMKSL 470

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505723|ref|XP_003521639.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/468 (63%), Positives = 370/468 (79%), Gaps = 3/468 (0%)

Query: 9   KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
           + KGGF A  F+FVLSAL+NMGF+AN +S+VLYF   MHFD+A ++NTLTNF GST+LL 
Sbjct: 24  RSKGGFMASMFIFVLSALDNMGFVANMVSIVLYFYGVMHFDLASSANTLTNFMGSTYLLS 83

Query: 69  LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY 128
           LVGGFISDTYL+RF TCL+FG+LEVL+L MLT+QA SK LHP  CGKSSC+KG IA  FY
Sbjct: 84  LVGGFISDTYLNRFTTCLLFGSLEVLALAMLTVQAASKHLHPEACGKSSCVKGGIAVMFY 143

Query: 129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY 188
            SL L +LG GG RG++ A GA QFDE DP  AKALAS+FN+ L ++T+ A+ GVT +V+
Sbjct: 144 TSLCLLALGMGGVRGSMTAFGADQFDEKDPTEAKALASFFNWLLLSSTVGAITGVTGVVW 203

Query: 189 VFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSL 248
           V   + W  GF I ++A+ +G + LA+GK FYRI+ PG+SP +R+AQVIVV+ KNRKLSL
Sbjct: 204 VSTQKAWHWGFFIITIASSVGFVTLALGKQFYRIKTPGDSPTLRIAQVIVVSFKNRKLSL 263

Query: 249 PDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKI 308
           P++  ELYEI+  ++  T E+I HTNQ R LDKAAI+ ++S+    W++CTVTQVEEVKI
Sbjct: 264 PESHGELYEIS--DKDATAEKIAHTNQMRFLDKAAII-QESSKPQAWKICTVTQVEEVKI 320

Query: 309 LARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPI 368
           L RM+PI+ASTII+NTC+AQLQT SV QG  MD +LGS+ VP PSIPV+PL+F+++L+P+
Sbjct: 321 LTRMLPIVASTIILNTCMAQLQTFSVQQGNVMDLKLGSLTVPAPSIPVIPLVFISVLVPL 380

Query: 369 YEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISL 428
           YE  FVPFARKIT HP+GITQLQRVGVGLVLS ISM +AG VEVKRR+   + P K ISL
Sbjct: 381 YELFFVPFARKITNHPSGITQLQRVGVGLVLSAISMAVAGIVEVKRRDQGRKDPSKPISL 440

Query: 429 FWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA 476
           FWLSFQY IFGIADMFT VGLLEFFY+E+PA M++L   L +    L 
Sbjct: 441 FWLSFQYGIFGIADMFTLVGLLEFFYRESPASMKSLSTSLTWLSTSLG 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543056|ref|XP_002512591.1| nitrate transporter, putative [Ricinus communis] gi|223548552|gb|EEF50043.1| nitrate transporter, putative [Ricinus communis]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/454 (64%), Positives = 368/454 (81%), Gaps = 1/454 (0%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRAC FVFVL AL+NMGFIAN +S+VLYF   M+FDI  ++NTLTN  GS FLL L+
Sbjct: 18  KGGFRACMFVFVLVALDNMGFIANMVSLVLYFLKVMYFDIPNSANTLTNLMGSIFLLTLL 77

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGFISDT+L++  T L+F  +E+L++V++TIQA++KSLHPP CGK  C++G I    Y S
Sbjct: 78  GGFISDTFLNKLYTVLLFAVIEILAMVLMTIQAHAKSLHPPYCGKPKCVEGKIEFTLYAS 137

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           L L +LG GG RG LP+LGA QF++NDP+ AK LA+YFN+   +T L A +GVT IV+V 
Sbjct: 138 LALLALGSGGVRGALPSLGADQFNQNDPEEAKDLATYFNWMTLSTVLGAAVGVTGIVWVS 197

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPD 250
           ++  W+ GF+IS++A  +G I LA GK +Y +++PGESPL+R+ QV VVAIKNRKLSLP+
Sbjct: 198 VNDAWYKGFMISTIAAFVGFIVLACGKRYYHLKEPGESPLIRIVQVFVVAIKNRKLSLPE 257

Query: 251 NPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILA 310
           NPEELYEI+  ER+ ++E+I HT+QFR LD+AAI+PKD T AAPW+VCTVTQVEEVKIL 
Sbjct: 258 NPEELYEISDEERIYSDEKIAHTDQFRFLDRAAILPKDLT-AAPWQVCTVTQVEEVKILT 316

Query: 311 RMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYE 370
           RMMPIL STIIMNTCLAQLQT SV QG  M+  +G  +VP PS+P++PL+FM ILIP+YE
Sbjct: 317 RMMPILFSTIIMNTCLAQLQTFSVEQGYIMNRFIGKFEVPAPSVPIIPLVFMVILIPMYE 376

Query: 371 FLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFW 430
           F FVPFARKI+GHP+GITQLQRVG+GLVLS ISM +AG VEVKRR+  ++     IS+FW
Sbjct: 377 FFFVPFARKISGHPSGITQLQRVGIGLVLSAISMAVAGIVEVKRRDQAHKDLAHPISVFW 436

Query: 431 LSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           LSFQY IFGIADMFT VGLLEFFYKEAP+GM++L
Sbjct: 437 LSFQYGIFGIADMFTLVGLLEFFYKEAPSGMKSL 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454111|ref|XP_004144799.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Cucumis sativus]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/457 (64%), Positives = 350/457 (76%), Gaps = 4/457 (0%)

Query: 11  KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLV 70
           KGGFRA  F+F L   E+MGF+AN  S+V YF   MHFD+  A+NTLTNF GS FLL L+
Sbjct: 33  KGGFRATMFIFGLLTFESMGFVANMTSLVQYFLFVMHFDLQTAANTLTNFMGSAFLLSLL 92

Query: 71  GGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130
           GGF+SDTY++R  TCL+FG LEV++L+++T+QAYS  L P       C+KG IA  FY S
Sbjct: 93  GGFLSDTYINRLNTCLIFGFLEVIALILITVQAYSHDLLPSPLCPKDCVKGRIAFVFYTS 152

Query: 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190
           LYL ++G GG RG LPALGA QF++ DPK AKAL ++FN+ L +  + A +GVT IV+V 
Sbjct: 153 LYLLAIGSGGVRGALPALGADQFNQKDPKEAKALGTFFNYMLLSVVIGAAVGVTLIVWVA 212

Query: 191 IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPD 250
           +++ W+ GF IS++A L+G I  AIGKPFYRIQ PG+SPL+RV QVIVVAIKNR+L LPD
Sbjct: 213 VNKAWYWGFFISALAALVGFIIFAIGKPFYRIQVPGQSPLLRVIQVIVVAIKNRRLRLPD 272

Query: 251 NPEELYEI-NKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKIL 309
            P ELYEI +K+       +I HTNQ R LDKAAIVPKD     PW VC+VTQVEEVKI+
Sbjct: 273 TPNELYEISDKLHMDSNHYKIVHTNQLRFLDKAAIVPKD-IEPQPWNVCSVTQVEEVKII 331

Query: 310 ARMMPILASTIIMNTCLAQLQTLSVTQG--AYMDPRLGSIKVPTPSIPVLPLLFMAILIP 367
            RM+PI  STIIMNTCLAQLQT SV QG    MD  LG  + P PSIPV+PL+FMA LIP
Sbjct: 332 TRMVPIFVSTIIMNTCLAQLQTFSVEQGNTRIMDKSLGHFQFPAPSIPVIPLVFMAFLIP 391

Query: 368 IYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQIS 427
           +YEF FVPFARKIT HP+GITQLQRVGVGLVLS I+MT+AG VEVKRR+   + P KQIS
Sbjct: 392 LYEFFFVPFARKITHHPSGITQLQRVGVGLVLSAIAMTVAGLVEVKRRHQATEHPDKQIS 451

Query: 428 LFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL 464
           LFWL+FQY IFG+ADMFT VGLLEFFYKEAP GMR+L
Sbjct: 452 LFWLAFQYGIFGVADMFTLVGLLEFFYKEAPVGMRSL 488

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055275|ref|XP_002298456.1| predicted protein [Populus trichocarpa] gi|222845714|gb|EEE83261.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/436 (62%), Positives = 347/436 (79%), Gaps = 2/436 (0%)

Query: 29  MGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF 88
           MGFIAN  S+VLYF   MHFDIA ++NTLTNF GS F+L LVG FI+DT+L+RF TCL+F
Sbjct: 1   MGFIANMASLVLYFYYIMHFDIATSANTLTNFMGSVFMLSLVGAFIADTFLNRFYTCLLF 60

Query: 89  GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPAL 148
           G +EV+ L +LT QAY K L P  C +S+C++G  A   YGSL LY+LG GG +G +PAL
Sbjct: 61  GIMEVMGLALLTTQAYFKDLQPEFCLRSTCVEGGQAVMLYGSLCLYALGSGGVKGAIPAL 120

Query: 149 GAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI 208
           G  QFD +  K   ALA Y+N+ L  +T  +++GVTA+V+V +++GW+ GF +S+VATLI
Sbjct: 121 GGDQFDHHQQKKG-ALARYYNWNLLISTTGSIVGVTAVVWVSMNKGWYKGFFVSTVATLI 179

Query: 209 GLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEE 268
           G   LA+GKPFYRIQ PG S  VR+AQVI V  +NR LSLP NP++L+EI+   R  +EE
Sbjct: 180 GFTVLALGKPFYRIQPPGNSTFVRIAQVIAVTFRNRDLSLPKNPDKLFEIHDASRDPSEE 239

Query: 269 RIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQ 328
           R+ H+NQFR LDKAAI+ ++ T   PW+VCTVTQVEEVKI+ RM+PI+ASTI+MNT +AQ
Sbjct: 240 RLSHSNQFRLLDKAAIL-REGTEPQPWKVCTVTQVEEVKIIIRMIPIIASTILMNTSMAQ 298

Query: 329 LQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGIT 388
           LQT SV QG  MD  LG+  +PTPSIPV+PL+FM++LIPIYEF+ VPFARKITGHP+GIT
Sbjct: 299 LQTFSVQQGVTMDAHLGTKTIPTPSIPVIPLVFMSVLIPIYEFVAVPFARKITGHPSGIT 358

Query: 389 QLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVG 448
           QLQRVGVGLVLS++SM +AGF+E+ R++  +++PP +IS+FWLSFQY IFGIADMFT VG
Sbjct: 359 QLQRVGVGLVLSILSMAVAGFIELYRKHEVHKNPPNKISVFWLSFQYGIFGIADMFTVVG 418

Query: 449 LLEFFYKEAPAGMRTL 464
           LLEFFYKEAP+GMR++
Sbjct: 419 LLEFFYKEAPSGMRSV 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.943	0.763	0.415	3.5e-91
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.433	0.353	0.434	2.1e-88
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.947	0.798	0.390	4.7e-87
TAIR|locus:2006907	601	AT1G33440 [Arabidopsis thalian	0.930	0.740	0.397	4.3e-86
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.962	0.737	0.365	1.3e-75
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.947	0.767	0.359	3.5e-75
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.951	0.798	0.346	5.7e-75
TAIR|locus:2170683	589	AT5G62730 [Arabidopsis thalian	0.920	0.747	0.359	1.1e-73
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.945	0.792	0.341	2.2e-73
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.943	0.764	0.341	1.6e-70

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 191/460 (41%), Positives = 282/460 (61%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG RA  FV  L A E MG  A G +++ Y  NEMHF ++ A+N +TNF G+ F+  L+G
Sbjct:    43 GGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFALLG 102

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK---SSC--LKGAIAAX 126
             G++SD +L  F T ++FG +E+   ++L++QA+   L PP C      +C   KG  A  
Sbjct:   103 GYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFKAMI 162

Query:   127 XXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
                            +  + A GA QF ++ PK +K L+SYFN   FA ++  +I +T +
Sbjct:   163 FFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLL 222

Query:   187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKL 246
             V+V    G  +GF +S+ A  +G+I+L  G  ++R ++P  S    +A VIV AI  RKL
Sbjct:   223 VWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKRKL 282

Query:   247 SLPDNPEELYEINKIER-VGTEERIPHTNQFRCLDKAAIVPKDS-TAAAPWRVCTVTQVE 304
             + P +P  L+  + +   V     +PHT +FR LDKA I  +D+ T  +PWR+CTVTQVE
Sbjct:   283 ASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKACIKIQDTNTKESPWRLCTVTQVE 342

Query:   305 EVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLG-SIKVPTPSIPVLPLLFMA 363
             +VK L  ++PI ASTI+ NT LAQLQT SV QG+ M+ RL  S  +P  S+  +P + + 
Sbjct:   343 QVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLI 402

Query:   364 ILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPP 423
              L+P+Y+   VPFARK+TGH +GI  L R+G+GL LS  SM  A  +E KRR++ +    
Sbjct:   403 FLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDS-SVLDG 461

Query:   424 KQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
             + +S+FW++ Q+ IFGI++MFT VGL+EFFYK++  GM +
Sbjct:   462 RILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMES 501

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
 Identities = 96/221 (43%), Positives = 140/221 (63%)

Query:   253 EELYEINKIERVGTEERIPH----TNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKI 308
             +E+    ++E+   EE +P     TN  + L+ AA    D         CTV QVE+VKI
Sbjct:   288 KEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAA----DEKPVHRLLECTVQQVEDVKI 343

Query:   309 LARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPI 368
             + +M+PI A TI++N CLAQL T SV Q A M+ ++GS+K+P  S+P+ P++F+ IL PI
Sbjct:   344 VLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPI 403

Query:   369 YEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQS---PPKQ 425
             Y+ L +PFARK T    G+T LQR+GVGLVLS+++M +A  VE+KR+     S     K+
Sbjct:   404 YDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKE 463

Query:   426 ---ISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
                ++  W++ QY   G AD+FT  GLLE+F+ EAP+ MR+
Sbjct:   464 TLPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRS 504

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 186/476 (39%), Positives = 279/476 (58%)

Query:     3 DKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG 62
             +K A   + GG  A +FV  +  LEN+ F+AN  ++VLY KN MH  +A +S+ +T F  
Sbjct:    20 NKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMA 79

Query:    63 STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK-- 120
             + FLL L+GGF++D + S F   L+  ++E L L++LTIQA   SL PP C  S+ L+  
Sbjct:    80 TAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKSSAALRCE 139

Query:   121 ---GAIAAXXXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177
                G+ AA                +G+LP+ GA QFDE  PKG K  +++FN+Y+F  + 
Sbjct:   140 VVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSC 199

Query:   178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVI 237
              A++ VT +V++  ++GW  GF +S+++  + ++   +G  FY+ + P  SPL  + +V+
Sbjct:   200 GALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVL 259

Query:   238 VVA-IKNRKLSLPDNPEELYEINKIERVGTEERIPH---TNQFRCLDKAAIVPKDSTAAA 293
             + A I +       N     E+   E    EE+ P    TN   CL+KA     +     
Sbjct:   260 LAASIVSCSSKTSSNHFTSREVQS-EH---EEKTPSQSLTNSLTCLNKAI----EGKTHH 311

Query:   294 PWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPS 353
              W  CTV QVE+VKI+ +M+PI   TI++N CLAQL T SV Q A M+ ++ +  VP+ S
Sbjct:   312 IWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSAS 371

Query:   354 IPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVK 413
             +PV P++FM IL P Y+ L +PFARK+T    GIT LQR+GVGLVLS+++M +A  VE+K
Sbjct:   372 LPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELK 431

Query:   414 RRNAFNQS------PPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
             R+    ++          I+  W++ QY   G AD+FT  GLLEFF+ EAP+ MR+
Sbjct:   432 RKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRS 487

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 183/460 (39%), Positives = 273/460 (59%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG RA  FV    A E M   A G +++ Y  NEMHF ++ ++N +TNF G+ FLL L+G
Sbjct:    40 GGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLG 99

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS----CLK--GAIAA 125
             GF+SD+YL  F T LVFG +E+   ++L++QA+   L PP+C   S    C++  G  AA
Sbjct:   100 GFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAA 159

Query:   126 XXXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA 185
                             +  + + GA QF   D    + L+S+FN   FA ++  +I +T 
Sbjct:   160 TLYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAYFAFSMGQLIALTL 216

Query:   186 IVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRK 245
             +V+V    G  +GF +S+     G+I+L  G  FYR + P  S    +AQV V AI  RK
Sbjct:   217 LVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITKRK 276

Query:   246 LSLPDNPEELYEINK-IERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVE 304
                P NP  +++ +  + RV   + + H+N+FR LDKA I  +     +PWR+CT+ QV 
Sbjct:   277 QICPSNPNMVHQPSTDLVRV---KPLLHSNKFRFLDKACIKTQGKAMESPWRLCTIEQVH 333

Query:   305 EVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLG-SIKVPTPSIPVLPLLFMA 363
             +VKIL  ++PI A TII NT LAQLQT SV QG+ M+  +  + ++P  S+  +P + + 
Sbjct:   334 QVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILI 393

Query:   364 ILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPP 423
               +P+YE  FVP ARK+TG+ +GI+ LQR+G GL L+  SM  A  VE KRR +F +   
Sbjct:   394 FFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQNV 453

Query:   424 KQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
               +S+FW++ Q+ IFG+++MFT VGL+EFFYK++   M++
Sbjct:   454 -MLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQS 492

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 177/484 (36%), Positives = 266/484 (54%)

Query:     2 GDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF 61
             G  +A + + GG+ A  F+F     E M +    ++MV +    MH     +SN + NF 
Sbjct:    56 GKPIANLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFL 115

Query:    62 GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP--DCGKSSCL 119
             G +    ++GGF++D YL R+ T  +F T+ ++ L+ +T+ A  K   P   +CG+ S L
Sbjct:   116 GISQASSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLL 175

Query:   120 KG----AIAAXXXXXXXXXXXXXXXNRGTLPAL---GAGQFDENDPKGAKALASYFNFYL 172
              G    A +                  G  P +   GA QFDE        L  +FNF+ 
Sbjct:   176 LGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFY 235

Query:   173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVR 232
              + TL A+I  T +VYV ++ GW + F   +VA  I       G P YR + PG SPL R
Sbjct:   236 LSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTR 295

Query:   233 VAQVIVVAIKNRKLSLPDNPE-ELYEINKIER-VGTEERIPHTNQFRCLDKAAI-VPKDS 289
             VAQV+V A + R  +   +    LYE+  ++  +    +IPH+N F  LDKAA+ + +D 
Sbjct:   296 VAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDG 355

Query:   290 TAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKV 349
                +PW++CTVTQVEEVKIL R++PI   TI+++  L +  TLSV Q   ++  +  +K+
Sbjct:   356 LEPSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKL 415

Query:   350 PTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGF 409
             P   +PV P L + +++ +Y  +FVP  R+ITG+P G +QLQRVG+GL +S+IS+  AG 
Sbjct:   416 PVTCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGL 475

Query:   410 VEVKRRN-------AFN---QSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPA 459
              E  RR+        FN   Q P   ++ +WL  QYC+ GIA++F  VGLLEF Y+EAP 
Sbjct:   476 FENYRRHYAIQNGFEFNFLTQMP--DLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 533

Query:   460 GMRT 463
              M++
Sbjct:   534 AMKS 537

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 167/465 (35%), Positives = 257/465 (55%)

Query:     9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLC 68
             K+ G ++AC F+      E + +     +++ Y+ +E+H     A++ +  + G+ ++  
Sbjct:    51 KKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITP 110

Query:    69 LVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC-GKSSCL-KGAIAAX 126
             L+G  I+D+Y  R+ T   F  +  + + +LT+ A    L P  C G ++ L   A    
Sbjct:   111 LIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQ 170

Query:   127 XXXXXXXXXXXXXXNRGTLPAL---GAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183
                             G  P +   GA QFD+ DP+     AS+FN++ F+  + + I  
Sbjct:   171 YAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISS 230

Query:   184 TAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKN 243
             T +V+V  + GW LGFLI +V   + + +  IG P YR Q+PG SP+ RV QV+V A + 
Sbjct:   231 TLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRK 290

Query:   244 RKLSLPDNPEELYEIN-KIERVGTEERIPHTNQFRCLDKAAIVPK-DSTAAA---PWRVC 298
              KL+LP++   LYE   K   +    +I HT+ ++ LDKAA++ + +S + A   PW++C
Sbjct:   291 LKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLC 350

Query:   299 TVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLP 358
             TVTQVEEVK L RM PI AS I+ +   +Q+ TL V QG  M+  + S ++P  S  V  
Sbjct:   351 TVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFD 410

Query:   359 LLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAF 418
              L + I IPIY+   VPF R+ TG P G+T LQR+G+GL LSV+S+  A  VE  R    
Sbjct:   411 TLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA 470

Query:   419 NQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
                    +S+FW   QY + GIA++F F+G +EFFY E+P  MR+
Sbjct:   471 QDFVA--MSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 165/476 (34%), Positives = 263/476 (55%)

Query:     4 KVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGS 63
             K A   + G ++AC F+      E + +     +++ Y + +M+ +   AS +++N+ G+
Sbjct:    19 KPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGT 78

Query:    64 TFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI 123
              +   L+G FI+D YL R+ T   F  + +  + +LTI A    L  P C   +C   A 
Sbjct:    79 CYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETC--HAT 135

Query:   124 AAXXXXXXXXXXXXXXXNRGTLPAL---GAGQFDENDPKGAKALASYFNFYLFATTLAAM 180
             A                  G  P +   GA QFD+ D K  ++ +S+FN++ F   + AM
Sbjct:   136 AGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAM 195

Query:   181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVA 240
             I  + +V++ ++ GW  G  + +VA  I ++    G  FYR+Q+PG SPL R+ QVIV +
Sbjct:   196 IASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVAS 255

Query:   241 IKNRKLSLPDNPEELYEINKIER--VGTEERIPHTNQFRCLDKAAI-VPKDSTAAAP--- 294
              +  K+ +P++   LYE    E   +G+  ++ HT      DKAA+    D+  AA    
Sbjct:   256 CRKSKVKIPEDESLLYENQDAESSIIGSR-KLEHTKILTFFDKAAVETESDNKGAAKSSS 314

Query:   295 WRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLG-SIKVPTPS 353
             W++CTVTQVEE+K L R++PI A+ I+  +  +Q+ T+ V QG  +D  +G + K+P+ S
Sbjct:   315 WKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSAS 374

Query:   354 IPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVK 413
             + +   L +    P+Y+ L VPFARK TGH  G TQLQR+G+GLV+S+ SM  AG +EV 
Sbjct:   375 LSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVA 434

Query:   414 R------RNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
             R       N +N+     +++FW   QY + G A++FTF+G LEFFY +AP  MR+
Sbjct:   435 RLNYVQTHNLYNEETIP-MTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRS 489

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 167/465 (35%), Positives = 256/465 (55%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG  A +FV V+  LEN+ F+AN  ++VLY   +M F  +GA+N +T F G+ F L L+G
Sbjct:    58 GGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLALLG 117

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAXXXXXX 131
             GF++D + + F   LV   +E L L++LT+QA+  S  P    +     G          
Sbjct:   118 GFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEP--WSRVFLFVGLYLVALGVGG 175

Query:   132 XXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191
                       +G+LP  GA QFDE    G +  + +FN+++F+ +  A+I VT +V++  
Sbjct:   176 I---------KGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWLED 226

Query:   192 DQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAI--KNRKLSLP 249
             ++GW  GF +S+ A LI +     G   YR++ P  SP+  + +V+  A+  K +K    
Sbjct:   227 NKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRRTS 286

Query:   250 DNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKIL 309
                   +  N  +   T++     + F       +V +  +   P R CT  QV++VKI+
Sbjct:   287 RIVVTCHTRNDCDDSVTKQNCDGDDGFLGSFLGEVVRERESLPRPLR-CTEEQVKDVKIV 345

Query:   310 ARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIY 369
              +++PI  STI++N CLAQL T SV Q + M+ +LGS  VP  ++PV P++FM IL P Y
Sbjct:   346 IKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTY 405

Query:   370 EFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAF------NQ--- 420
               L +P ARK T    GIT LQR+G GLVLS+++M +A  VE KR++        N    
Sbjct:   406 NHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSS 465

Query:   421 --SPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
               S P  I+  W++ QY   G AD+FT  G++EFF+ EAP+ MR+
Sbjct:   466 YSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRS 510

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 161/471 (34%), Positives = 264/471 (56%)

Query:     9 KQK-GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLL 67
             K+K G ++AC F+      E + +   G ++V Y ++ ++   A A+N +TN+ G+ ++ 
Sbjct:    22 KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYIT 81

Query:    68 CLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI-AAX 126
              L+G FI+D YL R+ T   F  + V  + +LT+ A    L P +C   +C   +   A 
Sbjct:    82 PLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAV 141

Query:   127 XXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
                            +  + + GA QFDEND       +S+FN++ F+  + A+I  T +
Sbjct:   142 FFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVL 201

Query:   187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKL 246
             V++ ++ GW  GF + +VA +I +     G  FYR+Q+PG SPL R+ QVIV A +   +
Sbjct:   202 VWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISV 261

Query:   247 SLPDNPEELYEINKIE-RVGTEERIPHTNQFRCLDKAAIVPK-DSTAAA---PWRVCTVT 301
              +P++   L+E    E  +    ++ HT+  +  DKAA+  + DS       PWR+C+VT
Sbjct:   262 KVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVT 321

Query:   302 QVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLG-SIKVPTPSIPVLPLL 360
             QVEE+K +  ++P+ A+ I+  T  +Q+ T+ V QG  MD  +G + ++P+ S+ +   +
Sbjct:   322 QVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTV 381

Query:   361 FMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEV------KR 414
              +    P+Y+   +P ARK T +  G TQLQR+G+GLV+S+ +M  AG +EV      K 
Sbjct:   382 SVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKT 441

Query:   415 RNAFNQSPPKQI--SLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463
              NA++Q   KQI  S+FW   QY + G A++FTF+G LEFFY +AP  MR+
Sbjct:   442 HNAYDQ---KQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRS 489

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 160/468 (34%), Positives = 255/468 (54%)

Query:    12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVG 71
             GG+ +   +  + A+E +  +  G+++V Y    MH   A A+NT+TNF G++F+LCL+G
Sbjct:    29 GGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLG 88

Query:    72 GFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG---KSSC--LKGAIAAX 126
             GFI+DT+L R+ T  +F  ++   + +LT+      L PP C     S C    G     
Sbjct:    89 GFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTV 148

Query:   127 XXXXXXXXXXXXXXNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
                            + ++   G+ QFDE +PK    +  +FN + F   + +++ VT +
Sbjct:   149 LYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVL 208

Query:   187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKL 246
             VYV  D G   G+ I + A ++ L     G   YR ++   SP+ +VA VIV A +NRKL
Sbjct:   209 VYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKL 268

Query:   247 SLPDNPEELYEINKIERV-GT---EERIPHTNQFRCLDKAAIVPKDSTAAA----PWRVC 298
              LP +P  LY+++ I    G+   ++++PHT QFR LDKAAI  +++   +     W + 
Sbjct:   269 ELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLS 328

Query:   299 TVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLP 358
             T+T VEEVK + RM+PI A+ I+  T  AQL TLSV Q   +D  +GS ++P  S+ V  
Sbjct:   329 TLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFY 388

Query:   359 LLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKR-RNA 417
             +  + +   +Y+ + +   +K+  +P G+  LQR+G+GL    ++M +A  VE+KR R A
Sbjct:   389 VGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTA 448

Query:   418 FNQSPP-KQISL-FWLSF-QYCIFGIADMFTFVGLLEFFYKEAPAGMR 462
                 P  K + L F+L   QY I GI +   + G L+FF +E P GM+
Sbjct:   449 HAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMK 496

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022502001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (590 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
pfam00854	372	pfam00854, PTR2, POT family	7e-46
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	4e-16
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-09

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  163 bits (414), Expect = 7e-46
 Identities = 100/360 (27%), Positives = 152/360 (42%), Gaps = 29/360 (8%)

Query: 119 LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178
           L     A FY  LYL +LG GG +  + A GA QFDE           +F+++ F+    
Sbjct: 27  LSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAG 83

Query: 179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGES--PLVRVAQV 236
           ++I      Y+  + G+ LGF + +V  L+ L+   +G   Y+ + P       V +A +
Sbjct: 84  SLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFI 143

Query: 237 IVVAIKNRKLSLPDNPEELYE-INKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPW 295
           I  A KNRKL LP +   LY  + K  +    +   HT     +                
Sbjct: 144 ITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQTKVHTR-VAVIFIPLPKFWALF----- 197

Query: 296 RVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGS-IKVPTPSI 354
                  V  ++ +  M+PI A  I+ +    QL TL V Q   MD  +    ++P  S 
Sbjct: 198 --DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASF 255

Query: 355 PVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKR 414
                L + IL+PI +FL  P  R       G+T  QR G+G+ + +++  +A  VE KR
Sbjct: 256 QSFNPLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKR 311

Query: 415 R---NAFNQ-SPPKQISLF--WLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHL 468
                A    SP   + LF  W   +  I G+       G LEF     P+ M +L   L
Sbjct: 312 PRYAAALGLTSPGWTVPLFILWSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLL 367

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 82/407 (20%), Positives = 149/407 (36%), Gaps = 62/407 (15%)

Query: 38  MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97
           +VLY  N + ++   A+N    F    +L  L+G  I+D++L +F T L    + V+   
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 98  MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND 157
           + ++ A     HP     +  L G             +L   G  G  P + A   D+ +
Sbjct: 70  LASLGAVPSLGHPLH--DALSLVG------------LALIALGTGGIKPCVSAFGGDQFE 115

Query: 158 PKGAKALASYFNFYLFATTLAAMIGVT------AIVYVFIDQG-WWLGFLISSVATLIGL 210
            +       +F+F+ FA    ++            V  F  Q  + L F +  +   + L
Sbjct: 116 ERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLAL 175

Query: 211 IALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERI 270
           I  ++G   Y+ + P  + + +V + IV A+K                    R  T    
Sbjct: 176 IVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKK-------------------RFRTRSED 216

Query: 271 PHTNQFRCLDKAA-IVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQL 329
                +  LD AA                    +   K L R++ +     +      Q 
Sbjct: 217 WPRLHW--LDWAAPKYLIR-------------MIRSTKRLLRVLFLFIPLPMFWALFDQQ 261

Query: 330 QTLSVTQGAYMDPRLGSIKV-PTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGIT 388
            +    Q   MD  +G   + P     V PLL + IL+PI++++  P   K        T
Sbjct: 262 GSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVL-ILVPIFDYVVYPALAKCG---TRFT 317

Query: 389 QLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQY 435
            L+++ VG++L+ ++  +A  ++ K      + P   I  F      
Sbjct: 318 SLRKMAVGMLLAALAFAVAALLQNKINPTLPEEPSASII-FLQVLNT 363

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 70/436 (16%), Positives = 144/436 (33%), Gaps = 50/436 (11%)

Query: 38  MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97
           +     + + FD   A+   + +    +L  ++GG+++D  L    T ++   L  +  +
Sbjct: 48  LYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL 107

Query: 98  MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND 157
           +L I            G             Y  L L  +G G  +  + +L    + ++D
Sbjct: 108 VLAI--------SSVSGPGG---------LYIGLALIIVGTGLFKPNISSLLGELYPKDD 150

Query: 158 PKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGK 217
           P+        F  +     + ++I       + I+ GW +GF +++V  +IGL+   +G+
Sbjct: 151 PRRDGG----FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206

Query: 218 PFYRIQQPGESP--LVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQ 275
                   G      +    ++ V      + L      L   N    V           
Sbjct: 207 RHV-KGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLL--------- 256

Query: 276 FRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVT 335
                  +I+      A  +R   V   +E + L   +P+    +I      Q+ +    
Sbjct: 257 -----VISILIAIIYFAEAFRSPKVF--DERRRLLAAIPLFLFAVIFWALYEQMGSSLNL 309

Query: 336 QGAYMDPR-LGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVG 394
                  R +   +VP      L   F+ +  PI   L+    R              + 
Sbjct: 310 YADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG------NKQPSTPIK 363

Query: 395 VGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFY 454
             L L +  +     +           P   +S++WL   Y +    ++F     L    
Sbjct: 364 FALGLILAGLGFLILLLAGIWFG---GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVT 420

Query: 455 KEAPAGMRTLLLHLHF 470
           K AP  +++ ++ + F
Sbjct: 421 KLAPPALKSFIMAMWF 436

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK12382	392	putative transporter; Provisional	99.91
PRK05122	399	major facilitator superfamily transporter; Provisi	99.91
PRK10054	395	putative transporter; Provisional	99.91
PRK10504	471	putative transporter; Provisional	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK03545	390	putative arabinose transporter; Provisional	99.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
TIGR00893	399	2A0114 d-galactonate transporter.	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.89
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.89
TIGR00895	398	2A0115 benzoate transport.	99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.89
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.88
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.88
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.88
PRK09874	408	drug efflux system protein MdtG; Provisional	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.87
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.87
PRK11663	434	regulatory protein UhpC; Provisional	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.87
PRK10489	417	enterobactin exporter EntS; Provisional	99.87
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.87
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
PRK10642	490	proline/glycine betaine transporter; Provisional	99.86
PRK09705	393	cynX putative cyanate transporter; Provisional	99.86
PRK11043	401	putative transporter; Provisional	99.86
PRK03633	381	putative MFS family transporter protein; Provision	99.86
PRK03699	394	putative transporter; Provisional	99.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.86
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.85
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.85
PRK10091	382	MFS transport protein AraJ; Provisional	99.85
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.85
TIGR00898	505	2A0119 cation transport protein.	99.84
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.84
PLN00028	476	nitrate transmembrane transporter; Provisional	99.84
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.84
PRK09952	438	shikimate transporter; Provisional	99.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.84
PRK09528	420	lacY galactoside permease; Reviewed	99.84
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.84
TIGR00901	356	2A0125 AmpG-related permease.	99.84
PRK15075	434	citrate-proton symporter; Provisional	99.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.83
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.83
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.83
PRK03893	496	putative sialic acid transporter; Provisional	99.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.83
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.82
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.82
PRK10133	438	L-fucose transporter; Provisional	99.82
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.8
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.8
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.8
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.79
KOG2532	466	consensus Permease of the major facilitator superf	99.79
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.78
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.78
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.77
KOG0254	513	consensus Predicted transporter (major facilitator	99.77
PRK11010	491	ampG muropeptide transporter; Validated	99.75
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.75
KOG0569	485	consensus Permease of the major facilitator superf	99.74
PRK11902	402	ampG muropeptide transporter; Reviewed	99.71
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.71
PRK09848	448	glucuronide transporter; Provisional	99.69
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.66
PRK10429	473	melibiose:sodium symporter; Provisional	99.66
TIGR00805	633	oat sodium-independent organic anion transporter.	99.65
PF13347	428	MFS_2: MFS/sugar transport protein	99.65
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.64
PRK09669	444	putative symporter YagG; Provisional	99.63
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.6
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.59
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.59
KOG2615	451	consensus Permease of the major facilitator superf	99.57
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.57
PTZ00207	591	hypothetical protein; Provisional	99.53
PRK10642	490	proline/glycine betaine transporter; Provisional	99.53
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.52
PRK11462	460	putative transporter; Provisional	99.52
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
PRK15011	393	sugar efflux transporter B; Provisional	99.5
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.49
KOG2533	495	consensus Permease of the major facilitator superf	99.47
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.47
PRK05122	399	major facilitator superfamily transporter; Provisi	99.45
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.44
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.43
PRK09952	438	shikimate transporter; Provisional	99.42
PRK03699	394	putative transporter; Provisional	99.42
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.41
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.4
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.39
PRK03893	496	putative sialic acid transporter; Provisional	99.38
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.38
COG2211	467	MelB Na+/melibiose symporter and related transport	99.37
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.37
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
PRK09705	393	cynX putative cyanate transporter; Provisional	99.36
PRK12382	392	putative transporter; Provisional	99.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.35
PRK03545	390	putative arabinose transporter; Provisional	99.34
PRK10489	417	enterobactin exporter EntS; Provisional	99.34
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.33
PRK11663	434	regulatory protein UhpC; Provisional	99.33
PRK09528	420	lacY galactoside permease; Reviewed	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.33
PRK03633	381	putative MFS family transporter protein; Provision	99.32
TIGR00891	405	2A0112 putative sialic acid transporter.	99.32
TIGR00893	399	2A0114 d-galactonate transporter.	99.31
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.31
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.28
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.28
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.26
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.26
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.26
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.25
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.24
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.23
PRK10504	471	putative transporter; Provisional	99.22
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.2
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.2
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.18
PRK12307	426	putative sialic acid transporter; Provisional	99.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.17
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.16
PRK10091	382	MFS transport protein AraJ; Provisional	99.16
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.15
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.15
TIGR00900	365	2A0121 H+ Antiporter protein.	99.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.14
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.13
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.12
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.11
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.1
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.09
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.07
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.06
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.06
PRK11902	402	ampG muropeptide transporter; Reviewed	99.06
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.05
TIGR00895	398	2A0115 benzoate transport.	99.05
PRK10133	438	L-fucose transporter; Provisional	99.04
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.03
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.03
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.03
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.01
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.01
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.01
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.01
PRK10054	395	putative transporter; Provisional	99.01
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.01
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.98
PRK09848	448	glucuronide transporter; Provisional	98.97
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.96
KOG2563	480	consensus Permease of the major facilitator superf	98.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.93
PF13347	428	MFS_2: MFS/sugar transport protein	98.93
TIGR00901	356	2A0125 AmpG-related permease.	98.92
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.91
TIGR00898	505	2A0119 cation transport protein.	98.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.87
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.85
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.81
PRK09669	444	putative symporter YagG; Provisional	98.8
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.8
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.78
PRK11043	401	putative transporter; Provisional	98.76
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.75
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.73
KOG3626	735	consensus Organic anion transporter [Secondary met	98.73
KOG2532	466	consensus Permease of the major facilitator superf	98.7
PRK10429	473	melibiose:sodium symporter; Provisional	98.69
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.69
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.67
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.66
KOG0569	485	consensus Permease of the major facilitator superf	98.6
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.58
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.56
COG2211	467	MelB Na+/melibiose symporter and related transport	98.5
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.48
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.47
PRK11462	460	putative transporter; Provisional	98.47
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.46
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.41
COG0477	338	ProP Permeases of the major facilitator superfamil	98.34
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.29
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.27
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.27
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.24
PF12832	77	MFS_1_like: MFS_1 like family	98.24
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.21
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.21
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.19
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.19
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.13
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.06
KOG3762	618	consensus Predicted transporter [General function	98.05
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.96
KOG2533	495	consensus Permease of the major facilitator superf	97.83
KOG3762	618	consensus Predicted transporter [General function	97.81
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.79
KOG0254	513	consensus Predicted transporter (major facilitator	97.71
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.69
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.65
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.61
TIGR00805	633	oat sodium-independent organic anion transporter.	97.55
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.51
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.45
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.41
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.34
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.92
KOG2615	451	consensus Permease of the major facilitator superf	96.9
PTZ00207	591	hypothetical protein; Provisional	96.89
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.89
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.83
KOG0637	498	consensus Sucrose transporter and related proteins	96.68
PRK03612	521	spermidine synthase; Provisional	96.61
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.57
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.49
KOG2563	480	consensus Permease of the major facilitator superf	96.38
KOG3626	735	consensus Organic anion transporter [Secondary met	95.9
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.63
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.43
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.69
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	93.47
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.73
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.6
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	91.52
KOG2325	488	consensus Predicted transporter/transmembrane prot	89.38
KOG0637	498	consensus Sucrose transporter and related proteins	89.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	88.64
KOG3810	433	consensus Micronutrient transporters (folate trans	87.72
KOG3098	461	consensus Uncharacterized conserved protein [Funct	87.06
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.32
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	85.57

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-45  Score=385.39  Aligned_cols=463  Identities=41%  Similarity=0.691  Sum_probs=416.7

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHH
Q 011743           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (478)
Q Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   89 (478)
                      .++.|+++.+++..+.+|++++|++...+..|+..++|.+...+.-....+.......++++++++|.|+||++++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            55778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCC----CCCcc--ccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhh
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDC----GKSSC--LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~  163 (478)
                      .+..+|.+++......+.+.|+.+    +.+.|  +.......++.++.+.++|.|+.+|+..++.+||+++.++++++.
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999988888888888653    22122  334466788899999999999999999999999999888888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHh
Q 011743          164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKN  243 (478)
Q Consensus       164 r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (478)
                      +.+.|+|+|+..++|..++-.+..++.++.+|.+.|.++.+++++++++++.+.+.++..+|.+++..++.+++..+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            89999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCC----CCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 011743          244 RKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDS----TAAAPWRVCTVTQVEEVKILARMMPILAST  319 (478)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~  319 (478)
                      ++...+..++++..     ........++.+.++++|+++++.+++    ...+||+.++.++|||.|...+.++++.+.
T Consensus       272 ~~~~~~~~~~~~~~-----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~  346 (571)
T KOG1237|consen  272 RKAVVSLDPEELYY-----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT  346 (571)
T ss_pred             HhccCCCcchhccc-----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence            88877665443311     111112334467889999999987753    345789999999999999999999999999


Q ss_pred             HHHHHhHhhcchhhhhhhcccCCCCCC-cccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHH
Q 011743          320 IIMNTCLAQLQTLSVTQGAYMDPRLGS-IKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLV  398 (478)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~  398 (478)
                      ++++.++.|+.+.+++|+..||+.+++ +.+|++.++.+..+...+..|+.++...|+.||.++++.++++..|+.+|++
T Consensus       347 i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~  426 (571)
T KOG1237|consen  347 IIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLV  426 (571)
T ss_pred             HHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccch
Confidence            999999999999999999999999988 9999999999999999999999999999999999887668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccC--CCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhcc
Q 011743          399 LSVISMTIAGFVEVKRRNAFNQ--SPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA  476 (478)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg  476 (478)
                      +..++|...+.+|..|.+...+  +.++++|.+|+++||+++|++|.+..++.+|+.|+++|++||+.+++++.+..++|
T Consensus       427 ~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G  506 (571)
T KOG1237|consen  427 LSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVG  506 (571)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887754  22357999999999999999999999999999999999999999999999999988


Q ss_pred             C
Q 011743          477 T  477 (478)
Q Consensus       477 ~  477 (478)
                      +
T Consensus       507 ~  507 (571)
T KOG1237|consen  507 N  507 (571)
T ss_pred             H
Confidence            6

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-45  Score=364.02  Aligned_cols=415  Identities=18%  Similarity=0.304  Sum_probs=331.8

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccC----CchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHH
Q 011743            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH----FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFAT   84 (478)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg----~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~   84 (478)
                      ..-++||.++.++..|++||++|||+...+..|+..+++    +|++++..+.+.|....++.++++||++||++|+||+
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            334689999999999999999999999999999999888    9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhh
Q 011743           85 CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL  164 (478)
Q Consensus        85 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r  164 (478)
                      +..|.++.++|.++++.++                 ..+...++++++++++|.|+++|+++++++|++|++|||    |
T Consensus        95 I~lGail~~iGh~~L~~~~-----------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----r  153 (498)
T COG3104          95 IVLGAILMAIGHLVLAISS-----------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----R  153 (498)
T ss_pred             HHHHHHHHHHHHHHHhccc-----------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----c
Confidence            9999999999999998763                 125677899999999999999999999999999999987    8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCC--CCCch------hHHHHH
Q 011743          165 ASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQP--GESPL------VRVAQV  236 (478)
Q Consensus       165 ~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~  236 (478)
                      +.+++++|+++|+|+.++|.+++++.+.+||+..|.++++-+.++++.++++++.......  +..+.      .....+
T Consensus       154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (498)
T COG3104         154 DGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGL  233 (498)
T ss_pred             CCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHH
Confidence            8999999999999999999999999999999999999999999999999998876655432  11111      111111


Q ss_pred             HHHHHHhc-CCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 011743          237 IVVAIKNR-KLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPI  315 (478)
Q Consensus       237 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  315 (478)
                      +....+-- ...+..+....+ .......-         .. .+-....         .   .++.+ +||||++..+++
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~~-~~~~~i~~---------~~-~~~~~~~---------~---~~~~~-~er~r~~~~~~L  289 (498)
T COG3104         234 VVMILAALLTLLLNQNTFSGV-LLVISILI---------AI-IYFAEAF---------R---SPKVF-DERRRLLAAIPL  289 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HH-HHHHHHh---------c---cCccH-HHHHHHHHHHHH
Confidence            11111100 000000000000 00000000         00 0000000         0   01223 679999999999


Q ss_pred             HHHHHHHHHhHhhcchhhhhhh-cccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHH
Q 011743          316 LASTIIMNTCLAQLQTLSVTQG-AYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVG  394 (478)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~  394 (478)
                      ++...+||+++.|..+.+..++ ++.+++..|+.+|+++++.+|++.+++++|+.+++++|+.++..    +++...++.
T Consensus       290 fl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~----~ps~~~KFa  365 (498)
T COG3104         290 FLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK----QPSTPIKFA  365 (498)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC----CCCcchHHH
Confidence            9999999999999999887777 45677866699999999999999999999999999999877752    479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhh
Q 011743          395 VGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCH  474 (478)
Q Consensus       395 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~  474 (478)
                      +|+++++++++.........-   +++  +..|.+|+++.|+++++||.+++|.+++++++.+|+++++..|+.|.+.+.
T Consensus       366 lGl~l~g~~fl~l~~~~~~~~---~~~--~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a  440 (498)
T COG3104         366 LGLILAGLGFLILLLAGIWFG---GPS--GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA  440 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc---CCC--CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            999999999988887744311   111  247999999999999999999999999999999999999999999999988


Q ss_pred             ccC
Q 011743          475 LAT  477 (478)
Q Consensus       475 lg~  477 (478)
                      .|+
T Consensus       441 ~~~  443 (498)
T COG3104         441 AGQ  443 (498)
T ss_pred             HHH
Confidence            875

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.6e-40  Score=344.79  Aligned_cols=410  Identities=13%  Similarity=0.195  Sum_probs=310.6

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHH
Q 011743            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (478)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   88 (478)
                      ..++|||.++.+++.+++||++||++..++++|+++++|++..+++++.+.+....++.++++|+++||++||||+++++
T Consensus         8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207          8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence            44679999999999999999999999999999999999999999999999999999999999999999978999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHH
Q 011743           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (478)
Q Consensus        89 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~  168 (478)
                      .++++++++++.++..                  ....++++|+++++|.|+++|+..++++|++|+++++    |++++
T Consensus        88 ~~~~~~g~~~~~~~~~------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~  145 (489)
T PRK10207         88 AIVLAIGYFMTGMSLL------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAF  145 (489)
T ss_pred             HHHHHHHHHHHHHhcc------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcch
Confidence            9999999999887641                  2334668899999999999999999999999987633    68899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCCchhHHHHHH--------H
Q 011743          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ--QPGESPLVRVAQVI--------V  238 (478)
Q Consensus       169 ~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~  238 (478)
                      +++|++.|+|..+||.+++++.++.|||+.|+++++.++++++.+...++.+++.  +|++++.+.....+        .
T Consensus       146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~  225 (489)
T PRK10207        146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMI  225 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998776666666666666554432  22222222111100        0


Q ss_pred             HHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHH
Q 011743          239 VAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILAS  318 (478)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~  318 (478)
                      ....... +..............  .    .     ...+.....               ..++ .++++.+..+.++..
T Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~~--i----~-----~~~f~~~~~---------------~~~~-~~r~r~~~~~~l~~~  277 (489)
T PRK10207        226 FVCAWLM-HNVEVANLVLIVLSI--V----V-----TIIFFREAF---------------KLDK-TGRNKMFVAFVLMLE  277 (489)
T ss_pred             HHHHHHH-hhhhHHHHHHHHHHH--H----H-----HHHHHHHHh---------------cCCH-HHHHHHHHHHHHHHH
Confidence            0000000 000000000000000  0    0     000000000               0001 335556666777788


Q ss_pred             HHHHHHhHhhcchhhhhhhc-ccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHH
Q 011743          319 TIIMNTCLAQLQTLSVTQGA-YMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGL  397 (478)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~  397 (478)
                      ..++|.++.|..+.+..+.. +.+.+..|+.++++.++++|++.+++..|+.+++++++.+|..    .+++..++.+|+
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~----~~~~~~k~~~G~  353 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK----DLSMPMKFTLGM  353 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC----CCCcHHHHHHHH
Confidence            99999999999877766665 5677777888899999999999999999999987777666542    369999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          398 VLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      ++.+++++.....+....+  .+.   ..+.||+++.+++.++||.+.+|+.++++++.+|++++|.+||++++.+++|+
T Consensus       354 ~l~~~~~~~~~~~~~~~~~--~~~---~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~  428 (489)
T PRK10207        354 FLCSLGFLTAAAAGMWFAD--AQG---LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAF  428 (489)
T ss_pred             HHHHHHHHHHHHHHHhhcC--CCC---ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            9999998776654322111  111   26789999999999999999999999999999999999999999999988875

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=4.4e-39  Score=332.53  Aligned_cols=407  Identities=15%  Similarity=0.192  Sum_probs=309.1

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHH
Q 011743           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (478)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~   90 (478)
                      .+|||.++.+++.+++|++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||++.++.+
T Consensus         5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i   84 (493)
T PRK15462          5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL   84 (493)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999993399999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      +.+++.+++....                  .+...++++..+..+|.|..+|+.+++++|++|+++++    |++++++
T Consensus        85 l~~lg~lll~~~~------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i  142 (493)
T PRK15462         85 LMAIGHVVLGASE------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSL  142 (493)
T ss_pred             HHHHHHHHHHHhh------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehH
Confidence            9999987665432                  12233556666777889999999999999999987544    8999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCC-CCCchh--HHHH----HH-HHH--
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQP-GESPLV--RVAQ----VI-VVA--  240 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~----~~-~~~--  240 (478)
                      +|...|+|+.++|.+++++.+.+||++.|.++++.++++++.++..++.+.+... ++++..  +...    .+ ...  
T Consensus       143 ~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (493)
T PRK15462        143 MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVA  222 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999988999999999888777777777776655443211 111111  0000    00 000  


Q ss_pred             ---HHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 011743          241 ---IKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILA  317 (478)
Q Consensus       241 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  317 (478)
                         ..............+....       ....-   -+-+..+.                 ..+.+||||+...+.++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~-----------------~~~~~er~r~~~~~~l~~  275 (493)
T PRK15462        223 TPALITVLFWKEWSVYALIVAT-------IIGLG---VLAKIYRK-----------------AENQKQRKELGLIVTLTF  275 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHh-----------------cCCHHHHhhHHHHHHHHH
Confidence               0000000000000000000       00000   00000000                 011367889889999999


Q ss_pred             HHHHHHHhHhhcchhhhhhh-cccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHH
Q 011743          318 STIIMNTCLAQLQTLSVTQG-AYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVG  396 (478)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G  396 (478)
                      ...+||+.+.|.++.+...+ .++|+++.|+.+|+++++++|++.+++++|+...++.++.||..    .++...|+.+|
T Consensus       276 ~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~----~~s~~~Kfa~g  351 (493)
T PRK15462        276 FSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR----TVRIWGKFALG  351 (493)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC----CCCcHHHHHHH
Confidence            99999999999988766555 57899999999999999999999999999999998887765432    35899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHh-hc
Q 011743          397 LVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHC-HL  475 (478)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~-~l  475 (478)
                      ++++++++++..+....    .+++|  .++.+|++..++++++||.+.+|..++.+++.+|++.+|+.||+|.+.. .+
T Consensus       352 ~~~~g~~f~~l~~~~~~----~~~~~--~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~  425 (493)
T PRK15462        352 LGLMSAGFCILTLSARW----SAMYG--HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI  425 (493)
T ss_pred             HHHHHHHHHHHHHHHhh----cCCCC--CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            99999999888776422    11122  3789999999999999999999999999999999999999999998744 45


Q ss_pred             c
Q 011743          476 A  476 (478)
Q Consensus       476 g  476 (478)
                      |
T Consensus       426 ~  426 (493)
T PRK15462        426 A  426 (493)
T ss_pred             H
Confidence            4

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2e-38  Score=331.20  Aligned_cols=413  Identities=14%  Similarity=0.182  Sum_probs=310.4

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccc--cCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHH
Q 011743            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE--MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL   86 (478)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~   86 (478)
                      ...++||.++.+++.+++|++++|++.++++.|++++  +|++..+++.+.+.+.+...++++++|+++||++||||++.
T Consensus         4 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924         4 TFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            4467999999999999999999999999999999988  99999999999999999999999999999999679999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhh
Q 011743           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (478)
Q Consensus        87 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~  166 (478)
                      ++.++.+++.+++..+.                   +...+++++.+.|+|.|+..|+..++++|++|++++   .+|++
T Consensus        84 ~~~~~~~~g~~~~~~~~-------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~  141 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSI-------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDG  141 (475)
T ss_pred             HHHHHHHHHHHHHHhcc-------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccc
Confidence            99999999998887653                   456777899999999999999999999999987652   12788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhH----HHH-------
Q 011743          167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVR----VAQ-------  235 (478)
Q Consensus       167 ~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------  235 (478)
                      +++++|.+.|+|..+||.+++++.+..||++.|+++++.++++++.+...++.+++.++++++..+    ..+       
T Consensus       142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (475)
T TIGR00924       142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLA  221 (475)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHH
Confidence            999999999999999999999999888999999998877777776666666554433322211110    000       


Q ss_pred             HHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 011743          236 VIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPI  315 (478)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  315 (478)
                      .+....+...................-   ... .      .+.+..         ..|    +.+ .+++++....+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~------~~~~~~---------~~~----~~~-~~~~~~~~~~l~l  277 (475)
T TIGR00924       222 ALALVFFCAWLMHHVVIANILLMTVTL---AVI-I------FFFRLA---------FKP----RLD-AVARNKMYAYIVL  277 (475)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHH---HHH-H------HHHHHH---------Hhc----cCC-HHHHhHHHHHHHH
Confidence            000001100000000000000000000   000 0      000000         000    001 1334444567888


Q ss_pred             HHHHHHHHHhHhhcchhhhh-hhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHH
Q 011743          316 LASTIIMNTCLAQLQTLSVT-QGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVG  394 (478)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~  394 (478)
                      ++...++|+.+.|..+.+.. +..++|.+.+++.+|+++++++|++.+++.+|+.++++.++.||..    ..+...|+.
T Consensus       278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~----~~~~~~k~~  353 (475)
T TIGR00924       278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK----DPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC----CCCcHHHHH
Confidence            99999999999999886544 4456788888889999999999999999999999987665555421    257778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhh
Q 011743          395 VGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCH  474 (478)
Q Consensus       395 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~  474 (478)
                      +|+++.++++...++....    .++.  .+.+.||+++++++.++||.+..|..++++++.+|+++||+++|++.+...
T Consensus       354 ~G~~l~~~~~~~~~~~~~~----~~~~--~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~  427 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWF----ADAG--GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA  427 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhh----cCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999999999988876321    1111  237999999999999999999999999999999999999999999999888


Q ss_pred             ccC
Q 011743          475 LAT  477 (478)
Q Consensus       475 lg~  477 (478)
                      +|+
T Consensus       428 ~g~  430 (475)
T TIGR00924       428 MGS  430 (475)
T ss_pred             HHH
Confidence            774

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=7e-37  Score=321.38  Aligned_cols=404  Identities=15%  Similarity=0.226  Sum_probs=303.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      ++||.++.+++.+++|++++|++..+++.|+++++|++..+++++.+.+.......++++|+++||++|||+++.++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999888888888889999999944999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+++.+++.++.+                  +...++++++++++|.|...|+..++++|++|+++++    |+++++++
T Consensus        98 ~~ig~~l~~~~~~------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~  155 (500)
T PRK09584         98 LAIGYALVAWSGH------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMY  155 (500)
T ss_pred             HHHHHHHHHHhcc------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHH
Confidence            9999888876531                  4456778899999999999999999999999876533    56789999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCCchhHHH------HHHHHHHHh
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ--QPGESPLVRVA------QVIVVAIKN  243 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~  243 (478)
                      |.+.|+|..+||.+++++.+..|||+.|+++++.++++++.++..++.+++.  ++++++.+...      .+.......
T Consensus       156 ~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (500)
T PRK09584        156 YMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIA  235 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999989999999998877777766655554433332  22222222111      111111110


Q ss_pred             c-CCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 011743          244 R-KLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIM  322 (478)
Q Consensus       244 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~  322 (478)
                      . .+..++.........+..              ...+....            .+. .+.+|+++....+.+++..++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~i~f  288 (500)
T PRK09584        236 TWLLHNQEIARMALGVVALG--------------IVVIFGKE------------AFA-MKGAARRKMIVAFILMLEAIIF  288 (500)
T ss_pred             HHHHhcchHHHHHHHHHHHH--------------HHHHHHHH------------Hhh-cCHHHHHHHHHHHHHHHHHHHH
Confidence            0 000110000000000000              00000000            000 0124566666677788888999


Q ss_pred             HHhHhhcchhhhhhhc-ccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHH
Q 011743          323 NTCLAQLQTLSVTQGA-YMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSV  401 (478)
Q Consensus       323 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~  401 (478)
                      |+.+.|.++.+..+.. +.+++..|+.+++++++++|++.+++.+|+.++++.++.+|       +++.+++.+|+++++
T Consensus       289 ~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~  361 (500)
T PRK09584        289 FVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCS  361 (500)
T ss_pred             HHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHH
Confidence            9999999998877664 46777778889999999999999999999999876655444       478899999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          402 ISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      ++++...+....    .+++  ..++.+|+++++++.++||++++|..++++++.+|+++||++||++.+...+|+
T Consensus       362 l~f~~l~~~~~~----~~~~--~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~  431 (500)
T PRK09584        362 GAFLVLPLGAKF----ANDA--GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAA  431 (500)
T ss_pred             HHHHHHHHHHHh----cCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            999988776432    1111  247888999999999999999999999999999999999999999987776653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1.5e-30  Score=277.66  Aligned_cols=339  Identities=23%  Similarity=0.377  Sum_probs=283.8

Q ss_pred             HHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011743           29 MGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSL  108 (478)
Q Consensus        29 ~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~  108 (478)
                      ++||++...+..|+.+.+|++..++..+...+....++.++++|+++|+++||+|++.++.++..+|..++.+++..+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999888875421111


Q ss_pred             CCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 011743          109 HPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY  188 (478)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~  188 (478)
                      .           .......++++.+.++|.|+++|+..++.+|++++++   ++.|.+.|+++|+++|+|+.+++.+.++
T Consensus        81 ~-----------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~  146 (654)
T TIGR00926        81 H-----------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPI  146 (654)
T ss_pred             c-----------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0           1134457788999999999999999999999998654   2338899999999999999999999999


Q ss_pred             hhcc-------chhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhh
Q 011743          189 VFID-------QGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKI  261 (478)
Q Consensus       189 l~~~-------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (478)
                      +.+.       .+|+.+|.++++.++++++++...++.+++.+|++++..+..+++..+.+++......           
T Consensus       147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~-----------  215 (654)
T TIGR00926       147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE-----------  215 (654)
T ss_pred             HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc-----------
Confidence            9743       3699999999999999999998888888777777777777778877777654321110           


Q ss_pred             hccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccC
Q 011743          262 ERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMD  341 (478)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (478)
                                 ....+|+|++..+            ..+++++++|++++++.+++..+++|..+.|..+.+..|+.+++
T Consensus       216 -----------~~~~~~ld~a~~~------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~  272 (654)
T TIGR00926       216 -----------HWPLHWLDYAKDK------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD  272 (654)
T ss_pred             -----------ccchhHHHHhccc------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence                       0013466654332            12356789999999999999999999999999999999998888


Q ss_pred             CCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011743          342 PRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAF  418 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~  418 (478)
                      .+++++.+|+++++.+|++.++++.|+.++.++|+.+|+..   .+++.+|+.+|++++++++++.+.+|..+....
T Consensus       273 ~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~  346 (654)
T TIGR00926       273 GDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTL  346 (654)
T ss_pred             CccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88888889999999999999999999999888888777532   368999999999999999999999988766544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.95  E-value=3.2e-27  Score=239.52  Aligned_cols=365  Identities=28%  Similarity=0.459  Sum_probs=242.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhh
Q 011743           82 FATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGA  161 (478)
Q Consensus        82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~  161 (478)
                      +|++++|.++..+|.+++.++...+..          +.+.+...+++++.++++|.|+++|++.++++||+++++   +
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~   67 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---D   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---T
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---h
Confidence            489999999999999998887643222          113356789999999999999999999999999999874   2


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeec-CCCCCchhH-HHHHHHH
Q 011743          162 KALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ-QPGESPLVR-VAQVIVV  239 (478)
Q Consensus       162 ~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~  239 (478)
                      .+|.++|+++|+++|+|+.+++.+.+++.+++||.+.|.++.+.++++++.++..++.+++. ++.+++..+ ...+...
T Consensus        68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~  147 (372)
T PF00854_consen   68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVA  147 (372)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHH
Confidence            33889999999999999999999999999999999999999999999999999999988887 667777777 4444455


Q ss_pred             HHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCccc-ccchhhHHHHHHHHHHHHHHH
Q 011743          240 AIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRV-CTVTQVEEVKILARMMPILAS  318 (478)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~  318 (478)
                      ..+++....+....+.............     .+.....+......+..   ..|.. .+++++++.+.+.+.+..+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~~~~~~~~~~  219 (372)
T PF00854_consen  148 AFKKRKLAVPKGSSWLDWALFQYSERSI-----FGIIVFIRAAVIFFPEI---FFWALFCQVQRVEELKALIRFLPIFLF  219 (372)
T ss_dssp             HHHHHCCCH-HHHHHHHHHHHHHCCCCC-----CCCCCHHHHHHHHCCCH---HHHTTTSSTTTHHHCCHHHCHHHCCCH
T ss_pred             HHHHhhcccccchHHHHHhhhhhhhhhh-----hhhhhhccchhhhhhhh---hhcccCCccceeeeeeeeeeccccCeE
Confidence            5566655554322222221111100000     00000000000000000   00100 223455677777777777777


Q ss_pred             HHHHHHhHhhcchhhhhhhcccCCCCCC-cccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHH
Q 011743          319 TIIMNTCLAQLQTLSVTQGAYMDPRLGS-IKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGL  397 (478)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~  397 (478)
                      ...+..++.+.......+...++....+ +.+|+++++++|++.++++.|+.+++++|+.|+..    ..++..++.+|+
T Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~----~~~~~~k~~~G~  295 (372)
T PF00854_consen  220 WIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI----QPSPPQKFGIGM  295 (372)
T ss_dssp             HHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-
T ss_pred             EEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc----cchhhhhhhHHH
Confidence            8888888888888888888888888887 89999999999999999999999999999988432    369999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHh
Q 011743          398 VLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHC  473 (478)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~  473 (478)
                      +++.+++.....+|..+.+..++.+  ..+.+|+++.+++.+++|.+.+|...+.+++.+|+++.+..+|++....
T Consensus       296 ~~~~~~~~~~~~v~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~  369 (372)
T PF00854_consen  296 VFAILAMFVAAIVEIRRLCYAQPCG--KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALS  369 (372)
T ss_dssp             HHHHHHHHTTTHHHH---HH----T--T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcccccC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHh
Confidence            9999999999999876555444433  2455888899999999999999999996666666555555555555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=8e-24  Score=222.74  Aligned_cols=386  Identities=11%  Similarity=0.005  Sum_probs=236.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      ..+..+++..++...-.-.+..-+| .+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+++++
T Consensus         6 ~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence            3444455555555554444444444 4467899999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCC-CCChhhhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD-ENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~-~~~~~~~~~r~~~~~~~~~  173 (478)
                      +.+++..+.                   +.+.++++|+++|+|.+...|...+.+.+.++ +++      |+++++++..
T Consensus        84 ~~~~~~~a~-------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~~  138 (495)
T PRK14995         84 ASLAAAFSP-------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWAA  138 (495)
T ss_pred             HHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHH
Confidence            999988765                   78889999999999999999988888877764 444      8999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHH--------HHHHHhcC
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVI--------VVAIKNRK  245 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  245 (478)
                      ..++|..+||.+++++.+..|||+.|++...+.++.+++.....++.++++  .++.+......        ....++..
T Consensus       139 ~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~  216 (495)
T PRK14995        139 VGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTAL  216 (495)
T ss_pred             HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999988777666655544444322211  11111111110        11111100


Q ss_pred             CCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011743          246 LSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTC  325 (478)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~  325 (478)
                       +...+.......-.-...    ..   -.+.+.+        .+.+.|..+  .+-.++ +.+................
T Consensus       217 -~~~~~~~~~~~~~~~~~~----~l---~~f~~~e--------~~~~~p~~~--~~lf~~-~~~~~~~~~~~~~~~~~~~  277 (495)
T PRK14995        217 -KGFLSLWVTSLTLLTGAL----LL---GLFIRTQ--------LAASRPMID--MRLFTH-RIILSGVVMAMTAMITLVG  277 (495)
T ss_pred             -ccCCchHHHHHHHHHHHH----HH---HHHHHHH--------hcCCCCCcC--HHHhCC-cccHHHHHHHHHHHHHHHH
Confidence             000000000000000000    00   0000000        000111100  000111 1111111111111111111


Q ss_pred             HhhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHH
Q 011743          326 LAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMT  405 (478)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~  405 (478)
                      ...+.+.+.+...+.+      ....+.......+...+..++.+++.++.           ++++.+..|.++.++++.
T Consensus       278 ~~~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-----------g~~~~~~~g~~~~~~~~~  340 (495)
T PRK14995        278 FELLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRL-----------GLRLVATGGMALSALSFY  340 (495)
T ss_pred             HHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CchHHHHHHHHHHHHHHH
Confidence            1112233333333333      12234444445566677777777755443           233456778777777766


Q ss_pred             HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          406 IAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      .......            ..+.+......++.|+|.++..++....+.+.+|++++|.+++++++.+++|+
T Consensus       341 ~l~~~~~------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~  400 (495)
T PRK14995        341 GLAMTDF------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA  400 (495)
T ss_pred             HHHHhcC------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence            5544321            13445556678889999999999999999999999999999999999998875

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=1.9e-23  Score=214.09  Aligned_cols=175  Identities=14%  Similarity=0.107  Sum_probs=156.5

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHH
Q 011743           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (478)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~   90 (478)
                      ++.+|  ++++...++.+.+++.+.++++.|+++++|.+..+.|.+.++..+...+..+++|+++|| +|||+++..+.+
T Consensus         8 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~   84 (400)
T PRK11646          8 RNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGML   84 (400)
T ss_pred             ccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHH
Confidence            44566  778899999999999999999999999999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      +.+++.+++...+                   +.+.+++.|+++|++.+...|+..+++.|.+|+++      |++++++
T Consensus        85 ~~~~~~~~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~  139 (400)
T PRK11646         85 MRAAGFATMAIAH-------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSL  139 (400)
T ss_pred             HHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHH
Confidence            9999988877653                   67788899999999999999999999999999877      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .+...++|..+||.+++++. ..+|++.|++.++..++..+...
T Consensus       140 ~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~  182 (400)
T PRK11646        140 LMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNA  182 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 68999999988777665544433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=1.8e-23  Score=208.82  Aligned_cols=346  Identities=17%  Similarity=0.180  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 011743           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT  100 (478)
Q Consensus        21 ~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~  100 (478)
                      ++..++..++...+.+.++.++.+++|.+..+.+++.+++.+...++.++.|+++|| +||||++.++.++.+++..+..
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence            455666777777677777768899999999999999999999999999999999999 8999999999999999955555


Q ss_pred             HHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 011743          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM  180 (478)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  180 (478)
                      ++.                   +.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.....++|..
T Consensus        81 ~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~  135 (352)
T PF07690_consen   81 FAS-------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSI  135 (352)
T ss_dssp             HHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHH
T ss_pred             hhh-------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhh
Confidence            443                   45589999999999999999999999999999988      99999999999999999


Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhh
Q 011743          181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINK  260 (478)
Q Consensus       181 ~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (478)
                      ++|.+++++.+..+|++.|++.++..++..++.....++.++++++.++                    .+++   +   
T Consensus       136 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~--------------------~~~~---~---  189 (352)
T PF07690_consen  136 LGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP--------------------KESE---S---  189 (352)
T ss_dssp             HHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS--------------------TTTT-------
T ss_pred             cccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccc--------------------cccc---c---
Confidence            9999999999888999999999888877766433332211111110000                    0000   0   


Q ss_pred             hhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHH-HHHHHHHHHHhHhhcchhhhhhhcc
Q 011743          261 IERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMP-ILASTIIMNTCLAQLQTLSVTQGAY  339 (478)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~  339 (478)
                                  .+..++.+             .+     +.+.+.+.++..+. .++....+.. ...+.+.+..+..+
T Consensus       190 ------------~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~  238 (352)
T PF07690_consen  190 ------------KKPKPLKP-------------GF-----KSLFKNPVLWILLIAFFLFFFVFSG-FSFFLPLYLQEVLG  238 (352)
T ss_dssp             -------------HHHCCCH--------------C-----THHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHH
T ss_pred             ------------cccccccc-------------cc-----ccccccchhhhhhhhhhHHHHHHHH-hhcccchhhhhccC
Confidence                        00000000             01     01112222221111 1111112222 22222222222222


Q ss_pred             cCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011743          340 MDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFN  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~  419 (478)
                      .+ .    ....+.+..+..+..++..++.+++.+++           ++.++..+......++.+........      
T Consensus       239 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~------  296 (352)
T PF07690_consen  239 FS-G----PSQAGLLFSIFGIVGIIGSLLAGRLSDRF-----------GRRRRLLIAILLLILGALGLLLLPFS------  296 (352)
T ss_dssp             CC-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHHCCSHHH------
T ss_pred             CC-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CcHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            22 0    01122334444555555566666655443           22233444433333333333332111      


Q ss_pred             CCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          420 QSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       420 ~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                            .+..+.....++.|++.+...|...+++.+.+|++++|+++|+.++..++|+
T Consensus       297 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  348 (352)
T PF07690_consen  297 ------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG  348 (352)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence                  2456666678889999999999999999999999999999999999988774

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=1.7e-22  Score=202.64  Aligned_cols=346  Identities=11%  Similarity=0.054  Sum_probs=226.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~   99 (478)
                      ++...++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++|| +||||++..+.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHH
Confidence            556667777777667777777765 589999999999999999999999999999999 899999999999888887776


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  179 (478)
                      ......+              ..+.+.++++|++.|++.+...|+..+++.|.+|+++      |++.+++.....++|.
T Consensus        82 ~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~  141 (365)
T TIGR00900        82 PFVALLG--------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFY  141 (365)
T ss_pred             HHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHH
Confidence            6553100              1267888999999999999999999999999999876      8999999999999999


Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 011743          180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEIN  259 (478)
Q Consensus       180 ~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (478)
                      .++|.+++++.+..+|++.|++.++..+++.+..+..+.+.+++++ +++..                    ++ ..+ +
T Consensus       142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------~~-~~~-~  198 (365)
T TIGR00900       142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQALS--------------------NA-VLR-D  198 (365)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccccc--------------------hh-HHH-H
Confidence            9999999999888899999998877666555444433221111000 00000                    00 000 0


Q ss_pred             hhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHH-HHHHHHHHHhHhhcchhhhhhhc
Q 011743          260 KIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPI-LASTIIMNTCLAQLQTLSVTQGA  338 (478)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  338 (478)
                                        ..+             .++     ...+.+.+...+.. +.....+........+.+..+..
T Consensus       199 ------------------~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T TIGR00900       199 ------------------TRE-------------GIK-----FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYL  242 (365)
T ss_pred             ------------------HHh-------------HHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence                              000             000     00001111111111 11111111111122233322212


Q ss_pred             ccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011743          339 YMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAF  418 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~  418 (478)
                      +.+      ....+.+.....+..++..++..++    .+|.       ++.+.+..+.++.++++....+..       
T Consensus       243 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------  298 (365)
T TIGR00900       243 GRG------STHYGWVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP-------  298 (365)
T ss_pred             CCc------hHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc-------
Confidence            222      1122333444455555555555543    3332       333445566666666665555431       


Q ss_pred             cCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          419 NQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       419 ~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                             .+.+......++.+++.+...|...++..+..|+++||+++|+.+...++|+
T Consensus       299 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (365)
T TIGR00900       299 -------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAW  350 (365)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence                   1255666778899999999999999999999999999999999999887764

>PRK12382 putative transporter; Provisional

Probab=99.91  E-value=2.1e-22  Score=205.54  Aligned_cols=179  Identities=12%  Similarity=-0.031  Sum_probs=148.2

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHH
Q 011743            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (478)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   88 (478)
                      .++...+.++.+.+..++...+.....+.+|.|+.+++|.|..+.|++.+.+.+...++.++.|+++|| +||||.+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~   87 (392)
T PRK12382          9 TRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQG   87 (392)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHH
Confidence            334456778888888888888888888999999999999999999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHH
Q 011743           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (478)
Q Consensus        89 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~  168 (478)
                      .+...++.+........+..           ...+.+.++++|+++|++.+...+...+++.|.+|+++      |++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~  150 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVS-----------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVM  150 (392)
T ss_pred             HHHHHHHHHHHHhhhccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhh
Confidence            88877765443322110000           01267888999999999999998988899999999887      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 011743          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA  205 (478)
Q Consensus       169 ~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~  205 (478)
                      ++...+.++|..++|.+++++.+..||++.+.+..+.
T Consensus       151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            9999999999999999999998888999877655443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.91  E-value=2.6e-22  Score=205.19  Aligned_cols=186  Identities=13%  Similarity=-0.019  Sum_probs=154.1

Q ss_pred             CCcccccccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchh
Q 011743            3 DKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF   82 (478)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~   82 (478)
                      +.|++...|. .|.+..+++..++..++.....+.++.|+++++|.+..+.+++.+++.+...++.++.|+++|| +|||
T Consensus         4 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r   81 (399)
T PRK05122          4 AEPALSGLRL-TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPK   81 (399)
T ss_pred             cchhhccCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCc
Confidence            3444444443 3557778888899999988889999999999999999999999999999999999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 011743           83 ATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK  162 (478)
Q Consensus        83 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~  162 (478)
                      |++..+.++.+++.+.+..+.....     +.      ..+...+++.|+++|++.+...++..+++.|++|+++     
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-----  145 (399)
T PRK05122         82 KAVVFGLCGCALSGLLYLLAGLLAA-----WP------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH-----  145 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhc-----cc------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh-----
Confidence            9999999988887766554321000     00      1146678999999999999999999999999999887     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 011743          163 ALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATL  207 (478)
Q Consensus       163 ~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~  207 (478)
                       |++++++.....++|..++|.+++++.+..||+..|++..+..+
T Consensus       146 -r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        146 -TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             -hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence             89999998888899999999999999888999998887665543

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=3.1e-23  Score=212.10  Aligned_cols=177  Identities=13%  Similarity=0.097  Sum_probs=156.1

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHH
Q 011743           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (478)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~   90 (478)
                      .+.+|+.+.+++..++...+++.+.++++.|+++++|++..++|++.+.+.+...+..++.|+++|| +|||+++.++.+
T Consensus         3 ~~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~   81 (395)
T PRK10054          3 LSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAIT   81 (395)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      +..++.+++...+                   +.+.+++.+.+.+.+.+...+...+...|.+|+++      |++++++
T Consensus        82 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~  136 (395)
T PRK10054         82 AFASGFIAIPLVN-------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSL  136 (395)
T ss_pred             HHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHH
Confidence            8888888777664                   56667777888888878888888999999998777      8999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .+...++|..++|.+++++.+ .+|+..|++.+++.+++++...
T Consensus       137 ~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        137 NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875 7999999988877766654443

>PRK10504 putative transporter; Provisional

Probab=99.91  E-value=1.4e-22  Score=212.00  Aligned_cols=179  Identities=10%  Similarity=0.036  Sum_probs=154.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      ..|.+|.+.+..++..+..+.+.+.+|.|.+ ++|.++.+.+++.+.+.++..++.++.|+++|| +||||++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~   85 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLF   85 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHH
Confidence            3556788888888888888888888887765 699999999999999999999999999999999 89999999999888


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      +++.+++..+.                   +.+.++++|+++|++.+...|...+.+.|.+|+++      |++++++.+
T Consensus        86 ~~~~~~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  140 (471)
T PRK10504         86 TLGSLFCALSG-------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVT  140 (471)
T ss_pred             HHHHHHHHHhC-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            88887766553                   67788899999999999999999999999998766      889999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ...++|..++|.+++.+.+..|||+.|++......++.+......+
T Consensus       141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999998899999999988776666655544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=9.6e-23  Score=213.56  Aligned_cols=386  Identities=10%  Similarity=0.025  Sum_probs=235.7

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      ...+++..++..+....+...+ +++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+.++.++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAI-PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence            3445555555555554444444 45567899999999999999999999999999999999 899999999999999998


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      +++..+.                   +...++++|+++|++.+...+...+++.|.+|+++      |+++++++....+
T Consensus        82 ~~~~~~~-------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~  136 (485)
T TIGR00711        82 LLCGVAP-------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVL  136 (485)
T ss_pred             HHHhCcC-------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence            8887654                   67889999999999999999999999999999777      8999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHH--------HHHHhcCCCC
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIV--------VAIKNRKLSL  248 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  248 (478)
                      +|..++|.+++++.++.+||+.|++.+...++..+...+..++.++.  +.++.+.....+.        ....+.....
T Consensus       137 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~  214 (485)
T TIGR00711       137 VAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERG  214 (485)
T ss_pred             HHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99999999999999989999999998777665555444433321111  1111111111110        0011111000


Q ss_pred             CCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 011743          249 PDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQ  328 (478)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~  328 (478)
                      ..++.+..........    ..     ..+..+. .+     .+.|..+  .+...+++.....+..++....++.. ..
T Consensus       215 ~~~~~~~~~~~~~~~~----~~-----~~~~~~~-~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  276 (485)
T TIGR00711       215 WFDSNEILILSITGLV----AI-----IAFVVWE-LT-----DDNPLVD--LRLFKYRNFTIGCVYMSLLGLGLYGS-FY  276 (485)
T ss_pred             CCCchHHHHHHHHHHH----HH-----HHHHHHH-Hc-----CCCCccC--HHHHcCCChHHHHHHHHHHHHHHHHH-HH
Confidence            0000000000000000    00     0000000 00     0001000  00011111111111111111111111 11


Q ss_pred             cchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 011743          329 LQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAG  408 (478)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~  408 (478)
                      +.+.+.+...+.+      ....+.+.....+..++..++.+++.++.           ++++.+.+|.++.+++..+..
T Consensus       277 ~~p~~~~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       277 LLPLYLQQVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKI-----------DPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CcHHHHHHHHHHHHHHHHHHh
Confidence            2222322222222      11233444555667777777777654433           334556778777777766555


Q ss_pred             HHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          409 FVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      +..      .     ...+.+.+....++.|++.++..++....+.+..|++++|.++|+.++.+.+|+
T Consensus       340 ~~~------~-----~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~  397 (485)
T TIGR00711       340 FTF------T-----PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGG  397 (485)
T ss_pred             ccC------C-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHH
Confidence            210      0     013455666678899999999998888888899999999999999999988774

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.91  E-value=4.5e-22  Score=203.04  Aligned_cols=174  Identities=15%  Similarity=0.052  Sum_probs=147.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      +..++.+.+..++.....+...+.+| .+.+++|.++.+.+++.+.+.+...++.++.|+++|| +||||++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHH
Confidence            44466666666665555453333444 5678999999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.+.+..++                   +.+.+++.|+++|++.+...|...+++.|++|+++      |++++++...
T Consensus        86 ~~~~~~~~~~-------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~  140 (390)
T PRK03545         86 ASHVLSALAW-------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLAT  140 (390)
T ss_pred             HHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHH
Confidence            9988887764                   78889999999999999999999999999999887      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      +.++|..++|.+++.+.+..|||+.|++.++..++..+...
T Consensus       141 ~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~  181 (390)
T PRK03545        141 GTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI  181 (390)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888999999998877665544433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.91  E-value=7e-22  Score=202.44  Aligned_cols=349  Identities=13%  Similarity=0.041  Sum_probs=223.8

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHH
Q 011743            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (478)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   88 (478)
                      ..+.++..+...+...+++.+..+......+ .+.+++|.++.+.+++.+.+.++..++.++.|+++|| +||||++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~   86 (406)
T PRK11551          9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVS   86 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHH
Confidence            3343444455555666666666555544444 5567899999999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHH
Q 011743           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (478)
Q Consensus        89 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~  168 (478)
                      .++..++.+++..+.                   +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++
T Consensus        87 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~  141 (406)
T PRK11551         87 VALFGLFSLATAQAW-------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAV  141 (406)
T ss_pred             HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            998888877776654                   67888899999999999999999999999999877      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCC
Q 011743          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSL  248 (478)
Q Consensus       169 ~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (478)
                      ++.+...++|..+++.+++.+.+..+|+..|++.+++.++..+......++.++.+++++                   .
T Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------~  202 (406)
T PRK11551        142 SLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG-------------------A  202 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC-------------------c
Confidence            999999999999999999888888899999998776555444433332222111000000                   0


Q ss_pred             CCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 011743          249 PDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQ  328 (478)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~  328 (478)
                      .+.++..                      +...  .                ++.+.++........+.....++.....
T Consensus       203 ~~~~~~~----------------------~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (406)
T PRK11551        203 GKQRAPV----------------------LRAL--F----------------GEGRATATLLLWISYFFTLIVLYFLLNW  242 (406)
T ss_pred             chhhhhh----------------------HHHH--h----------------hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000                      0000  0                0000111111111111212222222222


Q ss_pred             cchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 011743          329 LQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAG  408 (478)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~  408 (478)
                      . +.+. +..+.+.      ...+.+.....+..++...+.+++.+++.+|           +.+..+++..++++....
T Consensus       243 ~-p~~~-~~~g~s~------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        243 L-PSLL-VGQGLSR------SQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALA  303 (406)
T ss_pred             H-HHHH-HhCCCCh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHH
Confidence            1 2221 1122221      1234444555566667777777766654433           223444444444444333


Q ss_pred             HHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          409 FVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      ..               .+.+.+....++.+++.....+...+++.+..|+++||+++|+.+....+|+
T Consensus       304 ~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  357 (406)
T PRK11551        304 AA---------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS  357 (406)
T ss_pred             hc---------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence            32               2344455566777887777888899999999999999999999998887764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=1.6e-21  Score=198.70  Aligned_cols=174  Identities=14%  Similarity=0.169  Sum_probs=148.9

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHH
Q 011743           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (478)
Q Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   89 (478)
                      .+.+++......+..+...+..+.+.+..+ .+.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            345567777777888888877776555554 5678999999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ++.+++.+++..+.                   +.+.+++.|++.|++.+...+...+++.|++|+++      |+++++
T Consensus        85 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~  139 (405)
T TIGR00891        85 VLFSAGTLACGFAP-------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASG  139 (405)
T ss_pred             HHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHH
Confidence            99999888877654                   67888999999999999999999999999999887      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccch--hHHHHHHHHHHHHHHH
Q 011743          170 FYLFATTLAAMIGVTAIVYVFIDQG--WWLGFLISSVATLIGL  210 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~~~~--~~~~f~i~~~~~~~~~  210 (478)
                      +.....++|..+++.+++.+.+..+  |++.|++.++..++..
T Consensus       140 ~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       140 LLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999998877665  9999987665544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.90  E-value=8.3e-22  Score=199.21  Aligned_cols=154  Identities=15%  Similarity=0.126  Sum_probs=137.0

Q ss_pred             HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 011743           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (478)
Q Consensus        37 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  116 (478)
                      ...+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++..++..+.             
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~-------------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG-------------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence            44455788999999999999999999999999999999999 8999999999999999888887764             


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 011743          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWW  196 (478)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~  196 (478)
                            +.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.....++|..++|.+++++.+..+|+
T Consensus        81 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  148 (399)
T TIGR00893        81 ------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ  148 (399)
T ss_pred             ------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCch
Confidence                  77889999999999999999999999999999777      899999999999999999999999988889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 011743          197 LGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       197 ~~f~i~~~~~~~~~~~~~~~  216 (478)
                      +.|++.++..++..+...+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       149 WAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhe
Confidence            99998877766555544443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.89  E-value=4.7e-21  Score=194.25  Aligned_cols=344  Identities=13%  Similarity=0.042  Sum_probs=225.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      +++.++.+....++...+.....+.+| ++.+++|.+..+.+++.+.+.++..++.++.|+++|| +||||.+..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence            345555566666666666665666655 4567899999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++.+++..+.                   +.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+
T Consensus        81 ~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  135 (385)
T TIGR00710        81 ALSSLGLALSN-------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILM  135 (385)
T ss_pred             HHHHHHHHHHc-------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHH
Confidence            99888877664                   67788899999999999999999999999999877      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNP  252 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (478)
                      ...++|..++|.+++++.+..+|+..|++.++..++..+..+...++.++.+. +++..+                    
T Consensus       136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------------  194 (385)
T TIGR00710       136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEA-RIQIST--------------------  194 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-cCCHHH--------------------
Confidence            99999999999999999888899999998877766555554443322111000 000000                    


Q ss_pred             hhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchh
Q 011743          253 EELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTL  332 (478)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  332 (478)
                        ..+                   ++.+                     ..++ ++.+............+..+....+.
T Consensus       195 --~~~-------------------~~~~---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (385)
T TIGR00710       195 --YFE-------------------TFLL---------------------LLKS-KMFWGYALIYGASFGGFFAFFSGAPF  231 (385)
T ss_pred             --HHH-------------------HHHH---------------------HHcC-chhHHHHHHHHHHHHHHHHHHHcChH
Confidence              000                   0000                     0001 11111111111111111111112222


Q ss_pred             hhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011743          333 SVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEV  412 (478)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~  412 (478)
                      +..+..+.+.      ...+.+.....+..++..++.+++.+++           ++++.+..+.++.+++.........
T Consensus       232 ~~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~g~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  294 (385)
T TIGR00710       232 VYIDIMGVSP------SVFGLLFALNIIAMIFGGFLNGRFIKKW-----------GAKSLLRMGLILFAVSAVLLEITAI  294 (385)
T ss_pred             HHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222221      1223344445566666777666655443           3445566676666666655554321


Q ss_pred             HHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhc
Q 011743          413 KRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHL  475 (478)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~l  475 (478)
                      .     .     ..+...+....++.+++.+...+.......+..| +.+|+++++.+.....
T Consensus       295 ~-----~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~  346 (385)
T TIGR00710       295 L-----G-----LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLV  346 (385)
T ss_pred             h-----c-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHH
Confidence            1     0     0123344555677889999999999999988887 5799999988876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.89  E-value=5.9e-21  Score=196.33  Aligned_cols=177  Identities=13%  Similarity=0.058  Sum_probs=146.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      .++..+.+.+..+++..... ...+....+++++|++..+.+++.+++.++..++.++.|+++|| +||||++..++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRI-NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhh-hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHH
Confidence            45555555554444444333 33344558899999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++.+++.++.                   +.+.++++|++.|++.+...|....++.|++|+++      |++.++++.
T Consensus        84 ~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~  138 (412)
T TIGR02332        84 GIASTATMFAT-------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFM  138 (412)
T ss_pred             HHHHHHHHHhc-------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            99998888764                   67889999999999999999999999999999877      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          173 FATTLAAMIGVTAIVYVFI------DQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~------~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ...++|..+++.+++++.+      ..|||+.|++.++..++..++.++.
T Consensus       139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       139 IAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999988763      3699999999877765554444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=5.6e-21  Score=195.37  Aligned_cols=175  Identities=13%  Similarity=0.056  Sum_probs=150.6

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHH
Q 011743           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (478)
Q Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   89 (478)
                      .|..|+.+..+.+..++.....|...+.++.+ .+++|.++.+.++..+.+.+...++.++.|+++|| +||||++..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~   92 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFA   92 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHH
Confidence            34456666666666666666666666666654 56899999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ++.+++.+++..+.                   +.+.+++.|+++|++.+...|...+++.|++|+++      |+++.+
T Consensus        93 ~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~  147 (394)
T PRK10213         93 VLLTLSCLLVSFAN-------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALS  147 (394)
T ss_pred             HHHHHHHHHHHHHC-------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHH
Confidence            99999888877654                   78899999999999999999999999999999877      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011743          170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~  211 (478)
                      +.....++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus       148 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        148 VIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999889999999988766554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.89  E-value=9.2e-21  Score=188.59  Aligned_cols=312  Identities=18%  Similarity=0.141  Sum_probs=236.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (478)
Q Consensus        18 ~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~   97 (478)
                      +.+....++..++.+...+.++.|.+ ++|.+..+.+++.+...+...++.++.|+++|| +||||.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHH
Confidence            34566777888888877788877764 679999999999999999999999999999999 8999999999999999988


Q ss_pred             HHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHH
Q 011743           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (478)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (478)
                      .+....                   +.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...++
T Consensus        80 ~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  134 (352)
T cd06174          80 LLAFAS-------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL  134 (352)
T ss_pred             HHHHhc-------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence            887664                   67888999999999999999999999999999887      99999999999999


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhh
Q 011743          178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYE  257 (478)
Q Consensus       178 g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (478)
                      |..++|.+++.+.+..+|++.|++.++..++..+...+..                                        
T Consensus       135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  174 (352)
T cd06174         135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL----------------------------------------  174 (352)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence            9999999999998888899999988877666655544321                                        


Q ss_pred             hhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhh
Q 011743          258 INKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQG  337 (478)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  337 (478)
                                                                       |+.................+....+.+..+.
T Consensus       175 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (352)
T cd06174         175 -------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV  205 (352)
T ss_pred             -------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence                                                             0000011111111111111122222222221


Q ss_pred             cccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011743          338 AYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQ-RVGVGLVLSVISMTIAGFVEVKRRN  416 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~-~i~~G~~~~~~~~~~~~~~~~~~~~  416 (478)
                      .+.+      ....+.+.....+..++..++..++.+|..+|           + .+..+.++..+++......      
T Consensus       206 ~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~------  262 (352)
T cd06174         206 LGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLALA------  262 (352)
T ss_pred             cCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHh------
Confidence            1222      22234555666777777777777765554333           3 5777888887777766665      


Q ss_pred             hccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          417 AFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       417 ~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                               .+.+......++.+++.+...+...+++.+..|+++|++.+|+.+...++|+
T Consensus       263 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (352)
T cd06174         263 ---------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGG  314 (352)
T ss_pred             ---------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence                     2456677888999999999999999999999999999999999999888764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00895 2A0115 benzoate transport

Probab=99.89  E-value=8.4e-21  Score=192.72  Aligned_cols=173  Identities=16%  Similarity=0.120  Sum_probs=141.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +.....++..+....... ...+..+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        17 RAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHH
Confidence            333333344444444433 34445556678899999999999999999999999999999999 8999999999998888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++....                   +.+.+++.+++.|++.+...+...+++.|.+|+++      |++++++....
T Consensus        95 ~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~  149 (398)
T TIGR00895        95 FTLLCALAT-------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCG  149 (398)
T ss_pred             HHHHHHHcc-------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhH
Confidence            887776553                   67778899999999999999999999999999877      89999999999


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .++|..++|.+++++.+..+|+..|++.++..++..++..
T Consensus       150 ~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       150 YPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             HHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence            9999999999999998888999999988655544444333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=7e-21  Score=195.24  Aligned_cols=176  Identities=15%  Similarity=0.123  Sum_probs=141.9

Q ss_pred             CcchhHHHHHHHHHHH---HHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHH
Q 011743           13 GFRACTFVFVLSALEN---MGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~---~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   89 (478)
                      +.+..+..+...+.+.   ++...+.+.++. +.+++|.+..+.++..+.+.++..++.++.|.++|| +||||.+.++.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHH
Confidence            3444444444444443   344444455554 557899999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      .+..++.++...+.                   +.+.+++.|+++|++.+...+...+.+.|.+|+++      |.+..+
T Consensus        86 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~  140 (406)
T PRK15402         86 AFFILTCLAILLAQ-------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITA  140 (406)
T ss_pred             HHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHH
Confidence            99888888776654                   67778899999999999888888999999998777      788888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +......+|..++|.+++++.+..+|++.|++.++..++..+....
T Consensus       141 ~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        141 LMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999988889999999887776665554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.89  E-value=1.1e-20  Score=193.13  Aligned_cols=167  Identities=9%  Similarity=0.036  Sum_probs=139.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+.++...++..++...+...++.. .+++|.+..+.+++.+.+.+...++.|++|+++|| +||||++.++.+++++
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHH
Confidence            456677888888888766555555544 57899999999999999999999999999999999 8999999999999998


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++..+.                   +.   ++.|+++|++.+...|+..+++.|.+|+++      |+++.++....
T Consensus        81 ~~~~~~~~~-------------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~  132 (393)
T PRK11195         81 GCLLMLFGI-------------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGS  132 (393)
T ss_pred             HHHHHHHHH-------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence            887765543                   32   678999999999999999999999999887      99999999999


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~  212 (478)
                      .++|..+||.++|++.+. .|+..+++.+...+++.+.
T Consensus       133 ~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~  169 (393)
T PRK11195        133 TIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALF  169 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999874 5777777666554444333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.89  E-value=1.2e-20  Score=204.33  Aligned_cols=156  Identities=10%  Similarity=0.078  Sum_probs=132.3

Q ss_pred             HHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011743           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (478)
Q Consensus        35 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  114 (478)
                      ...+.+++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++++++++.+++.+++.++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            4445567778899999999999999999999999999999999 8999999999999999888887764           


Q ss_pred             CCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 011743          115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--  192 (478)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~--  192 (478)
                              +.+.++++|++.|+|.|+..|...++++|.+|++.      |++.+++......+|..+++.++..+...  
T Consensus       254 --------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       254 --------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                    67889999999999999999999999999999877      89999999988999999998877655432  


Q ss_pred             -----------chhHHHHHHHHHHHHHHHHHHHhc
Q 011743          193 -----------QGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       193 -----------~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                                 .+||+.|++.++..++.++..++.
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l  354 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM  354 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence                       368999888777666555444443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.88  E-value=8.3e-21  Score=192.07  Aligned_cols=161  Identities=11%  Similarity=0.041  Sum_probs=126.1

Q ss_pred             HHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011743           27 ENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSK  106 (478)
Q Consensus        27 ~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~  106 (478)
                      ++.......+.+ +.+++++|+++.+.|++.+.+.++..++.++.|+++|| +|||+++..+......+.. .....   
T Consensus         3 ~~~~~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~---   76 (368)
T TIGR00903         3 SQAIWVTFSPVL-SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDP---   76 (368)
T ss_pred             hhHHHHHHHhhH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHh---
Confidence            344444334444 45677999999999999999999999999999999999 8999887655544444432 22221   


Q ss_pred             cCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 011743          107 SLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI  186 (478)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  186 (478)
                                     .+...+++.|+++|+|.+.. ++..+.++|++|+++      |++++++...+.++|..+++.++
T Consensus        77 ---------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~  134 (368)
T TIGR00903        77 ---------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAG  134 (368)
T ss_pred             ---------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                           26888999999999999864 455555689999877      99999999999999999999999


Q ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          187 VYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       187 ~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +++.+..|||+.|++.++..++..++++.
T Consensus       135 ~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       135 LKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            99998899999999877766555544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.88  E-value=1.9e-20  Score=189.29  Aligned_cols=169  Identities=14%  Similarity=0.057  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHH-HHHHHHHHHHHH
Q 011743           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV-FGTLEVLSLVML   99 (478)
Q Consensus        21 ~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~-~~~~~~i~~~~~   99 (478)
                      ++..++..++.....+.++.|+++++|.+..+.|++.+++.+...+..++.|.++|| +||||.++. +..+..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence            455777788888888999999999999999999999999999999999999999999 899887665 445555565665


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhh--HHHHHHHHHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS--YFNFYLFATTL  177 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~--~~~~~~~~~~~  177 (478)
                      ..++                   +.+.+++.|++++.+.+...|...++..|..|+++      |.+  ..+..+...++
T Consensus        82 ~~~~-------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  136 (375)
T TIGR00899        82 AWNR-------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISL  136 (375)
T ss_pred             Hhcc-------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhH
Confidence            5543                   66777788888888878788888888888776544      443  35777778899


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       178 g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      |..++|.+++++.+..+||+.|++.++..++..+..++
T Consensus       137 g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       137 AWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988899999999988876666555444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2.1e-20  Score=185.87  Aligned_cols=183  Identities=17%  Similarity=0.090  Sum_probs=168.8

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHH
Q 011743            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (478)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   88 (478)
                      ..+..+..++.+.+..|.....-|.....+|. +.+++|.+..++|...+.|..+..++.|+...++|| +.||++++..
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~   84 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGL   84 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHH
Confidence            44566788999999999999998888877765 567899999999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHH
Q 011743           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (478)
Q Consensus        89 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~  168 (478)
                      +.+++++.++..++.                   +++.++++|++.|+..|.+.+...+..++..|+++      |+++.
T Consensus        85 l~lFi~~n~l~alAp-------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Ai  139 (394)
T COG2814          85 LALFIVSNLLSALAP-------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRAL  139 (394)
T ss_pred             HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHH
Confidence            999999999999986                   89999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       169 ~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      +....+..++..+|..++.++.+.+|||..|++.+++.+++.+..+...|
T Consensus       140 aiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         140 ALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999998888877777666544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.88  E-value=7.4e-21  Score=194.70  Aligned_cols=175  Identities=15%  Similarity=0.027  Sum_probs=146.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhh-----HhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAG-----ASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   88 (478)
                      .|....+.+..++...++....++++.|.+ ++|.+..+     ++++.+++.+...++.++.|+++|| +|||+.+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~   90 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRS   90 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHH
Confidence            455666778888888888888899998875 58888654     4888999999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHH
Q 011743           89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF  168 (478)
Q Consensus        89 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~  168 (478)
                      .++.+++.+++....                   +.+.+++.|++.|++.+ ..+...+++.|.+|+++      |+++.
T Consensus        91 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~  144 (408)
T PRK09874         91 ALGMGIVMVLMGLAQ-------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWAL  144 (408)
T ss_pred             HHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHH
Confidence            998888887776553                   67888899999999855 45777788899998777      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       169 ~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ++.....++|..++|.+++.+.+..+|++.|++.++..++..+..++.
T Consensus       145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (408)
T PRK09874        145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFC  192 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888899999998887766665544443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=5.1e-20  Score=188.04  Aligned_cols=175  Identities=11%  Similarity=0.085  Sum_probs=145.8

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHH
Q 011743           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (478)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~   90 (478)
                      ++.+|..+.+.....+..+......+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++|| +||||.+.++.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~   81 (394)
T PRK11652          4 QRNVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMS   81 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHH
Confidence            345677777777777777766655555554 467899999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      +.+++.+++..+.                   +.+.+++.|++.|++.+...+....+..|.+++++      ++++.++
T Consensus        82 ~~~~~~~~~~~~~-------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  136 (394)
T PRK11652         82 IFILGTLVALFAH-------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSL  136 (394)
T ss_pred             HHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHH
Confidence            9998888776653                   67888999999999998888877888888888766      7888898


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~  212 (478)
                      ...+..++..++|.+++++.+..||++.|++.++..++..+.
T Consensus       137 ~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        137 LNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            888899999999999999988889999999877665544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.87  E-value=2e-20  Score=192.85  Aligned_cols=165  Identities=10%  Similarity=0.091  Sum_probs=142.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      +++......+..+.+.+..+.. .++..++++++|.++.+.+++.+++.++..++.++.|+++|| +|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence            3455555566666666665544 444456778999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      +++.+....+.                   +.+.++++|++.|+|.|...+...+++.|.+|+++      |+++.++..
T Consensus        94 ~~~~~~~~~~~-------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~  148 (426)
T PRK12307         94 SVGTGLSGLAS-------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLV  148 (426)
T ss_pred             HHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHH
Confidence            99998887765                   78889999999999999999999999999999887      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSV  204 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~  204 (478)
                      .+.++|..+++.+.+.+.+..+||+.|++...
T Consensus       149 ~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        149 SGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            99999999999999988888899999987544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.87  E-value=6.3e-20  Score=187.52  Aligned_cols=190  Identities=14%  Similarity=0.057  Sum_probs=138.4

Q ss_pred             CCCcccccccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHH-HHHHHhhHHHHHhhhccc
Q 011743            2 GDKVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLS   80 (478)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~G   80 (478)
                      -+.|..+..+...+..+.+++..++.+++.....+.++.|+++++|.+..+.|++.+.+.+ ...+.++.+|+ +|| +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g   79 (393)
T PRK15011          2 HNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RG   79 (393)
T ss_pred             CCCcccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-cc
Confidence            3556666667677778888888999999999999999999999999999999999876655 45555556666 999 89


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChh
Q 011743           81 RFATCL-VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK  159 (478)
Q Consensus        81 r~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~  159 (478)
                      |||.++ .+.++.+++..+...+.                   +.+.+++.+.+.+...+...|...++..|+.++++  
T Consensus        80 ~r~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  138 (393)
T PRK15011         80 DRKSLIVFCCLLGVLACTLFAWNR-------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG--  138 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc--
Confidence            998754 45555556666555543                   45555444444333334667777787777665443  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          160 GAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       160 ~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                       |. .+...++...+.++|..++|.+++++.+..|||..|++.++..++..+..+..
T Consensus       139 -~~-~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  193 (393)
T PRK15011        139 -RE-AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF  193 (393)
T ss_pred             -ch-HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence             10 23444677888999999999999999988999999998887766555544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.87  E-value=2.6e-20  Score=187.70  Aligned_cols=166  Identities=11%  Similarity=0.030  Sum_probs=135.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      ..+...+..++.....+...+.+|.++++++|++..+.+++.+.+.++..++.++.|+++|| +||||.+.++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence            35566667777777777777888878999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .+++..+.                  .+.+.+++.|+++|++.+.. +...++++|++|+++      |+++.++.....
T Consensus        81 ~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~  135 (366)
T TIGR00886        81 CLWAGLAV------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWG  135 (366)
T ss_pred             HHHHHHHh------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHh
Confidence            88877653                  15677889999999996654 556789999999877      899999988888


Q ss_pred             HHHHHHHHHHHHhhhc----------cchhHHHHH-HHHHHHH
Q 011743          176 TLAAMIGVTAIVYVFI----------DQGWWLGFL-ISSVATL  207 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~----------~~~~~~~f~-i~~~~~~  207 (478)
                      ++|..+++.+++.+..          ..+||+.|+ +.++...
T Consensus       136 ~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       136 NMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            8888888877766543          247999994 3344433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.87  E-value=4.2e-20  Score=191.36  Aligned_cols=152  Identities=11%  Similarity=0.077  Sum_probs=133.6

Q ss_pred             HhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011743           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (478)
Q Consensus        33 ~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  112 (478)
                      .+...++.+ .+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.+++..+.         
T Consensus        41 ~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------  109 (434)
T PRK11663         41 SFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSS---------  109 (434)
T ss_pred             hHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHh---------
Confidence            444455544 56799999999999999999999999999999999 8999999999999999988887764         


Q ss_pred             CCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011743          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (478)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  192 (478)
                                +.+.+++.|++.|++.|...+...+++.|++|+++      |++++++++.+.++|..++|.+++++.+.
T Consensus       110 ----------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663        110 ----------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             ----------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                      67788889999999999989999999999999877      99999999999999999999999999888


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 011743          193 QGWWLGFLISSVATLIGLI  211 (478)
Q Consensus       193 ~~~~~~f~i~~~~~~~~~~  211 (478)
                      +|||+.|++.++..++..+
T Consensus       174 ~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        174 YGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            9999999988776554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=9.6e-21  Score=190.80  Aligned_cols=153  Identities=10%  Similarity=0.049  Sum_probs=133.7

Q ss_pred             HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 011743           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (478)
Q Consensus        37 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  116 (478)
                      ....++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++.+++.+++..+.             
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-------------   81 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST-------------   81 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence            33456788999999999999999999999999999999999 8999999999999999988887764             


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHhhhccchh
Q 011743          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV-TAIVYVFIDQGW  195 (478)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p-~i~~~l~~~~~~  195 (478)
                            +.+.+++.|++.|++.+...+...+++.|++|+++      |++++++.....++|..++| .+++.+.+..+|
T Consensus        82 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  149 (379)
T TIGR00881        82 ------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW  149 (379)
T ss_pred             ------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence                  67888999999999999999999999999999877      89999999999999999999 566777777899


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 011743          196 WLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       196 ~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ++.|++.++..++..+..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       150 HWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             hhHHHHHHHHHHHHHHHHhe
Confidence            99999887766554444443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.87  E-value=2.2e-20  Score=188.02  Aligned_cols=154  Identities=17%  Similarity=0.113  Sum_probs=131.5

Q ss_pred             HHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011743           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (478)
Q Consensus        35 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  114 (478)
                      ...+.+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++.++.++.+++.+++..+.           
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~-----------   89 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD-----------   89 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH-----------
Confidence            3455667888999999999999999999999999999999999 8999999999999999998888765           


Q ss_pred             CCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 011743          115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG  194 (478)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  194 (478)
                              +.+.++++|++.|++.+...+.....+.+++| ++      |+++.++...+.++|..+++.+.+.+.+..+
T Consensus        90 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (377)
T TIGR00890        90 --------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEG  154 (377)
T ss_pred             --------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhccc
Confidence                    78889999999999999888888888888886 34      7899999999989998876666666666789


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh
Q 011743          195 WWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       195 ~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ||+.|++.++..++..+..+.
T Consensus       155 ~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       155 VPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999988876665544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.87  E-value=8.3e-20  Score=190.76  Aligned_cols=148  Identities=10%  Similarity=0.033  Sum_probs=130.7

Q ss_pred             ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhH
Q 011743           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA  124 (478)
Q Consensus        45 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (478)
                      ++|++..+.|.+.+.+.++..++.+++|+++|| +|||+++..+.++..++.+++..+.                 ..+.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~  131 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAA-----------------GGGI  131 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHH-----------------HcCc
Confidence            689999999999999999999999999999999 8999999999999888887765543                 1146


Q ss_pred             HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHH
Q 011743          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ-GWWLGFLISS  203 (478)
Q Consensus       125 ~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~-~~~~~f~i~~  203 (478)
                      ..+++.|+++|++.+...|....+++|++|+++      |++++++...+.++|..++|.+++++.+.. +|++.|++.+
T Consensus       132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~  205 (465)
T TIGR00894       132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG  205 (465)
T ss_pred             hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence            678899999999999999999999999999888      999999999999999999999999998874 9999999988


Q ss_pred             HHHHHHHHHHHhc
Q 011743          204 VATLIGLIALAIG  216 (478)
Q Consensus       204 ~~~~~~~~~~~~~  216 (478)
                      +..++..++++..
T Consensus       206 ~~~~~~~~~~~~~  218 (465)
T TIGR00894       206 IVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHHHHHHHHHH
Confidence            8766665555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.87  E-value=2.8e-20  Score=191.50  Aligned_cols=344  Identities=13%  Similarity=0.063  Sum_probs=218.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      ....++...++..++.....+.+|.+. ++++.++.+.|++.+.+.+...++.++.|+++|| +||||++..+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~   95 (417)
T PRK10489         18 AFRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLG   95 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHH
Confidence            344556667777777666666677665 4677899999999999999999999999999999 89999999988888877


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      ...+.......              ..+.+.+++.|++.|++.+...++..+.+.|.+|+++      |+++.++.+...
T Consensus        96 ~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  155 (417)
T PRK10489         96 FIGLALNAFLP--------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTV  155 (417)
T ss_pred             HHHHHHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHH
Confidence            76654321000              1256778889999999998888999999999998777      889999999999


Q ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhh
Q 011743          176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEEL  255 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (478)
                      ++|..+||.+++.+.+..+|++.|++.++..+++.+.....++    .+++.++                  .....++.
T Consensus       156 ~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------------------~~~~~~~~  213 (417)
T PRK10489        156 RLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA----LPPPPQP------------------REHPLRSL  213 (417)
T ss_pred             hHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC----CCCCCcc------------------cccchHHH
Confidence            9999999999999988789999998877766655544433221    1110000                  00000000


Q ss_pred             hhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhh
Q 011743          256 YEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVT  335 (478)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  335 (478)
                      .+                 .  +.                      .+...+.+...+...+...... ....+.+.+..
T Consensus       214 ~~-----------------~--~~----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~  251 (417)
T PRK10489        214 LA-----------------G--FR----------------------FLLASPVVGGIALLGGLLTMAS-AVRVLYPALAD  251 (417)
T ss_pred             HH-----------------H--HH----------------------HHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHH
Confidence            00                 0  00                      0000111111111111111111 11122222322


Q ss_pred             hhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011743          336 QGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRR  415 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~  415 (478)
                      +..+.+.      ...+.+.....++.++...+.+++.    +|.       ++.+.+..+.++.+++++...+.     
T Consensus       252 ~~~g~~~------~~~g~~~~~~~~g~~ig~~~~~~l~----~~~-------~~~~~l~~~~~~~~~~~~~~~~~-----  309 (417)
T PRK10489        252 EVWQMGA------AQIGLLYAAVPLGAALGALTSGWLA----HSA-------RPGLLMLLSTLGSFLAVGLFGLM-----  309 (417)
T ss_pred             hccCCCh------hHhHHHHHHHHHHHHHHHHHHHHhh----hcc-------CcchHHHHHHHHHHHHHHHHHcc-----
Confidence            2122221      1223344444555555555544432    221       23344566666666666554433     


Q ss_pred             hhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          416 NAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       416 ~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                                .+.+......++.+++.+...+...++..+..|++.||+++|+.+...++|+
T Consensus       310 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  361 (417)
T PRK10489        310 ----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD  361 (417)
T ss_pred             ----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH
Confidence                      2344555667778888888888888999999999999999999988887764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.87  E-value=1.2e-19  Score=187.70  Aligned_cols=168  Identities=16%  Similarity=0.152  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHcccccC---CchhhHhHHHHHHH---HHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           22 VLSALENMGFIANGISMVLYFKNEMH---FDIAGASNTLTNFF---GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        22 ~~~~~~~~~~~~v~~~l~~yl~~~lg---~~~~~~~~~~~~~~---~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      +..+++.+... +..++..++.++++   .+..+.+.+...+.   ++..++.+++|+++|| +||||++..+.++++++
T Consensus        29 ~~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         29 SGNLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHH
Confidence            34555555544 46677778888874   45554444444444   4444889999999999 89999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .+++.++.+....     |      ..+...+++.|+++|+|.|+..|...++++|++|+++      |++..++.+...
T Consensus       107 ~~~~~~~~~~~~~-----~------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~  169 (432)
T PRK10406        107 SLVIACLPGYETI-----G------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTL  169 (432)
T ss_pred             HHHHhhcCCchhH-----H------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHH
Confidence            9888775411000     0      0134578899999999999999999999999999888      889999888888


Q ss_pred             HHHHHHHHHHHHhhh--------ccchhHHHHHHHHHHHHH
Q 011743          176 TLAAMIGVTAIVYVF--------IDQGWWLGFLISSVATLI  208 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~--------~~~~~~~~f~i~~~~~~~  208 (478)
                      +.|..+++.+...+.        ..+|||++|++.++..++
T Consensus       170 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        170 IGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence            888888877655443        257999999987665443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.86  E-value=4.2e-20  Score=192.45  Aligned_cols=151  Identities=11%  Similarity=0.080  Sum_probs=127.1

Q ss_pred             HHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 011743           40 LYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL  119 (478)
Q Consensus        40 ~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  119 (478)
                      ..+.+++|.+..+++++.+.+.+...++.++.|+++|| +|||++++.+.++..++.+++..+.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            34567999999999999999999999999999999999 8999999999999998888877664                


Q ss_pred             cchhHHHHHH-HHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 011743          120 KGAIAAYFYG-SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLG  198 (478)
Q Consensus       120 ~~~~~~~~~~-~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~  198 (478)
                         +.+.+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++++.+.+|||+.
T Consensus       106 ---~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~  175 (455)
T TIGR00892       106 ---NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS  175 (455)
T ss_pred             ---hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence               4555544 5688999998876666778888885 45      89999999999999999999999999888999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC
Q 011743          199 FLISSVATLIGLIALAIGK  217 (478)
Q Consensus       199 f~i~~~~~~~~~~~~~~~~  217 (478)
                      |++.+++.+++.+..++.+
T Consensus       176 f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       176 FLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9999887766655544443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=7e-20  Score=190.68  Aligned_cols=174  Identities=9%  Similarity=0.023  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHh---HHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           18 TFVFVLSALENMGFIAN---GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        18 ~~l~~~~~~~~~~~~~v---~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |.++...++....+|..   .....+|+.++ |++..+.+++.+++.++..++.++.|+++|| +|||++++++.++.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i  105 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHH
Confidence            33334333444444432   23344577777 9999999999999999999999999999999 8999999999999998


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++.+....               ..+...+++.|++.|++.|...|.....+.|++|+++      |++++++++.+
T Consensus       106 ~~~~~~~~~~~---------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~  164 (452)
T PRK11273        106 VMLFMGFVPWA---------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCA  164 (452)
T ss_pred             HHHHHHhhhcc---------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHH
Confidence            88877765310               1256778888999999999988888888999999877      89999999898


Q ss_pred             HHHHHH-HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          175 TTLAAM-IGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       175 ~~~g~~-~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .++|+. .+|.++..+....+||+.|++.++..++..++..
T Consensus       165 ~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        165 HNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             HHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            998864 4565443333345899999998776655444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.86  E-value=3e-19  Score=187.88  Aligned_cols=176  Identities=14%  Similarity=0.078  Sum_probs=130.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhh-HhH-----HHHHHHHHHHHHhhHHHHHhhhccchhHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAG-ASN-----TLTNFFGSTFLLCLVGGFISDTYLSRFATCLV   87 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~   87 (478)
                      ++......+..+++.+-+. +..+...++.++++.+..+ ..+     +.++..++..++.++.|+++|| +|||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence            3455555667777766544 5556667888888644322 122     2466678888999999999999 899999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhH
Q 011743           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (478)
Q Consensus        88 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~  167 (478)
                      ++++++++.++++++.+...+.           ...+..+++.|+++|+|.|+..++..++++|++|+++      |++.
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g-----------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~  155 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG-----------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFM  155 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH-----------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHH
Confidence            9999999999998775210000           0012348899999999999999999999999999988      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh--------ccchhHHHHHHHHHHHHH
Q 011743          168 FNFYLFATTLAAMIGVTAIVYVF--------IDQGWWLGFLISSVATLI  208 (478)
Q Consensus       168 ~~~~~~~~~~g~~~~p~i~~~l~--------~~~~~~~~f~i~~~~~~~  208 (478)
                      .++...+.++|..+++.+...+.        ..+|||+.|++.++..++
T Consensus       156 ~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        156 GSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            99888888888887776654432        257999999987654443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.86  E-value=1.2e-19  Score=185.42  Aligned_cols=152  Identities=13%  Similarity=0.155  Sum_probs=131.5

Q ss_pred             HHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011743           31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP  110 (478)
Q Consensus        31 ~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  110 (478)
                      ++.+.+.+| .+++++|.|..+.+++.+.+.++..++.++.|+++|| +||||++..+..+++++.+++.+++       
T Consensus        25 ~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~-------   95 (393)
T PRK09705         25 LTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP-------   95 (393)
T ss_pred             hhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc-------
Confidence            354555555 5678999999999999999999999999999999999 8999999999999999999998875       


Q ss_pred             CCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011743          111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (478)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  190 (478)
                                  +...++++|+++|+|.+...+...+.+.|++| ++      |+++++.+..+.++|..+++.+++++.
T Consensus        96 ------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         96 ------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             ------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        67788999999999999999999999999986 55      889999999999999999999999888


Q ss_pred             ccc-hhHHHHHHHHHHHHHHH
Q 011743          191 IDQ-GWWLGFLISSVATLIGL  210 (478)
Q Consensus       191 ~~~-~~~~~f~i~~~~~~~~~  210 (478)
                      ++. +||..+.+.++..++..
T Consensus       157 ~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        157 QHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HhcCCHHHHHHHHHHHHHHHH
Confidence            765 89998876555444333

>PRK11043 putative transporter; Provisional

Probab=99.86  E-value=2.6e-19  Score=183.27  Aligned_cols=170  Identities=17%  Similarity=0.187  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHH--cccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLY--FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~y--l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~   97 (478)
                      ++....+...++++...+.|.+  +.+++|.++.+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~   86 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSL   86 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHH
Confidence            3333333444444444455544  678999999999999999999999999999999999 8999999999999888887


Q ss_pred             HHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHH
Q 011743           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (478)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (478)
                      +...+.                   +.+.+++.|+++|++.+...+...+++.|.+|+++      +.+.++......++
T Consensus        87 ~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  141 (401)
T PRK11043         87 GMLWVE-------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVAL  141 (401)
T ss_pred             HHHHhc-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHH
Confidence            776653                   67788899999999988888888889999999776      77888888888889


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       178 g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      |..++|.+++++.+..|||+.|++.++..++..+..+.
T Consensus       142 ~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        142 SPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988899999999887776665554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.86  E-value=1.5e-19  Score=183.86  Aligned_cols=155  Identities=9%  Similarity=0.091  Sum_probs=138.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      .+.|.++.+++..++...+...+.+.+|.|.. ++|.+..++|++.+.+.++..++.++.|+++|| +||||.+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~   80 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLI   80 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHH
Confidence            34677899999999999998888899998876 689999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+++...+..+.                   +.+.++++|+++|++.+...|...+.+.+..++++      |++.++++
T Consensus        81 ~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  135 (381)
T PRK03633         81 FAAGCAGLGLMV-------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAY  135 (381)
T ss_pred             HHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHH
Confidence            999888877664                   67888899999999999988888777888888766      89999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccc
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQ  193 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~  193 (478)
                      ....++|..+||.+++.+.+..
T Consensus       136 ~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633        136 MMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999887653

>PRK03699 putative transporter; Provisional

Probab=99.86  E-value=6.8e-19  Score=179.92  Aligned_cols=174  Identities=14%  Similarity=0.151  Sum_probs=143.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      ++|..+..++..++........-..++. +.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence            4566676666666666665544455544 567899999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++.+++..+.                   +.+.+++.|+++|++.|...+...+.+.|.+|+++      |++..+..+
T Consensus        83 ~i~~~l~~~~~-------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~  137 (394)
T PRK03699         83 ILAVAGLMFSH-------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTD  137 (394)
T ss_pred             HHHHHHHHHcc-------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHH
Confidence            99888877654                   67788899999999999999999999999998776      888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHH
Q 011743          173 FATTLAAMIGVTAIVYVFI-DQGWWLGFLISSVATLIGLIAL  213 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~-~~~~~~~f~i~~~~~~~~~~~~  213 (478)
                      ...++|+.++|.+.+++.. ..+||+.|.+.++..++..+..
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        138 SFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            8888999999998887754 5799999998777665544433

>TIGR00897 2A0118 polyol permease family

Probab=99.86  E-value=8e-19  Score=179.90  Aligned_cols=171  Identities=8%  Similarity=0.005  Sum_probs=143.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      +.||.+....+..++..++.+....+++.|+ +++|.+..+++++.+.+.++..++.++.|+++|| +||||++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence            6788899999999999999888888999888 5789999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      ..++.+++......               ..+...+++.|++.|+|.+...+...+.+.+.+|+++      |++++++.
T Consensus        88 ~~~~~~~~~~~~~~---------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  146 (402)
T TIGR00897        88 WCVGHAAFIVFGLG---------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWF  146 (402)
T ss_pred             HHHHHHHHHHHhcc---------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHH
Confidence            88887655321100               1256777889999999998888888888889998877      99999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhhccchhHHHHHHHHHH
Q 011743          172 LFATTLAA-MIGVTAIVYVFIDQGWWLGFLISSVA  205 (478)
Q Consensus       172 ~~~~~~g~-~~~p~i~~~l~~~~~~~~~f~i~~~~  205 (478)
                      ....++|. .++|.+++++.+..||+..++.....
T Consensus       147 ~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       147 WAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99999996 58999999888878866655544333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.85  E-value=4.4e-20  Score=193.00  Aligned_cols=156  Identities=8%  Similarity=-0.111  Sum_probs=128.9

Q ss_pred             HHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 011743           39 VLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC  118 (478)
Q Consensus        39 ~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  118 (478)
                      ...+.+++|++..+.|++.+.+.++..++.+++|+++|| +||||++..+.++.+++.++++.....             
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~-------------  117 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGS-------------  117 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            345678999999999999999999999999999999999 899999999988888877666543100             


Q ss_pred             ccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc---hh
Q 011743          119 LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ---GW  195 (478)
Q Consensus       119 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~---~~  195 (478)
                       -..+.+.+++.|+++|++.+...|...++++|++|+++      |++++++...+.++|..+++.+..++.+..   +|
T Consensus       118 -~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~  190 (467)
T PRK09556        118 -GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV  190 (467)
T ss_pred             -ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence             01278889999999999999999999999999999988      999999999999999999998887765542   58


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 011743          196 WLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       196 ~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +..|.+.++..++..+..++
T Consensus       191 ~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        191 IGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            88888877666544444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.85  E-value=4e-19  Score=182.82  Aligned_cols=148  Identities=14%  Similarity=0.112  Sum_probs=130.9

Q ss_pred             cccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 011743           42 FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG  121 (478)
Q Consensus        42 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (478)
                      +.+++|.+..++++..+++.++..++.++.|+++|| +||||++..+.++++++.+++..+.                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            567899999999999999999999999999999999 8999999999999999988887664                  


Q ss_pred             hhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 011743          122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLI  201 (478)
Q Consensus       122 ~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i  201 (478)
                       +.+.++++|+++|++.+...+...+.+.|.+|+++      |.+.+++.....++|..+||.+++.+.+..|||+.|++
T Consensus       103 -~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        103 -SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence             77889999999999988766777788899999877      88999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011743          202 SSVATLIGLIALAI  215 (478)
Q Consensus       202 ~~~~~~~~~~~~~~  215 (478)
                      .++..+++.+..++
T Consensus       176 ~~~~~~i~~~~~~~  189 (413)
T PRK15403        176 IAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877666554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.85  E-value=2.8e-19  Score=182.06  Aligned_cols=174  Identities=12%  Similarity=0.078  Sum_probs=152.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      ++.++.+.+..++...+.+.+.+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHH
Confidence            466788888888888888877777765 467899999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.+++..+.                   +.+.+++.|++.|++.+...+...+++.|++|+++      |++.+++...
T Consensus        80 ~~~~l~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  134 (382)
T PRK10091         80 IGNAMFTLSS-------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVS  134 (382)
T ss_pred             HHHHHHHHhC-------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHH
Confidence            9998887764                   78889999999999999988888888999988766      8889999888


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      +.++|..++|.+++++.+..+||+.|++.++..++..+...
T Consensus       135 ~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        135 GMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             HHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888999999998877665554433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.2e-20  Score=187.09  Aligned_cols=180  Identities=12%  Similarity=0.046  Sum_probs=160.2

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHH
Q 011743           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (478)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~   90 (478)
                      +...+.+..+++..++|++-=|.+-. ...-.++.+|.++...|.+...+.+...++.|+.|+++|| +.||+++.+|.+
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHH
Confidence            34456678888999999998886665 3345677899999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      +++++.+....+.                   .++++.+.|.+.|+|.+.+.|..+++++|.||+.+      |++.+++
T Consensus       107 iW~~Av~~~~fs~-------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~i  161 (493)
T KOG1330|consen  107 IWTLAVFASGFSN-------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGI  161 (493)
T ss_pred             HHHHHHHHHHHHH-------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHH
Confidence            9999999998875                   79999999999999999999999999999999998      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhcC
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGK  217 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~  217 (478)
                      +|+++++|..+|.++++.+.+..+ |||+|...+++.++..++..++.
T Consensus       162 fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  162 FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence            999999999999999998887665 99999999998876666555543

>TIGR00898 2A0119 cation transport protein

Probab=99.84  E-value=5e-19  Score=186.74  Aligned_cols=148  Identities=17%  Similarity=0.115  Sum_probs=129.6

Q ss_pred             HHcccccCCc---hhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 011743           40 LYFKNEMHFD---IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (478)
Q Consensus        40 ~yl~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  116 (478)
                      .-+.+++|++   ..+.+++.+++.++..++.++.|+++|| +|||+++.++.++.+++.++..++.             
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~-------------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP-------------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            3467889998   8999999999999999999999999999 8999999999999999888877664             


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 011743          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWW  196 (478)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~  196 (478)
                            +.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++...+..+|..++|.++..+.   +||
T Consensus       179 ------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr  243 (505)
T TIGR00898       179 ------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIP---DWR  243 (505)
T ss_pred             ------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhh---HHH
Confidence                  78889999999999999999999999999999888      889999988888999999998876664   399


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 011743          197 LGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       197 ~~f~i~~~~~~~~~~~~~~~  216 (478)
                      +.|++.++..++..+..++.
T Consensus       244 ~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       244 WLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99998887766665555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.84  E-value=3.8e-19  Score=186.22  Aligned_cols=156  Identities=14%  Similarity=0.128  Sum_probs=124.8

Q ss_pred             ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhc-ccCCCCCCCCCccccchh
Q 011743           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS-KSLHPPDCGKSSCLKGAI  123 (478)
Q Consensus        45 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  123 (478)
                      ++|.+..+.+++.+++.++..+++++.|+++|| +||||++.++.+++.++.+....+... ....+        ++...
T Consensus        49 ~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~--------~~~~~  119 (479)
T PRK10077         49 SESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP--------DNTGY  119 (479)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccc--------cchhH
Confidence            348899999999999999999999999999999 899999999999998888776653200 00000        00124


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh--------ccchh
Q 011743          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF--------IDQGW  195 (478)
Q Consensus       124 ~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~--------~~~~~  195 (478)
                      ...++++|+++|++.|...|...++++|++|+++      |+++++....+..+|..+++.+++.+.        +..||
T Consensus       120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  193 (479)
T PRK10077        120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW  193 (479)
T ss_pred             HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence            5678899999999999999999999999999888      999999999999999999887765543        34689


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 011743          196 WLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       196 ~~~f~i~~~~~~~~~~~~~~  215 (478)
                      |+.|++.++..++..+..++
T Consensus       194 r~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        194 RYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            99999887766655444333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.84  E-value=4.9e-19  Score=185.48  Aligned_cols=174  Identities=10%  Similarity=0.065  Sum_probs=132.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +.........++.....+.+.+.+ .++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence            334444444455555555444444 46688999999999999999999999999999999999 8999999999999888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++..+.                   +...+++.|++.|++.+...+ ....++|++|+++      |++++++....
T Consensus       114 ~~~~~~~~~-------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~  167 (476)
T PLN00028        114 AVFCMSLVS-------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGW  167 (476)
T ss_pred             HHHHHHHhc-------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHH
Confidence            888777664                   667788899999999886543 4567899999887      99999998877


Q ss_pred             HHHHHHHHHHHHHhhhc---------cchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          175 TTLAAMIGVTAIVYVFI---------DQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~---------~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .++|..+++.+.+.+..         ..|||+.|++.+++.++..+..++.
T Consensus       168 ~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        168 GNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            78888777666654421         2489999999888776555444443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.84  E-value=3.1e-19  Score=185.37  Aligned_cols=146  Identities=15%  Similarity=0.220  Sum_probs=125.0

Q ss_pred             CchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHH
Q 011743           48 FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYF  127 (478)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (478)
                      .+..+.+++.+++.++..++.++.|+++|| +||||++..+.++.+++.+++.....                ..+.+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~  130 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF----------------ALSVEML  130 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHH
Confidence            338999999999999999999999999999 89999999999999999888865532                1245688


Q ss_pred             HHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhhhccchhHHHHHHHHH
Q 011743          128 YGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI---VYVFIDQGWWLGFLISSV  204 (478)
Q Consensus       128 ~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~---~~l~~~~~~~~~f~i~~~  204 (478)
                      +++|+++|+|.+...+...++++|++|+++      |++++++.+...++|..+++.++   +.+.+..+||+.|++.++
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~  204 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI  204 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999888      99999999999999999999998   666667899999999666


Q ss_pred             HHHHHHHHHHhc
Q 011743          205 ATLIGLIALAIG  216 (478)
Q Consensus       205 ~~~~~~~~~~~~  216 (478)
                      ..++.++..++.
T Consensus       205 ~~~~~~~~~~~l  216 (481)
T TIGR00879       205 PAGLLFLGLFFL  216 (481)
T ss_pred             HHHHHHHHHhcC
Confidence            555554444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.84  E-value=1e-18  Score=181.14  Aligned_cols=175  Identities=17%  Similarity=0.157  Sum_probs=126.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHccccc--CCchhhHhHHH-----HHHHHHHHHHhhHHHHHhhhccchhHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEM--HFDIAGASNTL-----TNFFGSTFLLCLVGGFISDTYLSRFATC   85 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~l--g~~~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Gr~~~~   85 (478)
                      ++|..+..++..+++.+-...+....+.++.+++  +.++.+ +.+.     ++..+...++.++.|+++|| +|||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHH
Confidence            3455666666667766665544444445566555  666663 4443     23334466777888999999 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhh
Q 011743           86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA  165 (478)
Q Consensus        86 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~  165 (478)
                      ..+.++++++.+++.++++.+...           ......+++.|+++|++.|+..|....++.|++|+++      |+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg  160 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIG-----------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KA  160 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHH-----------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------Cc
Confidence            999999999999888764210000           0012358889999999999999999999999999888      88


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh--------ccchhHHHHHHHHHHH
Q 011743          166 SYFNFYLFATTLAAMIGVTAIVYVF--------IDQGWWLGFLISSVAT  206 (478)
Q Consensus       166 ~~~~~~~~~~~~g~~~~p~i~~~l~--------~~~~~~~~f~i~~~~~  206 (478)
                      +..+....+..+|..+++.+...+.        ..+|||+.|++.++..
T Consensus       161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence            8888888888888888877666554        2479999999876654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.84  E-value=1.2e-18  Score=176.41  Aligned_cols=158  Identities=13%  Similarity=0.135  Sum_probs=137.8

Q ss_pred             HHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011743           31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP  110 (478)
Q Consensus        31 ~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  110 (478)
                      .....+.++.+. +++|+++.+.+++.+++.++..++.++.|+++|| +|||+++..+.++.+++..++....       
T Consensus         7 ~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~-------   77 (377)
T PRK11102          7 IDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ-------   77 (377)
T ss_pred             HHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc-------
Confidence            344556777665 5699999999999999999999999999999999 8999999999999999988887654       


Q ss_pred             CCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011743          111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (478)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  190 (478)
                                  +.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++.+.
T Consensus        78 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         78 ------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        67778899999999999999999999999999877      899999999999999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          191 IDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       191 ~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +..+|++.|++.++..++..+....
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        140 VWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999887776655544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.84  E-value=5.2e-19  Score=182.33  Aligned_cols=354  Identities=10%  Similarity=0.006  Sum_probs=203.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +..|.+.+..++..+++..+.++++.|+++++|+++.+.|.+.+.+.+...+++++.|+++|| +||||++.++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            567777778888888888889999999999999999999999999999999999999999999 8999999887766555


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +...+......+               .-......+..+.++..+...+...+.+.++.++..    ++++..++..+..
T Consensus        89 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~  149 (420)
T PRK09528         89 LFGPFFIYVFAP---------------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGRARMW  149 (420)
T ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchhhHHh
Confidence            433222110000               000011222233333333333333333334332111    1256677888888


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchh
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEE  254 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (478)
                      .++|..++|.+++++.+ .+|+..|++.++..++.++..+..+++.++++...++               .  .+     
T Consensus       150 ~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~-----  206 (420)
T PRK09528        150 GSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA---------------L--GA-----  206 (420)
T ss_pred             hhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc---------------h--hc-----
Confidence            89999999999998876 5899999988777666665555443321111000000               0  00     


Q ss_pred             hhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhh
Q 011743          255 LYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSV  334 (478)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  334 (478)
                                    +   .+..++.+....                  .+ .+.++......+.....+..+.+..+.+.
T Consensus       207 --------------~---~~~~~~~~~~~~------------------l~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~  250 (420)
T PRK09528        207 --------------N---ASAVSLKDALAL------------------LK-LPKFWFLVLYVIGVACFYDVFDQQFPNFF  250 (420)
T ss_pred             --------------c---cccccHHHHHHH------------------cc-CCCeEeehHHHHHHHHHHHHHHHHHHHHH
Confidence                          0   000000000000                  00 01111111112222222222222222222


Q ss_pred             hhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011743          335 TQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKR  414 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~  414 (478)
                      .+... +...+  ....+.+..++.+...+..++.+++.+++.+|           +.+..+.++.+++.....+.    
T Consensus       251 ~~~~~-~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~----  312 (420)
T PRK09528        251 ASFFA-TPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFA----  312 (420)
T ss_pred             HHHHh-ccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhc----
Confidence            11111 10100  11123444445556666677777665554333           44667777777776666554    


Q ss_pred             HhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHH-HHHHhhcc
Q 011743          415 RNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHL-HFCHCHLA  476 (478)
Q Consensus       415 ~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~-~~~~~~lg  476 (478)
                                 .+.++++...++.+++.....+...+++.+..|++.+++..+. +++..++|
T Consensus       313 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg  364 (420)
T PRK09528        313 -----------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLG  364 (420)
T ss_pred             -----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHH
Confidence                       3556677778888888888888888999999999999887554 44444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.84  E-value=2e-18  Score=182.22  Aligned_cols=180  Identities=12%  Similarity=0.055  Sum_probs=133.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcc----cccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFK----NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT   90 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~----~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~   90 (478)
                      +.+....+..+...+....+....+..-.    .+.+.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus        16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~   94 (502)
T TIGR00887        16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELI   94 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence            34444444445544443333333332211    1234566778999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      +..++.+++..+....             ...+...++++|+++|++.|+..+..+.+++|.+|+++      |+++.++
T Consensus        95 ~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~  155 (502)
T TIGR00887        95 IMIIATVASGLSPGSS-------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAA  155 (502)
T ss_pred             HHHHHHHHHHHccCcc-------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHH
Confidence            9999988777653100             00136789999999999999999999999999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhc-----------------------cchhHHHHHHHHHHHHHHHHHHH
Q 011743          171 YLFATTLAAMIGVTAIVYVFI-----------------------DQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~-----------------------~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .+....+|..+++.++.++..                       ..+||+.|.+.++..++..+..+
T Consensus       156 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~  222 (502)
T TIGR00887       156 VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRL  222 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887765421                       24799999877766555444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00901 2A0125 AmpG-related permease

Probab=99.84  E-value=1.7e-18  Score=174.36  Aligned_cols=332  Identities=10%  Similarity=0.031  Sum_probs=196.9

Q ss_pred             HHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHHHhhcccCCC
Q 011743           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY----LSRFATC-LVFGTLEVLSLVMLTIQAYSKSLHP  110 (478)
Q Consensus        36 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Gr~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  110 (478)
                      ......+.+++|+|.++.+..... .+...+ .++.|.++||+    +||||.+ +.+.++.++....+.....      
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------   79 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------   79 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc------
Confidence            333444556889999999999755 344443 88999999994    2999974 5666667666555544321      


Q ss_pred             CCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011743          111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (478)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  190 (478)
                                ..+.+.+....++.+++.+...++..+++.|++|+++      |+++.++...+.++|..+++.+++.+.
T Consensus        80 ----------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        80 ----------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      1255566666777888888889999999999999877      899999999999999999999999888


Q ss_pred             ccch--------hHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhh
Q 011743          191 IDQG--------WWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIE  262 (478)
Q Consensus       191 ~~~~--------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (478)
                      ...+        ||..|++.++..+++.+..++..++..+.++++++  +                   ..+..+     
T Consensus       144 ~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~--~-------------------~~~~~~-----  197 (356)
T TIGR00901       144 SPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKP--L-------------------TQAVLK-----  197 (356)
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchh--H-------------------HHHHHH-----
Confidence            7777        99999998887766555544333321111100000  0                   000000     


Q ss_pred             ccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHH--HHHHHHHHH-HHHHHHHHHhHhhcchhhhhhhcc
Q 011743          263 RVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEV--KILARMMPI-LASTIIMNTCLAQLQTLSVTQGAY  339 (478)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~  339 (478)
                                  .  +.+                     ..+++  ++++..+.. ++....++... .+.+.+... .+
T Consensus       198 ------------~--~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~-~g  240 (356)
T TIGR00901       198 ------------P--IRE---------------------FFQRKNMIQALLLLLLIVLYKLGDSAAT-VLTTLFLLD-MG  240 (356)
T ss_pred             ------------H--HHH---------------------HHHhcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-cC
Confidence                        0  000                     00000  112222211 11122222222 222222222 22


Q ss_pred             cCCCCCCcccCCCCccCchh-HHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011743          340 MDPRLGSIKVPTPSIPVLPL-LFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAF  418 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~-l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~  418 (478)
                      .+..      ..+.+..... +..++..++..++.+++           ++++.+..+.++.+++.....+......+ .
T Consensus       241 ~~~~------~~g~~~~~~~~~~~~~g~~~~g~l~~r~-----------g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~  302 (356)
T TIGR00901       241 FSKE------EIALVAKINGLLGAILGGLIGGIIMQPL-----------NILYALLLFGIVQALTNAGFVWLASNGHH-D  302 (356)
T ss_pred             CCHH------HHHHHhHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHhcCcc-c
Confidence            2211      1122222222 33445555555544443           44455677777666665544443111000 0


Q ss_pred             cCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhc
Q 011743          419 NQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHL  475 (478)
Q Consensus       419 ~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~l  475 (478)
                       +  ....+.+.+....++.+++++...+...++..+.+|+++||+++|+.++..++
T Consensus       303 -~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  356 (356)
T TIGR00901       303 -G--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSAL  356 (356)
T ss_pred             -c--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Confidence             0  00124466677778889999999999999999999999999999999887653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.84  E-value=2.5e-18  Score=178.04  Aligned_cols=172  Identities=15%  Similarity=0.035  Sum_probs=123.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHH-HHHHH-----HHHHHhhHHHHHhhhccchhHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTL-TNFFG-----STFLLCLVGGFISDTYLSRFATCLV   87 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~-~~~~~-----~~~~~~~~~G~laDr~~Gr~~~~~~   87 (478)
                      ++....+++..+++.+-.. ...+....+.++++.++.+.+... +....     ...++.++.|+++|| +||||.+..
T Consensus        14 ~~~~~~~~~~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFF-LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHH
Confidence            3444444455555544443 334555577888998887754433 22222     123577899999999 899999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhH
Q 011743           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (478)
Q Consensus        88 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~  167 (478)
                      +.++..++.+++.++.+.+.+.           ......++++|+++|++.|...++..++++|++|+++      |++.
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~  154 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIG-----------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFY  154 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHH-----------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHH
Confidence            9999999999888764100000           0001256889999999999999999999999999988      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh--------ccchhHHHHHHHHH
Q 011743          168 FNFYLFATTLAAMIGVTAIVYVF--------IDQGWWLGFLISSV  204 (478)
Q Consensus       168 ~~~~~~~~~~g~~~~p~i~~~l~--------~~~~~~~~f~i~~~  204 (478)
                      .++.....++|..+++.+++.+.        +.+|||++|++.+.
T Consensus       155 ~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        155 TSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            99988888888888887776652        45799999987543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.83  E-value=1.3e-18  Score=177.78  Aligned_cols=180  Identities=11%  Similarity=-0.027  Sum_probs=135.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..|.+....++...++..+.++++.|+++++|+++.+.+++.+++.+...++.++.|+++|| +||||.++.+.+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            457778888888888888899999999999999999999999999999999999999999999 8999999988776665


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +..........+...           .......++.+++.+++.+...|...++..|..+  +      ++..++..+..
T Consensus        81 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~  141 (396)
T TIGR00882        81 LFAPFFIYVFGPLLQ-----------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMF  141 (396)
T ss_pred             HHHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhh
Confidence            443322110000000           0123345666788888888888887776655322  1      34566777788


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      .++|..++|.+++.+.+ .+|+..|++.++..++..+..+.
T Consensus       142 ~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       142 GCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             cccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence            89999999999998865 69999999887776665544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.83  E-value=3.6e-18  Score=173.88  Aligned_cols=325  Identities=9%  Similarity=-0.041  Sum_probs=202.7

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHH----HHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC----LVFGTLE   92 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~----~~~~~~~   92 (478)
                      .+.+.+..++...++-...+++|.|++ ++|+|..+.|++.+++.+...+++++.|.++|| +||++..    ..+..+.
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH
Confidence            344555566666666667789999985 689999999999999999999999999999999 8985433    2222222


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .+  .+...+                   .+.+.+++.|.+++.+.+...|...++..+.  +++      |++.++..+
T Consensus        84 ~~--~~~~~~-------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~  134 (382)
T TIGR00902        84 AA--AFSAGA-------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVR  134 (382)
T ss_pred             HH--HHHHhh-------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHH
Confidence            22  111122                   2678888999999999888888887776443  223      788899999


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNP  252 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (478)
                      ...++|..++|.+++++.+.+|||..|++......+.+ .....+++   .++++++                  .+.  
T Consensus       135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~---~~~~~~~------------------~~~--  190 (382)
T TIGR00902       135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPT---IPPKDAI------------------PED--  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCC---CCCCccc------------------ccc--
Confidence            99999999999999999998999999987655432222 22222111   0111000                  000  


Q ss_pred             hhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHH-HHHHHHHHHHhHhhcch
Q 011743          253 EELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMP-ILASTIIMNTCLAQLQT  331 (478)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~~~~~~~~~~~~  331 (478)
                                      +  ..+..++.                      ++-..|+++..+. .++....+...+ .+.+
T Consensus       191 ----------------~--~~~~~~~~----------------------~~l~~~~~~~~l~~~~l~~~~~~~~~-~~~~  229 (382)
T TIGR00902       191 ----------------E--SQGDSAFI----------------------ALLKNPMNLRFLAAVCLIQGAHAAYY-GFSA  229 (382)
T ss_pred             ----------------c--cccchhHH----------------------HHHcChHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence                            0  00000000                      0001122222222 222222222222 2223


Q ss_pred             hhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011743          332 LSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVE  411 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~  411 (478)
                      .+.+ ..+.+..      ..+.+..+..+..++..++    ..++.+|       +++++.+.+|.++.++......+. 
T Consensus       230 ~~l~-~~g~s~~------~~g~l~~~~~~~~i~~~~~----~~~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~-  290 (382)
T TIGR00902       230 IYWQ-AAGISAS------ATGLLWGIGVLAEIIIFAF----SNKLFQN-------CSARDLLLISAIACVGRWAIIGAI-  290 (382)
T ss_pred             HHHH-HCCCCHh------HHHHHHHHHHHHHHHHHHH----hHHHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH-
Confidence            3332 2222211      1222333333333333333    3334555       377778889999988888777665 


Q ss_pred             HHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011743          412 VKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFC  471 (478)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~  471 (478)
                                    .+++.+....++.++..++..+....++.+. |++++++++++++.
T Consensus       291 --------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~  335 (382)
T TIGR00902       291 --------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNA  335 (382)
T ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHH
Confidence                          3567677778999999999999999999988 99999999999863

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.83  E-value=1.4e-18  Score=200.68  Aligned_cols=155  Identities=12%  Similarity=0.077  Sum_probs=127.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCch--hhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDI--AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      +....+++..++.+++..++...+..++..+++.+.  ...+++.+++.+...++.+++|+++|| +|||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHH
Confidence            455556667777777666666666666666666554  346899999999999999999999999 89999999998877


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      +++.++..++..                ..+.+.+++.|+++|++.+...|+..++++|++|+++      |++++++..
T Consensus        88 ~~~~~~~~~~~~----------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~  145 (1146)
T PRK08633         88 VGLTLLIVLAYY----------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLE  145 (1146)
T ss_pred             HHHHHHHHHHHH----------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHH
Confidence            766655544321                1267889999999999999999999999999999988      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 011743          173 FATTLAAMIGVTAIVYVFID  192 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~  192 (478)
                      .+.++|..+||.+++++.+.
T Consensus       146 ~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        146 AFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988764

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.83  E-value=8.7e-19  Score=184.39  Aligned_cols=167  Identities=13%  Similarity=0.172  Sum_probs=143.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      .+++.+..+.+..++..+....+.+.+ .++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            345656666666666666665554444 56678999999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+++.+++..+.                   +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.
T Consensus        95 ~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~  149 (496)
T PRK03893         95 FSVGTLACGFAP-------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFL  149 (496)
T ss_pred             HHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            999988887764                   67888999999999999999999999999999877      89999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA  205 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~  205 (478)
                      ....++|..++|.+.+++.+..+|++.|++..+.
T Consensus       150 ~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        150 ISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            9999999999999999998889999999875443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.83  E-value=5.7e-18  Score=172.79  Aligned_cols=172  Identities=13%  Similarity=0.148  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      +....+..+....+.....+.+|. +.+++|.+..+.++..+.+.++..++.++.|+++|| +||||.+..+.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHH
Confidence            444555666666666655555554 456799999999999999999999999999999999 899999999999999988


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      +++..+.                   +...+++.|+++|++.+...+...+++.|.+|+++      |+++.++.+...+
T Consensus        83 ~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~  137 (392)
T PRK10473         83 LLCSLAE-------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITC  137 (392)
T ss_pred             HHHHHhC-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence            8777653                   56778889999999999989999999999999877      8999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +|..++|.+++.+.+..+|++.|++.++..++..+....
T Consensus       138 i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        138 IIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877789999999887776655554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.82  E-value=6.3e-19  Score=182.78  Aligned_cols=157  Identities=10%  Similarity=0.051  Sum_probs=128.7

Q ss_pred             HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 011743           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (478)
Q Consensus        37 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  116 (478)
                      ...+++++ .|+++.+.+++.+++.++..++.++.|+++|| +|||+.+..+.++.+++.+++......           
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------  114 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA-----------  114 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc-----------
Confidence            34456665 59999999999999999999999999999999 899999999998888887776543210           


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-ccchh
Q 011743          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF-IDQGW  195 (478)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~-~~~~~  195 (478)
                          ..+...+++.|++.|++.|...+.....+.|++|+++      |++++++++...++|..++|.+.+.+. ...+|
T Consensus       115 ----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w  184 (438)
T TIGR00712       115 ----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW  184 (438)
T ss_pred             ----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence                1256677888999999999999988899999999888      999999999999999999988776543 34689


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 011743          196 WLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       196 ~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      |..|++.++..++..+..++.
T Consensus       185 ~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       185 HAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999888776655444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=4.8e-19  Score=174.20  Aligned_cols=180  Identities=11%  Similarity=0.047  Sum_probs=156.7

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhH---HHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHH
Q 011743           10 QKGGFRACTFVFVLSALENMGFIANG---ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL   86 (478)
Q Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~v~---~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~   86 (478)
                      .+.+.|-=+.++...++.-.+||-+.   ....+++.++.++|.+|.|.+.+++.+.+.++-.+.|.++|| .+.|+.+-
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~   98 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMA   98 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeeh
Confidence            34445555666777777777777665   344578888999999999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhh
Q 011743           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (478)
Q Consensus        87 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~  166 (478)
                      +++++.++..+++..++                   +...+.+..++.|..+|+-.|+....++.++++++      ||+
T Consensus        99 ~gLilsai~nil~Gfs~-------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~  153 (448)
T COG2271          99 FGLILSAIVNILFGFSP-------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGT  153 (448)
T ss_pred             HHHHHHHHHHHHHhhhh-------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCc
Confidence            99999999999999875                   78889999999999999999999999999999998      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          167 YFNFYLFATTLAAMIGVTAI--VYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       167 ~~~~~~~~~~~g~~~~p~i~--~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ..++...+-|+|+.+.|.+.  +++..+.+||..|++++++.++..++.+.
T Consensus       154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999  88888889999999999887554444443

>PRK10133 L-fucose transporter; Provisional

Probab=99.82  E-value=1e-17  Score=173.66  Aligned_cols=151  Identities=15%  Similarity=0.058  Sum_probs=122.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      ..+..+.+..+...+........+|.+ ++++|.++.+.++..+.+.++..++.++.|.++|| +||||++..+..++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYAL  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            344555566666666666566666654 89999999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++.....                ..+...++++|+++|+|.|...+..++++.|..|+++      |...++.....
T Consensus       104 ~~~l~~~~~~----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~  161 (438)
T PRK10133        104 GAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTF  161 (438)
T ss_pred             HHHHHHHHHh----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHH
Confidence            9977642211                1277889999999999999999999999998755444      55567788888


Q ss_pred             HHHHHHHHHHHHHhh
Q 011743          175 TTLAAMIGVTAIVYV  189 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l  189 (478)
                      ..+|..++|.+++.+
T Consensus       162 ~~~G~~~g~~~g~~l  176 (438)
T PRK10133        162 NSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888998888887654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.81  E-value=3.5e-18  Score=197.36  Aligned_cols=344  Identities=10%  Similarity=-0.004  Sum_probs=198.6

Q ss_pred             HHHHHHhHHHHHHHcccccCCch-hhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH--HHHHHHHHHHHhh
Q 011743           28 NMGFIANGISMVLYFKNEMHFDI-AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL--EVLSLVMLTIQAY  104 (478)
Q Consensus        28 ~~~~~~v~~~l~~yl~~~lg~~~-~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~--~~i~~~~~~~~~~  104 (478)
                      ++....+.......+.+..+.+. ...++..+++.+...++.+++|+++|| +|||+++......  ...+..+..... 
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~-  105 (1140)
T PRK06814         28 NFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL-  105 (1140)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            33333333333333444444433 446888889999999999999999999 8999986542222  222222222221 


Q ss_pred             cccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 011743          105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT  184 (478)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  184 (478)
                                       .+.+.++++|+++|++.+...|+..+++.|++|+++      |++++++...+.++|.++||.
T Consensus       106 -----------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~  162 (1140)
T PRK06814        106 -----------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTI  162 (1140)
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHH
Confidence                             278889999999999999999999999999999988      999999999999999999999


Q ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhcc
Q 011743          185 AIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERV  264 (478)
Q Consensus       185 i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (478)
                      ++|++....+|++.|+..++..++++++.....+. +..++..+.....                      .++.     
T Consensus       163 l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~-----  214 (1140)
T PRK06814        163 IGGLATISGNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNI----------------------IRST-----  214 (1140)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccch----------------------HHHH-----
Confidence            99999988899999855444444444433332221 1110000000000                      0000     


Q ss_pred             CcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHH-HHHHHHHHHHhHhhcchhhhhhhcccCCC
Q 011743          265 GTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMP-ILASTIIMNTCLAQLQTLSVTQGAYMDPR  343 (478)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (478)
                                    .+.             +     +.+...+.++..+. .++....+..... +.+.+.....+.+  
T Consensus       215 --------------~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~--  259 (1140)
T PRK06814        215 --------------ITL-------------L-----KYAKADKRIWLAILGISWFWLVGAVVLS-QLPLLAKETLGGD--  259 (1140)
T ss_pred             --------------HHH-------------H-----HHHhcCchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHcCCc--
Confidence                          000             0     00000111222221 1111122222222 2223332222222  


Q ss_pred             CCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C
Q 011743          344 LGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQS-P  422 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~  422 (478)
                          ....+.+.....++.+++..+.+++.    ++.       ...+.+..+.++.++..+.+.+...+  ...... -
T Consensus       260 ----~~~~g~~~~~~~~g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~  322 (1140)
T PRK06814        260 ----ENVATLFLAVFSVGVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSS--VPAEPAQL  322 (1140)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccc--cccccccc
Confidence                11234455566677777776666643    221       11223444444444433333221000  000000 0


Q ss_pred             ------CccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhcc
Q 011743          423 ------PKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA  476 (478)
Q Consensus       423 ------~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg  476 (478)
                            ....+.+++.+.+++.|++.+...++..+++.+.+|++++|+++|++++...+|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~  382 (1140)
T PRK06814        323 KSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF  382 (1140)
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence                  001345667778888999999999999999999999999999999999887765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.80  E-value=2e-17  Score=173.47  Aligned_cols=344  Identities=13%  Similarity=0.061  Sum_probs=225.7

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      ...+....++.+++.+....-++-++ .++.-|+...+++..+..+...++.+++|.++|| +.|||+++.+-++.++..
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVA   89 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHH
Confidence            44455566666666654444444343 3556688999999999999999999999999999 899999999998877766


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      ..+.+.....              ..+.+.+++..++.|++.+...|+..+++.|.+|+++      ..++.++.....|
T Consensus        90 ~~L~~l~~~~--------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~n  149 (524)
T PF05977_consen   90 LLLAVLAFFG--------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFN  149 (524)
T ss_pred             HHHHHHHHhC--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHH
Confidence            5555432110              2367888899999999999999999999999999888      8999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhh
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELY  256 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (478)
                      +.-.+||.++|.+....|-.+.|.+.++..++.++.+...+++..++   ..+..+..+-+..                 
T Consensus       150 iar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~-----------------  209 (524)
T PF05977_consen  150 IARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALRE-----------------  209 (524)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHH-----------------
Confidence            99999999999998888999999999888776655544433321111   1110000000000                 


Q ss_pred             hhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhh
Q 011743          257 EINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQ  336 (478)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  336 (478)
                                        ..+|..                        ..+.+...+........+...+..+.+.+..+
T Consensus       210 ------------------G~ryv~------------------------~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~  247 (524)
T PF05977_consen  210 ------------------GLRYVR------------------------SSPPLRSVLLRSFLFNLFASAVWALLPLFARD  247 (524)
T ss_pred             ------------------HHHHHh------------------------cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHH
Confidence                              000110                        01111111111111111111111122233222


Q ss_pred             hcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011743          337 GAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRN  416 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~  416 (478)
                      ..+.+      ...-+.+....+++.++++.+..+     .+|.      ++..+.+..+.++.+++++..++.      
T Consensus       248 ~l~~~------a~~yGll~a~~gvGai~Gal~~~~-----l~~~------~~~~~lv~~~~~~~a~~~~~lal~------  304 (524)
T PF05977_consen  248 VLGGG------ASGYGLLLAAFGVGAILGALLLPR-----LRRR------LSSRRLVLLASLLFALALLLLALS------  304 (524)
T ss_pred             HhCCc------HHHHHHHHHHHHHHHHHHHHHHHH-----hhcc------cCcchhhHHHHHHHHHHHHHHhcc------
Confidence            22222      111234444455555555544333     3332      355566777888888877777665      


Q ss_pred             hccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhcc
Q 011743          417 AFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA  476 (478)
Q Consensus       417 ~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg  476 (478)
                               .+.+...+.+++.|.+........++.+.+.+|+++||++++++.+....+
T Consensus       305 ---------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~  355 (524)
T PF05977_consen  305 ---------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGG  355 (524)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHH
Confidence                     466777788899999999999999999999999999999999998766543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.80  E-value=3e-17  Score=167.10  Aligned_cols=156  Identities=12%  Similarity=-0.058  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchh----HHHHHHHHHHHHHHHHH
Q 011743           24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF----ATCLVFGTLEVLSLVML   99 (478)
Q Consensus        24 ~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~----~~~~~~~~~~~i~~~~~   99 (478)
                      .++-..++..+.++++.|++ ++|.|..++|++.+++.+...++.++.|.++|| +||+    +.+.++..+..   ..+
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~---~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLFA---VAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHHH---HHH
Confidence            33444555667788999985 589999999999999999999999999999999 8984    33332222221   111


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  179 (478)
                      ....                  .+.+.+++.|++.+++.+...|...++..++  +++      |++.++..+...++|.
T Consensus        88 ~~~~------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~  141 (382)
T PRK11128         88 WFGA------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAF  141 (382)
T ss_pred             HHhc------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHH
Confidence            1111                  2678888899999999999999888877765  223      6778888888889999


Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743          180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (478)
Q Consensus       180 ~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~  210 (478)
                      .+||.+++++.+++|||..|++.++..++..
T Consensus       142 ~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        142 VIGSALTGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            9999999999998999999987776544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.80  E-value=1.9e-17  Score=167.64  Aligned_cols=156  Identities=15%  Similarity=0.157  Sum_probs=113.9

Q ss_pred             HHHHHcccccC--CchhhHhHHHHH-----HHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011743           37 SMVLYFKNEMH--FDIAGASNTLTN-----FFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH  109 (478)
Q Consensus        37 ~l~~yl~~~lg--~~~~~~~~~~~~-----~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~  109 (478)
                      +...++.++..  .+.++.+.+.+.     ..+...++.++.|+++|| +||||++..+.++..++.+++..+.+.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~   92 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIG   92 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence            34445555543  344555544433     223334678999999999 8999999999999999988887664210000


Q ss_pred             CCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011743          110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (478)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  189 (478)
                                 ......++++|+++|++.+...+...+++.|.+|+++      |++..++...+..+|..+++.+++.+
T Consensus        93 -----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883        93 -----------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             -----------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0012457889999999999999999999999999888      89999999999999999998877655


Q ss_pred             h--------ccchhHHHHHHHHHHHHHHH
Q 011743          190 F--------IDQGWWLGFLISSVATLIGL  210 (478)
Q Consensus       190 ~--------~~~~~~~~f~i~~~~~~~~~  210 (478)
                      .        +..+||+.|++.++..+++.
T Consensus       156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       156 SYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            3        34689999988776655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.80  E-value=1.3e-17  Score=172.50  Aligned_cols=343  Identities=13%  Similarity=0.053  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc---cchhH-HHHHHHHHHHHHHHH
Q 011743           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFA-TCLVFGTLEVLSLVM   98 (478)
Q Consensus        23 ~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~~~~i~~~~   98 (478)
                      ..+..++.+..+..+++.|+++++|+++.++|.+.++..+...+..|+.|+++||.   +|||| .++++....+++.++
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~   86 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL   86 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence            34556666677778899999999999999999999999999999999999999972   67755 566777788877776


Q ss_pred             HHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 011743           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (478)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  178 (478)
                      +.....   ..          .......+++.+++.+++.+...++..++..|..++++  |   |++..++.....++|
T Consensus        87 ~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---R~~~~~~~~~~~~~g  148 (437)
T TIGR00792        87 LFTTPD---FS----------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR--E---RESLSTFRRFGATLG  148 (437)
T ss_pred             HHhCCC---CC----------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH--H---HHHHHHHHHHHHHHH
Confidence            654421   00          01135666777888899989888888899999875432  1   778888888888888


Q ss_pred             HHHHHHHHHhhh-------ccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 011743          179 AMIGVTAIVYVF-------IDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDN  251 (478)
Q Consensus       179 ~~~~p~i~~~l~-------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (478)
                      ..+++.+.+.+.       +..+|++.+.+.+++.++..+......++.+++++++++                   +  
T Consensus       149 ~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-------------------~--  207 (437)
T TIGR00792       149 GLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE-------------------K--  207 (437)
T ss_pred             HHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-------------------c--
Confidence            777666554443       245899999888877666655544433321110000000                   0  


Q ss_pred             chhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcch
Q 011743          252 PEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQT  331 (478)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~  331 (478)
                                       +      .+..+..+                  .+...|.+...+..................
T Consensus       208 -----------------~------~~~~~~~~------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (437)
T TIGR00792       208 -----------------K------LSLKQIFK------------------ALFKNDQLLILCLAYLFYNLAFNIKNGVQV  246 (437)
T ss_pred             -----------------C------CCHHHHHH------------------HHhCCHHHHHHHHHHHHHHHHHHHHcchhh
Confidence                             0      00000000                  000011121121111111111111111111


Q ss_pred             hhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011743          332 LSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVE  411 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~  411 (478)
                      .+....  .+ +    ....+.+..+..+..++..++..++.+++           ++++.+..|.++.+++++...+..
T Consensus       247 ~~~~~~--~~-~----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----------g~~~~~~~~~~~~~~~~~~~~~~~  308 (437)
T TIGR00792       247 YYFTYV--LG-D----PELFSYMGSIAIVAGLIGVLLFPRLVKKF-----------GRKILFAGGILLMVLGYLIFFFAG  308 (437)
T ss_pred             eeEeee--cC-C----hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHHcc
Confidence            111111  11 0    11112233344566666666666654433           334556777777777766555431


Q ss_pred             HHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCC-------cchhHHHHHHHHHHhhccC
Q 011743          412 VKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAP-------AGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP-------~~~~g~~~g~~~~~~~lg~  477 (478)
                                    .+.+.+....++.+++.+...+..++...+.+|       ++.+|.++|++++...+|+
T Consensus       309 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~  367 (437)
T TIGR00792       309 --------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ  367 (437)
T ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence                          133445566678889999999999999888875       5678999999998877764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=99.79  E-value=1.3e-17  Score=167.86  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=123.1

Q ss_pred             HhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011743           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (478)
Q Consensus        33 ~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  112 (478)
                      .....+.+.+.+++|++..+++++.+.+.++..++.++.|+++|| +||||++.++.++..++.+.. .+.         
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~---------   85 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP---------   85 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc---------
Confidence            333334445678999999999999999999999999999999999 899999999998888777665 332         


Q ss_pred             CCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011743          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (478)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  192 (478)
                                +.+.+++.|++.|+|.+...+..+..+.|.+| ++      |+++.++.....++|..+++.+++.+.+.
T Consensus        86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      56778899999999999988888888888886 45      88999999999999999999998888765


Q ss_pred             c--hhHHHHHHHHHHHHHH
Q 011743          193 Q--GWWLGFLISSVATLIG  209 (478)
Q Consensus       193 ~--~~~~~f~i~~~~~~~~  209 (478)
                      .  +||..|.+.++..++.
T Consensus       149 ~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       149 SGGHWQQALAWWALPALLA  167 (355)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            4  3999888766544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.2e-17  Score=172.49  Aligned_cols=334  Identities=15%  Similarity=0.101  Sum_probs=220.2

Q ss_pred             ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhH
Q 011743           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA  124 (478)
Q Consensus        45 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (478)
                      +++++..+-+++.+.+..+..++++.+|+++|| +|-|+++..+.++.+++.++.+.+..                 .+.
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~-----------------~~~  128 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS-----------------IGF  128 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH-----------------hcc
Confidence            688899999999999999999999999999999 89999999999999999999998862                 355


Q ss_pred             HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHH
Q 011743          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID-QGWWLGFLISS  203 (478)
Q Consensus       125 ~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~-~~~~~~f~i~~  203 (478)
                      +.+++.|+++|++.|...|++..+.+++.|+++      |++..+..+.+..+|.+++-.++|++.+. .||+..|++.+
T Consensus       129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            578899999999999999999999999999988      99999999999999999999999999988 89999999999


Q ss_pred             HHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhh--hhhhhccCcccccCCCCccchhhh
Q 011743          204 VATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYE--INKIERVGTEERIPHTNQFRCLDK  281 (478)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  281 (478)
                      ++.++..+++.+.-.+    .|++++.                   .+++|...  .++.+..     ..+         
T Consensus       203 ~~g~i~~~~w~~~~~d----~P~~h~~-------------------is~~El~~I~~~k~~~~-----~~~---------  245 (466)
T KOG2532|consen  203 IVGLIWFILWFLFYSD----SPSKHPN-------------------ISEKELKYIEKGKSEAH-----VKK---------  245 (466)
T ss_pred             HHHHHHHHHHHHHhcC----CcccCCC-------------------CCHHHHHHHHhcccccc-----cCC---------
Confidence            9888777776654332    2222210                   01111111  1100000     000         


Q ss_pred             hccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCchhHH
Q 011743          282 AAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLF  361 (478)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  361 (478)
                              ..+.||+..-.     ...++....-..+-........++.+.|..+..+.|      ...++.+..++.+.
T Consensus       246 --------~~~vP~~~i~t-----s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~------v~~~G~~salP~l~  306 (466)
T KOG2532|consen  246 --------KPPVPYKAILT-----SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFD------VRETGFLSALPFLA  306 (466)
T ss_pred             --------CCCCCHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC------hhhhhHHHHHHHHH
Confidence                    01345542111     111111111111111112223333445555555666      33678888899999


Q ss_pred             HHHHHHhhhhHHHHHhhhhcCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHH
Q 011743          362 MAILIPIYEFLFVPFARKITGHPAGITQLQRV--GVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFG  439 (478)
Q Consensus       362 ~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g  439 (478)
                      ..+...+.+.+.|++.+|..    .....+|+  .+++...++.++.+++...              ...+..+.+...+
T Consensus       307 ~~~~k~~~g~lsD~l~~~~l----s~t~~rkifn~i~~~~~ai~l~~l~~~~~--------------~~~~~a~~~l~~~  368 (466)
T KOG2532|consen  307 MAIVKFVAGQLSDRLTFRIL----SETTVRKIFNTIAFGGPAVFLLVLAFTSD--------------EHRLLAVILLTIA  368 (466)
T ss_pred             HHHHHHHHHHHHHHHhhccC----chHhHHHHHHhHHHHHHHHHHHeeeecCC--------------CcchHHHHHHHHH
Confidence            99999999999888766621    12444455  4455555555555555421              0112233333333


Q ss_pred             HHHHhhhhhhhhhhhcc-CCcchhHHHHHHHHHHhhccC
Q 011743          440 IADMFTFVGLLEFFYKE-APAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       440 ~ge~~~~p~~~~~~~~~-aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      .+.......+...-... + +++-+..+|+.+....+++
T Consensus       369 ~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  369 IGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAG  406 (466)
T ss_pred             HHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHH
Confidence            33333333333333333 5 4558899999988877653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.78  E-value=3.6e-16  Score=160.65  Aligned_cols=173  Identities=14%  Similarity=0.099  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+.++...+...+.+....+.+ ..+++++|++..+.|++.+.+.++..++.++.|++.|| +||||++..+.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence            4445555555555544333444 45688999999999999999999999999999999999 899999999999999998


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .++..+..                ..+.+.+++.|++.|+|.|...+..++++.+..|+++      |++..++.+...+
T Consensus        83 ~l~~~~~~----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  140 (410)
T TIGR00885        83 FLFWPAAE----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNP  140 (410)
T ss_pred             HHHHHHHh----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHH
Confidence            77654421                2267888999999999999999999999999988776      7788888888999


Q ss_pred             HHHHHHHHHHHhhhc--------------------------cchhHHHHHHHHHHHHHHHHHH
Q 011743          177 LAAMIGVTAIVYVFI--------------------------DQGWWLGFLISSVATLIGLIAL  213 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~--------------------------~~~~~~~f~i~~~~~~~~~~~~  213 (478)
                      +|..++|.+++.+..                          ..+||++|++.+++.++..+++
T Consensus       141 lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       141 FGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998887642                          1369999988777655444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1e-16  Score=158.15  Aligned_cols=351  Identities=11%  Similarity=-0.027  Sum_probs=230.6

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHH
Q 011743           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (478)
Q Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   89 (478)
                      ++..+|.++...+ .+...+.-+.+...+..++++++|+|+.|.+++..+..+...+..++-|.+.|| +|.||+..+++
T Consensus         9 k~~~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~   86 (417)
T COG2223           9 KRIARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSM   86 (417)
T ss_pred             ccchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHH
Confidence            3456676765444 455556667788888899999999999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ++..+-.+.+.++...                .+.+.+++...+.|++ |...+...+.++++||+++      ++.+.+
T Consensus        87 ~l~~IP~~~~~~a~~~----------------~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~AlG  143 (417)
T COG2223          87 LLLLIPCLGLAFAVTY----------------PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGLALG  143 (417)
T ss_pred             HHHHHHHHHHHHHccC----------------CchHHHHHHHHHHhcc-cceehcccccccccCChhh------hhHHHH
Confidence            9999999888887631                2447888889999998 6667788889999999998      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccch---hHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCC
Q 011743          170 FYLFATTLAAMIGVTAIVYVFIDQG---WWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKL  246 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~~~~---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (478)
                      ++. ..|+|..+...++..+....+   |+....+..+.++++.+..++..++.++.++..++...              
T Consensus       144 I~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--------------  208 (417)
T COG2223         144 IAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--------------  208 (417)
T ss_pred             Hhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--------------
Confidence            999 899999999999998888888   99999888888888777777665543332221111000              


Q ss_pred             CCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhH
Q 011743          247 SLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCL  326 (478)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~  326 (478)
                                +                    .++                     .+...++.|.+..+......-.+.+
T Consensus       209 ----------~--------------------~~~---------------------~v~~~~~~W~lsllY~~tFG~Fvgf  237 (417)
T COG2223         209 ----------A--------------------QLK---------------------AVFSNKDTWLLSLLYFATFGGFVGF  237 (417)
T ss_pred             ----------h--------------------HHH---------------------HHhcCcchHHHHHHHHHHHHHHHHH
Confidence                      0                    000                     0111222333333333333323333


Q ss_pred             hhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 011743          327 AQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTI  406 (478)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~  406 (478)
                      ..+.+.+.......+      ....+.+....++...+.-|+-+.+.||+           +..+.....+..++++...
T Consensus       238 s~~l~~~~~~~fg~~------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-----------Gg~rv~~~~f~~~~~~~~~  300 (417)
T COG2223         238 SAYLPMYLVTQFGLS------PVTAGLIAFLFPLIGALARPLGGWLSDRI-----------GGRRVTLAVFVGMALAAAL  300 (417)
T ss_pred             HHHHHHHHHHhcCCC------hhhHHHHHHHHHHHHHHHHhccchhhhhc-----------cchhHHHHHHHHHHHHHHH
Confidence            333332222212222      22233455555555556666666655544           4455566666666666655


Q ss_pred             HHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          407 AGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      .......      ++  ...+.+.....++.+.+..++-+...+..+..+.|+ +-|.+.|+-....++|+
T Consensus       301 l~~~~~~------~~--~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGG  362 (417)
T COG2223         301 LSLFLTG------FG--HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGG  362 (417)
T ss_pred             HHccccc------cc--cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccc
Confidence            5544211      00  012334334444444444444455566666666655 68888898888888875

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.78  E-value=2.5e-16  Score=161.75  Aligned_cols=179  Identities=13%  Similarity=-0.048  Sum_probs=136.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHccc-ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      |.++...+ .+...+..+.+...+...+.+ ++|++..|.+++.+++.+...++.++.|++.|| +|.|+++.++.++..
T Consensus        34 r~l~~s~~-~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVS-CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence            54554433 455555555566666666655 899999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      +..+++..+....              .++...+++.|++.|++ |...+.....+++++|+++      |+++.++...
T Consensus       112 i~~~~~~~a~~~~--------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g  170 (462)
T PRK15034        112 IPCVWLGIAVQNP--------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGG  170 (462)
T ss_pred             HHHHHHHHHHccc--------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHH
Confidence            9888887651000              12788999999999998 7788889999999999888      9999999976


Q ss_pred             HHHHHHHHHHHHHHhhh-----c-------------cchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          174 ATTLAAMIGVTAIVYVF-----I-------------DQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~-----~-------------~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ..|+|..+++.++..+.     +             ..+|+..+++..+..+++.++.++.
T Consensus       171 ~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        171 LGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67777766655554322     1             3457777777777766666555554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.77  E-value=2.1e-16  Score=163.43  Aligned_cols=393  Identities=12%  Similarity=0.031  Sum_probs=234.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhh---ccchhHHHHHH-HHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFATCLVF-GTL   91 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Gr~~~~~~~-~~~   91 (478)
                      .+..+....+.-++++-...++++.|+ +++|++..+++.+..+..+...+.+|+.|+++||   .+||||.++.+ .+.
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            355566667777777776777888776 6799999999999999999999999999999993   38999998876 455


Q ss_pred             HHHHHHHHHHHhhccc-CCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           92 EVLSLVMLTIQAYSKS-LHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      .+++..+++.+..... +.+..-+.+   +.......+++..+..++....++...++++|.+|+++++    ++.++++
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~---~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~  156 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKT---KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAY  156 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHH
Confidence            5566666655432110 000000000   0112244455555666788888888999999999987622    4679999


Q ss_pred             HHHHHHHHHHHHHHHHHhh--hcc-------------chhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHH
Q 011743          171 YLFATTLAAMIGVTAIVYV--FID-------------QGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQ  235 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l--~~~-------------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (478)
                      .....++|..+|+.++++.  .+.             .+.+..|++.+++.+++.++..+..++.+..++++.+.     
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~-----  231 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN-----  231 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh-----
Confidence            9999999999999988864  111             16789999988888887777766544422111111000     


Q ss_pred             HHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 011743          236 VIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPI  315 (478)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  315 (478)
                                       ++..+.+            +.+.                ...++.+-+...+--|.+.+.+..
T Consensus       232 -----------------~~~~~~~------------~~~~----------------~~~~~~i~~~~~~mP~~m~~l~~v  266 (477)
T TIGR01301       232 -----------------SEAAPPS------------KHGE----------------EAFFGELFGAFKYLPRPVWILLLV  266 (477)
T ss_pred             -----------------hhccccc------------ccch----------------hhhHHHHHHHHHHCCHHHHHHHHH
Confidence                             0000000            0000                000000000001112344556666


Q ss_pred             HHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCC-----CccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChh
Q 011743          316 LASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTP-----SIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQL  390 (478)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~  390 (478)
                      .++....|..+..+.|.++-+...-..+-.+-....+     +-...+.+...    +...++.++.||.       +.+
T Consensus       267 qffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~-------g~~  335 (477)
T TIGR01301       267 TCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGW-------GAG  335 (477)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-------ccc
Confidence            6777777777777777665543221111000000000     11112222222    3334444455553       322


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHhhcc---CCCC--ccch-HHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc--ch
Q 011743          391 QRV-GVGLVLSVISMTIAGFVEVKRRNAFN---QSPP--KQIS-LFWLSFQYCIFGIADMFTFVGLLEFFYKEAPA--GM  461 (478)
Q Consensus       391 ~~i-~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~-~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~--~~  461 (478)
                      ++. .++.++.++++....++.....+..+   ..+.  .+.. .+.....+.+.|+.-.......++++.+..|+  +.
T Consensus       336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~  415 (477)
T TIGR01301       336 KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAG  415 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCC
Confidence            333 78888888888888776432111100   0000  0112 36677888999999999999999999999995  55


Q ss_pred             hHHHHHHHHHHhhccC
Q 011743          462 RTLLLHLHFCHCHLAT  477 (478)
Q Consensus       462 ~g~~~g~~~~~~~lg~  477 (478)
                      +|.+||+.|++..+.+
T Consensus       416 ~G~~mgilN~~I~lpQ  431 (477)
T TIGR01301       416 QGLSMGVLNLAIVIPQ  431 (477)
T ss_pred             CcchhhHHHHHHHHHH
Confidence            6999999999876543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.77  E-value=2.2e-16  Score=166.98  Aligned_cols=353  Identities=14%  Similarity=0.046  Sum_probs=217.8

Q ss_pred             hHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHH
Q 011743           52 GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSL  131 (478)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (478)
                      +.+++.++..+++.++.++.|.++|+ +|||++++++.+++.+|.+++..+.                   +..+++++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~-------------------~~~~l~~GR  149 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP-------------------SWYQLIVGR  149 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHH
Confidence            45899999999999999999999999 8999999999999999999999886                   889999999


Q ss_pred             HHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHH
Q 011743          132 YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID-QGWWLGFLISSVATLIGL  210 (478)
Q Consensus       132 ~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~-~~~~~~f~i~~~~~~~~~  210 (478)
                      ++.|+|.|+....++.+++|..|++.      |+...+......++|..++..++....+. .+||..+.+..+..++..
T Consensus       150 ~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~  223 (513)
T KOG0254|consen  150 ILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILA  223 (513)
T ss_pred             HHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888      99999999999999999996555444332 489988888777666555


Q ss_pred             HHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCC
Q 011743          211 IALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDST  290 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (478)
                      +. .+..++.++.-.+.....+..+.+.   +-+..+..+.+.+..+...+...+   ...+...               
T Consensus       224 ~~-~~~~pesp~~L~~~g~~~~a~~~l~---~l~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------  281 (513)
T KOG0254|consen  224 LG-MLFLPESPRWLIEKGRLEEAKRSLK---RLRGLSPEDVEVELELLKIKLLVE---AEVAEGK---------------  281 (513)
T ss_pred             HH-HHhCCCChHHHHHcCChHHHHHHHH---HHhCCCCcchHHHHHHHHHHHHHh---hhccccc---------------
Confidence            55 3333321111011111122222211   111111111111111100000000   0000000               


Q ss_pred             CCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhh
Q 011743          291 AAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYE  370 (478)
Q Consensus       291 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  370 (478)
                        ..|+++..  ...+|+....+.+..+++........+++....+..+.+.+       ......+..+..++...+..
T Consensus       282 --~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~-------~~~~~~~~~~v~~~~t~~~~  350 (513)
T KOG0254|consen  282 --ASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD-------TFLASIILGVVNFLGTLVAT  350 (513)
T ss_pred             --ccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc-------hHHHHHHHHHHHHHHHHHHH
Confidence              01111111  01234444445555555555555544455444444433322       12223333344444444445


Q ss_pred             hHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhh
Q 011743          371 FLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLL  450 (478)
Q Consensus       371 ~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~  450 (478)
                      .+.|+++||           ..++.|...+++++++.+.......+.....  .......++..++........+.|..+
T Consensus       351 ~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~f~~g~g~v~w  417 (513)
T KOG0254|consen  351 YLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYPNSS--KGAGWLAIVFLCLFIFSFAIGWGPVPW  417 (513)
T ss_pred             HHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCCCcc--cchhHHHHHHHHHHHHHHhcccccchh
Confidence            666666555           4578888888888888877644322111000  013344455555666666777788888


Q ss_pred             hhhhccCCcchhHHHHHHHHHHhhcc
Q 011743          451 EFFYKEAPAGMRTLLLHLHFCHCHLA  476 (478)
Q Consensus       451 ~~~~~~aP~~~~g~~~g~~~~~~~lg  476 (478)
                      .+..+..|.+.|+++.++....+.+.
T Consensus       418 ~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  418 VIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             hhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            89999999999999999888877654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.75  E-value=1.6e-15  Score=159.53  Aligned_cols=174  Identities=8%  Similarity=0.085  Sum_probs=136.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc-----chhHH-HHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-----SRFAT-CLVFG   89 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Gr~~~-~~~~~   89 (478)
                      ..+.++...+......+.....++.|+.+ .|.+..+.+..... ... +++.++.|.++|| +     ||||. +..+.
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~   88 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLATQ   88 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHc-ccccCCCCchHHHHHHH
Confidence            35556666677777777777888888664 59999999986332 222 3688999999999 7     99986 55666


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      +..+++...+.....                ..+.+.+.+.+++.+++.+...+...++..|++|+++      |+++.+
T Consensus        89 i~~~~~~~~~a~~~~----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~  146 (491)
T PRK11010         89 LLLLVAIAAMGFLEP----------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAA  146 (491)
T ss_pred             HHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHH
Confidence            667677666655421                2367788888999999999999999999999999887      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHh
Q 011743          170 FYLFATTLAAMIGVTAIVYVFI-DQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~-~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +...+.++|..+++.+++++.+ ..|||..|++.++..++..+..+.
T Consensus       147 i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        147 ISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988 469999999988776666554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.75  E-value=3.5e-16  Score=161.21  Aligned_cols=339  Identities=12%  Similarity=0.067  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccch-hHHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR-FATCLVFGTLEVLSLVM   98 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~i~~~~   98 (478)
                      +.+..++...++-...++++.|+.+++|++..+.|++.+++.++..+++++.|.++|| +|| |+++.++.++.+++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHH
Confidence            4455556666666666999999999999999999999999999999999999999999 755 77888888777777666


Q ss_pred             HHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCC--------CCCChhhhhhhhhHHHH
Q 011743           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQF--------DENDPKGAKALASYFNF  170 (478)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~--------~~~~~~~~~~r~~~~~~  170 (478)
                      ....+                   +.+.+++.|++.+++.+...+...+...+..        ....      |.+.++ 
T Consensus        86 ~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~G-  139 (418)
T TIGR00889        86 AAQVT-------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVMG-  139 (418)
T ss_pred             HHHhc-------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeeeh-
Confidence            65543                   5666777888888877666665544432221        1111      344443 


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPD  250 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (478)
                           .+|..++|.+++.+.....| .+|++.++..++..+..+.. ++.++  +++++..+               .  
T Consensus       140 -----~lG~~ig~~l~g~l~~~~~~-~~f~~~~~~~~~~~~~~~~~-~e~~~--~~~~~~~~---------------~--  193 (418)
T TIGR00889       140 -----TIGFIAAMWAVSLLDIELSN-IQLYITAGSSALLGVFALTL-PDIPV--AKSTAKMS---------------I--  193 (418)
T ss_pred             -----hHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHHhcC-CCCCC--CccccccC---------------H--
Confidence                 47888899988887432223 45666666555444433222 21110  00000000               0  


Q ss_pred             CchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 011743          251 NPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQ  330 (478)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~  330 (478)
                            .+.              ...++.+   .                  .++++.....+..++........+ +..
T Consensus       194 ------~~~--------------~~~~~~~---~------------------~k~~~~~~~~~~~~~~~~~~~~~~-~~~  231 (418)
T TIGR00889       194 ------KVM--------------LGLDAFI---L------------------FKNKRMAIFFFFSMLLGAPLQITN-IFG  231 (418)
T ss_pred             ------HHH--------------hhhhHHH---H------------------hcCCCeeeHHHHHHHHHhHHHHHH-HhH
Confidence                  000              0000000   0                  000110111111111111111111 111


Q ss_pred             hhhhhhhcccCCCCC-Cc-ccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 011743          331 TLSVTQGAYMDPRLG-SI-KVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAG  408 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~  408 (478)
                      +.+..+ .+.+.... ++ ....+....+..+..++...+.+++.+++           ++++.+.++.++.++++....
T Consensus       232 ~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----------g~r~~l~~~~~~~~v~~~l~~  299 (418)
T TIGR00889       232 NGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-----------GIKKVMLLSLVAWALRFGFFA  299 (418)
T ss_pred             HHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHH
Confidence            222211 11111100 00 01113334444455555555555544433           445567788877777765554


Q ss_pred             HHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHH-HHhhcc
Q 011743          409 FVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHF-CHCHLA  476 (478)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~-~~~~lg  476 (478)
                      .....           ..+.+.+....++.+++++...+....++.+..|++.||+++|+.+ ...++|
T Consensus       300 ~~~~~-----------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg  357 (418)
T TIGR00889       300 YGDPE-----------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFG  357 (418)
T ss_pred             HcCcc-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH
Confidence            42100           0123445567788999999999999999999999999999999997 455555

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.74  E-value=4e-16  Score=159.79  Aligned_cols=353  Identities=10%  Similarity=0.052  Sum_probs=209.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHH
Q 011743           54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYL  133 (478)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  133 (478)
                      +.+++++.++.+++..++|+++|| +|||+.++++.++..++.+++..+..                ..+..+++++|++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~----------------~~~~e~li~GR~i  125 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKS----------------APSFEMLILGRLI  125 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHH
Confidence            678899999999999999999999 89999999999999998888877653                2378999999999


Q ss_pred             HHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--hhhccchhHHHHHHHHHHHHHHHH
Q 011743          134 YSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIV--YVFIDQGWWLGFLISSVATLIGLI  211 (478)
Q Consensus       134 ~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~--~l~~~~~~~~~f~i~~~~~~~~~~  211 (478)
                      .|+..|......+-++.|..|++.      ||..-.+...+.++|..++..++.  .+.+...|++.+.+..+..++.++
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998      999999999999999999966653  444556799999988887776666


Q ss_pred             HHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCC
Q 011743          212 ALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTA  291 (478)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (478)
                      ...++.+-.+.--.+.++.++..+.+.. ++.+..    ++++.++++++ ...+  +.+..+..++.|.-         
T Consensus       200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~-y~G~~~----~~~~~e~~~~e-~~~~--~~~~~~~~sl~~~~---------  262 (485)
T KOG0569|consen  200 LLPFLPESPKYLLIKKGDEEEARKALKF-YRGKED----VEAEIEEMLRE-IEEE--ELEKKKQISLRQLL---------  262 (485)
T ss_pred             HHhcCCCCcchHHHHcCCHHHHHHHHHH-HhCCCc----chhHHHHHHHH-HHHh--ccccccCCcHHHHh---------
Confidence            6655433211110111222222222211 111111    01111111100 0000  00001111122210         


Q ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhh
Q 011743          292 AAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEF  371 (478)
Q Consensus       292 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  371 (478)
                             .++  ..|+.+...+.+...+..-.......++.......++..+      ...+.........++...+...
T Consensus       263 -------~~~--~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~------~a~~an~~~g~v~~~~t~~~~~  327 (485)
T KOG0569|consen  263 -------KNP--TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE------EAQYANLGIGIVNLLSTLVSPF  327 (485)
T ss_pred             -------cCc--chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                   000  1122233333344444443444333444444443333311      1122222233444444444445


Q ss_pred             HHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhh
Q 011743          372 LFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLE  451 (478)
Q Consensus       372 ~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~  451 (478)
                      ++++.+||           ..+++++.++.+..+.........+...+.     .++..++..+......+....|..+-
T Consensus       328 lid~~gRR-----------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~y~~i~~~~~~~~~f~~G~gpi~~f  391 (485)
T KOG0569|consen  328 LIDRLGRR-----------PLLLISLSLMAVALLLMSIALFLSNSFGSW-----LSYLCIAAIFLFIISFAIGPGPIPWF  391 (485)
T ss_pred             HHHhcCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHhhhcCCCchhHH
Confidence            55555555           446777777666666666554432221100     11222233333344455666899999


Q ss_pred             hhhccCCcchhHHHHHHHHHHhhccC
Q 011743          452 FFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       452 ~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      +.+|..|.+.|..++++..+.+.+.+
T Consensus       392 i~aELf~~~~R~aa~s~~~~~~w~~~  417 (485)
T KOG0569|consen  392 IGAELFPQSARSAAQSVATAVNWLSN  417 (485)
T ss_pred             HHHHhCCccchHHHHHHHHHHHHHHH
Confidence            99999999999999999888877654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.71  E-value=6.8e-15  Score=150.79  Aligned_cols=162  Identities=10%  Similarity=0.048  Sum_probs=127.6

Q ss_pred             HHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc-----chhH-HHHHHHHHHHHHHHH
Q 011743           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-----SRFA-TCLVFGTLEVLSLVM   98 (478)
Q Consensus        25 ~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Gr~~-~~~~~~~~~~i~~~~   98 (478)
                      +.....+.-...-+|.|+++ .|++.++.|++..+...  .+..++.|+++|| +     |||| .+.++.++.+++...
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHH
Confidence            33344444455678888875 59999999999777665  6999999999999 7     8876 677778888777776


Q ss_pred             HHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 011743           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (478)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  178 (478)
                      +.+...                ..+.+.+++..++.++..+...+...+++.|++|+++      |+++.++...+.++|
T Consensus        85 l~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g  142 (402)
T PRK11902         85 MAFCPP----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLA  142 (402)
T ss_pred             HHhcCc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHH
Confidence            665421                1256667777777888888899999999999999888      899999999999999


Q ss_pred             HHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHH
Q 011743          179 AMIGVTAIVYVFID-QGWWLGFLISSVATLIGLIA  212 (478)
Q Consensus       179 ~~~~p~i~~~l~~~-~~~~~~f~i~~~~~~~~~~~  212 (478)
                      ..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       143 ~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        143 MLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99999999888775 59999999988776555443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.71  E-value=2.8e-15  Score=151.86  Aligned_cols=155  Identities=11%  Similarity=0.030  Sum_probs=135.9

Q ss_pred             HHHHHHHcccccCCchhh-HhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 011743           35 GISMVLYFKNEMHFDIAG-ASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (478)
Q Consensus        35 ~~~l~~yl~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  113 (478)
                      .++...|+.+++|++..+ .|.+.++++.++.++.+++|+++|| +|.|+++.++++.+.+..+++.++.          
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~----------  113 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT----------  113 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH----------
Confidence            356777999999999999 9999999999999999999999999 8999999999999999999998875          


Q ss_pred             CCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011743          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ  193 (478)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  193 (478)
                               +...+.+.|++.|++.|... +...++..++|+++      |+++.++...+.++|.++++.+++++ ..+
T Consensus       114 ---------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~  176 (511)
T TIGR00806       114 ---------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTL  176 (511)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence                     78899999999999999999 99999999999887      99999999999999999999999985 457


Q ss_pred             hhHHHH---HHHHHHHHHHHHHHHhcC
Q 011743          194 GWWLGF---LISSVATLIGLIALAIGK  217 (478)
Q Consensus       194 ~~~~~f---~i~~~~~~~~~~~~~~~~  217 (478)
                      ||+.-+   +++.....+++++.++..
T Consensus       177 gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       177 GWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            887644   444555556666655543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09848 glucuronide transporter; Provisional

Probab=99.69  E-value=7e-15  Score=152.95  Aligned_cols=157  Identities=13%  Similarity=0.035  Sum_probs=107.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc---cchhHHH-HHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATC-LVFGTL   91 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~-~~~~~~   91 (478)
                      ..+.-....+.++..+..+.++++.|+++.+|+++.++|.+..+..+...+..|+.|+++||.   +||||.. .++.+.
T Consensus         9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~   88 (448)
T PRK09848          9 TIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP   88 (448)
T ss_pred             HHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence            344444577778888887888999999999999999999999999999999999999999992   3777755 555555


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      ..+..+++.....  .     +.     ........++...+.+++.+...++..++..+..++.+  |   |.+..++.
T Consensus        89 ~~~~~~~~~~~~~--~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~~~~~r  151 (448)
T PRK09848         89 LMIFSVLVFWVPT--D-----WS-----HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RARLGAAR  151 (448)
T ss_pred             HHHHHHHHHhCcC--C-----CC-----cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHHHHHHH
Confidence            5554444322110  0     00     01134445556677888899999888888887776533  2   45555444


Q ss_pred             HH-----HHHHHHHHHHHHHHhh
Q 011743          172 LF-----ATTLAAMIGVTAIVYV  189 (478)
Q Consensus       172 ~~-----~~~~g~~~~p~i~~~l  189 (478)
                      ..     ..+++..++|.+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        152 GIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            33     3446666777766544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.66  E-value=5.7e-14  Score=147.57  Aligned_cols=149  Identities=15%  Similarity=0.104  Sum_probs=118.3

Q ss_pred             HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 011743           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (478)
Q Consensus        37 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  116 (478)
                      ....++.+++|-+ ....|+.....+...+..++.|.++|. ||||..++.+.++..+|.+.++-+.             
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~-------------  129 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ-------------  129 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence            3345788888854 566788899999999999999999999 9999999999999999999998765             


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 011743          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWW  196 (478)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~  196 (478)
                            +...++.+..+.|+|.|.... ....++|..|.+.      |..+..+.....-+....+|.++..+..+.+||
T Consensus       130 ------~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR  196 (599)
T PF06609_consen  130 ------NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWR  196 (599)
T ss_pred             ------cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence                  788899999999999777654 4556899999776      666666555544444456666666665566899


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011743          197 LGFLISSVATLIGLIAL  213 (478)
Q Consensus       197 ~~f~i~~~~~~~~~~~~  213 (478)
                      |.|++..+...++++..
T Consensus       197 w~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLI  213 (599)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999988776665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.66  E-value=1.5e-14  Score=151.64  Aligned_cols=177  Identities=8%  Similarity=-0.032  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhh----hccch-hHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD----TYLSR-FATCLVFGTLEVL   94 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr-~~~~~~~~~~~~i   94 (478)
                      --+..+..++.+..+.++++.|+++.+|+++.++|.+..+..+...+..|+.|+++|    | +|| |+.++++.+..++
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i   89 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSV   89 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHH
Confidence            345667777888888899999999999999999999999999999999999999999    5 699 4555667777777


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++....   .     +     +......++++...+..++......+..++.+|+.++.+  |   |.+.+++.+..
T Consensus        90 ~~~llf~~p---~-----~-----~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~--e---R~~l~~~~~~~  151 (473)
T PRK10429         90 VLFLLFSAH---L-----F-----EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR--E---REQLVPYPRFF  151 (473)
T ss_pred             HHHHHHcCC---C-----C-----CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH--H---HHHHHHHHHHH
Confidence            766664321   0     0     001234556666677788888889999999999985433  1   77888887777


Q ss_pred             HHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHHHHHHHHHHHh
Q 011743          175 TTLAAMIGVTAIVYVFI-------DQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~-------~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      .++|+.+.+.+...+.+       ..+|+....+.+++.+++.+..+.
T Consensus       152 ~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~  199 (473)
T PRK10429        152 ASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR  199 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            77776666554433211       235666666665555544444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.65  E-value=6.5e-15  Score=158.84  Aligned_cols=196  Identities=13%  Similarity=0.154  Sum_probs=150.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      +|.+.+.+....+....+.++.......++++++++..+.|++.+.+.++..++.++.|+++|| +||||.+.+++++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHH
Confidence            4444444444555555556666667778889999999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHHhhcccCC----------------CCCCC-C-C----------cccc----chhHHHHHHHHHHHHhccccc
Q 011743           94 LSLVMLTIQAYSKSLH----------------PPDCG-K-S----------SCLK----GAIAAYFYGSLYLYSLGCGGN  141 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~----------------~~~~~-~-~----------~~~~----~~~~~~~~~~~~l~gig~g~~  141 (478)
                      +|.+++++.+...--+                +..+. . +          .+.+    ...+..++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            9999988764211000                00010 0 0          0000    013567789999999999999


Q ss_pred             cccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----------------------hhHHHH
Q 011743          142 RGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ----------------------GWWLGF  199 (478)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~----------------------~~~~~f  199 (478)
                      .+...+++.|.+|+++      |+...++++.+..+|..+|+.+++++.+.+                      +||..|
T Consensus       190 ~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F  263 (633)
T TIGR00805       190 FPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF  263 (633)
T ss_pred             hhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence            9999999999999988      999999999999999999999999886532                      388889


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 011743          200 LISSVATLIGLIALAIG  216 (478)
Q Consensus       200 ~i~~~~~~~~~~~~~~~  216 (478)
                      ++.+++.++..+.+++.
T Consensus       264 li~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       264 LICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            98887776655544444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.65  E-value=4.7e-15  Score=153.31  Aligned_cols=343  Identities=10%  Similarity=0.044  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhh----hccchhHHHH-HHHHHHHHHHHH
Q 011743           24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD----TYLSRFATCL-VFGTLEVLSLVM   98 (478)
Q Consensus        24 ~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr~~~~~-~~~~~~~i~~~~   98 (478)
                      .+..++.+.....++..|+++.+|+++..+|.+..+..+...+..|+.|.++|    | +||||-.+ +|.+..+++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHH
Confidence            35555555556678899999999999999999999999999999999999999    7 89777655 567778887777


Q ss_pred             HHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 011743           99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (478)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  178 (478)
                      +....  |.    ++     +......++.+..++..++......+..++..|..+++++     |.+..++......+|
T Consensus        89 lf~~~--p~----~~-----~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g  152 (428)
T PF13347_consen   89 LFSPP--PA----GL-----SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIG  152 (428)
T ss_pred             hhccc--cc----hh-----hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHH
Confidence            76441  00    00     0012345567777778999999999999999999986542     778888887777777


Q ss_pred             HHHHHHHHHhhhc----c---chhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 011743          179 AMIGVTAIVYVFI----D---QGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDN  251 (478)
Q Consensus       179 ~~~~p~i~~~l~~----~---~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (478)
                      ..+...+.+.+.+    .   .+|++...+.+++.++..++.....|+.+++.+++++                      
T Consensus       153 ~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~----------------------  210 (428)
T PF13347_consen  153 SLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK----------------------  210 (428)
T ss_pred             HHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc----------------------
Confidence            7655555554432    1   1688888877777766666655554430000000000                      


Q ss_pred             chhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcch
Q 011743          252 PEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQT  331 (478)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~  331 (478)
                                       ..      ++.+..+                 +..+++ .+...+.........+........
T Consensus       211 -----------------~~------~~~~~~~-----------------~~~~nr-~~~~l~~~~~~~~~~~~~~~~~~~  249 (428)
T PF13347_consen  211 -----------------KI------SLRDSLR-----------------SLFRNR-PFRILLLAFFLQWLAFALMNTFLP  249 (428)
T ss_pred             -----------------cc------ccccchh-----------------hhcccc-hHHHHHHHHHHHHhhhhhhhhHHH
Confidence                             00      0000000                 000111 111112222222121222111122


Q ss_pred             hhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011743          332 LSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVE  411 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~  411 (478)
                      .+.....+.+ .      ..+.+.....+..++..|+..++.+++           +.++.+..|.++.+++.++..+..
T Consensus       250 y~~~~vl~~~-~------~~~~~~~~~~~~~~v~~~~~~~l~~r~-----------gk~~~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  250 YYFTYVLGNE-G------LISIFMLIFFVASIVGSPLWGRLSKRF-----------GKKKVYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             HHHHHHhcCc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHc-----------cceeehhhhHHHHHHHHHHHHHHH
Confidence            2222212211 1      123333445566666777666644433           334557888888888888777763


Q ss_pred             HHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCc-------chhHHHHHHHHHHhhccC
Q 011743          412 VKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPA-------GMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~-------~~~g~~~g~~~~~~~lg~  477 (478)
                      .             .+.+++.+..++.+++.+...+..++..++..+.       +..|...|++++...+|.
T Consensus       312 ~-------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~  371 (428)
T PF13347_consen  312 P-------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ  371 (428)
T ss_pred             h-------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence            1             3678888899999999999999999999998873       457899999988877654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.64  E-value=6.9e-14  Score=148.32  Aligned_cols=141  Identities=16%  Similarity=0.041  Sum_probs=127.2

Q ss_pred             cccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchh
Q 011743           44 NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI  123 (478)
Q Consensus        44 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (478)
                      +..+.+........+++.++..+++++.|.++|| +|||++++.++++.+++.+..+++.                   +
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------~  170 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------N  170 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------c
Confidence            5667788889999999999999999999999999 9999999999999999998888875                   8


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 011743          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISS  203 (478)
Q Consensus       124 ~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~  203 (478)
                      .+.+++.|++.|++.++...+...+++|.+++++      |+.+.++ ......++.++|.+++++..  +||+.+++..
T Consensus       171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~  241 (521)
T KOG0255|consen  171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS  241 (521)
T ss_pred             HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence            9999999999999999999999999999999998      9999999 77788888889988888876  8999999988


Q ss_pred             HHHHHHHHHH
Q 011743          204 VATLIGLIAL  213 (478)
Q Consensus       204 ~~~~~~~~~~  213 (478)
                      ...++.++..
T Consensus       242 ~~~~~~~~~~  251 (521)
T KOG0255|consen  242 IPSGLFLLLW  251 (521)
T ss_pred             HHHHHHHHHH
Confidence            7776665553

>PRK09669 putative symporter YagG; Provisional

Probab=99.63  E-value=4.1e-14  Score=147.06  Aligned_cols=181  Identities=9%  Similarity=0.025  Sum_probs=127.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc---cchh-HHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRF-ATCLVFGTLE   92 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~-~~~~~~~~~~   92 (478)
                      .+.--+..+..++.+..+..+++.|+++++|+++.++|.+..+..+...+..|+.|+++||.   +||| +.++.+.+..
T Consensus        11 ~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~   90 (444)
T PRK09669         11 KIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF   90 (444)
T ss_pred             HHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH
Confidence            33334556677777777788999999999999999999999999999999999999999993   5674 4555676777


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      +++.+++....   .     ++     ......++++...+.+++......+..++.+|+.++++  |   |.+..++..
T Consensus        91 ~i~~~l~f~~p---~-----~~-----~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--e---R~~l~~~r~  152 (444)
T PRK09669         91 GVVCLLTFYTP---D-----FG-----ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--E---RHSLQSWRF  152 (444)
T ss_pred             HHHHHHHHhCC---C-----CC-----cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--H---HHHHHHHHH
Confidence            77765554321   1     10     01245666666667777777788888899999886533  1   677888888


Q ss_pred             HHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHHHHHHHHHHHh
Q 011743          173 FATTLAAMIGVTAIVYVFI-------DQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~-------~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ...++|..+++.+...+..       ..+|+..+.+.+++..+..++.++
T Consensus       153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            7888887777665433322       246777777776665555444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.6e-14  Score=140.87  Aligned_cols=149  Identities=13%  Similarity=0.036  Sum_probs=136.0

Q ss_pred             ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhH
Q 011743           45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA  124 (478)
Q Consensus        45 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (478)
                      .++-.+.+.|++..++.+...+..|+.|.+.|| +|+|-.+++|+++...+.+++++..                   +.
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~-------------------sy  159 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN-------------------SY  159 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc-------------------hh
Confidence            455677889999999999999999999999999 9999999999999999999999875                   77


Q ss_pred             HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 011743          125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSV  204 (478)
Q Consensus       125 ~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~  204 (478)
                      ++++++|.++|+|.+....+..++++|.||+++.     |++++|..-..+.+|-.+||..+|.+-+..|++.+|++.+.
T Consensus       160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~  234 (464)
T KOG3764|consen  160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAI  234 (464)
T ss_pred             HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHH
Confidence            8999999999999999999999999999998762     89999999999999999999999999998999999999999


Q ss_pred             HHHHHHHHHHhcCc
Q 011743          205 ATLIGLIALAIGKP  218 (478)
Q Consensus       205 ~~~~~~~~~~~~~~  218 (478)
                      +.++...+-++..+
T Consensus       235 v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  235 VLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHHHHheeC
Confidence            88877776666544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.59  E-value=1e-12  Score=134.10  Aligned_cols=177  Identities=15%  Similarity=0.059  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHH--HHHHHHHHHHHhhHH-HHHhhhccchhHHHHHHHHHH-
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNT--LTNFFGSTFLLCLVG-GFISDTYLSRFATCLVFGTLE-   92 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Gr~~~~~~~~~~~-   92 (478)
                      ...++...+.....+..+.+.+|.|++ +.|+|..+.|..  .....+...+..|+. ++.+|| +||||..++.+.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence            344555566666666666788888886 569999999997  466677777777777 668999 89999976665332 


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .+....+....  +.             .....++.....+.++..+...+...++..|..++++      ++...+...
T Consensus        81 ~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~  139 (390)
T TIGR02718        81 SACLASLALVG--PD-------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQI  139 (390)
T ss_pred             HHHHHHHHcCC--cc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHH
Confidence            21222222110  00             0122333444455556666666666667667665544      666777777


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .+..+|..+|+.+.+++.+..|||..|++.++..++..+..+..
T Consensus       140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            77789999999888899888999999999888776655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.59  E-value=8.5e-13  Score=129.76  Aligned_cols=137  Identities=16%  Similarity=0.120  Sum_probs=120.6

Q ss_pred             HHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 011743           32 IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP  111 (478)
Q Consensus        32 ~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  111 (478)
                      ....-.+.+.+++.++++..+++.+..++..+..+..+..|++.+| +|+|+.++.|+.++++|..++.=++.       
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~-------  100 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS-------  100 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence            4456677788899999999999999999999999999999999999 89999999999999999988753332       


Q ss_pred             CCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011743          112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  191 (478)
                               ..+...++++.++.+.|.+..+.+.+++++...++++      -.+-+++......+|+.++|.+++++..
T Consensus       101 ---------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         101 ---------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             ---------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                     3478999999999999999999999999999999876      4556677778889999999999987765

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.57  E-value=2.3e-13  Score=132.17  Aligned_cols=118  Identities=17%  Similarity=0.039  Sum_probs=104.3

Q ss_pred             CCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHH
Q 011743           47 HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY  126 (478)
Q Consensus        47 g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (478)
                      +-+..-+|.+-+.|.+..++.++..|.++|| +|||.++.+|.+..++...+++.+.                   ++..
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~-------------------~F~a  123 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR-------------------NFAA  123 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH-------------------HHHH
Confidence            3345567999999999999999999999999 7999999999999999888888765                   7777


Q ss_pred             HHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011743          127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       127 ~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  191 (478)
                      ++++|++.|+.-|-. ....++++|.+++++      |+.+++....+..+|.++||+++|++.+
T Consensus       124 fv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  124 FVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            888899999886653 456789999999988      9999999999999999999999999987

>TIGR00788 fbt folate/biopterin transporter

Probab=99.57  E-value=2.4e-13  Score=141.98  Aligned_cols=179  Identities=13%  Similarity=0.043  Sum_probs=130.6

Q ss_pred             CcchhHHHHH-HHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccc-----hhHHHH
Q 011743           13 GFRACTFVFV-LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS-----RFATCL   86 (478)
Q Consensus        13 ~~~~~~~l~~-~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----r~~~~~   86 (478)
                      +|+-.+.++. ..+..... +.+...++.++++++|+++.+.+...+...+...+-++ .|.++|| ++     ||+.++
T Consensus        23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~   99 (468)
T TIGR00788        23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLV   99 (468)
T ss_pred             CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHH
Confidence            3454444444 55555555 66777888889999999999999998888888877665 9999999 77     677777


Q ss_pred             HHHHHHH-HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhh
Q 011743           87 VFGTLEV-LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA  165 (478)
Q Consensus        87 ~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~  165 (478)
                      ++.++.. ++.  ..++..                ........+.+++.+++.+....+..++..|..+ ++++   .++
T Consensus       100 ~~~~l~~~~~~--~~l~~~----------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~  157 (468)
T TIGR00788       100 LSGLLGSAILY--GLLPGK----------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGP  157 (468)
T ss_pred             HHHHHHHHHHH--Hhcccc----------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCC
Confidence            7766653 322  222210                1133344457888999999999999999999998 4321   245


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          166 SYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       166 ~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ...++.+...++|..+|+.++|.+.+..+|+..|++.+...++..+...+.
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~  208 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS  208 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence            567778888899999999999999988899999999887776664444443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PTZ00207 hypothetical protein; Provisional

Probab=99.53  E-value=2.8e-11  Score=128.00  Aligned_cols=154  Identities=14%  Similarity=0.008  Sum_probs=120.3

Q ss_pred             HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 011743           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (478)
Q Consensus        37 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  116 (478)
                      .....+++++|++..+.+++.++.. ....+.++.|+++|| +|||+++.++.+++.++.++++++... . .       
T Consensus        48 v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~-~-i-------  116 (591)
T PTZ00207         48 LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQE-V-I-------  116 (591)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcc-c-c-------
Confidence            4445678999999999999887744 344567788999999 899999999999999999998876310 0 0       


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHhhhccchh
Q 011743          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI-GVTAIVYVFIDQGW  195 (478)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~p~i~~~l~~~~~~  195 (478)
                          ..+.+.+++.|++.|+|.+...+.....+.++|| ++      |+++.++.....++|+.+ +++..+++.  .+|
T Consensus       117 ----~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~  183 (591)
T PTZ00207        117 ----EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNT  183 (591)
T ss_pred             ----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhH
Confidence                1278889999999999999988888888999997 45      899999999999999975 555555554  367


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011743          196 WLGFLISSVATLIGLIALA  214 (478)
Q Consensus       196 ~~~f~i~~~~~~~~~~~~~  214 (478)
                      +..|++.++..++..++++
T Consensus       184 ~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        184 SAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777766655444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.53  E-value=3.1e-13  Score=142.29  Aligned_cols=179  Identities=13%  Similarity=0.122  Sum_probs=133.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      ++.........++....+|++..++|.|+++++|++..+.+.......++..++.+++|+++|| +|||+.+..+.+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~  327 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALF  327 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence            3333333444456678889999999999999999999888888888889999999999999999 899999988876555


Q ss_pred             HHHHH-HHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           94 LSLVM-LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        94 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      ++... +....                 ..+...+++++++.+++.+...+...+++.+.+|++.      |+++++..+
T Consensus       328 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~  384 (490)
T PRK10642        328 VLAIPAFILIN-----------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAF  384 (490)
T ss_pred             HHHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHH
Confidence            43333 22221                 1145667778888888777777777788889999988      999999877


Q ss_pred             HHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHHhc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ....+++.++|.+.+++.+.. +|+.++++..+..+++++..++.
T Consensus       385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            767777888999999887654 46766665555555555554444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.52  E-value=1.6e-12  Score=131.06  Aligned_cols=345  Identities=11%  Similarity=0.013  Sum_probs=191.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH-
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV-   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~-   93 (478)
                      +..|.+-...+.-.+++-...++++.+++++.|++.+++|.+.++..+...+.+|+.|.++|| +|.||-++....+.. 
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHH
Confidence            345555555555555555567999999999999999999999999999999999999999999 897776655543322 


Q ss_pred             -HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           94 -LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        94 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                       .+-++...-.  |.++            .+   ++++..+.++..+....+..+.. |.+.++.   .++.+-=+|-.+
T Consensus        86 l~~pff~~v~~--pll~------------~n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~---sr~~~feYG~~R  144 (412)
T PF01306_consen   86 LFGPFFIYVFG--PLLQ------------SN---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERV---SRRNGFEYGRAR  144 (412)
T ss_dssp             TCHHHHHHTHH--HHHH------------TT----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHH---HHHHSS-HHHHH
T ss_pred             HHHHHHHHHHH--HHHH------------HH---HHHHHHHHHHHHHHHHcccchHH-HHHHHHH---HHHhcCCcchHH
Confidence             2332222111  1000            02   33344444444444444433322 3332211   112344455667


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNP  252 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (478)
                      .-..+|.+++..++|.+.+ .+-+..|++.....++..++.+..+++..++.+..+.                       
T Consensus       145 ~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-----------------------  200 (412)
T PF01306_consen  145 MWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-----------------------  200 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-----------------------
T ss_pred             HHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-----------------------
Confidence            7889999999999999986 5667888876655544444444433221111000000                       


Q ss_pred             hhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchh
Q 011743          253 EELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTL  332 (478)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  332 (478)
                                      ...+++..+..|-                   .++-..++++.++.+.......|-.+.|..+.
T Consensus       201 ----------------~~~~~~~~~~~~~-------------------~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~  245 (412)
T PF01306_consen  201 ----------------LGAKKDKVSLKDV-------------------LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPI  245 (412)
T ss_dssp             ----------------SSS------HHHH-------------------HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------cccCCCCCcHHHH-------------------HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0000000000010                   00111244555554444444445555544443


Q ss_pred             hhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011743          333 SVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEV  412 (478)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~  412 (478)
                      |....  .+..    ...+..+...+++..++=.++.. +..++.+|       +++++.+.++..++++=.+..++.  
T Consensus       246 y~~~~--f~~~----~~g~~~~G~l~s~~v~~E~~~m~-~~p~li~r-------ig~k~~Lllag~i~~iRi~~~~~~--  309 (412)
T PF01306_consen  246 YFASF--FQSA----GQGNQMYGYLWSVQVFLEALMMF-FSPWLINR-------IGAKNLLLLAGVIMAIRIIGSGFA--  309 (412)
T ss_dssp             HHHHT--SSSH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHH--hccc----ccChhHHhHHHHHHHHHHHHHHH-HHHHHHHh-------cChHhHHHHHHHHHHHHHHHHhhh--
Confidence            32211  1110    11223333344444444333322 33445555       377788888877777777766666  


Q ss_pred             HHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHH
Q 011743          413 KRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLH  469 (478)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~  469 (478)
                                   .+++++++.-.+.++-..+......-++.+..|+++.++...+.
T Consensus       310 -------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  310 -------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             --------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred             -------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence                         57888898999999999999999999999999999988766653

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11462 putative transporter; Provisional

Probab=99.52  E-value=4.8e-12  Score=132.06  Aligned_cols=179  Identities=12%  Similarity=0.017  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhh---ccchhHHHH-HHHHHHHH
Q 011743           19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFATCL-VFGTLEVL   94 (478)
Q Consensus        19 ~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Gr~~~~~-~~~~~~~i   94 (478)
                      .--+.++..++.+..+..++..|+++.+|+++..+|.+..+.-+...+.-|+.|+++||   .+||||-.+ ++.+..++
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i   92 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI   92 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence            33456677777777777899999999999999999999999999999999999999997   278876655 45567777


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++....        +++.     .....++.+.-.+..++......+..++.+|+.++.+  |   |.+..++...+
T Consensus        93 ~~~llf~~p--------~~s~-----~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~s~r~~~  154 (460)
T PRK11462         93 VCVLAYSTP--------DLSM-----NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQSWRFVL  154 (460)
T ss_pred             HHHHHHhCC--------CCCc-----chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHHHHHHHH
Confidence            766655321        1110     1234556666677788888888899999999988643  2   78899998888


Q ss_pred             HHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHHHHHHHHHHHh
Q 011743          175 TTLAAMIGVTAIVYVFID-------QGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~-------~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      .++|..+++.+...+.+.       .+|+....+.+++.+++.++.+.
T Consensus       155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            888887777665443322       25676666555555555444443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.52  E-value=9.4e-18  Score=174.37  Aligned_cols=140  Identities=14%  Similarity=0.184  Sum_probs=116.7

Q ss_pred             hhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHH
Q 011743           51 AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS  130 (478)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (478)
                      .+.++..+...++..++.+++|+++|| +|||+++.++.++..++.++...+..                ..+.+.+.++
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~  108 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS----------------YNNFWMLLIG  108 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc----------------cccccccccc
Confidence            356889999999999999999999999 89999999999999999998887641                1267889999


Q ss_pred             HHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHHHH
Q 011743          131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID---QGWWLGFLISSVATL  207 (478)
Q Consensus       131 ~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~---~~~~~~f~i~~~~~~  207 (478)
                      |++.|++.|+..+..+.++.|..|+++      |++..++......+|..++..++-.+...   .+||..+.+..+..+
T Consensus       109 R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l  182 (451)
T PF00083_consen  109 RFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSL  182 (451)
T ss_pred             ccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999988      88999988888888888887665444332   359999888777665


Q ss_pred             HHHHHH
Q 011743          208 IGLIAL  213 (478)
Q Consensus       208 ~~~~~~  213 (478)
                      +..+..
T Consensus       183 ~~~~~~  188 (451)
T PF00083_consen  183 LVLLLR  188 (451)
T ss_pred             cccccc
Confidence            444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.51  E-value=2.5e-11  Score=123.90  Aligned_cols=136  Identities=12%  Similarity=0.079  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~   99 (478)
                      +....++.-+.+-...++++.|+++ .|+|..|+|.+.++..+...+.+++.|+++||+..+||.+.+..++.++...+.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555566899999885 679999999999999999999999999999995456777777666666654444


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  179 (478)
                      ....                   +.+.+++..++..+......|...++..+...++        ++-++-.+.-.++|.
T Consensus        86 ~~~~-------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~--------~~~YG~iRlwGSiGf  138 (400)
T PF03825_consen   86 AFSS-------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR--------GKDYGRIRLWGSIGF  138 (400)
T ss_pred             HHhc-------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc--------cCCCCcchhhhhHHH
Confidence            4332                   5666666677777777777777777776666532        234444444455555


Q ss_pred             HHHH
Q 011743          180 MIGV  183 (478)
Q Consensus       180 ~~~p  183 (478)
                      .++.
T Consensus       139 ~~~~  142 (400)
T PF03825_consen  139 IVAA  142 (400)
T ss_pred             HHHH
Confidence            5553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=2.6e-13  Score=141.92  Aligned_cols=178  Identities=15%  Similarity=0.084  Sum_probs=135.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +.+|.+.+..++....++++..++|.|+++++|++..+++.......++..++.+++|+++|| +|||+.+.....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHH
Confidence            347777777788888888888999999999999999999999999999999999999999999 8999987766554444


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +..+.....                 ..+....++.+++.|+..............|.+|++.      |+++.++....
T Consensus       337 ~~~~~~~~~-----------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~  393 (467)
T PRK09556        337 IFTLGVYQH-----------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTF  393 (467)
T ss_pred             HHHHHHHHh-----------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHH
Confidence            332222221                 1144445566666665433322223355669999887      99999999988


Q ss_pred             HHH-HHHHHHHHHHhhhc------------cchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          175 TTL-AAMIGVTAIVYVFI------------DQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       175 ~~~-g~~~~p~i~~~l~~------------~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .++ |+.++|.+.|++.+            ..+|+..|++..++.+++.+..+..
T Consensus       394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            886 77999999999988            5689999998877777776655443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.50  E-value=9e-13  Score=134.72  Aligned_cols=178  Identities=17%  Similarity=0.078  Sum_probs=134.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      +++|..+..+...+.....++....++|.|+++++|+++.+++.+.+...+...++.++.|+++|| +||||.+..+.+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~  291 (393)
T PRK15011        213 RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVA  291 (393)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHH
Confidence            344544444444444445555566789999999999999999999888888888899999999999 8999988877665


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      ..+....+....                   +.+.+++.+++.+++.|...+...+...|.+|+ +      |+++.+++
T Consensus       292 ~~~~~~~~~~~~-------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~  345 (393)
T PRK15011        292 GVCFYAGMLMAH-------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLY  345 (393)
T ss_pred             HHHHHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHH
Confidence            555443333222                   455566677777777776666666777888773 4      68899998


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ....++|..++|.++|.+.+..||+..|++..+..+++++..+..
T Consensus       346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            888899999999999999988899999998887777776665543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.7e-12  Score=133.39  Aligned_cols=175  Identities=15%  Similarity=0.067  Sum_probs=145.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHH---HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGI---SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~---~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      -|++++..++.++..+++..   .+-..+++++|-+..+++++.++......+..|+.+.+.|| +|.|++++.|.++..
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHH
Confidence            46666777777777776653   33456678899999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHH-HHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS-LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      +|.++..++.                   +.+.+++. =++.|+|.|+........+..+|++ +      |+.+.++..
T Consensus       123 ~g~~lssF~~-------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R~lA~Gia~  176 (509)
T KOG2504|consen  123 LGLLLSSFAT-------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------RALATGIAV  176 (509)
T ss_pred             HHHHHHHHHh-------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------HHHHHhhhh
Confidence            9999999886                   55555544 4568899999999999999988763 2      889999988


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      .+..+|..+-|.+..++.+.+|||..+++.+...+-..+.....++
T Consensus       177 ~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  177 SGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             ccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8889999988999999999999999999988877666655555554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.47  E-value=8.4e-12  Score=129.60  Aligned_cols=150  Identities=17%  Similarity=0.133  Sum_probs=127.0

Q ss_pred             ccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccch
Q 011743           43 KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGA  122 (478)
Q Consensus        43 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (478)
                      .+++|+...+.+.+.++|.++..++.+++|.+.|| +.-.+.+....+.+.+-.++.....                   
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~-------------------  132 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH-------------------  132 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            46788999999999999999999999999999999 8977777766666665554444433                   


Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh------ccchhH
Q 011743          123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF------IDQGWW  196 (478)
Q Consensus       123 ~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~------~~~~~~  196 (478)
                      +.+.+++.|+++|+..+...|+...+++.+|.+++      |+..+++++...++|.++|..++..+.      ...|||
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~  206 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR  206 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence            78889999999999999999999999999999988      999999999999999999999888753      346899


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCc
Q 011743          197 LGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       197 ~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      |.|++.+++.++..++.++..+
T Consensus       207 ~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  207 WLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             eehhHHHHHHHHHHheEEEEec
Confidence            9999999888766665555433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.47  E-value=3.8e-11  Score=116.61  Aligned_cols=297  Identities=12%  Similarity=0.075  Sum_probs=205.9

Q ss_pred             HHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 011743           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (478)
Q Consensus        36 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  115 (478)
                      ..+..-+.+++|++.+++|.+.++-.++..++.|++.+++.| +|.++.+..++++.++|..+=...             
T Consensus        32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~-------------   97 (395)
T COG2807          32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG-------------   97 (395)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence            344456788999999999999999999999999999999999 999999999999999988765432             


Q ss_pred             CccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-h
Q 011743          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ-G  194 (478)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~-~  194 (478)
                             +...++.+-.+.|.|.+..+...++.+-+.||++.       +..++.|....++|+.+++.+...+.++. |
T Consensus        98 -------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl~~~aaLaa~lavpla~~~~g  163 (395)
T COG2807          98 -------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSLGAGAALAAALAVPLAQHSGG  163 (395)
T ss_pred             -------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence                   46678889999999999999999999999999654       78999999999999999999998888876 7


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCC
Q 011743          195 WWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTN  274 (478)
Q Consensus       195 ~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (478)
                      |+....+-+...++++++++.-..+.+....+++.                  +                        ..
T Consensus       164 W~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~------------------~------------------------~~  201 (395)
T COG2807         164 WRGALGFWALLALLALLIWLPQALREQAASIATKL------------------V------------------------SV  201 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccccccccc------------------c------------------------cc
Confidence            99999988888888887776532111100000000                  0                        00


Q ss_pred             ccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCc
Q 011743          275 QFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSI  354 (478)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (478)
                                       .+-||        +...+...+.+.+-...||....+++..+.+++....        ..+.+
T Consensus       202 -----------------~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~--------~aG~l  248 (395)
T COG2807         202 -----------------RKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAA--------EAGSL  248 (395)
T ss_pred             -----------------ccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHH--------HhhhH
Confidence                             01111        1122223344555667788888888888876644322        23433


Q ss_pred             cCchhHHHHHHHHhhhhHHHH-HhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHH
Q 011743          355 PVLPLLFMAILIPIYEFLFVP-FARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSF  433 (478)
Q Consensus       355 ~~~~~l~~i~~~~~~~~~~~~-l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  433 (478)
                      ..+..+..+...     +..| +.+|..      +.+........++.++...+.+...             ..+++.  
T Consensus       249 lsl~~l~~~~~~-----ll~P~la~R~~------n~r~~~~~~~~~~l~G~~G~~~~P~-------------~~~~lw--  302 (395)
T COG2807         249 LSLMQLAQLPTA-----LLIPLLARRSK------NQRPLVVLALLLMLVGLVGLLLAPG-------------QLPILW--  302 (395)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHhc------ccchHHHHHHHHHHHHHHHHHHhhh-------------hHHHHH--
Confidence            333333333322     3333 333322      4555566666666666666655421             122222  


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccCCcchh
Q 011743          434 QYCIFGIADMFTFVGLLEFFYKEAPAGMR  462 (478)
Q Consensus       434 ~~~l~g~ge~~~~p~~~~~~~~~aP~~~~  462 (478)
                       .+++|+|.+..+|...+++...+.+.++
T Consensus       303 -~~llG~G~G~~F~laL~li~~rs~~a~~  330 (395)
T COG2807         303 -ALLLGLGQGGAFPLALTLILLRSSDAAI  330 (395)
T ss_pred             -HHHHhCccchHHHHHHHHHHhhcCChHH
Confidence             4889999999999999999999865544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.45  E-value=1.5e-12  Score=133.16  Aligned_cols=171  Identities=19%  Similarity=0.097  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 011743           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ  102 (478)
Q Consensus        23 ~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~  102 (478)
                      ...+..+++..+..+++.|+.+ .|+  .+.+.....+.++..++.++.|++.|| +||||.+..+..+..++.+++...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
T PRK05122        224 GLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLA  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh
Confidence            3344456666677788888764 455  345666777888888999999999999 899999998888888877666554


Q ss_pred             hhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 011743          103 AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG  182 (478)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  182 (478)
                      .                   +...+++++++.|++.+...|.......|.+|+++      |++++++++...++|..++
T Consensus       300 ~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~  354 (399)
T PRK05122        300 P-------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGIT  354 (399)
T ss_pred             c-------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence            3                   45566778889999999888888888888888776      8999999999999999999


Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceee
Q 011743          183 VTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRI  222 (478)
Q Consensus       183 p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~  222 (478)
                      |.+.|.+.+..||+..|++.+++.+++++..+..+++.++
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (399)
T PRK05122        355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPR  394 (399)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999888899999999888877777666655444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.44  E-value=3.2e-12  Score=127.01  Aligned_cols=174  Identities=21%  Similarity=0.217  Sum_probs=154.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhH-HHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVFGTLEV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~~~~~~~   93 (478)
                      |..+...+..++..........+++.|..+.+|.+..+.+.......++..++.++.|+++|| +|||+ .+..+..+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH
Confidence            445666777778888888888999999998889999999999999999999999999999999 89999 9999999988


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.+.+....                   +....++..++.+++.+...+...+++.|.+|+++      |++.++....
T Consensus       254 i~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  308 (352)
T cd06174         254 LGLLLLALAP-------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNT  308 (352)
T ss_pred             HHHHHHHHhc-------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHH
Confidence            8888777653                   46677888999999999999999999999999877      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      ..++|..++|.+.+.+.+..+|+..|.+.++..+++.+...
T Consensus       309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999888999999998888777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.43  E-value=2.7e-12  Score=129.08  Aligned_cols=170  Identities=14%  Similarity=0.092  Sum_probs=135.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      ..+.+....++..+.......+.+.|. +++|.+..+++.+...+.+...++.++.|+++|| +|||+.+.++.++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHH
Confidence            344455555555555555556666664 5689999999999999999999999999999999 89999999999888888


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .+++.....                 .+...++...++.+++.+...+..++++.|.+|+++      |++.+++.+...
T Consensus       284 ~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~  340 (377)
T TIGR00890       284 MAAMLFIPM-----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAK  340 (377)
T ss_pred             HHHHHHccc-----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHH
Confidence            776655431                 122334455677888888888888889999999888      999999999999


Q ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743          176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~  210 (478)
                      ++|..++|.+.|.+.+..||+..|.+.+++.++++
T Consensus       341 ~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       341 AVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            99999999999999988999999998877665543

>PRK09952 shikimate transporter; Provisional

Probab=99.42  E-value=4.4e-12  Score=131.62  Aligned_cols=181  Identities=10%  Similarity=-0.041  Sum_probs=133.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      ++.........++..+++|....+++.|+++++|++......+.....+...++.++.|+++|| +||||++..+.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~  327 (438)
T PRK09952        249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGT  327 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHH
Confidence            3433334445667778888888999999999999998876666666777788888999999999 899999998877665


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++...+......               ......+++..++.+++.+...+...++++|.+|.+.      |+++.++.+.
T Consensus       328 ~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~  386 (438)
T PRK09952        328 LSAFPFFMALEA---------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQ  386 (438)
T ss_pred             HHHHHHHHHHHc---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHH
Confidence            544333322100               1133344455666778888888888999999999877      8889998775


Q ss_pred             HH-HHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHhc
Q 011743          174 AT-TLAAMIGVTAIVYVFIDQ--GWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       174 ~~-~~g~~~~p~i~~~l~~~~--~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .. .+|+.++|.+.+++.+..  +|+..+.+.++..+++.+..+..
T Consensus       387 ~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        387 VASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            54 589999999999987643  48888887777777676665544

>PRK03699 putative transporter; Provisional

Probab=99.42  E-value=2.6e-12  Score=131.35  Aligned_cols=173  Identities=13%  Similarity=0.109  Sum_probs=136.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +.++.+.+..++...+++++..++|.|+++++|++..+++.+.+.+.++..++.+++|+++|| +|||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence            445666666677777788888999999999999999999999999999999999999999999 8999998877766666


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      ...++....                   +.....+..++.|++.+...+...+...+..|++       +++..++....
T Consensus       284 ~~~~~~~~~-------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~  337 (394)
T PRK03699        284 LMYLFVNTD-------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTC  337 (394)
T ss_pred             HHHHHHHcC-------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHh
Confidence            554443332                   3444555667788877777787777777766533       35567788888


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .++|..++|.+.|++.+..|++..|++.+++.+++.+...
T Consensus       338 ~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        338 GTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence            8999999999999999989999999887777666654433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.41  E-value=5.1e-12  Score=127.60  Aligned_cols=172  Identities=13%  Similarity=0.038  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+.+....++..........+++.|+++++|.++.+++.+.....+...++.+++|+++|| +|||+.+.++.++..+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFY  279 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHH
Confidence            3333444444444444555678889989999999999998888877888888999999999 899999988877655554


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .......                   +.+.+++.+.+.+++.+...+...++..|..|+ +      +++++++++...+
T Consensus       280 ~~~~~~~-------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~  333 (375)
T TIGR00899       280 TGLAADN-------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGR  333 (375)
T ss_pred             HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHH
Confidence            4433332                   455566777888888888888778888888764 3      5689999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +|..++|.+.|.+.+..||+..|++.+++.+++.+....
T Consensus       334 ~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       334 VGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            999999999999988889999999888877777666544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.40  E-value=4.1e-12  Score=138.17  Aligned_cols=135  Identities=15%  Similarity=0.025  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHH
Q 011743           55 NTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLY  134 (478)
Q Consensus        55 ~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  134 (478)
                      ....+..++..++.+++|+++|| +|||+++.++.++.+++.+++.+..                   +...+++.+++.
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-------------------s~~~ll~~~~l~  658 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-------------------SESAMIALLCLF  658 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-------------------cHHHHHHHHHHH
Confidence            34556668889999999999999 8999999999999998887777653                   344556667777


Q ss_pred             HhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          135 SLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       135 gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      +++.++..+...++++|++|++.      |++++++.+...++|+++||.+++.+.+ .+...+|++.+++.+++.++..
T Consensus       659 g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~-~~~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       659 GGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVG-ITKAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Confidence            88777788889999999999887      9999999999999999999999998765 3567788888777776666555


Q ss_pred             hc
Q 011743          215 IG  216 (478)
Q Consensus       215 ~~  216 (478)
                      +.
T Consensus       732 ~L  733 (742)
T TIGR01299       732 KL  733 (742)
T ss_pred             hC
Confidence            43

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.39  E-value=1.2e-10  Score=112.82  Aligned_cols=167  Identities=13%  Similarity=0.008  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .........++-.........+..-+....|.+..+..++......+..++....|.++|+ +||||...+......+..
T Consensus        79 l~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~  157 (528)
T KOG0253|consen   79 LFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFG  157 (528)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHH
Confidence            4445555566666656566666677778889999999999999999999999999999999 999999887776655544


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .+-..+                   .++..+++.|.+.++|.|+ .|...++-.|-.|..+      |....-+. ....
T Consensus       158 ~is~~s-------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~wa  210 (528)
T KOG0253|consen  158 VISGAS-------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWA  210 (528)
T ss_pred             HhhcCC-------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHH
Confidence            443332                   2778899999999999999 8999999999999877      66665555 5567


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~  211 (478)
                      +|.++...+.=.+...+||||-.+...+...+.+.
T Consensus       211 ig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~  245 (528)
T KOG0253|consen  211 IGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR  245 (528)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH
Confidence            77777777665566678999977766654433333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.38  E-value=1e-11  Score=130.71  Aligned_cols=150  Identities=19%  Similarity=0.151  Sum_probs=117.0

Q ss_pred             HhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011743           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (478)
Q Consensus        33 ~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  112 (478)
                      .+..++|.|+++++|++..+++.+.+...++..++.+++|+++|| +|||+.+..+.++..++.++.....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            456789999998999999999999999999999999999999999 8999999888776665554433221         


Q ss_pred             CCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011743          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (478)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  192 (478)
                              ..+.+...+..++.+....+..+..++++.|.+|+++      |++.+++.+...++|..+||.++|.+.+.
T Consensus       363 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        363 --------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             --------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence                    1133333344444433333445667788899999877      89999999999999999999999999998


Q ss_pred             chhHHHHHHHHHHH
Q 011743          193 QGWWLGFLISSVAT  206 (478)
Q Consensus       193 ~~~~~~f~i~~~~~  206 (478)
                      .||+..+.+.+...
T Consensus       429 ~g~~~~~~~~~~~~  442 (496)
T PRK03893        429 LDLGTALASLSFSL  442 (496)
T ss_pred             CChHHHHHHHHHHH
Confidence            99988876555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.38  E-value=3.6e-12  Score=128.95  Aligned_cols=167  Identities=13%  Similarity=0.101  Sum_probs=131.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +..+......++....++....+++.|+++++|.+..+.+.+.....+...++.++.|+++|| +|||+.+..+..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence            346666777778888888888999999999999999999999999999999999999999999 8999988766554443


Q ss_pred             HH-HHHH-HHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           95 SL-VMLT-IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        95 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .. .+.. ...                 ..+...++....+.+++.+...+...+.+.|.+|+++      |++++++.+
T Consensus       298 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~  354 (394)
T TIGR00883       298 LAVPLLMALLD-----------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAY  354 (394)
T ss_pred             HHHHHHHHHhc-----------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehh
Confidence            33 2222 211                 1245566677788888888889999999999999888      888888855


Q ss_pred             -HHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHH
Q 011743          173 -FATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVA  205 (478)
Q Consensus       173 -~~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~  205 (478)
                       ....+|..++|.++|++.+..| |+..++...+.
T Consensus       355 ~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       355 NLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence             4456888899999999988877 87776665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.37  E-value=1.5e-10  Score=117.91  Aligned_cols=184  Identities=16%  Similarity=0.069  Sum_probs=137.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc---cchhHH-HHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFAT-CLVFG   89 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~-~~~~~   89 (478)
                      .|+-..--...+..++.+-.+..++..|+++..|+++..+|.+..+.-+..++.-|+.|.++||.   +||+|- ++++.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            34444455677788888888899999999999999999999999999999999999999999974   677664 55556


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      +.+++..+++..+.+  .           +.+......++.-.+.++++..+.....++.+++.++.+  |   |.+..+
T Consensus        91 ip~~i~~~l~F~~p~--~-----------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~l~s  152 (467)
T COG2211          91 IPFAIVAVLLFITPD--F-----------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RASLTS  152 (467)
T ss_pred             HHHHHHHHHHHcCCC--c-----------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHHHHH
Confidence            778888877776541  0           112356677777888999999999999999999987644  2   788999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHHHHHHHHHHHh
Q 011743          170 FYLFATTLAAMIGVTAIVYVFI-------DQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~-------~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +-..+.++|..+...+.+.+..       ..||+..-.+.+++..+..+..++
T Consensus       153 ~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~  205 (467)
T COG2211         153 WRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF  205 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888887666555544432       346776666555555555444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.37  E-value=2.4e-12  Score=110.18  Aligned_cols=134  Identities=19%  Similarity=0.202  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHh
Q 011743           57 LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL  136 (478)
Q Consensus        57 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi  136 (478)
                      ...+.++..++.++.|+++|| +|||+.+..+..+..++.+++....                   +.+.+.+.+++.|+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~   63 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS-------------------NITVLIIARFLQGF   63 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHH
Confidence            445677888899999999999 8999999999988888877766543                   56777888999999


Q ss_pred             ccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          137 GCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       137 g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      +.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+.+.+..+|++.|++.+...+++.+.....
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        64 GAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999887      89999999999999999999999999888899999998877766665554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.37  E-value=1e-11  Score=127.06  Aligned_cols=170  Identities=11%  Similarity=0.013  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHcccccCCchh---hHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743           21 FVLSALENMGFIANGISMVLYFKNEMHFDIA---GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (478)
Q Consensus        21 ~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~   97 (478)
                      +...++.......+.++++.|+.+..+....   ..+.+..+..++..++.++.|+++|| +|||+.+..+..+..++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~  303 (408)
T PRK09874        225 FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHH
Confidence            3333444445455667778887765442222   24566667778888899999999999 8999999988887777666


Q ss_pred             HHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHH
Q 011743           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (478)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (478)
                      .+....                   +.+.+++.+++.|++.+...|...+.+.+..|+++      |++.+++++...++
T Consensus       304 ~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~  358 (408)
T PRK09874        304 PMSFVQ-------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDI  358 (408)
T ss_pred             HHHHhc-------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHH
Confidence            555432                   45667778889999999999999888888888777      89999999999999


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       178 g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      |..+||.++|.+.+..||+..|++.+++.+++.+..+..
T Consensus       359 g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        359 GNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998999999999888877776655443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=9e-12  Score=128.44  Aligned_cols=178  Identities=12%  Similarity=0.001  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHcccccCCc--------hhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHH
Q 011743           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFD--------IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG   89 (478)
Q Consensus        18 ~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   89 (478)
                      +.+++..++..........+++.|+++ .|.+        ..+.+...++..+...++.++.|+++|| +|||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence            345555555555444556777888754 4544        3667999999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ++..++..++......               ..+...+++.+++.|++.+...++...++.|.+|+++      |+++++
T Consensus       289 ~~~~v~~~l~~~~~~~---------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g  347 (418)
T TIGR00889       289 VAWALRFGFFAYGDPE---------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQG  347 (418)
T ss_pred             HHHHHHHHHHHHcCcc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHH
Confidence            9888887666553200               1134566778899999999988998999999999877      999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          170 FYL-FATTLAAMIGVTAIVYVFID------QGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       170 ~~~-~~~~~g~~~~p~i~~~l~~~------~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      +.+ ....+|..+||.++|++.+.      +||+..|.+.+++.+++.++.++..+
T Consensus       348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            997 56789999999999999876      46999999888877666665555444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.36  E-value=2.5e-11  Score=124.09  Aligned_cols=176  Identities=10%  Similarity=-0.017  Sum_probs=138.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +..|.+.+...+...+++++..+++.|+++ +|++..+++...+.+.++..++.++.|++.|| +|||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHH
Confidence            445666666677788888999999999976 79999999999999999999999999999999 8999999998887777


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCC-CChhhhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE-NDPKGAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~-~~~~~~~~r~~~~~~~~~  173 (478)
                      +..++....                 . +.....  ..+.|++.+...|.......+.+++ ++      +++.+++.+.
T Consensus       283 ~~~~~~~~~-----------------~-~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~  336 (393)
T PRK09705        283 GFCGFIWLP-----------------L-QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQG  336 (393)
T ss_pred             HHHHHHHcc-----------------c-hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHH
Confidence            766554322                 0 112222  2456788888888777777787763 33      7899999999


Q ss_pred             HHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ..+++..++|.+.|++.+..| |...|.+..++.+++.+......+
T Consensus       337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999998775 888888887777766655554433

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=1.1e-11  Score=126.47  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=131.9

Q ss_pred             HHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 011743           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAY  104 (478)
Q Consensus        25 ~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~  104 (478)
                      ++...++..+..+.+.|+++ .|.+  +.+.....+.++..++.++.|++.|| +||||.+..+..+.+++.+++.... 
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-  300 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP-  300 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-
Confidence            34445566666778888764 4554  35566677788888999999999999 8999999999888888877665442 


Q ss_pred             cccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 011743          105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT  184 (478)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  184 (478)
                                        +....++..++.|++.+...|...+.+.|.+|+++      |++++++++...++|..++|.
T Consensus       301 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~  356 (392)
T PRK12382        301 ------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGP  356 (392)
T ss_pred             ------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              45566778888999999888888888899998777      999999999999999999999


Q ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          185 AIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       185 i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      +.|++.+..||+..|.+.+++.+++.+..+..
T Consensus       357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        357 LAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            99999998999999999888777776665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.35  E-value=1.1e-11  Score=129.18  Aligned_cols=177  Identities=12%  Similarity=0.105  Sum_probs=124.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc--chhHHH-HHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATC-LVFGTL   91 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Gr~~~~-~~~~~~   91 (478)
                      +.+|..++..++.....+++..++|.|++++.|++..+++.....+.++..++.+++|+++|| +  |||+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHH
Confidence            446666777777777778888999999999999999999999999999999999999999999 7  455432 222333


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      ..++...+....                 ..+....++..++.|.+.............|.+|+++      |++++++.
T Consensus       332 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  388 (452)
T PRK11273        332 VTIATIVYWLNP-----------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  388 (452)
T ss_pred             HHHHHHHHHHhc-----------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHH
Confidence            333333322211                 0123333344444444322222223345678999888      99999999


Q ss_pred             HHHHHHHHHH-HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          172 LFATTLAAMI-GVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       172 ~~~~~~g~~~-~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +...++|+.+ +|.+.|++.+..||+..|++.++..+++++....
T Consensus       389 ~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        389 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            9888888654 7999999999899999999888877766655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.34  E-value=4.3e-11  Score=122.11  Aligned_cols=173  Identities=9%  Similarity=-0.054  Sum_probs=134.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+......++.....++...+++.|++++.|++..+++.+...+.++..++.++.|+++|| +|||+. ..+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~-~~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFL-LIAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHH-HHHHHHHHHHH
Confidence            4444455555566666677788889888899999999999999999999999999999999 898764 44555444444


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .+.....                  .+...+++..++.|++.+...+...+.+.+..| ++      |+++++++....+
T Consensus       285 ~~l~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~  339 (390)
T PRK03545        285 LLLLPAA------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIFN  339 (390)
T ss_pred             HHHHHHh------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHHH
Confidence            3332221                  155666677888888887777777777777765 35      7889999988899


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      +|..+||.++|++.+..|++..|++.+++.+++++..+..
T Consensus       340 ~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        340 IGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888877777666554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.34  E-value=1.9e-11  Score=125.85  Aligned_cols=159  Identities=11%  Similarity=-0.059  Sum_probs=130.9

Q ss_pred             HHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011743           31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP  110 (478)
Q Consensus        31 ~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  110 (478)
                      ..++..++|.|+++.+|++..+.+++.+...++..++.++.|+++|| .++++.+..+.++.+++.+++....       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc-------
Confidence            35566788999988899999999999999999999999999999999 7888888888887777766655432       


Q ss_pred             CCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011743          111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (478)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  190 (478)
                                  +....++..++.|++.+...+...+++.|.+|++.      |++++++++...++|..+||.+.|++.
T Consensus       311 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~  372 (417)
T PRK10489        311 ------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLG  372 (417)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence                        45556677788888888777777888999999777      899999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          191 IDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       191 ~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +..|++..+++.+....+..++...
T Consensus       373 ~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        373 AMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHhchhhHHHHHHHHHHHHHHHHHH
Confidence            9889888888776655544444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.33  E-value=3e-11  Score=123.74  Aligned_cols=168  Identities=14%  Similarity=-0.047  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~   99 (478)
                      +....++....++.+..++|.|+++ .|++..+.+.+...+.++..++.++.|+++|| +|||+.+..+.+...++...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~  302 (406)
T PRK11551        225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAAL  302 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHH
Confidence            3344445555667777788888875 79999999999999999999999999999999 899999988766666655544


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  179 (478)
                      ....                   +...+.+..++.|++.+...+...++..|.+|+++      |+++.++.+...++|.
T Consensus       303 ~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~  357 (406)
T PRK11551        303 AAAP-------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGS  357 (406)
T ss_pred             HhcC-------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHH
Confidence            4332                   34445566677788777778888899999999888      9999999999999999


Q ss_pred             HHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHH
Q 011743          180 MIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       180 ~~~p~i~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .++|.+.|.+.+.. +|...+++...+.+++.+..+
T Consensus       358 ~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        358 MAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999987754 455666655555555444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.33  E-value=2.4e-11  Score=125.90  Aligned_cols=177  Identities=18%  Similarity=0.098  Sum_probs=121.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc--chhHHH-HHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATC-LVFGTLE   92 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Gr~~~~-~~~~~~~   92 (478)
                      .+|.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++|| +  ++|+.. ....+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHH
Confidence            35556666666667777788899999988999999999999999999999999999999999 6  333332 2222111


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .+..+.+.....                 .+.....+..+..|++.............|.+|+++      |+++.++.+
T Consensus       323 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  379 (434)
T PRK11663        323 LLSVGSLWLMPF-----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVG  379 (434)
T ss_pred             HHHHHHHHHccc-----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHH
Confidence            222111111110                 022222233333333222111222345678888777      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ...++|..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus       380 ~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  423 (434)
T PRK11663        380 LFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF  423 (434)
T ss_pred             HHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998999999998888877766655544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.33  E-value=6e-12  Score=129.77  Aligned_cols=169  Identities=12%  Similarity=-0.027  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHcccc---cCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743           21 FVLSALENMGFIANGISMVLYFKNE---MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (478)
Q Consensus        21 ~~~~~~~~~~~~~v~~~l~~yl~~~---lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~   97 (478)
                      .+...+....+......++.|+.+.   .+.+..+.+.+.++..+...++.+++|+++|| +||||.+..+..+..++.+
T Consensus       229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~  307 (420)
T PRK09528        229 VLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRII  307 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHH
Confidence            3333333344333444566666544   35667788999999999999999999999999 8999999999888888877


Q ss_pred             HHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH-HHHHHH
Q 011743           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YLFATT  176 (478)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~-~~~~~~  176 (478)
                      +...+.                   +.+.+++.+.+.+++.+...+....++.|.+|++.      +++.++. +....+
T Consensus       308 l~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~  362 (420)
T PRK09528        308 GSGFAT-------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQ  362 (420)
T ss_pred             HHHhcc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHH
Confidence            776553                   56677788889998888887888888899998776      6776655 456678


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +|..++|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus       363 lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        363 LGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999899999999877776655544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.33  E-value=5.2e-11  Score=121.26  Aligned_cols=169  Identities=9%  Similarity=-0.049  Sum_probs=143.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+..++..++...+......+.+.|+++ +|.+..+.|.+..+..++..+..++.|++.|| +|+|+++.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence            446667777777788888888999999965 89999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH-H
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-F  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~-~  173 (478)
                      ...++..++                   +.+.+++...+.|+..|...+....++.+. |+++      ++++.+++. .
T Consensus       283 ~~~~~~~~~-------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~  336 (382)
T TIGR00902       283 RWAIIGAIE-------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNAL  336 (382)
T ss_pred             HHHHHHhHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHH
Confidence            988777654                   778888899999999999999999999987 7766      788889876 4


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~  212 (478)
                      ...+|..++|.++|++.+..|+ ..|++.++..++++++
T Consensus       337 ~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       337 AMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            5679999999999999998886 5566666666655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.32  E-value=5.1e-11  Score=121.20  Aligned_cols=159  Identities=14%  Similarity=0.108  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 011743           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAY  104 (478)
Q Consensus        25 ~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~  104 (478)
                      +.....+.....++|.|+++ .|.+..+++...+...+...++.++.|+++|| +|||+.+..+.++..++.+... .  
T Consensus       210 ~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~--  284 (381)
T PRK03633        210 IISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S--  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h--
Confidence            33334444556778888875 69999999999999999999999999999999 8999999988888777665443 1  


Q ss_pred             cccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 011743          105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT  184 (478)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  184 (478)
                                        . ......+.+.+++.+...|...+.+.|..|+++      ++...+.+....++|..+||.
T Consensus       285 ------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~  339 (381)
T PRK03633        285 ------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPS  339 (381)
T ss_pred             ------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              1 122345666777777778888888899888665      666777777788999999999


Q ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 011743          185 AIVYVFIDQGWWLGFLISSVATLIGLIAL  213 (478)
Q Consensus       185 i~~~l~~~~~~~~~f~i~~~~~~~~~~~~  213 (478)
                      ++|++.++.+|++.|.+.+.+.+++.+..
T Consensus       340 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        340 FTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            99999998999999998777766554333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.32  E-value=2.4e-11  Score=123.74  Aligned_cols=156  Identities=15%  Similarity=0.066  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 011743           21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT  100 (478)
Q Consensus        21 ~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~  100 (478)
                      .....+.....+.+..+++.|+.+++|++..+++.+.....++..++.++.|+++|| +|||+.+.++.++..+......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~  322 (405)
T TIGR00891       244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVF  322 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHH
Confidence            333344455555667788999999999999999999999999999999999999999 8999999888776543332222


Q ss_pred             HHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 011743          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM  180 (478)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  180 (478)
                      ...                  .+.+.+.+..++.++..+...+..++++.|.+|+++      |++++++.+...++|..
T Consensus       323 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~  378 (405)
T TIGR00891       323 AIG------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGA  378 (405)
T ss_pred             HhC------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHH
Confidence            111                  144455566666777767777888899999999888      99999999999999999


Q ss_pred             HHHHHHHhhhccch-hHHHHHH
Q 011743          181 IGVTAIVYVFIDQG-WWLGFLI  201 (478)
Q Consensus       181 ~~p~i~~~l~~~~~-~~~~f~i  201 (478)
                      ++|.+.|++.+..| |+..|..
T Consensus       379 ~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       379 LAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHhccccchhHHh
Confidence            99999999999888 8776654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.31  E-value=4.7e-11  Score=120.48  Aligned_cols=177  Identities=17%  Similarity=0.070  Sum_probs=130.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHH-HHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC-LVFGTLEV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~-~~~~~~~~   93 (478)
                      |..+..++..++....++....+++.|+++++|.+..+++.+.....+...++.+++|+++|| +|||+.. ........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence            446667777888888888888999999999999999999999999999999999999999999 8998621 11111111


Q ss_pred             HHHH---HHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           94 LSLV---MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        94 i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      ++.+   +......  .             ..+.........+.+.+.+ ..+...+++.|.+|+++      |++++++
T Consensus       294 ~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~  351 (399)
T TIGR00893       294 IAGLVLSLLMFATN--Y-------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGL  351 (399)
T ss_pred             HHHHHHHHHHHHhc--c-------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHH
Confidence            1111   1111110  0             0122333333333444444 78889999999999888      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHH
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .....++|..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus       352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888 99999888777766655543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.31  E-value=1.9e-11  Score=127.56  Aligned_cols=173  Identities=14%  Similarity=0.056  Sum_probs=135.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc-cchhHHHHHHH--HHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY-LSRFATCLVFG--TLE   92 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~--~~~   92 (478)
                      ..+..+...++..++++....+++.|+++ +|++..+++.+.++..++..++.+++|+++||+ +++|+...++.  +..
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            35556666777778888888899999864 799999999999999999999999999999973 23344333333  333


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++.+++....                   +.+.+++.+++.|++.+...++..+.+.|.+|+++      +++.++++.
T Consensus       321 ~l~~ll~~~~~-------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~  375 (455)
T TIGR00892       321 GLTHLLCALAG-------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVT  375 (455)
T ss_pred             HHHHHHHHHhc-------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHH
Confidence            33333333332                   56667788999999999999999999999999877      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHH
Q 011743          173 FATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      ...++|..+||.++|++.+.. +|+..|++.+++.+++.+...
T Consensus       376 ~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~  418 (455)
T TIGR00892       376 IVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLA  418 (455)
T ss_pred             HHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHH
Confidence            999999999999999998876 599999998887766655433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.9e-11  Score=121.04  Aligned_cols=179  Identities=16%  Similarity=0.133  Sum_probs=140.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc-chhHHHHHH-HHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFATCLVF-GTLE   92 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~~~~-~~~~   92 (478)
                      |.+|.+++..++--+.=|++..+.|.|+.++.|+|..++++..+.|-.+...++++.||++||++ |||..+.+. ++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            67899999999888888999999999999999999999999999999999999999999999998 777665443 3334


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++.+....+.                 ..+..+..+..+.+|+-..+-+-.+.....|..|++-      -|++.|+..
T Consensus       332 ~~~~~~~w~~~-----------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~G  388 (448)
T COG2271         332 TASLVLYWLAP-----------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVG  388 (448)
T ss_pred             HHHHHHHHcCC-----------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhh
Confidence            44444444332                 1255666666666766655544444556678888766      789999999


Q ss_pred             HHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          173 FATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       173 ~~~~~-g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .+..+ |+..+....|++.+.+||...|.+..+..+++.+++...
T Consensus       389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            88887 889998889999888999999998777776666655544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.28  E-value=9.4e-11  Score=122.98  Aligned_cols=173  Identities=12%  Similarity=0.016  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhH-----HHH--HHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-----TCL--VFG   89 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-----~~~--~~~   89 (478)
                      .|.+.+..++.....+.+..+++.|+.+++|++..+++.+.+++.++..++.+++|+++|| +|||+     ...  +..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHH
Confidence            4555554444555556667788999998999999999999999999999999999999999 88762     222  222


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ++..+..+++...                   .+.....+..++.+++.+...+...+++.+..| ++      ++...+
T Consensus       333 ~l~~i~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g  386 (476)
T PLN00028        333 TLGGVFCIWLGRA-------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISG  386 (476)
T ss_pred             HHHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhh
Confidence            2222222222111                   133444455556666655555555666666543 34      788898


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcC
Q 011743          170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGK  217 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~  217 (478)
                      +...+.++|+.++|.+.+ .....+|+..|++.+++.+++.++.++.+
T Consensus       387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            887777777777776543 22234699999999888887777766654

>TIGR00897 2A0118 polyol permease family

Probab=99.28  E-value=1.4e-10  Score=118.95  Aligned_cols=177  Identities=12%  Similarity=0.050  Sum_probs=131.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHH-HHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-VFGTLEV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~   93 (478)
                      |..+...+..++...++++...++|.|++ ++|++..+.+.+.....++..++.++.|+++|| +|||+.+. .+.....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHH
Confidence            33566667777888888888999998885 589999999999999999999999999999999 89988764 2333333


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.+.+...... .             ..+....++..++.|++.+...+. .+...|.. +++      |++++++.+.
T Consensus       300 ~~~~~l~~~~~~-~-------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~------~g~~~g~~~~  357 (402)
T TIGR00897       300 IFTLALYYIPQH-F-------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKH------KGAAMSVLNL  357 (402)
T ss_pred             HHHHHHHHHHHc-c-------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cch------hHHHHHHHHH
Confidence            333332221100 0             114455566777788887776553 45556654 345      8999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ..++|..++|.+++.+.+..||...|++.+++.+++.+...+
T Consensus       358 ~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       358 SAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999889999999888877766655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.27  E-value=2.3e-10  Score=114.39  Aligned_cols=178  Identities=16%  Similarity=0.111  Sum_probs=148.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      .+.++..+...++...+.|..++|+.+|+++..|++....++++..|.++..++.+++|+++||  +.|+++.....+.+
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a  287 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA  287 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence            3558888899999999999999999999999999999999999999999999999999999999  88889888888888


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      +....+.....                  +.+...+..++.|++..........-.++.. +++      ++.+.+++..
T Consensus       288 ~~~l~l~~~~~------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl~~a  342 (394)
T COG2814         288 LALLALTFTGA------------------SPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSLNVA  342 (394)
T ss_pred             HHHHHHHHhcc------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHHHHH
Confidence            87777666542                  4555666666677766655555555556632 344      6899999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      +.|+|..+|..++|.+.+++|+....++.++..++++++.+...+
T Consensus       343 a~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         343 AFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988888877665443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.27  E-value=8e-11  Score=122.01  Aligned_cols=151  Identities=15%  Similarity=0.135  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHH-HHH
Q 011743           22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV-MLT  100 (478)
Q Consensus        22 ~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~-~~~  100 (478)
                      ...++....++.+..++|.|+++.+|++..++++......++..++.+++|+++|| +||||.+..+..+..+... ...
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence            34445566778888999999999899999999999989999999999999999999 8999998876554433221 111


Q ss_pred             HHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH-HHH
Q 011743          101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT-LAA  179 (478)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~  179 (478)
                      ....                ..+.....+...+.+++.+...+...+++.|.+|++.      |++++++.+...+ +++
T Consensus       324 ~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g  381 (434)
T PRK15075        324 WLVA----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFG  381 (434)
T ss_pred             HHHc----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHh
Confidence            1110                1123333344455566667767777788999999888      8999998765554 457


Q ss_pred             HHHHHHHHhhhccchh
Q 011743          180 MIGVTAIVYVFIDQGW  195 (478)
Q Consensus       180 ~~~p~i~~~l~~~~~~  195 (478)
                      .++|.+.+++.+..|+
T Consensus       382 ~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        382 GFTPAISTWLIHVTGD  397 (434)
T ss_pred             hhHHHHHHHHHHhcCC
Confidence            7899999999887775

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=1.5e-10  Score=121.84  Aligned_cols=180  Identities=17%  Similarity=0.174  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHH-HHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLT-NFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      .|.++...++...+.+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++|| +||||.+.++.++.+++
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            344444445555666666678888888889999999999875 5567899999999999999 89999888777665555


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .+.+......               ..+...+.+..++..++.|...+...++..+..+++.      +++.+++.+...
T Consensus       303 ~l~~~~l~~~---------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~  361 (491)
T PRK11010        303 NAGYWLLSIT---------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALS  361 (491)
T ss_pred             HHHHHHHHhc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHH
Confidence            4333221100               1133334445556555556555667788888888877      788899999889


Q ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ++|..+++.+.|++.+..||+..|.+.+++.+++++.....++
T Consensus       362 ~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        362 AVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988889999999899999999888888887776665543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.26  E-value=1.1e-10  Score=121.21  Aligned_cols=170  Identities=16%  Similarity=-0.016  Sum_probs=119.5

Q ss_pred             HHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011743           31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP  110 (478)
Q Consensus        31 ~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  110 (478)
                      .+.+..+.+ ++.+++|++..+++.......+...++.+++|+++|| +|||+.+.++.++.+++.+++........ . 
T Consensus       300 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  375 (481)
T TIGR00879       300 INAIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV-T-  375 (481)
T ss_pred             CeehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc-C-
Confidence            333344444 4456789999889999999999999999999999999 89999999998888877766653211000 0 


Q ss_pred             CCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011743          111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (478)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  190 (478)
                         ..+   +..+...+....+..+.......+...+++.|.+|+++      |+++.++.....++|..++|.+.+.+.
T Consensus       376 ---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       376 ---GSS---KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             ---Ccc---cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000   00012222222222222222334666777899999887      899999999999999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          191 IDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       191 ~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      +..+|++.|++.+++.+++.++..+.
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHhee
Confidence            88899999988887777666655544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.26  E-value=2.4e-09  Score=106.53  Aligned_cols=334  Identities=15%  Similarity=0.049  Sum_probs=186.2

Q ss_pred             cccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccc-----hhHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 011743           42 FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS-----RFAT-CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (478)
Q Consensus        42 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----r~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  115 (478)
                      +..|++++..-.+.......+... ..+..|+.||+ -+     ||.- ++.|..++..+..+.+.+..  .+.+...+.
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~--~l~~~~~~~   81 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALL--LLAESGQQS   81 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHH--HHccccccc
Confidence            346788888888888887776655 58899999999 56     5544 44556667777666654431  111100000


Q ss_pred             CccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 011743          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      + -+.........++-.+.|+|.+....+..++++|..|+++      |++..++.+.+.-+|..++..+.+.+.+.++.
T Consensus        82 ~-~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~  154 (403)
T PF03209_consen   82 S-GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP  154 (403)
T ss_pred             c-cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            0 0001122334455566888888888899999999999988      99999999999999999999999977766652


Q ss_pred             H-HHHHHHH---HHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccC
Q 011743          196 W-LGFLISS---VATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIP  271 (478)
Q Consensus       196 ~-~~f~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (478)
                      . ..=.+..   +...+.++..+-..++.++..+   .                  .++                     
T Consensus       155 ~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~---~------------------~~~---------------------  192 (403)
T PF03209_consen  155 ERLIQVIQGVALIALLLNLIALWGQEPRRSRRAA---A------------------AER---------------------  192 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc---C------------------CCC---------------------
Confidence            2 2222222   2222222222221111111000   0                  000                     


Q ss_pred             CCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCC
Q 011743          272 HTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPT  351 (478)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (478)
                        ++.++.+.             |+.+..+  .+.++++  ..+++....+.+-..-+.+ |-=+..+|+.      -.+
T Consensus       193 --~~~~f~~a-------------~~~~~~~--~~a~~f~--~fl~l~t~a~~~QD~iLEP-ygg~Vfgmsv------~eT  246 (403)
T PF03209_consen  193 --PRPPFREA-------------WRQVWAS--PQARRFF--VFLFLGTLAFFMQDVILEP-YGGEVFGMSV------GET  246 (403)
T ss_pred             --CCccHHHH-------------HHHHHhC--CChhHHH--HHHHHHHHHHHhhHHHcCC-chhHHcCCCH------HHH
Confidence              00001110             0000000  0112221  1222222222221111111 1001111110      011


Q ss_pred             CCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHH
Q 011743          352 PSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWL  431 (478)
Q Consensus       352 ~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  431 (478)
                      ..++.....+.++...+.++...   ||       .++.+...+|...+++++.........            .+.+.+
T Consensus       247 T~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~~------------~~~~~~  304 (403)
T PF03209_consen  247 TRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGPL------------GSPWLF  304 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHhc------------ccchHH
Confidence            22334444555555555554322   22       244555667777777777665554211            356778


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhcc
Q 011743          432 SFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA  476 (478)
Q Consensus       432 ~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg  476 (478)
                      -...+++|++.++......+...+.++++..|..+|+|...+.++
T Consensus       305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A  349 (403)
T PF03209_consen  305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIA  349 (403)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999988765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.25  E-value=1.7e-10  Score=119.57  Aligned_cols=167  Identities=16%  Similarity=0.061  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-Hh
Q 011743           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI-QA  103 (478)
Q Consensus        25 ~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~-~~  103 (478)
                      .+....+|++..++|.|+++++|++..+++....+..+...++.++.|+++|| +|||+.+.++.++.++....... ..
T Consensus       253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~  331 (432)
T PRK10406        253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQ  331 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467788899999999999999999999998888888888999999999999 89999888776654433322211 11


Q ss_pred             hcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHH-HHHHH
Q 011743          104 YSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL-AAMIG  182 (478)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~  182 (478)
                      .                ..+....+....+...+.+...+...++.+|.+|++.      |++++++.+...++ ++...
T Consensus       332 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~~  389 (432)
T PRK10406        332 N----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGSA  389 (432)
T ss_pred             c----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhHH
Confidence            0                0122221121222223333334556678899999988      99999999876654 34558


Q ss_pred             HHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHh
Q 011743          183 VTAIVYVFIDQG-WWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       183 p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      |.+.+.+.. .| |...+++.++..+++++..++
T Consensus       390 p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        390 EYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            888886644 45 656666655555555555444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.24  E-value=2e-10  Score=119.58  Aligned_cols=185  Identities=17%  Similarity=0.102  Sum_probs=152.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchh--HHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF--ATCLVFGTL   91 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~--~~~~~~~~~   91 (478)
                      .|.+...++..++-+-+..++..+...|.++++|++..+...+..+.++...++.++.|++.|| +|.|  +++.+++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHH
Confidence            3567777888888899999999999999999999999999999999999999999999999999 8999  888888877


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      ..+-.+.-.+.-. +    ...|      ..+.+.+++.-++.|+..|..++..-++.+++.|+++      .+..|+++
T Consensus       359 ~~~i~~~g~~G~~-~----~~~g------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly  421 (477)
T PF11700_consen  359 WIIIPLYGLFGFW-P----SFFG------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLY  421 (477)
T ss_pred             HHHHHHHHHHHhh-h----cccC------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHH
Confidence            6443322222000 0    0011      1256667778889999999999999999999999988      79999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhc
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ....-..+.+||.+.|.+.+..| .|.++....++.+++++++...
T Consensus       422 ~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  422 AITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999988765 8999988888878787776554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.23  E-value=1.4e-10  Score=114.92  Aligned_cols=184  Identities=14%  Similarity=0.073  Sum_probs=149.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      .|.+|.+.+..+...-++-+...+++.|++++++.++.++|.+...+.....+..+++|+++|| +|.+|++.+..+..+
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999999999999999999 899999888888888


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++........+  ..     ++     ..+....+...+.+++..|.-...+..++...+|++       .+...++...
T Consensus       296 ~~~~~l~~~~~--~~-----~~-----~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga  356 (417)
T COG2223         296 LAAALLSLFLT--GF-----GH-----GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGA  356 (417)
T ss_pred             HHHHHHHcccc--cc-----cc-----CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHH
Confidence            77776665421  00     00     124555555566677777777888888888888753       4788889888


Q ss_pred             HHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhcC
Q 011743          174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGK  217 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~  217 (478)
                      ..++|+..-|...+...+..| +...|++...+.+++.++.+...
T Consensus       357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888888877666 89999988888777777655543

>PRK10504 putative transporter; Provisional

Probab=99.22  E-value=2.8e-10  Score=119.07  Aligned_cols=158  Identities=11%  Similarity=-0.002  Sum_probs=125.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |.....+...++...++.....+.+.|++..+|.++.++++......++..++.++.|+++|| +|||+++..+..+.++
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence            345556666677777766666677888887899999999999998888888888999999999 8999999999888877


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +..++.....                ..+...+.+..++.|++.+...+...++..+.+|+++      +++++++.+..
T Consensus       340 ~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  397 (471)
T PRK10504        340 VSLLFMLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMI  397 (471)
T ss_pred             HHHHHHhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHH
Confidence            7666554321                1133334455677888888888888899999999877      89999999999


Q ss_pred             HHHHHHHHHHHHHhhhccchh
Q 011743          175 TTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      .++|..+|+.++|.+.+..++
T Consensus       398 ~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        398 MQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999988665554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.4e-10  Score=107.03  Aligned_cols=180  Identities=14%  Similarity=0.079  Sum_probs=138.1

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHH
Q 011743            9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF   88 (478)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   88 (478)
                      -.+.+....|++.+...+--...+=....-+.++++.+|+|+..++.+.+.......+..|+.|.++|| .||+...+.+
T Consensus       258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~  336 (459)
T KOG4686|consen  258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVAS  336 (459)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHH
Confidence            334566678887776665555544444455678999999999999999999999999999999999999 7999888777


Q ss_pred             HHHH-HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhH
Q 011743           89 GTLE-VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (478)
Q Consensus        89 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~  167 (478)
                      ..+. .++...+.++                     .+.-+.++.++|+...+...+..+.++...|+++      .+++
T Consensus       337 a~~~tl~~H~~l~Ft---------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTa  389 (459)
T KOG4686|consen  337 ACILTLLGHSGLFFT---------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTA  389 (459)
T ss_pred             HHHHHHHHhhhHHhh---------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcch
Confidence            6554 4455555443                     2335677888999988888889999999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccch---hHHHHHHHHHHHH-HHHHHHHhc
Q 011743          168 FNFYLFATTLAAMIGVTAIVYVFIDQG---WWLGFLISSVATL-IGLIALAIG  216 (478)
Q Consensus       168 ~~~~~~~~~~g~~~~p~i~~~l~~~~~---~~~~f~i~~~~~~-~~~~~~~~~  216 (478)
                      ++..+...|+|-.+-|++.|++.+.-|   |--.|++....+. ....+.+..
T Consensus       390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            999999999999999999999987644   4456666555543 333344443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2e-10  Score=107.48  Aligned_cols=155  Identities=12%  Similarity=0.194  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHHHHHhH--HHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANG--ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~--~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      ..++.+..++..-+|+..=  .-+.++++.+.+++.++..++.+.++.-+.+.+.++||+.||.+|-|..-++-+....+
T Consensus        43 ~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~  122 (459)
T KOG4686|consen   43 FMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL  122 (459)
T ss_pred             HHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence            3334444444444443322  23456777788888888899999999999999999999999998988766666666667


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      |.+.++....                ...++....+|++.|+|.-....+.+.+...+|..++      ....+++....
T Consensus       123 GqliFa~Ggi----------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSv  180 (459)
T KOG4686|consen  123 GQLIFAAGGI----------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSV  180 (459)
T ss_pred             HHHHHHhchH----------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHH
Confidence            7766654321                2378999999999999998888999999999999988      89999999999


Q ss_pred             HHHHHHHHHHHHHhhhccc
Q 011743          175 TTLAAMIGVTAIVYVFIDQ  193 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~  193 (478)
                      ..+|...--.+.+++.++.
T Consensus       181 AR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  181 ARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             HHhhceeeeeecHHHHHHH
Confidence            9999887777777776543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.20  E-value=1.6e-10  Score=119.81  Aligned_cols=179  Identities=11%  Similarity=0.024  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      ..|...+..++.....+++..++|.|+++..|++..++++....+.+...++.+++|+++|| +|+++....+.....+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHH
Confidence            35555566666667778888999999999999999999999999999999999999999999 76544323333222221


Q ss_pred             ---HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           96 ---LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        96 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                         ...+....                 ..+....+...++.|++.............|.+|+++      |+++.++.+
T Consensus       331 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  387 (438)
T TIGR00712       331 TIAVIVYWMNP-----------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG  387 (438)
T ss_pred             HHHHHHHHhcC-----------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhc
Confidence               11111111                 0122223333444444332222222345678888877      899999998


Q ss_pred             HHHHHHH-HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          173 FATTLAA-MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       173 ~~~~~g~-~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ...++|+ .++|.+.|.+.+..||...|++.++..+++.+..++..+
T Consensus       388 ~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       388 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             hHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888774 689999999999889999998877776666665555433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=3.5e-10  Score=112.80  Aligned_cols=140  Identities=11%  Similarity=0.109  Sum_probs=104.2

Q ss_pred             CCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHH
Q 011743           47 HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY  126 (478)
Q Consensus        47 g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (478)
                      |++....+.++.+..++..+++++.||++|| +|||+++...+++..+++++++++.          |++  +...-..+
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~----------~~~--~~~~~m~~  146 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV----------GTT--SPLGVMMT  146 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC----------CCC--CCcchhhH
Confidence            4778888999999999999999999999999 8999999999999999998555432          111  11125678


Q ss_pred             HHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHhhhcc----------
Q 011743          127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY----LFATTLAAMIGVTAIVYVFID----------  192 (478)
Q Consensus       127 ~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~----~~~~~~g~~~~p~i~~~l~~~----------  192 (478)
                      ++..|+++|+|.|+=+|...+..+|...+++      |+...+..    .+++-.|+.++-++.+-....          
T Consensus       147 L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~l  220 (538)
T KOG0252|consen  147 LCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHL  220 (538)
T ss_pred             HHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHH
Confidence            8899999999999999999999999877665      66555544    344445555554444433211          


Q ss_pred             -chhHHHHHHHHHH
Q 011743          193 -QGWWLGFLISSVA  205 (478)
Q Consensus       193 -~~~~~~f~i~~~~  205 (478)
                       .-||..|.+.++.
T Consensus       221 d~vWRl~~glg~vp  234 (538)
T KOG0252|consen  221 DGVWRIIFGLGAVP  234 (538)
T ss_pred             HHHHHHHHHHHHHH
Confidence             2388888765544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.17  E-value=7e-10  Score=114.33  Aligned_cols=146  Identities=15%  Similarity=-0.000  Sum_probs=107.5

Q ss_pred             HHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 011743           30 GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH  109 (478)
Q Consensus        30 ~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~  109 (478)
                      ..+.+..+++.|+.+ .|.++.+.+...+...++..++.++.|+++|| +|||+.+..+.++..++.++.....      
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~------  317 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIP------  317 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHc------
Confidence            334466788888876 59999999999999999999999999999999 8999999988877666554443221      


Q ss_pred             CCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011743          110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (478)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  189 (478)
                                 ......+....+..+.+..+..+..+.++.|.+|+++      |++++++.+...++|..++|.+.|++
T Consensus       318 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        318 -----------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             -----------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence                       0122222222222222333334556678899999887      99999999999999999999999999


Q ss_pred             hccchhHHHHH
Q 011743          190 FIDQGWWLGFL  200 (478)
Q Consensus       190 ~~~~~~~~~f~  200 (478)
                      .+..|+....+
T Consensus       381 ~~~~g~~~~~~  391 (426)
T PRK12307        381 GITMGLGAALT  391 (426)
T ss_pred             HHcccHHHHHH
Confidence            98888665433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.17  E-value=9e-10  Score=112.10  Aligned_cols=167  Identities=10%  Similarity=-0.020  Sum_probs=130.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+.+++..++....+.....+++.|+. +.|.+..+.|.+.++..+...+..++.|++.|| +|+|+.+..+.+..++
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence            44566666666666666667788888985 589999999999998889999999999999999 8999999999988888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH-H
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-F  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~-~  173 (478)
                      +.+++...+                   +.+.+++..++.|++.+...+....++.+. ++++      +++.++.+. .
T Consensus       283 ~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~  336 (382)
T PRK11128        283 RWGLMGSTT-------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSAL  336 (382)
T ss_pred             HHHHHHhhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHH
Confidence            776665443                   677778889999999998888888887776 4444      567788776 4


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~  210 (478)
                      ...+|..+||.++|.+.+..|+ ..|+..+++.++++
T Consensus       337 ~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        337 AMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            4567889999999999998887 45555555444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.16  E-value=1.9e-09  Score=110.51  Aligned_cols=171  Identities=12%  Similarity=-0.005  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      ++...+...+....++......|.|+.+++|+++.+.+.......++..++.++.|+++|| +|+|+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            4544554445555555555667888888899999999988888888888999999999999 899999999988888877


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .+........              ..+...++++.++.++|.+...+......... ++++      +++..+.++....
T Consensus       296 ~~~~~~~~~~--------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~~  354 (406)
T PRK15402        296 LLAALATVIS--------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLSM  354 (406)
T ss_pred             HHHHHHHHcc--------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHHH
Confidence            7766542100              12455667888889999988777766655433 3355      8999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~  209 (478)
                      +|..+|+.+.+.+.+..++....+...+..++.
T Consensus       355 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        355 LIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            999999999999877767665555444444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.16  E-value=7.6e-10  Score=112.64  Aligned_cols=169  Identities=15%  Similarity=0.036  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+..+...++...+.+....+++.|+.+.+|+++.+.+...+...++..++.++.|++.|| +|+|+.+.++..+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHH
Confidence            4444444455555555556677888888899999999999999999999999999999999 899999999888888877


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCC-CCCChhhhhhhhhHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQF-DENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~-~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      ++......                  +.+...+..++.++|.+...+.......+.. +++.      ++.+  ......
T Consensus       280 ~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~  333 (382)
T PRK10091        280 LMLFFFGG------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAF  333 (382)
T ss_pred             HHHHHHHh------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHH
Confidence            65543321                  3334445555566665544443333333333 3222      3333  335567


Q ss_pred             HHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHH
Q 011743          176 TLAAMIGVTAIVYVFID-QGWWLGFLISSVATLIGLIA  212 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~~-~~~~~~f~i~~~~~~~~~~~  212 (478)
                      ++|..+||.++|++.+. .+|+..+.+.++..++.+..
T Consensus       334 ~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        334 NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            89999999999998874 68999999887666544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.15  E-value=4.8e-10  Score=115.41  Aligned_cols=164  Identities=8%  Similarity=-0.121  Sum_probs=116.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHccc-ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHH-HHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC-LVFGTLEV   93 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~-~~~~~~~~   93 (478)
                      ..|...+..++....++++..++|.|+++ ..|++..+++.......++..++.+++|+++|| +|||+.. ....++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHH
Confidence            45666777788888899999999999987 357888999999999999999999999999999 8877753 33333444


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++..+. ...                 . +....+.+..+.++|.....+.......|.+|+++      |++++++.+.
T Consensus       322 ~~~~~~-~~~-----------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~  376 (412)
T TIGR02332       322 AGWLLA-SAT-----------------D-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINA  376 (412)
T ss_pred             HHHHHH-Hhc-----------------C-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHH
Confidence            333222 111                 0 11111222223333333333334455567788777      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccch-hHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVA  205 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~  205 (478)
                      ..++|..++|.+.|.+.+..| |+..|.+.+++
T Consensus       377 ~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       377 TGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999988764 99998876554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.15  E-value=1.2e-09  Score=111.54  Aligned_cols=175  Identities=14%  Similarity=0.050  Sum_probs=127.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHH-HHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      ..+..+...++...+......+.+.|+++ .|++++++|.+...... ...++.+++|++.|| +|+||.+..+..+.++
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGS  286 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence            35556666667777777777888888875 79999999999888765 556678999999999 8999999888776644


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCC-CChhhhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE-NDPKGAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~-~~~~~~~~r~~~~~~~~~  173 (478)
                      .......... ...            ..+....+....+.+++.|...+...+...+..++ +.      +++.+++.+.
T Consensus       287 ~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  347 (390)
T TIGR02718       287 LALLWFAQAA-FWL------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQS  347 (390)
T ss_pred             HHHHHHHHHH-ccc------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHH
Confidence            3333222110 000            01223334444555666777777777777777665 44      7999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~  211 (478)
                      ..++|..++|.++|++.+..||+..|.+.+++.+++++
T Consensus       348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999999999988999999887776665544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.15  E-value=3.7e-10  Score=113.06  Aligned_cols=154  Identities=13%  Similarity=0.021  Sum_probs=128.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhH-HHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANG-ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~-~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      |..+.++...++....+++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.|| +|||+.+..+..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence            345556666666666666666 677888877799999999999999999999999999999999 899999988877777


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++..+.....                 . +.+.+++..++.|++.+...+...+++.|.+|+++      |++.+++.+.
T Consensus       289 ~~~~~~~~~~-----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  344 (365)
T TIGR00900       289 LAILVVGLTP-----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFS  344 (365)
T ss_pred             HHHHHHHhhc-----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence            7666555442                 1 35667788889999999999999999999999877      8999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccc
Q 011743          174 ATTLAAMIGVTAIVYVFIDQ  193 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~  193 (478)
                      ..++|..++|.++|++.+..
T Consensus       345 ~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       345 LSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999987754

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.14  E-value=9.2e-08  Score=99.80  Aligned_cols=183  Identities=13%  Similarity=-0.032  Sum_probs=114.0

Q ss_pred             chhHHHHHHHHHHHH-HHHHhHHHHHHHcccccC----------------------------Cch-hhHhHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENM-GFIANGISMVLYFKNEMH----------------------------FDI-AGASNTLTNFFGST   64 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~-~~~~v~~~l~~yl~~~lg----------------------------~~~-~~~~~~~~~~~~~~   64 (478)
                      |+++.=.+-.+.++. ....+..++|.|+++...                            .+. .-.+..+++..+..
T Consensus         4 ~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~~   83 (477)
T PF11700_consen    4 REIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLLQ   83 (477)
T ss_pred             hHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHHH
Confidence            444544555555552 334455677788776431                            111 22357788889999


Q ss_pred             HHHhhHHHHHhhhccchhHHHHHHHH-HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccc
Q 011743           65 FLLCLVGGFISDTYLSRFATCLVFGT-LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRG  143 (478)
Q Consensus        65 ~~~~~~~G~laDr~~Gr~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~  143 (478)
                      .+..|+.|-++|+ -|+||-++.... +..+..+++....                 ..+.....+..++..++.+....
T Consensus        84 all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~-----------------~~~~~~~~~l~iia~v~~~~~~v  145 (477)
T PF11700_consen   84 ALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVS-----------------PGQWWLALVLFIIANVGYEASNV  145 (477)
T ss_pred             HHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhC-----------------cchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 787777766654 4445555555443                 12444444444455577777778


Q ss_pred             cccccccCCCCCCChhhhhh---------------------hhhHHHHHHHHHHHHHHHHHHHHHhhhc--------cch
Q 011743          144 TLPALGAGQFDENDPKGAKA---------------------LASYFNFYLFATTLAAMIGVTAIVYVFI--------DQG  194 (478)
Q Consensus       144 ~~~~~i~~~~~~~~~~~~~~---------------------r~~~~~~~~~~~~~g~~~~p~i~~~l~~--------~~~  194 (478)
                      ...+++.|..++++. .++.                     |++..++-+...++|+.+.-.+.-.+..        ..+
T Consensus       146 fyna~LP~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~  224 (477)
T PF11700_consen  146 FYNAYLPDLARPEPR-VRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWA  224 (477)
T ss_pred             HHHHHhHhhcCCChh-hhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchh
Confidence            888999999887752 1111                     2788888888888888877665544321        133


Q ss_pred             hHHHHHHHHHHHHHH-HHHHHhc
Q 011743          195 WWLGFLISSVATLIG-LIALAIG  216 (478)
Q Consensus       195 ~~~~f~i~~~~~~~~-~~~~~~~  216 (478)
                      .|..+.+.++-.++. +..+.+.
T Consensus       225 ~r~~~~~~a~ww~vfsiP~~~~~  247 (477)
T PF11700_consen  225 IRVAFLIVALWWLVFSIPLFLWL  247 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhC
Confidence            577777777665433 3334443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.13  E-value=8.5e-10  Score=112.78  Aligned_cols=173  Identities=12%  Similarity=0.008  Sum_probs=128.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHccccc---CCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEM---HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      ..+.+++..++....+.......+.|+.+.+   +.+..+.+.+.++..+...++.+..|++.|| +|||+.+.++.++.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHH
Confidence            3444444444444444445456777777655   5566778888888888999999999999999 89999999998888


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH-H
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-Y  171 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~-~  171 (478)
                      +++..+...+.                   +.+.+++..++.+++.+........+..+..+++.      +++..+. +
T Consensus       295 ~l~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~  349 (396)
T TIGR00882       295 SVRIIGSSFAT-------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGF  349 (396)
T ss_pred             HHHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHH
Confidence            88776655432                   55666777888888876665555566666666555      6666665 4


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      ....++|..++|.++|++.+..||+..|.+.+++.++..+...
T Consensus       350 ~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       350 QFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999988999999998887766555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.12  E-value=6e-10  Score=115.17  Aligned_cols=161  Identities=16%  Similarity=0.066  Sum_probs=123.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+.+++..++...+++....+.+.|.+..+| +..+.+.+.....++..++.++.|+++|| +|||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            445666677777777776655555666666666 56677788888889999999999999999 8999999999888888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~-~~~~r~~~~~~~~~  173 (478)
                      +.+.+....                  .+...+++..++.+++.+...+...++++|..|.++-+ .++.++..++++..
T Consensus       300 ~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  361 (437)
T TIGR00792       300 GYLIFFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF  361 (437)
T ss_pred             HHHHHHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence            776665432                  14455667778889999998999999999987743211 11126889999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchh
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      ..++|..+++.+.|++.+..||
T Consensus       362 ~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       362 VRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999988765555

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.11  E-value=8e-10  Score=116.53  Aligned_cols=154  Identities=11%  Similarity=0.019  Sum_probs=129.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |.....++..++....+++...+++.|+++.+|+++.++|.......++..++.+++|++.|| +|+|+.+..+.++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence            345556666777777788888899999999999999999999999999999999999999999 8999999989888888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++.....                ..+.+..+...++.|+|.|...+.....+.+..|+++      ++.+.++++..
T Consensus       338 ~~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  395 (495)
T PRK14995        338 SFYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMA  395 (495)
T ss_pred             HHHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHH
Confidence            7766554321                1134455677888999999998888888888888877      89999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 011743          175 TTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~  191 (478)
                      .++|..+|+.+.+.+.+
T Consensus       396 ~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        396 YELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987754

>TIGR01272 gluP glucose/galactose transporter

Probab=99.11  E-value=1.6e-09  Score=107.13  Aligned_cols=161  Identities=10%  Similarity=-0.037  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHccc--ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKN--EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~--~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      ..+..++..++-...-.++..+++.|+.+  ++|+++.+++...+.+..+..++.+++++++|| +|+||++.++..+.+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence            34444455555444555677899999975  479999999999999999999999999999999 899999998888777


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.++.....                   +.. ...+..+.|++.+.+.|+..+...+.+|++.       +++.++. .
T Consensus       220 ~~~~l~~~~~-------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~-~  271 (310)
T TIGR01272       220 LLSIGAALTH-------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL-C  271 (310)
T ss_pred             HHHHHHHHcC-------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH-H
Confidence            7665444322                   111 2235557899999999999999999888543       3344443 5


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA  205 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~  205 (478)
                      ...+|+.+.|.+.|.+.+..|.+.+|++..++
T Consensus       272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       272 LAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            66799999999999999988999988755444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.10  E-value=1.2e-08  Score=105.57  Aligned_cols=169  Identities=20%  Similarity=0.089  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHhH---HHHHHHcccccCCchhhH-hHHHHHH----HHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANG---ISMVLYFKNEMHFDIAGA-SNTLTNF----FGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~---~~l~~yl~~~lg~~~~~~-~~~~~~~----~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      +....++..++++...   .....+.....+.+.... +......    .+...+..++-|.++|| +|||..+.+.++.
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHH
Confidence            3344444444444444   555566665555544432 3333333    57888899999999999 8999999999998


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHh--ccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL--GCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi--g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ..+..+.+.+.                    . +++++   +.++  +.+...+...++++|....++      |...++
T Consensus       102 ~~l~~~~~~~~--------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~g  151 (463)
T KOG2816|consen  102 TILPALCLLFQ--------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIG  151 (463)
T ss_pred             HHHhHHHHHHH--------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHH
Confidence            88887777654                    2 22322   3333  334456677889999988877      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcc
Q 011743          170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPF  219 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~  219 (478)
                      +.......+..++|..++.+.+..|+-..|+++.+..+++.+...+..|+
T Consensus       152 ll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  152 LLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence            99998999999999999999999999999999998888887766665443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.09  E-value=3.8e-09  Score=110.40  Aligned_cols=177  Identities=10%  Similarity=-0.019  Sum_probs=124.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHH--------H
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC--------L   86 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~--------~   86 (478)
                      +.+|...+..++....++....++|.|+++++|++..+++....+..++..++.+++|+++|| +++||..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence            457788888888889999999999999999999999999999999999999999999999999 6654321        1


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhh
Q 011743           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (478)
Q Consensus        87 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~  166 (478)
                      .+......+..++.....                ..+....++...+.+.+.+...+.......|..|. .      ++.
T Consensus       340 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~  396 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPYL----------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGF  396 (465)
T ss_pred             HHHHHHHHHHHHHHHHHc----------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHH
Confidence            111111111111111110                01233334444555555555555555555565543 4      799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHHHHHHHHHHHh
Q 011743          167 YFNFYLFATTLAAMIGVTAIVYVFID---QGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       167 ~~~~~~~~~~~g~~~~p~i~~~l~~~---~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ..++.....++|+.++|.+.|++.+.   .+|+..|++.++..+++.+....
T Consensus       397 ~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       397 IKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            99999999999999999999988754   34889999888877777665544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.07  E-value=1.1e-09  Score=114.85  Aligned_cols=156  Identities=13%  Similarity=0.119  Sum_probs=128.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+...+..++..+.+++...++|.|+++.+|+++.+++.......++..++.++.|++.|| +|||+.+.++..+.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence            345555666677778888888899999999999999999999999999999999999999999 8999999999888888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +..++..... +              ..+.+.++...++.|+|.+...+.......+.+|+++      |+++.++.+..
T Consensus       334 ~~~~~~~~~~-~--------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  392 (485)
T TIGR00711       334 GFYWRAFTFT-P--------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFT  392 (485)
T ss_pred             HHHHHhccCC-C--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHH
Confidence            8776652210 0              1244556667888999999888777777778888777      89999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 011743          175 TTLAAMIGVTAIVYVFID  192 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~  192 (478)
                      .++|..+|+.+.+.+.++
T Consensus       393 ~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       393 RQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.06  E-value=5.4e-08  Score=95.48  Aligned_cols=154  Identities=14%  Similarity=0.067  Sum_probs=106.5

Q ss_pred             ccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccch
Q 011743           43 KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGA  122 (478)
Q Consensus        43 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (478)
                      .++.|++.+|++.+.........+..++.|.++|| +||||..+...++++++.+....                    .
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~--------------------~  119 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS--------------------S  119 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc--------------------c
Confidence            35799999999999999999999999999999999 89999999999999998764432                    2


Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCCC-hhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhhccch--hHHH
Q 011743          123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND-PKGAKALASYFNFYL-FATTLAAMIGVTAIVYVFIDQG--WWLG  198 (478)
Q Consensus       123 ~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~-~~~~~~r~~~~~~~~-~~~~~g~~~~p~i~~~l~~~~~--~~~~  198 (478)
                      +...++++|++.|++......+.-+.......+++ |++.  .+.-++... ..+.+-++.+-.++-++.+..+  -..+
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaP  197 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAP  197 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcch
Confidence            78899999999999999998877665443322221 1111  333333322 1122222333333334444444  3778


Q ss_pred             HHHHHHHHHHHHHHHHhcCcc
Q 011743          199 FLISSVATLIGLIALAIGKPF  219 (478)
Q Consensus       199 f~i~~~~~~~~~~~~~~~~~~  219 (478)
                      |..+.++.+++.++....+++
T Consensus       198 F~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  198 FDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHHHHHHHHHHHHHHHhcccc
Confidence            888888777777665555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.06  E-value=2.9e-09  Score=112.20  Aligned_cols=172  Identities=17%  Similarity=0.069  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      +...+...++.++....+...+|.+.++++|.+....|++++++.++..++.++.+++.+| +++++.+..+.++++++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHH
Confidence            4444444455555555667788899999999999999999999999999999999999999 899999999998888887


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      +.++++.                   +.+..++..++.|++.........+.+.+..|++.      |+|.++++....+
T Consensus       299 ~~lal~~-------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~  353 (524)
T PF05977_consen  299 LLLALSP-------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFF  353 (524)
T ss_pred             HHHhcch-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHH
Confidence            7777664                   66777788889999988888888899999999888      9999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .+..+|..+.|.+.+.+|-+..+.++++..+++.++..
T Consensus       354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888776666655544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.06  E-value=6.3e-09  Score=106.63  Aligned_cols=173  Identities=17%  Similarity=0.157  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHH-HHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF-GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      .+.+++..++...+......+.+.|+.+++|+++.+.+.+..... ++..++.+++|++.|| +||||.+..+.++..+.
T Consensus       211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~  289 (402)
T PRK11902        211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVS  289 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            343444444444333323344556777889999999999887654 4578889999999999 89999988777776665


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHH----HHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLY----LYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+.+......               ..+.+.+++..+    ..+++.+...+....++.+.+|.++      +    +.+
T Consensus       290 ~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~  344 (402)
T PRK11902        290 NLGYWVLAVT---------------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALL  344 (402)
T ss_pred             HHHHHHHHhc---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHH
Confidence            5443321110               013344444443    4555666667777777887777443      3    344


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ....++|...++.++|.+.+..||+..|.+.+++.++++++.+.
T Consensus       345 ~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        345 SALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            44456677656668999999999999999888877776655543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.05  E-value=6.1e-09  Score=109.05  Aligned_cols=159  Identities=8%  Similarity=-0.100  Sum_probs=113.3

Q ss_pred             HHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011743           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (478)
Q Consensus        35 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  114 (478)
                      ..+.|.+ .+++|++....++......+...++.+++|+++|| +|||+.++.+.++.+++.+++......         
T Consensus       291 ~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~---------  359 (479)
T PRK10077        291 LYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYT---------  359 (479)
T ss_pred             HHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhc---------
Confidence            3344444 45688888877877778888899999999999999 899999999999988888776544210         


Q ss_pred             CCccccchhHHHHHHHHHHHHhcccc-ccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-----
Q 011743          115 KSSCLKGAIAAYFYGSLYLYSLGCGG-NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY-----  188 (478)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~gig~g~-~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~-----  188 (478)
                            .........+..+.+++.+. ..|...++++|.+|+++      |++++++.+...++|..+++.+.+.     
T Consensus       360 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~  427 (479)
T PRK10077        360 ------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNS  427 (479)
T ss_pred             ------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence                  00111223344444444443 34777899999999887      9999999998888888877655543     


Q ss_pred             -hhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          189 -VFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       189 -l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                       +.+..+|+..|++.++..+++.++.+..
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        428 WLVAHFHNGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             chhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence             3456788888888777666665554443

>TIGR00895 2A0115 benzoate transport

Probab=99.05  E-value=1.8e-09  Score=109.48  Aligned_cols=146  Identities=16%  Similarity=0.088  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+.+.+..++....++.+..+++ ++.+++|.+..+++.......++..++.++.|+++|| +|||+.+....+......
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  329 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAV  329 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHH
Confidence            34445555666677777777777 6677899999999999999999999999999999999 899855544433333332


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .+.....                   +....++..++.|++.+...+...+++.|.+|+++      |++++++.+...+
T Consensus       330 ~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  384 (398)
T TIGR00895       330 LVGSTLF-------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGR  384 (398)
T ss_pred             HHHHHhh-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHH
Confidence            2222121                   44556677788999999999999999999999877      8999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 011743          177 LAAMIGVTAIVYV  189 (478)
Q Consensus       177 ~g~~~~p~i~~~l  189 (478)
                      +|..+||.++|++
T Consensus       385 ~g~~~g~~~~G~l  397 (398)
T TIGR00895       385 LGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHhHHhc
Confidence            9999999998875

>PRK10133 L-fucose transporter; Provisional

Probab=99.04  E-value=4.8e-09  Score=108.83  Aligned_cols=166  Identities=13%  Similarity=0.038  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHc-ccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           18 TFVFVLSALENMGFIANGISMVLYF-KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        18 ~~l~~~~~~~~~~~~~v~~~l~~yl-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      +...+..++...+.++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.|| +||||++..+.++.+++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence            3444555566666666777888886 56799999999999999999999999999999999 899999998877776655


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .+.....                   +. ..+....+.|+|.+...|+..+...+.+|++.       +.+.++.. ...
T Consensus       340 ~~~~~~~-------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~-~~~  391 (438)
T PRK10133        340 LISAFAG-------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIV-MTI  391 (438)
T ss_pred             HHHHHcC-------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHh-HHh
Confidence            4443321                   21 22455678999999999999999999987543       34444443 244


Q ss_pred             HHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHH
Q 011743          177 LAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIA  212 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~  212 (478)
                      +|+.++|.+.|.+.+..| -+..|++..+..+..+..
T Consensus       392 ~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        392 IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            678888899999988887 788888766654444333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.03  E-value=1.7e-09  Score=108.80  Aligned_cols=162  Identities=15%  Similarity=0.107  Sum_probs=117.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHH--HH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT--LE   92 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~--~~   92 (478)
                      +.++.+.+..++.....+++..+++.|+++++|++..+++.....+.++..++.++.|+++||+.+||+.......  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            3456666777777777778888999999999999999999999999999999999999999983333433322211  11


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++........                 ..+.....+..++.|+......+....+..|.+|+++      |+++.++..
T Consensus       296 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  352 (379)
T TIGR00881       296 IVSLLVYWLNP-----------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVG  352 (379)
T ss_pred             HHHHHHHhcCc-----------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHH
Confidence            12211111110                 1133444455566666555555566678899999888      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHH
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGF  199 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f  199 (478)
                      ...++|..++|.+.|.+.+..||+..|
T Consensus       353 ~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       353 FFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            999999999999999999988988754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.03  E-value=1.1e-08  Score=104.69  Aligned_cols=166  Identities=13%  Similarity=0.052  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      .++......++...+.++...++++++.+++|++..+.+.+...+.++..++.++.|++.|| .+|+ .+..+..+..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~-~l~~~~~~~~~~  294 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKL-ALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-HHHHHHHHHHHH
Confidence            35555455555556666666676554556789999999999999999999999999999999 6544 444444443333


Q ss_pred             -HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           96 -LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        96 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                       ..+....+                   +.+.+.+..++.|++.+...+...+++.+..|+ +      +++..+..+..
T Consensus       295 ~~~l~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~  348 (394)
T PRK10213        295 ALVLTLWGS-------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQVAV  348 (394)
T ss_pred             HHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHHHHH
Confidence             33333222                   456666778889999999999888888888873 3      34566666677


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG  209 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~  209 (478)
                      .++|..+||.++|++.+..|++..+...++..++.
T Consensus       349 ~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        349 IQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            78999999999999999889988888776654433

>TIGR00896 CynX cyanate transporter

Probab=99.03  E-value=2.9e-09  Score=107.03  Aligned_cols=153  Identities=14%  Similarity=0.004  Sum_probs=118.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc-chhHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFATCLVFGTLEV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~~~~~~~~~   93 (478)
                      +..+.+.+...+....++++..++|.|+++ .|.+..+.+.+.+.+.++..++.++.|+++|| + +||+.+.++.++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence            445655666666777788888899999875 79999999999999999999999999999999 7 56777777878887


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.+.+.....                  +...  ....+.|++.|...|...+.+.+..++++     .++..+++.+.
T Consensus       275 ~~~~~~~~~~~------------------~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~  329 (355)
T TIGR00896       275 VGLCGLLFAPM------------------HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQS  329 (355)
T ss_pred             HHHHHHHHhhh------------------hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHH
Confidence            77766654421                  1111  23567899999988887777766655432     16788888888


Q ss_pred             HHHHHHHHHHHHHHhhhccch
Q 011743          174 ATTLAAMIGVTAIVYVFIDQG  194 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~  194 (478)
                      ..++|..++|.+.|++.+..|
T Consensus       330 ~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       330 IGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999988665

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.01  E-value=3.3e-08  Score=97.79  Aligned_cols=85  Identities=12%  Similarity=-0.002  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc----------
Q 011743          123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID----------  192 (478)
Q Consensus       123 ~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~----------  192 (478)
                      +...++++.++.|.|.+..+++.++++++..++++      +.+.+++......+|..++|.+++.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            78889999999999999999999999999998887      88899999999999999999999977621          


Q ss_pred             ------chhHHHHHHHHHHHHHHHHHH
Q 011743          193 ------QGWWLGFLISSVATLIGLIAL  213 (478)
Q Consensus       193 ------~~~~~~f~i~~~~~~~~~~~~  213 (478)
                            .+|++++++.+.+..+..+++
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  468899886655544443333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.01  E-value=5e-09  Score=110.70  Aligned_cols=167  Identities=13%  Similarity=0.067  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHhHHHHHHHcccccCCchhhHhH------------HHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           24 SALENMGFIANGISMVLYFKNEMHFDIAGASN------------TLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        24 ~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      .++..+.+|++..+.|.+++ +.|++..+++.            ...+..++..++.++.++++|| +|||++++++.++
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~  374 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFI  374 (502)
T ss_pred             HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHH
Confidence            34456677888888888775 67876543221            1223334555677889999999 8999999988888


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+++.+++......               ......+....+...++..+..+....+.+|.+|.+.      |+++.++.
T Consensus       375 ~~~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~~  433 (502)
T TIGR00887       375 LTVLFFVLGFAYNH---------------LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGIS  433 (502)
T ss_pred             HHHHHHHHHHHHHh---------------cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHHH
Confidence            77776655543210               0011111111111222222334556677899999988      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc----------chhHHHHHHHHHHHHHHHHHH
Q 011743          172 LFATTLAAMIGVTAIVYVFID----------QGWWLGFLISSVATLIGLIAL  213 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~----------~~~~~~f~i~~~~~~~~~~~~  213 (478)
                      +...++|++++|.+.+++.+.          .++...|++.++..+++.+..
T Consensus       434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       434 AASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            999999999999999988763          345567777666666554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.01  E-value=5.7e-09  Score=107.01  Aligned_cols=154  Identities=14%  Similarity=0.065  Sum_probs=113.2

Q ss_pred             HhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011743           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (478)
Q Consensus        33 ~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  112 (478)
                      ....++|.|+++..| ++.+.+.+.+...+.........+++.||+++.++.+..+.++.+++..++...+         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            344577888877666 6778888887777666555544455555437777777788888887776665543         


Q ss_pred             CCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011743          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (478)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  192 (478)
                                +...+.+...+.++|.+...|...+++.|..|+++      |++.++++....++|..+||.++|++.+.
T Consensus       296 ----------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        296 ----------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence                      44555666777888888888999999999999888      99999999999999999999999999875


Q ss_pred             c---h-hHHHHHHHHHHHHHHHHH
Q 011743          193 Q---G-WWLGFLISSVATLIGLIA  212 (478)
Q Consensus       193 ~---~-~~~~f~i~~~~~~~~~~~  212 (478)
                      .   + ....|.+.+++.+++.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        360 GKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HhhcCCcchHHHHHHHHHHHHHHH
Confidence            3   2 345665555555545444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.01  E-value=1e-08  Score=105.87  Aligned_cols=186  Identities=12%  Similarity=-0.008  Sum_probs=130.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +.+|.+.+..++...+|.+...++|.|+++++  +.........+..+...+..|++|+++|| +|+||++.++.+..++
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHH
Confidence            45888888888887787778889999988765  33333333455678899999999999999 8999999999887777


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCC----------C-----hh
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEN----------D-----PK  159 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~----------~-----~~  159 (478)
                      .........  |..       +    ..+...+.+..+...++.|.-..++..++.+.+|++          +     .+
T Consensus       329 ~~~~~~l~l--p~~-------~----~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~  395 (462)
T PRK15034        329 FSALLFLTL--PGT-------G----SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQRE  395 (462)
T ss_pred             HHHHHHHHh--ccc-------c----ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhH
Confidence            664433322  100       0    125666666666666777777778888888888741          0     01


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHHhc
Q 011743          160 GAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       160 ~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .|+..+...|+......+|+.+-|.+.|...+.. ++...|+...+..++++++.+..
T Consensus       396 ~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        396 AVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            1223567777888888888888887777665543 48888888888888777766543

>PRK10054 putative transporter; Provisional

Probab=99.01  E-value=4.7e-09  Score=107.40  Aligned_cols=170  Identities=15%  Similarity=-0.024  Sum_probs=126.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcc--cccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFK--NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~--~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      |..+...+..++..+.+.....+++.|+.  ++.+.+....+.+.....+......+..|++.|| .++|+.+..+.++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHH
Confidence            34455555556555555545455666654  3456667777888888888777888899999999 89999999998888


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++...+....                  .+.+.+.++..+.++|.+...|...+.+.+..|++.      |+++++...
T Consensus       285 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~  340 (395)
T PRK10054        285 VIGLVGFIFSG------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS  340 (395)
T ss_pred             HHHHHHHHHcc------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH
Confidence            88876665432                  145556677889999998888988899999999877      788887543


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL  210 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~  210 (478)
                       ...+|..+||.++|.+.+..|....|.+.++...++.
T Consensus       341 -~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  377 (395)
T PRK10054        341 -LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW  377 (395)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence             5668999999999999998898888877555444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.01  E-value=1.5e-08  Score=102.52  Aligned_cols=162  Identities=12%  Similarity=0.024  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+...+...+....++....+.+.|+++++|.++.+++.+.....++..++.++.|++.|| +|||+.+..+..+..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSA  286 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            4444555555566666777778888888999999999999999999999999999999999 899999999888888777


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .++......+              ......+++...+.|++.+...+...+...|..| ++      ++++.++......
T Consensus       287 ~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~  345 (385)
T TIGR00710       287 VLLEITAILG--------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLRL  345 (385)
T ss_pred             HHHHHHHHhc--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHHH
Confidence            6665432100              0134445556677889889888888888888776 44      7888888876665


Q ss_pred             H-HHHHHHHHHHhhhccchhHHHHHH
Q 011743          177 L-AAMIGVTAIVYVFIDQGWWLGFLI  201 (478)
Q Consensus       177 ~-g~~~~p~i~~~l~~~~~~~~~f~i  201 (478)
                      . |...+|. .+.+.+..+|...+..
T Consensus       346 ~~g~i~~~~-~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       346 VLGAIVGYL-VSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHH-HHhccccChHHHHHHH
Confidence            4 5555555 4455444445444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.98  E-value=8.2e-09  Score=119.80  Aligned_cols=164  Identities=13%  Similarity=-0.010  Sum_probs=130.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchh-hHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA-GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      .++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++|| +++++.+.++.++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHH
Confidence            344444445555555566777889999999999999 99999999999999999999999999 8999999888888877


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +.+++....                   +.+.+++..++.|++.++..+...+++.+..|++.      |++++++.+..
T Consensus       312 ~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~  366 (1146)
T PRK08633        312 SLFLLPTAP-------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFL  366 (1146)
T ss_pred             HHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHH
Confidence            776666543                   55667777888999999999999999999999888      99999999999


Q ss_pred             HHHHHHHHHHHHHhhhc-cchhHHHHHHHHHH
Q 011743          175 TTLAAMIGVTAIVYVFI-DQGWWLGFLISSVA  205 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~-~~~~~~~f~i~~~~  205 (478)
                      .++|..+++.+++.+.. .+++...|++.+.+
T Consensus       367 ~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        367 QNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999888887776643 23455555554443

>PRK09848 glucuronide transporter; Provisional

Probab=98.97  E-value=6.2e-09  Score=108.32  Aligned_cols=163  Identities=13%  Similarity=0.070  Sum_probs=123.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+...+..++...+++......+.|+++.+|.+....++......+...++.++.++++|| +|+|+++.++.++.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            445556666667777777666677778888899877766665555567788899999999999 8999999999998888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~-~~~~r~~~~~~~~~  173 (478)
                      +.+++.+..                 ..+.+.+++..++.++|.+...+...++.+|..|.++-+ .++..+..++.+..
T Consensus       307 ~~~~~~~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        307 GYLLFFWVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             HHHHHHHcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence            877665432                 125566677788899999999999999999988764321 11225888889889


Q ss_pred             HHHHHHHHHHHHHHhhhccchh
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      ...+|..+|+.+.+.+.+..||
T Consensus       370 ~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        370 TRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999998877544443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.96  E-value=6.3e-09  Score=103.43  Aligned_cols=176  Identities=13%  Similarity=0.089  Sum_probs=148.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |.+...++..++-+=+-.++..+...|-..++|++..+..++...-++...+++++.|+|.|| +|.|+++.+++++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHH
Confidence            467778888999998989999999999999999999999999999999999999999999999 9999999999998887


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      ..+......                   ....+++.-.+.|...|..++..-++.++.+|+++      -++.|+++...
T Consensus       331 ~~~~~~~~~-------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyalt  385 (438)
T COG2270         331 AALYLIFLE-------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALT  385 (438)
T ss_pred             HHHHHHHcc-------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhh
Confidence            766555432                   23344555578899999999999999999999988      78999999999


Q ss_pred             HHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHHhc
Q 011743          175 TTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ...+..+||.+.+.+.+.. +-|..+....++..+++++++..
T Consensus       386 gra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         386 GRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence            9999999999998887654 47777776666666666655443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.95  E-value=3.5e-08  Score=98.73  Aligned_cols=136  Identities=10%  Similarity=-0.021  Sum_probs=107.2

Q ss_pred             HHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011743           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (478)
Q Consensus        35 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  114 (478)
                      +..+.+|.++.+| +...+-|.+++|.+.+....+.+-|+.|| +|-|.+.+++.++..+|..+=.++.. |.+-     
T Consensus        64 ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~-p~v~-----  135 (480)
T KOG2563|consen   64 YAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSL-PFVP-----  135 (480)
T ss_pred             ehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccC-cccc-----
Confidence            3556678888888 77888999999999999999999999999 99999999999999999988777642 1110     


Q ss_pred             CCccccchhH--HHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011743          115 KSSCLKGAIA--AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       115 ~~~~~~~~~~--~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  191 (478)
                             ..+  ...+.+..+.+..+-.+...-+-+.+-||++++      |..+.....++..+|..++..+...+..
T Consensus       136 -------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  136 -------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             -------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence                   123  366677777777777777776777888999988      8888888777777777777776666543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.93  E-value=1.1e-08  Score=118.87  Aligned_cols=183  Identities=11%  Similarity=-0.098  Sum_probs=133.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |.++.+++..++..+.++++..++|.|+++.+|.+..+++++.+.+.++..++.++.|+++|+ .++++.+..+.++.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence            456666666677777777788899999999999999999999999999999999999999998 6777766666655555


Q ss_pred             HHHHHHHHhhcccCCCCCC--CCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDC--GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      +.+.+.+.. .....++.+  .....-...+.+.++++.++.|++.+...+...+++.+.+|++.      |+++++..+
T Consensus       304 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~  376 (1140)
T PRK06814        304 FGLDLAFAS-SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANN  376 (1140)
T ss_pred             HHHHHHhcc-cccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHH
Confidence            444333220 000000000  00000000245667788888999999999999999999999998      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHH
Q 011743          173 FATTLAAMIGVTAIVYVFI-DQGWWLGFLISSVA  205 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~-~~~~~~~f~i~~~~  205 (478)
                      ...++|..+++.+.+.+.. ..++...|++.+++
T Consensus       377 ~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        377 VLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999999988863 35666666655444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.93  E-value=3e-08  Score=102.52  Aligned_cols=162  Identities=15%  Similarity=0.143  Sum_probs=133.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |....+++..++...+........+.|.+..+|.+ ...+.+.....+...++.++.++++|| +|+||++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence            55677788888888888777778888888888877 566788888999999999999999999 8999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~-~~~~r~~~~~~~~~  173 (478)
                      +.+++.+..                 ..+.+.+++..++.|++.+...+...++++|..+.++.+ .+++.+..++.+..
T Consensus       303 ~~~~~~~~~-----------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~  365 (428)
T PF13347_consen  303 GFLLLFFLG-----------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF  365 (428)
T ss_pred             HHHHHHHHH-----------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence            988877664                 137788889999999999999999999999999865422 12235788888888


Q ss_pred             HHHHHHHHHHHHHHhhhccchh
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      ...+|..+++.+.+.+.+..||
T Consensus       366 ~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  366 FIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999988877554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.92  E-value=9.6e-09  Score=103.30  Aligned_cols=143  Identities=15%  Similarity=0.105  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHH-HHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF-GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      .+.+.+..++...+++.+..+++.|+++ +|++..+.+.+..+.. +...++.+++|+++|| +||||.+..+.++.+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence            5666666777788888889999999987 9999999998888766 5678999999999999 89999999898888777


Q ss_pred             HHHHHHH-hhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           96 LVMLTIQ-AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        96 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      ..+.... .+.+.  .+ .|      ..+.+.+....++.+++.+...+...+++.|.+|+++      |++.+++++..
T Consensus       289 ~~~~~~~~~~~~~--~~-~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~  353 (356)
T TIGR00901       289 NAGFVWLASNGHH--DG-IT------FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSL  353 (356)
T ss_pred             HHHHHHHHhcCcc--cc-cc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHH
Confidence            6655432 11000  00 00      0145667777888899999999999999999999999      99999998776


Q ss_pred             HH
Q 011743          175 TT  176 (478)
Q Consensus       175 ~~  176 (478)
                      .|
T Consensus       354 ~~  355 (356)
T TIGR00901       354 SA  355 (356)
T ss_pred             Hh
Confidence            55

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.91  E-value=5.6e-08  Score=99.62  Aligned_cols=189  Identities=13%  Similarity=0.043  Sum_probs=142.5

Q ss_pred             cccccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHccc-ccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccch-hHH
Q 011743            7 GIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR-FAT   84 (478)
Q Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-~~~   84 (478)
                      .+..|.+||.++...+..++..+.+..+.+..-.|+++ +.+-+.+-.|++.++..++..++.|+.|+...| .|+ |+-
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~P  104 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKP  104 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccC
Confidence            34557789999999999999999988888888889875 467777788999999999999999999999999 675 777


Q ss_pred             HHHHHHHHHHHHHHH-HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhh
Q 011743           85 CLVFGTLEVLSLVML-TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (478)
Q Consensus        85 ~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~  163 (478)
                      ++.|.++.++|.++. .++.. |              ....+.++++|++.|+|.|. .+..-+++++....++      
T Consensus       105 li~s~ii~~~g~llY~~l~~~-~--------------~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d------  162 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYV-P--------------NGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED------  162 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-c--------------cchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc------
Confidence            888999999999888 44431 1              12678889999999999655 4566788888777777      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhh----ccc---------hhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          164 LASYFNFYLFATTLAAMIGVTAIVYVF----IDQ---------GWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       164 r~~~~~~~~~~~~~g~~~~p~i~~~l~----~~~---------~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      |.++++....+..+|..+||.+...+.    +.+         -|..+-++.+++.++..+......+
T Consensus       163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~  230 (488)
T KOG2325|consen  163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK  230 (488)
T ss_pred             hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence            778888777766666666666554332    111         1445666677777666665554433

>TIGR00898 2A0119 cation transport protein

Probab=98.91  E-value=1.5e-08  Score=107.08  Aligned_cols=144  Identities=12%  Similarity=-0.046  Sum_probs=104.3

Q ss_pred             cccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchh
Q 011743           44 NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI  123 (478)
Q Consensus        44 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (478)
                      +.++.+....   .....+....+.++++++.|| +|||+.+.++.++.+++.+++.....                 ..
T Consensus       351 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~-----------------~~  409 (505)
T TIGR00898       351 GNLGGNIYLD---LFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV-----------------DL  409 (505)
T ss_pred             cccCCChHHH---HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC-----------------Cc
Confidence            3455554333   334456677788899999999 89999999999888887776665431                 12


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 011743          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISS  203 (478)
Q Consensus       124 ~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~  203 (478)
                      ....++..++.+++.+...+...++.+|.+|++.      |++++++......+|..++|.+.+ +. ..++..++++.+
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~  481 (505)
T TIGR00898       410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFG  481 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHH
Confidence            2333444455666666677888899999999887      899999999999999999999988 44 356777777777


Q ss_pred             HHHHHHHHHHHhc
Q 011743          204 VATLIGLIALAIG  216 (478)
Q Consensus       204 ~~~~~~~~~~~~~  216 (478)
                      +..+++.+...+.
T Consensus       482 ~~~~~~~~~~~~l  494 (505)
T TIGR00898       482 GLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHHHHHHcC
Confidence            7666665554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.91  E-value=5e-08  Score=99.80  Aligned_cols=160  Identities=9%  Similarity=-0.085  Sum_probs=118.0

Q ss_pred             HHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011743           28 NMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKS  107 (478)
Q Consensus        28 ~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~  107 (478)
                      ..........++.|+++.+|.++.+.|.+.....++..++.++.|++.|| .++++.+..+.. ..+...++....    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~-~~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGIL-MGLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHH-HHHHHHHHHHHh----
Confidence            34444555667778888899999999999999999999999999999999 899988877753 333333333222    


Q ss_pred             CCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011743          108 LHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIV  187 (478)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  187 (478)
                                     +.+...+..++.|++.+...++..+.+.+..|++.     .++++++..+...++|..++..+.+
T Consensus       292 ---------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~  351 (393)
T PRK11195        292 ---------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLYS  351 (393)
T ss_pred             ---------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHHH
Confidence                           45556677778999999988888888877544321     1688999999999999999999888


Q ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          188 YVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       188 ~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .+ +..|-+..+.+.+...+++..+..
T Consensus       352 ~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        352 LL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             HH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            66 456766666665555544444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.87  E-value=5.8e-08  Score=98.37  Aligned_cols=167  Identities=8%  Similarity=-0.039  Sum_probs=114.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchh---HHHHH-HHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF---ATCLV-FGT   90 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~---~~~~~-~~~   90 (478)
                      |..|.+.+..++....+|++..++|.|+++ .|++.. ++....+..+...   +..++++|| ..||   +.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHH
Confidence            557888888999999999999999999965 678765 5555555444444   445888888 6543   33222 333


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      +.++...+.....                   +....++...+.+++.....+...++.+|.+|++.      |+++.++
T Consensus       266 ~~a~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~  320 (368)
T TIGR00903       266 LIAAFFLALAFEL-------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGA  320 (368)
T ss_pred             HHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccch
Confidence            3333333332221                   22233444455666666666778899999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .+...++|+..+|.+.+.+..  +.+..|.+.++..+++.+..+
T Consensus       321 ~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       321 IGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998887763  666777776666666655543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.87  E-value=1e-08  Score=102.08  Aligned_cols=144  Identities=18%  Similarity=0.183  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCc-hhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFD-IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      .|.++...++..+.++....+++.|+.+++|.+ ..+.+.+..+..+...++.++.|+++|| +|+|+...+......++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHH
Confidence            444555666666677778899999999999999 8999999999999999999999999999 89988888888777776


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .+.+.....                ..+....++..++.|++.+...+...+++.|.+|+++      |+++.++.....
T Consensus       287 ~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  344 (352)
T PF07690_consen  287 ALGLLLLPF----------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIG  344 (352)
T ss_dssp             HHHHCCSHH----------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence            666654331                1245666677888999999999999999999999888      999999999999


Q ss_pred             HHHHHHHH
Q 011743          176 TLAAMIGV  183 (478)
Q Consensus       176 ~~g~~~~p  183 (478)
                      ++|..+||
T Consensus       345 ~~~~~igP  352 (352)
T PF07690_consen  345 SLGGIIGP  352 (352)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHCC
Confidence            99999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.85  E-value=4.9e-08  Score=94.99  Aligned_cols=174  Identities=11%  Similarity=0.025  Sum_probs=122.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHccccc--CC----chhhH-------------hHHHHHHHHHHHHHhhHHHHHh
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEM--HF----DIAGA-------------SNTLTNFFGSTFLLCLVGGFIS   75 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~l--g~----~~~~~-------------~~~~~~~~~~~~~~~~~~G~la   75 (478)
                      |....+-..-+.++++||+++.......+...  |.    .+.+.             -.=+.+.+++.+-+.+++|++.
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            44555666778899999999977665544322  11    11111             1122345677788889999999


Q ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCC
Q 011743           76 DTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE  155 (478)
Q Consensus        76 Dr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~  155 (478)
                      || +||||+|..+.+++.+..+++..+..           +    .....+++.+|+.+    .+.+.+.+.+..|.+|.
T Consensus       406 er-lGRKkTMal~l~~f~iflfll~~c~~-----------r----n~~tvllf~arafi----sg~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  406 ER-LGRKKTMALSLILFGIFLFLLTTCKT-----------R----NAYTVLLFTARAFI----SGAFQVAYVYTPEVYPT  465 (528)
T ss_pred             HH-hcchhHHHHHHHHHHHHHHHHHHhcC-----------c----chhHHHHHHHHHHH----hchheEEEEecCcccch
Confidence            99 99999999999999988877766531           0    11345566667665    44466788999999999


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          156 NDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       156 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ..      |+.+.|....+..+|+++.|.++  +...-+-..+.++...+++++.+...++
T Consensus       466 av------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  466 AV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             hh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence            88      99999999999999999999988  3333344455556666666666555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.2e-08  Score=107.20  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=150.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccc--hhHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS--RFATCLVFGTLE   92 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~   92 (478)
                      +..+.+++...+..++++.-..+++.|.+ ..|++..++..++++..+...++.++.|+++|+ ..  ++.+..++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence            56777888888999999988899999988 899999999999999999999999999999999 66  344455555566


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      .++.+.++.+.                   +.+.++..-.+.|++.|.+.+..+..+.|..+.++      ...++++..
T Consensus       376 gl~~~~~p~~~-------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l  430 (509)
T KOG2504|consen  376 GLARLFLPFAT-------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLL  430 (509)
T ss_pred             HHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHH
Confidence            66665666554                   66777888888999999988888889999999988      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhcC
Q 011743          173 FATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGK  217 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~  217 (478)
                      ....++..+||.++|++.+..+ |...|+.+++..+++.+.+++..
T Consensus       431 ~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  431 LFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999888776 99999999999888887766654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.81  E-value=1.6e-07  Score=95.85  Aligned_cols=70  Identities=10%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             HhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 011743           33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA  103 (478)
Q Consensus        33 ~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~  103 (478)
                      ....+.+.|+++++|++..+.+.......+...++.++.|++.|| +|||+.+.++..+..++.+++....
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555677888899999999999999999999999999999999 8999999999988888877776553

>PRK09669 putative symporter YagG; Provisional

Probab=98.80  E-value=5.8e-08  Score=100.93  Aligned_cols=161  Identities=11%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      ..+.++...++...+........+.|.+..++ ++...+.+.....+...++.++.++++|| +|||+.+..+.+..++.
T Consensus       230 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        230 QWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVIL  307 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence            34444444444444443333333333343343 34444556666677888888999999999 89999999888766654


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhhhhhHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLFA  174 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~-~~~~r~~~~~~~~~~  174 (478)
                      ........                 ..+.+.+++..++.|++.+...+...++++|..+.++.+ .++..+..++.+...
T Consensus       308 ~~~~~~~~-----------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~  370 (444)
T PRK09669        308 SALIFFIP-----------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA  370 (444)
T ss_pred             HHHHHHhC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence            43333221                 125666777788899999999999999999998754321 222246778888889


Q ss_pred             HHHHHHHHHHHHHhhhccchh
Q 011743          175 TTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      .++|..+|+.++|++.+..||
T Consensus       371 ~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        371 IKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999988665555

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.80  E-value=2.6e-07  Score=93.44  Aligned_cols=148  Identities=6%  Similarity=-0.074  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+..++...+...+.+....+.+.++.+++|+++.+.+.+.....++..++.++.|+++|| +||||.+..+..+..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHH
Confidence            3444445555555566666677778888899999999999999999999999999999999 899999998887655443


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH-
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT-  175 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~-  175 (478)
                      +.+......               ..+.+...++..+.+.+.+...++....+.|..| ++      +++..+...... 
T Consensus       275 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~  332 (377)
T PRK11102        275 IWLVVSALL---------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRF  332 (377)
T ss_pred             HHHHHHHHH---------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHH
Confidence            333222100               1133444444445555555656666666777665 44      677777765433 


Q ss_pred             HHHHHHHHHHHH
Q 011743          176 TLAAMIGVTAIV  187 (478)
Q Consensus       176 ~~g~~~~p~i~~  187 (478)
                      .+|..+++.+++
T Consensus       333 ~~g~~~g~~~~~  344 (377)
T PRK11102        333 GIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHh
Confidence            466666666544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.78  E-value=9.2e-10  Score=116.30  Aligned_cols=191  Identities=13%  Similarity=0.117  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 011743           22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI  101 (478)
Q Consensus        22 ~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~  101 (478)
                      +..++. +..++.......-+++.++++..++|++.+.+-++..+..++..++++| ..|-|.+-+|.++.++|.+++++
T Consensus        10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhc
Confidence            333344 6666677667778899999999999999999999999999999999999 78889999999999999999886


Q ss_pred             HhhcccCCCCC-CC-------C--------------------------CccccchhHHHHHHHHHHHHhccccccccccc
Q 011743          102 QAYSKSLHPPD-CG-------K--------------------------SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPA  147 (478)
Q Consensus       102 ~~~~~~~~~~~-~~-------~--------------------------~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~  147 (478)
                      .++.   .+++ ++       .                          ++..+......++++.++.|+|....++...+
T Consensus        88 Phf~---~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   88 PHFL---SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             cHhh---cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            5432   1111 00       0                          00011113578889999999999999999999


Q ss_pred             cccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc---------------------cc-hhHHHHHHHHHH
Q 011743          148 LGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI---------------------DQ-GWWLGFLISSVA  205 (478)
Q Consensus       148 ~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~---------------------~~-~~~~~f~i~~~~  205 (478)
                      ++=|-.++++      -....++.+.+..+|.++|..+++...+                     .. .||..|++.+..
T Consensus       165 YiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~  238 (539)
T PF03137_consen  165 YIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL  238 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            9999999887      7888999999999999999988875531                     12 399999998888


Q ss_pred             HHHHHHHHHhcCcceeec
Q 011743          206 TLIGLIALAIGKPFYRIQ  223 (478)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~  223 (478)
                      .++..+-+..+.|+.++.
T Consensus       239 ~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  239 LFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHcCCccCCCc
Confidence            777766666655544443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11043 putative transporter; Provisional

Probab=98.76  E-value=5.1e-07  Score=92.33  Aligned_cols=153  Identities=7%  Similarity=-0.086  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 011743           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ  102 (478)
Q Consensus        23 ~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~  102 (478)
                      ...+....++....+.|.|++ +.|++..+.+.......++..++.++++++.|| +|+|+.+....+..+++.+.+...
T Consensus       211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~  288 (401)
T PRK11043        211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLA  288 (401)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555556667777775 579999999998888888889999999999999 899998877766655554433222


Q ss_pred             hhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 011743          103 AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG  182 (478)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  182 (478)
                      ....              ..+....++...+.+++.+...|...+...|..| ++      ++++.++.......++..+
T Consensus       289 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~~~  347 (401)
T PRK11043        289 SLLS--------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCFLA  347 (401)
T ss_pred             HHhc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHHHH
Confidence            1000              1134445556677888888888888887777765 35      7899999988777788888


Q ss_pred             HHHHHhhhccchhHHH
Q 011743          183 VTAIVYVFIDQGWWLG  198 (478)
Q Consensus       183 p~i~~~l~~~~~~~~~  198 (478)
                      +.+.+.+.+.......
T Consensus       348 ~~~~g~l~~~~~~~~~  363 (401)
T PRK11043        348 SLLVSALISTPLLTTG  363 (401)
T ss_pred             HHHHHHccCCChhHHH
Confidence            8888877664444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.75  E-value=3.4e-07  Score=93.57  Aligned_cols=179  Identities=13%  Similarity=0.013  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      ....++..++...+.-....+...|+++.-|.+....+.+.++..++-.+.-.+.+++-.| +|-|+++.++.+..++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            4455566666666666677889999886655888888888888888888888999999999 899999999999988877


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH-H
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA-T  175 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~-~  175 (478)
                      .+.......+              ........++..+.|+..|.+..+...++.+..|++.      |.++.+++... .
T Consensus       288 ~l~a~~~~~~--------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~  347 (400)
T PF03825_consen  288 LLYAYFSDPW--------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSF  347 (400)
T ss_pred             HHHHHhcCCc--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHh
Confidence            7776652100              0011223344567999999999999999999999998      99999998865 4


Q ss_pred             HHHHHHHHHHHHhhhccch------hHHHHHHHHHHHHHHHHHHHhc
Q 011743          176 TLAAMIGVTAIVYVFIDQG------WWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~~~~------~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .+|..+|..++|++.+.+|      |...+.+.+++.++..+++++.
T Consensus       348 Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  348 GLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            6999999999999988765      3345555555555555555444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.73  E-value=1.6e-06  Score=86.48  Aligned_cols=128  Identities=16%  Similarity=0.033  Sum_probs=90.6

Q ss_pred             HHHHHHHcccccCC---ch----hhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHH-HHHHHHHHHHHHHHhhcc
Q 011743           35 GISMVLYFKNEMHF---DI----AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF-GTLEVLSLVMLTIQAYSK  106 (478)
Q Consensus        35 ~~~l~~yl~~~lg~---~~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~-~~~~~i~~~~~~~~~~~~  106 (478)
                      ..++|.|+++..+-   ++    ...+...++..+...+..|+-|-++|. .|+||-.... .++-.+..+.+.....  
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~--  111 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPP--  111 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence            35778888876654   33    344677788888899999999999999 7876655544 4444445555554431  


Q ss_pred             cCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 011743          107 SLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA  185 (478)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i  185 (478)
                                    +..+....+...+..++.........+++.|..++++      .++..+.-+....+|+.+.-+.
T Consensus       112 --------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li~  170 (438)
T COG2270         112 --------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLIF  170 (438)
T ss_pred             --------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHHH
Confidence                          2366677777788889999999999999999999877      5666666666666666554443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.73  E-value=1.1e-06  Score=93.95  Aligned_cols=202  Identities=13%  Similarity=0.141  Sum_probs=156.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      .+...+++....+....+.+++....+-+.+.++++..+.|++.+.+-++..+...+..+.+-| .-|-|.+-+|+++++
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMG  173 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHH
Confidence            3556666666666666666888888888999999999999999999999999999999999999 789999999999999


Q ss_pred             HHHHHHHHHhhc--cc-----------CCC-------------CCC--CCCccc--cc---hhHHHHHHHHHHHHhcccc
Q 011743           94 LSLVMLTIQAYS--KS-----------LHP-------------PDC--GKSSCL--KG---AIAAYFYGSLYLYSLGCGG  140 (478)
Q Consensus        94 i~~~~~~~~~~~--~~-----------~~~-------------~~~--~~~~~~--~~---~~~~~~~~~~~l~gig~g~  140 (478)
                      +|.+++.+.+..  +.           -.+             +.+  .+.++.  +.   .-+..++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            999988765322  00           000             000  000110  01   1345778999999999999


Q ss_pred             ccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc------------------cc-hhHHHHHH
Q 011743          141 NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI------------------DQ-GWWLGFLI  201 (478)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~------------------~~-~~~~~f~i  201 (478)
                      .++...+++=|-..+++      -...+++.+.+..+|+++|..++++..+                  .. .||..|++
T Consensus       254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            99999999999887776      7889999999999999999999987742                  12 39999999


Q ss_pred             HHHHHHHHHHHHHhcCcceee
Q 011743          202 SSVATLIGLIALAIGKPFYRI  222 (478)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~  222 (478)
                      ++.+.++..+.++++.+.+++
T Consensus       328 ~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  328 CGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHHHHHhCcccCcc
Confidence            999988888877777555443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.9e-07  Score=96.87  Aligned_cols=177  Identities=16%  Similarity=0.128  Sum_probs=121.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccch--------hHHH-
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR--------FATC-   85 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--------~~~~-   85 (478)
                      +.+|.+.+..++++.+++.+..++|.|+++.+|++..+.|+..++-.+...+..+++|.++|| +-+        ||.+ 
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFN  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHH
Confidence            568999999999999999999999999999999999999999999999999999999999999 433        1221 


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhh
Q 011743           86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA  165 (478)
Q Consensus        86 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~  165 (478)
                      .++....++..+.+.....   .    +      +......+.++..+.|+..+++.    .-..|..| ++      -+
T Consensus       337 ~i~~~~~ai~l~~l~~~~~---~----~------~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap-q~------a~  392 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVLAFTSD---E----H------RLLAVILLTIAIGLSGFNISGFY----KNHQDIAP-QH------AG  392 (466)
T ss_pred             hHHHHHHHHHHHeeeecCC---C----c------chHHHHHHHHHHHHcccchhhhH----hhhhhccc-hH------HH
Confidence            1122222222222222210   0    0      00122222222233333333322    22223233 33      57


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHHHHHHHHHHHhc
Q 011743          166 SYFNFYLFATTLAAMIGVTAIVYVFID---QGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       166 ~~~~~~~~~~~~g~~~~p~i~~~l~~~---~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ..+++.....++.+.++|.+.+.+.+.   ..|+..|++.+++.+++.+.+.+.
T Consensus       393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            899999999999999999999988742   369999999999988887666554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.69  E-value=3.3e-07  Score=96.10  Aligned_cols=165  Identities=13%  Similarity=0.008  Sum_probs=118.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+.+++..++.....+....+.+.|.+..++ +....+.+.....+...++.++.++++|| +|||+++.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence            556666777777777766666666655554444 56667777777778889999999999999 8999999989887776


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCC-hhhhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND-PKGAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~-~~~~~~r~~~~~~~~~  173 (478)
                      +.+.+......+              ..+.+.+++..++.+++.+...+...++++|..|.++ +.+++..+..++...+
T Consensus       309 ~~~~~~~~~~~~--------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~  374 (473)
T PRK10429        309 SCGVLLLMGLAA--------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM  374 (473)
T ss_pred             HHHHHHHHhccC--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence            665554321000              1245566677778889999999999999999987542 1122224667888888


Q ss_pred             HHHHHHHHHHHHHHhhhccchh
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      ...+|..+++.+.|++.+..||
T Consensus       375 ~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        375 VVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            8899999999999888654444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.69  E-value=7e-07  Score=87.27  Aligned_cols=170  Identities=15%  Similarity=0.071  Sum_probs=134.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      +..|.+.+..=+.++.||.+..|+|.++. +.|+|.+++|+.++..++......+...++++|.-.+|+.......++.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            44677777777889999999999999987 68999999999999999999999999999999856777777777888888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      |.+-+.+..                  .+...+.  .+++|+|.|+.+|....++.+..++.+  +   -++..++.+..
T Consensus       287 G~~G~~~~P------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgmaQg~  341 (395)
T COG2807         287 GLVGLLLAP------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGMAQGV  341 (395)
T ss_pred             HHHHHHHhh------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHHhhhh
Confidence            877666553                  1222222  589999999999999999999877643  1   45677777777


Q ss_pred             HHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHH
Q 011743          175 TTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGL  210 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~-~~~~~f~i~~~~~~~~~  210 (478)
                      ..+=+.+||.+.|++-|.. +|+.++.......++..
T Consensus       342 GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         342 GYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             hHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            7777888999999998765 58887776555544333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.68  E-value=3.3e-07  Score=94.26  Aligned_cols=163  Identities=8%  Similarity=-0.048  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccc-cCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNE-MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      .+..++..++-.....++..+++.|+.+. .+.+...++.....+.....++.+++|+++|| +++||++.++.+..++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence            44445555555556667778899998653 35555666667777788899999999999999 89999998888888877


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .++.....                   +.. ......+.++..+.++|+..+...+..+++.      ......+ .+ .
T Consensus       313 ~ll~~~~~-------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~l-~~-~  364 (410)
T TIGR00885       313 CLGSIFAG-------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAGL-VM-A  364 (410)
T ss_pred             HHHHHHcC-------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHHH-HH-H
Confidence            76666542                   212 2455667888888888999999999998655      2222222 22 2


Q ss_pred             HHHHHHHHHHHHhhhccc------hhHHHHHHHHHHHHH
Q 011743          176 TLAAMIGVTAIVYVFIDQ------GWWLGFLISSVATLI  208 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~~~------~~~~~f~i~~~~~~~  208 (478)
                      .+|+.+.|.+.|++.|..      +.+..|+++.++...
T Consensus       365 ~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       365 IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            399999999999999843      588888887665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.67  E-value=1.4e-07  Score=94.97  Aligned_cols=139  Identities=15%  Similarity=0.063  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+.+.+..++....++.+..+++.|+++.+|+++.+++.+.....+...++.+++|+++|| +|||+.+..+......+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHH
Confidence            4555555566666677788899999999999999999999999999999999999999999 899998888877766666


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccch-hHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGA-IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .++.....                .. +....++...+.+++.|...+...+++++.+| ++      +++.+++.....
T Consensus       306 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~  362 (366)
T TIGR00886       306 FLVVLGLV----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLVGAIG  362 (366)
T ss_pred             HHHHhcCC----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHHHHhc
Confidence            55544321                00 34444455556666667767777788888876 34      789999888777


Q ss_pred             HHHH
Q 011743          176 TLAA  179 (478)
Q Consensus       176 ~~g~  179 (478)
                      ++|+
T Consensus       363 ~~g~  366 (366)
T TIGR00886       363 NLGG  366 (366)
T ss_pred             cCCC
Confidence            7653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.66  E-value=9.3e-07  Score=91.53  Aligned_cols=162  Identities=17%  Similarity=0.110  Sum_probs=117.7

Q ss_pred             HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc--c--chhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011743           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY--L--SRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD  112 (478)
Q Consensus        37 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~--Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  112 (478)
                      -...|+++++|+++.+.....+...+. ...-|+.|.++|-+  +  .||.-++++.++.+++...+......       
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-------   82 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-------   82 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence            344578899999999988766655543 34557889999996  2  35556666776665555555443210       


Q ss_pred             CCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011743          113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID  192 (478)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  192 (478)
                              ..+.....+..++..+|........-+.+.|....+..+    |+...++.+....+|..++..+.|.+.+.
T Consensus        83 --------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~  150 (433)
T PF03092_consen   83 --------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDS  150 (433)
T ss_pred             --------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence                    124455566778888999999999999999988655422    68889999999999999999999999998


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          193 QGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       193 ~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      .+++..|.+.+.+..+..+..++..+
T Consensus       151 ~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  151 FGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             CCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            89999998887776666555544444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.60  E-value=2.2e-06  Score=88.62  Aligned_cols=187  Identities=17%  Similarity=0.082  Sum_probs=125.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      ..+..+..+...+..+++......+-...+-++-|++..++.+++....+...+..+++.++.|| .|||++++.+..++
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~  345 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLM  345 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            44556666666666666655555555566667889999999999999999999999999999999 89999999999998


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHH-HHHHHHHHHHhccccc-cccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAA-YFYGSLYLYSLGCGGN-RGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~gig~g~~-~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      .+..+++..........           ..... ..+++.++..+..+.- .|...-+.+|++|++.      |..++++
T Consensus       346 ~~~~~~~~~~~~l~~~~-----------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~  408 (485)
T KOG0569|consen  346 AVALLLMSIALFLSNSF-----------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSV  408 (485)
T ss_pred             HHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHH
Confidence            88887776553210000           00111 2234444544444443 4666788899999988      8899988


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ......+...+-...-..+.+..|- ..|++..+..++..+..+...|
T Consensus       409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lP  455 (485)
T KOG0569|consen  409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLP  455 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCc
Confidence            8777666665544444455555553 4444444444445555444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.58  E-value=2.4e-06  Score=87.21  Aligned_cols=140  Identities=9%  Similarity=-0.065  Sum_probs=99.2

Q ss_pred             HHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011743           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (478)
Q Consensus        35 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  114 (478)
                      ....+.|+++.+|+++.+.+.......++..++.++.+++.|| .|++..  .+.....++.+.........        
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~--------  295 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMW--QSVICCLLAGLLMWIPGWFG--------  295 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHhc--------
Confidence            3455667888899999999999888888888888999999999 674332  23333333322222111000        


Q ss_pred             CCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 011743          115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG  194 (478)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  194 (478)
                            ..+.+.++.+..+.++|.+...|...+...|.+|+ +      +++..++.....++|..+++.+++.+.+...
T Consensus       296 ------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~  362 (394)
T PRK11652        296 ------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQ  362 (394)
T ss_pred             ------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence                  11445567778889999999999999988888873 4      6888888888889999999999998876544


Q ss_pred             hHHH
Q 011743          195 WWLG  198 (478)
Q Consensus       195 ~~~~  198 (478)
                      +...
T Consensus       363 ~~~~  366 (394)
T PRK11652        363 FSLG  366 (394)
T ss_pred             HHHH
Confidence            4443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.56  E-value=1.7e-05  Score=80.02  Aligned_cols=156  Identities=10%  Similarity=0.045  Sum_probs=112.7

Q ss_pred             HHHHHHcccc-cCCchhhH-hHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 011743           36 ISMVLYFKNE-MHFDIAGA-SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (478)
Q Consensus        36 ~~l~~yl~~~-lg~~~~~~-~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  113 (478)
                      |++..|+.+. .|++..|. .-+.-+.+-......++...++|. +|.|.+++++.+...+...++....          
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~----------   92 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT----------   92 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence            6888999987 99999986 466777777788888999999999 8999999888887777766665543          


Q ss_pred             CCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 011743          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI--  191 (478)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~--  191 (478)
                               +...+-+.-+..|++.+. ..+..+++=...|+++      -.++.+..+.+.-+|-.++..++=.+..  
T Consensus        93 ---------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~~  156 (412)
T PF01770_consen   93 ---------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSFG  156 (412)
T ss_pred             ---------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     666677777777776555 3445555555555544      4566777777777777777766654443  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          192 DQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       192 ~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ..++...+++......+++++.++..+
T Consensus       157 ~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  157 GVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            356888888888777777776665543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.50  E-value=2.6e-06  Score=87.26  Aligned_cols=159  Identities=14%  Similarity=0.063  Sum_probs=125.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |....+++..++...++......+..|.+..+|-+.......+.....+..++.++...+++| +|+||++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHH
Confidence            445555667777777777667777888888899899999889998888888889999999999 9999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChh-hhhhhhhHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF  173 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~-~~~~r~~~~~~~~~  173 (478)
                      +...+.+..                 ..+..+.++..++.++|.+...+...++++|..+-++-+ .+++-|..++.+..
T Consensus       315 ~~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF  377 (467)
T COG2211         315 GYLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTF  377 (467)
T ss_pred             HHHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHH
Confidence            998888765                 237888889999999999999999999999998754322 11113556666666


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 011743          174 ATTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~  191 (478)
                      ..=+|.+++..+.|++..
T Consensus       378 ~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         378 FRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666777777766666543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.48  E-value=1.1e-05  Score=76.68  Aligned_cols=160  Identities=11%  Similarity=0.039  Sum_probs=110.3

Q ss_pred             HHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011743           35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG  114 (478)
Q Consensus        35 ~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  114 (478)
                      +......+++.+|+|+.|.+.+...-.++..+ .++.|.+.|+ +|.+.++.+|.+...+|..++..+-. ....     
T Consensus        21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~-~~i~-----   92 (250)
T PF06813_consen   21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS-GRIP-----   92 (250)
T ss_pred             hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh-CccC-----
Confidence            44555678899999999999999999999886 4889999999 89999999999999999988876542 0000     


Q ss_pred             CCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 011743          115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG  194 (478)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  194 (478)
                            ..+.+.+.+..++.+.+.+.+..+......+-||+ +      ||++.++.-....+++.+-..+...+.+.-.
T Consensus        93 ------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~  159 (250)
T PF06813_consen   93 ------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDP  159 (250)
T ss_pred             ------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCCh
Confidence                  12556667777777777666655555555577874 5      8999998877777766655555544443322


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh
Q 011743          195 WWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       195 ~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      -...++++....+++++...+
T Consensus       160 ~~fll~la~~~~~v~l~~~~~  180 (250)
T PF06813_consen  160 SSFLLFLAVLPAVVCLVAMFF  180 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            333444444444444444333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.47  E-value=1.4e-06  Score=91.33  Aligned_cols=184  Identities=10%  Similarity=-0.017  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhh----HhHHHHHHHHHHHHHhhHHHH----HhhhccchhHH--HH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAG----ASNTLTNFFGSTFLLCLVGGF----ISDTYLSRFAT--CL   86 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~----~~~~~~~~~~~~~~~~~~~G~----laDr~~Gr~~~--~~   86 (478)
                      ...+++...+-...|.-..+.++.|..++.+.+...    .+++.+...+...+..|+..+    +.||..+.+..  +.
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            333444445555666556666777777665544322    567777777777777776554    44431222333  36


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhh
Q 011743           87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS  166 (478)
Q Consensus        87 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~  166 (478)
                      +|+++.+++...+.+.....  .+        ....+.+++++..++.++|.....|...+++.+..|++.      |++
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~--~~--------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~  417 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFA--DA--------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQ  417 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhc--CC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence            78888888877766532100  00        002378889999999999999999999999999999888      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       167 ~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .++++.....+|..+++.+.....+..+|...|...++..++..++.++.
T Consensus       418 ~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       418 MLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888877666678777777776665555555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.47  E-value=2.2e-06  Score=89.54  Aligned_cols=161  Identities=11%  Similarity=0.047  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      ..+.++...++...+..........|.+..+|. ....+.++..+.+...++.+++++++|| +|+|+++..+..+.++.
T Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~  306 (460)
T PRK11462        229 QWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVI  306 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence            344444444444444333333333333333443 3345667788888899999999999999 89999887665544443


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhh-hhhhhhHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKG-AKALASYFNFYLFA  174 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~-~~~r~~~~~~~~~~  174 (478)
                      .++..+..                 ..+...+++..++.|++.+...+...++++|..+.++-+- +++-+..++.....
T Consensus       307 ~~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~  369 (460)
T PRK11462        307 SLAMFFVP-----------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFV  369 (460)
T ss_pred             HHHHHHhc-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHH
Confidence            33332221                 1123334445566777777777777788888877432111 11124445666677


Q ss_pred             HHHHHHHHHHHHHhhhccchh
Q 011743          175 TTLAAMIGVTAIVYVFIDQGW  195 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~  195 (478)
                      ..+|..+++.++|++.+..||
T Consensus       370 ~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        370 LKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC
Confidence            889999998888876543333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.46  E-value=2.4e-06  Score=86.56  Aligned_cols=176  Identities=12%  Similarity=0.036  Sum_probs=137.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccC---CchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMH---FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg---~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      |..|.+.+........|+..-.-.+.|....++   .++...|.+.+...+.-.+.-.+..++.+| +|.|+.++++.++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence            557766666555555555544456777765443   455667888888888999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .++=...++++.                   +++.+.+...+.++-.+..-.+..-++++.+|++-      ..+.+.+.
T Consensus       299 ~~iRi~~~~~~~-------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~  353 (412)
T PF01306_consen  299 MAIRIIGSGFAT-------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVG  353 (412)
T ss_dssp             HHHHHHHHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHH
T ss_pred             HHHHHHHHhhhc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence            888877777765                   78889999999999999999999999999999765      66777775


Q ss_pred             H-HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          172 L-FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       172 ~-~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      . .+..+|..+.+.++|.+-++.|++..|++.+.+.+...++..+.
T Consensus       354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence            4 67789999999999999999999999988777665555554444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.41  E-value=1.9e-06  Score=80.63  Aligned_cols=93  Identities=15%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             HHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 011743           40 LYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL  119 (478)
Q Consensus        40 ~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  119 (478)
                      .|+.++.|+...++|.+..+.....+++..+.|.++|| .|||+..+.-++.+.    +..+.-+               
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYi----LsCiTKh---------------  120 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYI----LSCITKH---------------  120 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHH----HHHHhhc---------------
Confidence            46777899999999999988889999999999999999 899997665554444    4444432               


Q ss_pred             cchhHHHHHHHHHHHHhccccccccccc-cccCCC
Q 011743          120 KGAIAAYFYGSLYLYSLGCGGNRGTLPA-LGAGQF  153 (478)
Q Consensus       120 ~~~~~~~~~~~~~l~gig~g~~~~~~~~-~i~~~~  153 (478)
                       +...-.++++|.+.|+..+...++.-+ +++|.-
T Consensus       121 -SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  121 -SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             -CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence             125566889999999999988777654 345544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.34  E-value=1.2e-05  Score=77.13  Aligned_cols=146  Identities=19%  Similarity=0.197  Sum_probs=108.9

Q ss_pred             HHHHHHcccccCCch--hhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 011743           36 ISMVLYFKNEMHFDI--AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC  113 (478)
Q Consensus        36 ~~l~~yl~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  113 (478)
                      ...+.+.. +.+.+.  ...++....+.+...++.++.|.++|| +|||+.+..+.....++.++......         
T Consensus        23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            34444433 444444  578999999999999999999999999 79998888888765555444444420         


Q ss_pred             CCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCC-CChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHhhhc
Q 011743          114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE-NDPKGAKALASYFNFYLF-ATTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~-~~~~~~~~r~~~~~~~~~-~~~~g~~~~p~i~~~l~~  191 (478)
                              .....+++.|...|++.+...+...+++.|.+|+ ++      |+...+.... ...+|..++|.+++.+..
T Consensus        92 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          92 --------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             --------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    1477888899999999999999999999999987 33      7788888777 577888888877776654


Q ss_pred             c--chhHHHHHHHHHHH
Q 011743          192 D--QGWWLGFLISSVAT  206 (478)
Q Consensus       192 ~--~~~~~~f~i~~~~~  206 (478)
                      .  .+|+..|.+.....
T Consensus       158 ~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         158 ALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHhcchHHHHHHHHHHH
Confidence            3  47888666554443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.29  E-value=2.2e-05  Score=80.92  Aligned_cols=170  Identities=12%  Similarity=0.062  Sum_probs=110.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |.++..++...+....++....+.|.|+++.+|++..+.++.......+..++..+.+.+.++ .+++|.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHH
Confidence            446656666666777777777788999999999999999999887888888877777776655 3444554444444444


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +..++......   .           ..+....+++.++.++|.+...|+..+..-  .+.+++     ++++.+.....
T Consensus       297 g~~l~~~~~~~---~-----------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a~~~~~  355 (413)
T PRK15403        297 GLALLIVGNLL---W-----------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSASLNMV  355 (413)
T ss_pred             HHHHHHHHHHH---c-----------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHHHHHHH
Confidence            44444332100   0           113334567888889999998888875332  222222     56777777777


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATL  207 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~  207 (478)
                      ...+...++.+.+++.+. +-.++|....++..
T Consensus       356 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        356 ILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            777777788888887554 55666665544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.27  E-value=3.9e-05  Score=76.79  Aligned_cols=173  Identities=17%  Similarity=0.171  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~   99 (478)
                      .+...++..+++++==..+=+|--+.+|++..+.+.++.....+..++-.+.|++..|..+++++-.+++...++++.+.
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li  292 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI  292 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence            44444555555554445666788888999999999999999999999999999998865899999999999999998887


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA  179 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  179 (478)
                      ..+..                ..+.+.+..+.+++|+|.|.+.....+.+.|+.++++      .+..++.+..+..++.
T Consensus       293 i~a~~----------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~  350 (403)
T PF03209_consen  293 ILAGP----------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIAR  350 (403)
T ss_pred             HHHHh----------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHH
Confidence            77753                2367889999999999999999999999999998887      7899999988888888


Q ss_pred             HHHHHHHHhhhc----------cchhHHHHHHHHHHHHHHHHHHH
Q 011743          180 MIGVTAIVYVFI----------DQGWWLGFLISSVATLIGLIALA  214 (478)
Q Consensus       180 ~~~p~i~~~l~~----------~~~~~~~f~i~~~~~~~~~~~~~  214 (478)
                      .++-.++|.+.|          ..+|...|.+-++.+++++.+..
T Consensus       351 Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  351 GLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            888888876643          23577777777776666655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=0.00035  Score=71.82  Aligned_cols=103  Identities=12%  Similarity=0.046  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHh
Q 011743           57 LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL  136 (478)
Q Consensus        57 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi  136 (478)
                      +.+-.....+..++++.+.|+ +|.|..+.++...++.-..-+...                    |...++.+-.+.|+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~--------------------N~y~~yfssallG~  114 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP--------------------NSYYLYFSSALLGF  114 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc--------------------chHHHHHHHHHhhh
Confidence            555556677788899999999 999999999988776643333221                    66778899999999


Q ss_pred             ccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 011743          137 GCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI  186 (478)
Q Consensus       137 g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  186 (478)
                      |.+..+.....++++..++++      +++..++.-...+.+..+|..+.
T Consensus       115 Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  115 GAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             hHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            999999999999999988777      77777776666666666654433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=1.3e-06  Score=86.29  Aligned_cols=180  Identities=15%  Similarity=-0.005  Sum_probs=133.4

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccc--hhHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS--RFATCLVFGTLEVL   94 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~~i   94 (478)
                      ++...+.--..+.+.-..=+.+++++.+++..+..+.|....-..+...++..+.|.++|| ++  |-..-..++++...
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~~~G~  350 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLATVGV  350 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHHHHHH
Confidence            3334444444444444466888899999999677799999888999999999999999999 79  54444445555554


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      .+...++++                   +...+++-+...+++.+...++..+......+.++.++-.--+..+++...+
T Consensus       351 ~~~~iP~~~-------------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a  411 (464)
T KOG3764|consen  351 SSGPIPFAT-------------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAA  411 (464)
T ss_pred             HhchhHhhh-------------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHH
Confidence            444444443                   6777888888899999998888888888888876533222246778888888


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ..+|..+||.++|.+.+..|++|.-.+.+...++-..++.+.
T Consensus       412 ~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  412 FSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999998777777766555444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.24  E-value=8.5e-06  Score=62.61  Aligned_cols=68  Identities=13%  Similarity=0.017  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHH
Q 011743           23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE   92 (478)
Q Consensus        23 ~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~   92 (478)
                      ..++...+.-.+.++++.|++ +.|+|+.++|.+.++..+...+++|+.|+++|| +||+|.++....++
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence            344445555567899999998 599999999999999999999999999999999 89988887766543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.21  E-value=1.8e-05  Score=83.71  Aligned_cols=175  Identities=15%  Similarity=-0.006  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhHHHHHHHccc--ccCCch------hhHhHHHHHHHHHHHHHhhHH----HHHhhhccchhHHHHHHHHH
Q 011743           24 SALENMGFIANGISMVLYFKN--EMHFDI------AGASNTLTNFFGSTFLLCLVG----GFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        24 ~~~~~~~~~~v~~~l~~yl~~--~lg~~~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Gr~~~~~~~~~~   91 (478)
                      .++....+|.+..-++.++..  ..+.+.      ...+++.++..+...++.++.    +++.|| .+..+.+.+|+++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHH
Confidence            445566677777666666442  111111      124555566666666666666    555666 5667889999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+++...+......    .++.|      ..+.+++.+..+++++|.....|...+++.+..|++.      |++.++.+
T Consensus       360 ~~l~f~~l~~~~~~----~~~~~------~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~  423 (500)
T PRK09584        360 CSGAFLVLPLGAKF----ANDAG------IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSW  423 (500)
T ss_pred             HHHHHHHHHHHHHh----cCCCC------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHH
Confidence            99999887766421    01111      1245678899999999999999999999999999888      99999988


Q ss_pred             HHHHHHHHHHHHHHHHhhh----------ccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          172 LFATTLAAMIGVTAIVYVF----------IDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~----------~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      +....+|..++..+.+...          ...+++..|...++..++..++++.
T Consensus       424 ~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        424 FLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777777666554221          0123677777766665544444443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.21  E-value=2.3e-05  Score=77.95  Aligned_cols=166  Identities=15%  Similarity=0.081  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+.-.+..++=-..--.+..+++.|+.+..|++..++...++.+..+.+++..++-++-.| +-..|.+.+..+...+-.
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHH
Confidence            3333444444434444566899999999999999999999999999999999999999889 899998887776655554


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      +...+.+                   +.. -+.+.++.|+..+.++|++.+...+..|+++        +.-+..-.+..
T Consensus       317 ~~~~l~~-------------------g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~l~mai  368 (422)
T COG0738         317 LAVALIG-------------------GVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGLLVMAI  368 (422)
T ss_pred             HHHHHhc-------------------ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccceeeeehe
Confidence            4444443                   322 3345678899999999999999999999544        22233333456


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~  211 (478)
                      +|+++-|.+.|++.|..+-...+.+....+.+.++
T Consensus       369 vGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~  403 (422)
T COG0738         369 VGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVL  403 (422)
T ss_pred             ecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            89999999999999999988887744444444443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.19  E-value=5.9e-06  Score=86.55  Aligned_cols=137  Identities=12%  Similarity=-0.136  Sum_probs=109.3

Q ss_pred             cccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccc
Q 011743           42 FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG  121 (478)
Q Consensus        42 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (478)
                      ..+.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++.+++.........-..   -..|.+     
T Consensus       279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~---~~~gi~-----  349 (468)
T TIGR00788       279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWN---LAFGIS-----  349 (468)
T ss_pred             EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccc---cccCCC-----
Confidence            346799999999999999999999999999999999 89999999999998887755432110000   001111     


Q ss_pred             hhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 011743          122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG  194 (478)
Q Consensus       122 ~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  194 (478)
                       +...+....++.+++.+........++.+..|++.      +++.++++....++|..+++.+++.+.+..|
T Consensus       350 -~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       350 -DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             -CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             23344555677888888888888999999999988      8999999999999999999999999987766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.19  E-value=3.1e-05  Score=80.66  Aligned_cols=204  Identities=10%  Similarity=-0.065  Sum_probs=141.2

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHccc-ccCCchh------h----HhHHHHHHHHHHHHHhhHHHHHhhhc
Q 011743           10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIA------G----ASNTLTNFFGSTFLLCLVGGFISDTY   78 (478)
Q Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~-~lg~~~~------~----~~~~~~~~~~~~~~~~~~~G~laDr~   78 (478)
                      .|+.||.++.+++++++.-++++....+.+.|+.+ .+|-++.      +    ..+....+.+.+.+..++--++.+| 
T Consensus       253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-  331 (477)
T TIGR01301       253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-  331 (477)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            35689999999999999999999999999998875 3443221      1    2345556666666777788889999 


Q ss_pred             cch-hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC-cc-ccchhHHHHHHHHHHHHhccccccccccccccCCCCC
Q 011743           79 LSR-FATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS-SC-LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE  155 (478)
Q Consensus        79 ~Gr-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~  155 (478)
                      +|+ |++..++.++.+++.....+....+.-....-|+. .. +.....+..++...+.|+..+.....-.+++++..++
T Consensus       332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence            885 67768888888888777664431100000000000 00 0011246666777889999999999999999999985


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccch--hHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          156 NDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG--WWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       156 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~--~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ++.+    .|..+|+.+.++.+...+.....|.+.+..|  -.+.+.+.++.++++.+..++..|
T Consensus       412 ~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~  472 (477)
T TIGR01301       412 LGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP  472 (477)
T ss_pred             cCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence            4411    6899999999999888888877777554433  566888888888888777666544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.13  E-value=1.9e-05  Score=83.13  Aligned_cols=176  Identities=11%  Similarity=-0.009  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhHHHHHHHcccccCCchh----hHhHHHHHHHHHHHHHhhHHHHHhhhccchhH-------HHHHHHHHH
Q 011743           24 SALENMGFIANGISMVLYFKNEMHFDIA----GASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-------TCLVFGTLE   92 (478)
Q Consensus        24 ~~~~~~~~~~v~~~l~~yl~~~lg~~~~----~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-------~~~~~~~~~   92 (478)
                      ..+....+......++.|.++..+.+..    ...++.+...+...+..|+.|++.|| +|+|+       -+.+|+++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHH
Confidence            3334444454546666776643322111    12344445556677788889999999 89987       377788887


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH
Q 011743           93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL  172 (478)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~  172 (478)
                      +++.+.+.....  ...+ ..+      ..+.++++...++.|+|.+...|...+++.+..|++.      ++.+++.+.
T Consensus       357 ~~~~~~~~~~~~--~~~~-~~~------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~~  421 (489)
T PRK10207        357 SLGFLTAAAAGM--WFAD-AQG------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMWF  421 (489)
T ss_pred             HHHHHHHHHHHH--hhcC-CCC------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHHH
Confidence            777655432210  0000 001      1256777788999999999999999999999999887      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc---------cc-hhHHHHHHHHHHHHHHHHHHHh
Q 011743          173 FATTLAAMIGVTAIVYVFI---------DQ-GWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~---------~~-~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ...++|..+|..++.....         .. .+.+.|...++..++..++++.
T Consensus       422 l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        422 LTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988877765521         01 2455565555555444444444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.06  E-value=0.0092  Score=61.38  Aligned_cols=192  Identities=11%  Similarity=-0.079  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~   96 (478)
                      .+.+...-++.+.+.=+--.-.+.|+.+-+.=+..-.+..-.+-.+...++.+..|...|| .-|.|++..+.+..-++.
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHH
Confidence            3444444444333333222333444443332233344455555667788888999999999 799999998887755544


Q ss_pred             HHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHH
Q 011743           97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~  176 (478)
                      .+....-..-...+.....+   +......+.+...+..+..=.......+.=-||...=..+++..+.+..+..+=.=-
T Consensus        83 ~~s~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL  159 (432)
T PF06963_consen   83 AASCALFLLLLSYPSSSSQS---SWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDL  159 (432)
T ss_pred             HHHHHHHHHHHhCCcccccc---chHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHH
Confidence            33322110000000000000   001112222222222222111222223333444332111111124444444444445


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743          177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA  212 (478)
Q Consensus       177 ~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~  212 (478)
                      +--.++|.+.|.+.+..+......+.++..++...+
T Consensus       160 ~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  160 FCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            677889999999988788888777777776666654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.05  E-value=1.4e-05  Score=81.93  Aligned_cols=172  Identities=9%  Similarity=-0.066  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~   99 (478)
                      +++...+..++.--++.++--+++ +++-.+..-|.....-..+-.++.++.+++-.| +|+-+++..+++.+++=++..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHH
Confidence            344444555555555566655554 556566666666666667777888899999999 899999999999999887777


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH-HHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA-TTLA  178 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g  178 (478)
                      ....                   |+|+.+..-+++|+..+.++.++.+++++..|++.      |.++.++.... -.+|
T Consensus       454 S~L~-------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG  508 (618)
T KOG3762|consen  454 SYLQ-------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLG  508 (618)
T ss_pred             HHhc-------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccC
Confidence            7665                   78888899999999999999999999999999988      88898887754 4689


Q ss_pred             HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       179 ~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      -.+|.+++|.+.+.+|=+..|.+.++.+++.++.+....+
T Consensus       509 ~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  509 KGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             cchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999899999988888777766655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.96  E-value=0.00022  Score=75.76  Aligned_cols=150  Identities=13%  Similarity=0.018  Sum_probs=108.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchh---hHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHH-HHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA---GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-VFG   89 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~   89 (478)
                      +|.....++..++..+.||++..+.|......++-++.   +.++....+.++..++.++.|++..+ ++|-|-.+ ++.
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~li~~~  387 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQLIFGS  387 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHHHHHH
Confidence            57788788888999999999888888877776766553   56788888888888999999999988 78877664 566


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        90 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ++++++..++....                 .++....+...++.|+|.|...........-..|+++      .+.+.+
T Consensus       388 ~~~ta~~Gama~~~-----------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~a~g  444 (599)
T PF06609_consen  388 VLMTAFCGAMAAVR-----------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGTATG  444 (599)
T ss_pred             HHHHHHHHHHHHcc-----------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHHHHH
Confidence            66666555555432                 1233334556678888888877666665555666555      888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011743          170 FYLFATTLAAMIGVTAIV  187 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~  187 (478)
                      +......+|+.+|..+-.
T Consensus       445 L~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  445 LTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHhhHHHHHHHH
Confidence            888778888877776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.0001  Score=77.04  Aligned_cols=167  Identities=15%  Similarity=0.092  Sum_probs=105.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc---cchhHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATCLVFGTL   91 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~~~~   91 (478)
                      ..+|...+..++.....|+...++|.|+++..|++..+++.+...+.++..++.+++|+++||.   ..+|......+.+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3488889999999999999999999999997789999999999999999999999999999992   2444444444444


Q ss_pred             HH-HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           92 EV-LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        92 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      .. +|.+.+....                   .......+.+....+.+...++......+-..++..     +-+..+.
T Consensus       353 ~~~~g~~~l~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~~~~~~  408 (495)
T KOG2533|consen  353 YAIIGAISLLAAA-------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----ALTTVSA  408 (495)
T ss_pred             HHHHHHHHHHhhc-------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hHHHHhh
Confidence            33 3333333222                   122222222233333333444445555555544431     4445555


Q ss_pred             HHHHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHH
Q 011743          171 YLFATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVA  205 (478)
Q Consensus       171 ~~~~~~~-g~~~~p~i~~~l~~~~~~~~~f~i~~~~  205 (478)
                      +..+.+. |.+.+++..+.....+.|...|......
T Consensus       409 ~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~  444 (495)
T KOG2533|consen  409 IIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAA  444 (495)
T ss_pred             hhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHH
Confidence            4444444 4444444445555556788888554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.81  E-value=0.0012  Score=68.14  Aligned_cols=70  Identities=14%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHH
Q 011743          388 TQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLH  467 (478)
Q Consensus       388 ~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g  467 (478)
                      +..+.+.+|+.+..+=++....+               .+.|.+.+.-+++|+...++..+.-+++...+|+++|.++++
T Consensus       434 GHv~v~~lgLa~~~~Rf~~~S~L---------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~  498 (618)
T KOG3762|consen  434 GHVNVMYLGLACNVGRFLYYSYL---------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQG  498 (618)
T ss_pred             cccceeeehhhHHHHHHHHHHHh---------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence            55566788888877777777777               477888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 011743          468 LHFCH  472 (478)
Q Consensus       468 ~~~~~  472 (478)
                      +....
T Consensus       499 l~~g~  503 (618)
T KOG3762|consen  499 LLQGI  503 (618)
T ss_pred             HHHHH
Confidence            87643

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.79  E-value=1.7e-07  Score=97.35  Aligned_cols=181  Identities=16%  Similarity=0.018  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      .....+....+..+..+....+...++.+..+.+..  -.......+...++.+++.++.|| +|||++++.+..+.++.
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-ccccccccccccccccc
Confidence            344444444455444443444444555666777776  233334446666777888899999 89999999999888877


Q ss_pred             HHHHH-HHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccc-cccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           96 LVMLT-IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCG-GNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g-~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      .+.+. ....  .       .++ ++..+.. .++...+...+.+ +..+....+.+|.+|.+.      |.++.++.+.
T Consensus       330 ~~~~~~~~~~--~-------~~~-~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~  392 (451)
T PF00083_consen  330 SLILGIIFFL--G-------VSS-SSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYA  392 (451)
T ss_pred             cccccccccc--c-------ccc-ccccccc-cceeeeeccccccccccccccccccccccccc------cccccccccc
Confidence            76664 1110  0       000 0000111 1222222222223 345666688899999998      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ...+++.++|.+...+.+..+-...|.+.++++++..+..++.
T Consensus       393 ~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~  435 (451)
T PF00083_consen  393 VGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFF  435 (451)
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHhheeEE
Confidence            9999999888888777766553455555555555555544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.71  E-value=0.00077  Score=71.52  Aligned_cols=152  Identities=13%  Similarity=-0.052  Sum_probs=86.8

Q ss_pred             CcchhHHHHHHHHHHHH-HHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           13 GFRACTFVFVLSALENM-GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~-~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      .+|.....+....+.++ ++..+..+.+..+ +..|.+... .....+..+...++..++.++.|| +|||+.++.+.+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHH
Confidence            44444444444444444 4444445555554 445555433 555566667777788888999999 8999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      +.++.++++...........      ..+......+....+.......+..|....+.+|.+|.+-      |+++.++.
T Consensus       369 m~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~~  436 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYPN------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASLA  436 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCC------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHHH
Confidence            99999888765421110000      0000111222222222222223334555567899999877      77777776


Q ss_pred             HHHHHHHH
Q 011743          172 LFATTLAA  179 (478)
Q Consensus       172 ~~~~~~g~  179 (478)
                      .....+..
T Consensus       437 ~~~n~~~~  444 (513)
T KOG0254|consen  437 VAVNWLWN  444 (513)
T ss_pred             HHHHHHHH
Confidence            55544333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.69  E-value=0.024  Score=57.50  Aligned_cols=51  Identities=16%  Similarity=0.090  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhcc
Q 011743          426 ISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLA  476 (478)
Q Consensus       426 ~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg  476 (478)
                      .+.|.+....+..|+-.+.........+.+..|+++|-..||......++|
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~G  383 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLG  383 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHH
Confidence            467777778888899999999999999999999999999999999888776

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.00022  Score=72.15  Aligned_cols=136  Identities=10%  Similarity=0.182  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhH
Q 011743          312 MMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQ  391 (478)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~  391 (478)
                      ...+++...+-++=...+...+.....+.+.+    ....+.++..-.+...+..|+.+++-+    |.       ++..
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~----~s~~Gll~~vf~v~~~i~sPl~gyLad----ry-------NR~~   99 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNIS----DSELGLLQTVFIVVFMIASPLFGYLAD----RY-------NRKR   99 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCC----chhccchhHHHHHHHHHHHHHHHHHHh----hc-------Ccce
Confidence            34455555555555555555544433333333    334567777777888899999998543    42       6667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011743          392 RVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFC  471 (478)
Q Consensus       392 ~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~  471 (478)
                      .+.+|..+-.++.+..++.+               .+|.+.+.-.+.|+||....|...+++++..|.+.|+++++++++
T Consensus       100 v~~vG~~iW~~Av~~~~fs~---------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~  164 (493)
T KOG1330|consen  100 VIAVGIFIWTLAVFASGFSN---------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF  164 (493)
T ss_pred             EEeeHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence            78999999888888888873               468888899999999999999999999999999999999999999


Q ss_pred             HhhccC
Q 011743          472 HCHLAT  477 (478)
Q Consensus       472 ~~~lg~  477 (478)
                      ...+|.
T Consensus       165 ~ipvGs  170 (493)
T KOG1330|consen  165 AIPVGS  170 (493)
T ss_pred             hccccc
Confidence            988875

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.61  E-value=0.046  Score=56.95  Aligned_cols=161  Identities=12%  Similarity=0.035  Sum_probs=95.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCc-----hhhHhHHHHHHHHHHHHH-hhHHHHHhhhccchhHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFD-----IAGASNTLTNFFGSTFLL-CLVGGFISDTYLSRFATCLVF   88 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Gr~~~~~~~   88 (478)
                      |.+..+.+..++-.+.|+.+.     -+++.+.++     .+...++-....+...+. .++-+++++| ++|+|.+.+.
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~   80 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTV   80 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHH
Confidence            345556666667767766443     246666663     345566666555555555 7889999999 8999999887


Q ss_pred             HHHHHHHHHHHHHHh--hcccCCCCCCCC--C-cccc----------chhHHHHHHHHHHHHhccccccc-cccccccCC
Q 011743           89 GTLEVLSLVMLTIQA--YSKSLHPPDCGK--S-SCLK----------GAIAAYFYGSLYLYSLGCGGNRG-TLPALGAGQ  152 (478)
Q Consensus        89 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~--~-~~~~----------~~~~~~~~~~~~l~gig~g~~~~-~~~~~i~~~  152 (478)
                      ...+..-..+++..-  ..+.++|..+-.  - ..+-          .+....+++..-+.+   ....+ ...++..|.
T Consensus        81 ~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~---~~vvS~lFW~fandi  157 (472)
T TIGR00769        81 ISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG---SVVLSLLFWGFANQI  157 (472)
T ss_pred             HHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence            776666555554331  112222211100  0 0000          001112222222221   12222 456788899


Q ss_pred             CCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011743          153 FDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (478)
Q Consensus       153 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  190 (478)
                      ++.++      -.|.+++...+.|+|..+++.+..++.
T Consensus       158 ~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       158 TTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98776      678999999999999999999888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.55  E-value=0.0012  Score=71.94  Aligned_cols=170  Identities=15%  Similarity=0.121  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHH-HHHHHhhHHHHHhhhccc--hhHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLS--RFATCLVFGTLE   92 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~   92 (478)
                      ..+...+..++....++++..++|.|+++++|+++.+++.+.+...+ +..++.+++|+++|| ++  .|+++.+++++.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHHHH
Confidence            46667788888999999999999999999999999999999988776 568899999999999 77  567888888777


Q ss_pred             HHHHHHHHHHh-----h-------------------c----------ccCCCCCCCCC----------c-----------
Q 011743           93 VLSLVMLTIQA-----Y-------------------S----------KSLHPPDCGKS----------S-----------  117 (478)
Q Consensus        93 ~i~~~~~~~~~-----~-------------------~----------~~~~~~~~~~~----------~-----------  117 (478)
                      .++.++....-     +                   .          +....|=||.+          +           
T Consensus       410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~  489 (633)
T TIGR00805       410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM  489 (633)
T ss_pred             HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence            77654422100     0                   0          00000101110          0           


Q ss_pred             --------------------c-ccchh-HHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743          118 --------------------C-LKGAI-AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus       118 --------------------~-~~~~~-~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                                          | ++..+ +..+++..++..+..+.........+-+.+|+++      |.-+.|+.....
T Consensus       490 ~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~~  563 (633)
T TIGR00805       490 VYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLCM  563 (633)
T ss_pred             eecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHHH
Confidence                                1 12222 3445555555556556656666677889999998      899999998776


Q ss_pred             H-HHHHHHHHHHHhhhcc
Q 011743          176 T-LAAMIGVTAIVYVFID  192 (478)
Q Consensus       176 ~-~g~~~~p~i~~~l~~~  192 (478)
                      . +|.+=+|++-|.+.|.
T Consensus       564 rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       564 RVFATIPAPILFGLLIDV  581 (633)
T ss_pred             HHhcCCChhHHHhhhhhc
Confidence            4 7889999998888774

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.51  E-value=0.00058  Score=57.64  Aligned_cols=96  Identities=21%  Similarity=0.176  Sum_probs=72.3

Q ss_pred             CchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHH
Q 011743          356 VLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQY  435 (478)
Q Consensus       356 ~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  435 (478)
                      ....+..++..++.+++.|+..|           ++.+..+..+.+++.+...+.               .+.+.+....
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~-----------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~   58 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGR-----------KPVLLVGLFIFVLSTAMFALS---------------SNITVLIIAR   58 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcch-----------hHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHH
Confidence            34556777777777776555433           344666766666666655543               3556677778


Q ss_pred             HHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          436 CIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       436 ~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      ++.+++.+...+....++.+..|++.|++++++.+...++|.
T Consensus        59 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  100 (141)
T TIGR00880        59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGP  100 (141)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHH
Confidence            999999999999999999999999999999999998877664

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.062  Score=53.50  Aligned_cols=156  Identities=12%  Similarity=0.024  Sum_probs=90.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhh-----hccchhHHHHH
Q 011743           13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD-----TYLSRFATCLV   87 (478)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laD-----r~~Gr~~~~~~   87 (478)
                      -.+.+..+++. .+.+..-+|+..-+|..+ +.-|.|-++.+.....+  .=+-.-++...+.|     | +||||.-++
T Consensus        29 d~~~illLl~L-YllQGiP~GL~~~iP~lL-~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~GrrksWvv  103 (510)
T KOG3574|consen   29 DRSSILLLLFL-YLLQGIPLGLIGAIPLLL-QAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKSWVV  103 (510)
T ss_pred             hhhhHHHHHHH-HHHcCCchhHhhhhHHHh-cCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccceee
Confidence            33445544444 444555577777555444 46677777765443322  22233456777888     8 999997653


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhH
Q 011743           88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY  167 (478)
Q Consensus        88 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~  167 (478)
                      =. -+.+|.++..++...   .++-.|+.++|+   ........++.-+..+.-.-++-...-.+..+++      .+-+
T Consensus       104 p~-q~llG~~mllLs~~v---~~~~g~ng~~p~---v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------lgya  170 (510)
T KOG3574|consen  104 PC-QYLLGLFMLLLSYLV---DRGLGGNGGLPN---VVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------LGYA  170 (510)
T ss_pred             eh-HHHHHHHHHHHhhCC---CcccccCCCCcc---hHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------cCch
Confidence            32 234455555554311   111113443322   1222233456667777777788777778877766      7777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011743          168 FNFYLFATTLAAMIGVTAI  186 (478)
Q Consensus       168 ~~~~~~~~~~g~~~~p~i~  186 (478)
                      .+-...+.+.|.+++-.+-
T Consensus       171 ST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  171 STCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hHHHHHHHhhhHHhhccee
Confidence            7777778888888776543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.41  E-value=0.0051  Score=54.10  Aligned_cols=111  Identities=11%  Similarity=0.056  Sum_probs=81.2

Q ss_pred             chhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHH
Q 011743           49 DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY  128 (478)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (478)
                      ++..-..-+++......+..++++.+.++ +|.|+++.+|.+.+.+-.......                    +.+.++
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~~--------------------~~~~l~   93 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFYP--------------------NSYTLY   93 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHH
Confidence            33333344445555566666778888999 999999999998877544333211                    567788


Q ss_pred             HHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 011743          129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI  186 (478)
Q Consensus       129 ~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  186 (478)
                      .+-++.|+|.+..+.+...++.+..++++      +++..+++....+.+..+|..+.
T Consensus        94 ~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   94 PASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999877665      77777777666677766665544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.34  E-value=0.00029  Score=71.17  Aligned_cols=180  Identities=11%  Similarity=0.023  Sum_probs=117.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhH--------HHHHHHHHHHH-HhhHHHHHhhhccchhHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASN--------TLTNFFGSTFL-LCLVGGFISDTYLSRFATC   85 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~--------~~~~~~~~~~~-~~~~~G~laDr~~Gr~~~~   85 (478)
                      +.+...+...++--.++|+...+...-+. .+|+.+.+...        ...+...+..+ +.+++..+.|+ +|||+..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence            33444444555555666665555444333 34444433222        22333333333 77788899999 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhh
Q 011743           86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA  165 (478)
Q Consensus        86 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~  165 (478)
                      +.+.+++++..+.+....+-   +++           ....++.--+.+-++.-+-..+....-+|.||.+-      |+
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~---~~~-----------~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R~  441 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQ---LEN-----------TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------RS  441 (538)
T ss_pred             HhhHHHHHHHHHHHcCCccc---ccc-----------cCceeehHHHHHHHHhcCCCceeEEeehhhchHHH------hh
Confidence            99999998877776654310   001           11112222222334444444555667789999888      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          166 SYFNFYLFATTLAAMIGVTAIVYVFI-----DQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       166 ~~~~~~~~~~~~g~~~~p~i~~~l~~-----~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .+.++.....-+|+.+|...-.++.+     ..+.+..|++.+.+++++.+..++.
T Consensus       442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             hhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            99999999999999999988888888     7789999999999988888776654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.92  E-value=0.027  Score=59.18  Aligned_cols=120  Identities=8%  Similarity=-0.113  Sum_probs=87.1

Q ss_pred             HhHHHHHHHHHHHHHhhHHHHHhhhccchh-H------HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHH
Q 011743           53 ASNTLTNFFGSTFLLCLVGGFISDTYLSRF-A------TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAA  125 (478)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~-~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (478)
                      .++..++..+...+..|+.+++=.| .+|| |      =+.+|+++.++++..+.++...    ..+.|+      .+..
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~~------~s~~  378 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARW----SAMYGH------SSLP  378 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCC------cCHH
Confidence            4566667777777778888888666 5332 1      2667888888888877765421    011121      3677


Q ss_pred             HHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHhh
Q 011743          126 YFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT-TLAAMIGVTAIVYV  189 (478)
Q Consensus       126 ~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~i~~~l  189 (478)
                      ++++..+++++|.=...|...+++++..|++-      ++..++.++... .+|..++..+.+..
T Consensus       379 wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        379 LMVLGLAVMGFAELFIDPVAMSQITRIEIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHHHHHHChHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999999999999999999999887      899999987643 57777666666555

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.90  E-value=0.008  Score=59.71  Aligned_cols=151  Identities=15%  Similarity=0.093  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHc-ccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccch-hHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYF-KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR-FATCLVFGTLEV   93 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~   93 (478)
                      ..+..+....+.-.-.|..+-+...++ ...+|+++.|.|-+...-.+...+.+..-+...||+.|. +-....++.+..
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            345555544444444444444444444 678999999999888877777777777777777775433 223344444444


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      -...+...+.                   ....++++..+-.+..+...++...++....|.++      |+...|....
T Consensus       341 P~~llls~~~-------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~S  395 (451)
T KOG2615|consen  341 PAFLLLSLAR-------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRS  395 (451)
T ss_pred             HHHHHHhccc-------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHH
Confidence            4444444432                   56778899999999999999999999999999998      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 011743          174 ATTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~  191 (478)
                      ...++-++||.++|.+..
T Consensus       396 l~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  396 LGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHhhhhhhheeEE
Confidence            999999999999987754

>PTZ00207 hypothetical protein; Provisional

Probab=96.89  E-value=0.0042  Score=66.44  Aligned_cols=177  Identities=8%  Similarity=-0.031  Sum_probs=120.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHccccc-CCchhh--HhHHHHHHHHHHHHHhhHHHHHhhhccchhH--------
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEM-HFDIAG--ASNTLTNFFGSTFLLCLVGGFISDTYLSRFA--------   83 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~l-g~~~~~--~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~--------   83 (478)
                      ...|.+++..++...+-..+.-++. ++.+.+ |.+..+  ....++++.++++++.+.+|+++.. .-||+        
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt  430 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPIT  430 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchh
Confidence            4477777777776665554444443 344556 663322  2237899999999999999999833 33333        


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 011743           84 -TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK  162 (478)
Q Consensus        84 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~  162 (478)
                       .+.+..+ ..++++++.+..                   ....++++-++.|++.|...+...+.++|.|. ++     
T Consensus       431 ~~l~~~~~-~~~~~lll~~~~-------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~-----  484 (591)
T PTZ00207        431 IALFIPSV-CIITMLTLFLTL-------------------PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KD-----  484 (591)
T ss_pred             HHHHHHHH-HHHHHHHHHHHC-------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc-----
Confidence             2333333 566666666542                   12568899999999999999999999999999 66     


Q ss_pred             hhhhHHHHHHHHHHHHHHHH-HHHHHhhhcc-------------chhHHHHHHHHHHHHHHHHHHHhcCcce
Q 011743          163 ALASYFNFYLFATTLAAMIG-VTAIVYVFID-------------QGWWLGFLISSVATLIGLIALAIGKPFY  220 (478)
Q Consensus       163 ~r~~~~~~~~~~~~~g~~~~-p~i~~~l~~~-------------~~~~~~f~i~~~~~~~~~~~~~~~~~~~  220 (478)
                       -++-++..+.+.-+|..+- -.+.|.+-+.             .-++.+|++.+.+++++.++....+-++
T Consensus       485 -~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        485 -PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             -hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence             6788888777777777654 2344444221             1278899999888888887766554433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.89  E-value=0.0093  Score=46.41  Aligned_cols=66  Identities=9%  Similarity=0.017  Sum_probs=59.5

Q ss_pred             HHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 011743           37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA  103 (478)
Q Consensus        37 ~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~  103 (478)
                      .+.+.++++.++|.++++++.+...+++.++.+...++.++ ..+++.+..+.+...+..+.+.+..
T Consensus        13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34456788999999999999999999999999999999999 7889999999999999998888764

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.85  E-value=0.0061  Score=63.41  Aligned_cols=126  Identities=13%  Similarity=0.110  Sum_probs=107.8

Q ss_pred             HHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHH-HHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 011743           38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGG-FISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS  116 (478)
Q Consensus        38 l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  116 (478)
                      +..|+...++++..+.+...+.......+...+.. .+.-. +|-|+++..|+....+...+.++++             
T Consensus       264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~-------------  329 (463)
T KOG2816|consen  264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT-------------  329 (463)
T ss_pred             EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc-------------
Confidence            35788889999999999999999999999998887 77777 8999999999999999999998876             


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011743          117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF  190 (478)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  190 (478)
                            +.++.+....+.++. +...|...++++.+.++++      +++.+++......+.+.++|.+-+.+.
T Consensus       330 ------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  330 ------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             ------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence                  566666666655444 7778999999999999988      999999999999999998888777653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.83  E-value=0.17  Score=55.16  Aligned_cols=311  Identities=11%  Similarity=-0.009  Sum_probs=180.8

Q ss_pred             chhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHH
Q 011743           49 DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY  128 (478)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (478)
                      ..........++.....+.++.....+|-.-|+-..+..-.....+..+...+.... .          .+.........
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~-a----------~~~~~~~~~~~   86 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG-A----------IPSSGHPLHDL   86 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-c----------CcccccchHHH
Confidence            334566778888999999999999999996666666666666666666666555420 0          00111134455


Q ss_pred             HHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccch-hHH------HHH-
Q 011743          129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG-WWL------GFL-  200 (478)
Q Consensus       129 ~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~-~~~------~f~-  200 (478)
                      +....+.++.++..+..+.+.+++.+..+   ...+.+..+++++..+.+.+ |..++..+..... +..      .|. 
T Consensus        87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~~~~~  162 (654)
T TIGR00926        87 LDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQDCYPL  162 (654)
T ss_pred             HHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCcchHH
Confidence            67777899999999999999999987654   44445688888888888876 4556655544333 211      233 


Q ss_pred             HHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhh
Q 011743          201 ISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLD  280 (478)
Q Consensus       201 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (478)
                      ..++.+++.++.++.+...++..++++.+.....++.......++                            ++  +  
T Consensus       163 aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~----------------------------~~--~--  210 (654)
T TIGR00926       163 AFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR----------------------------KR--F--  210 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH----------------------------Hh--h--
Confidence            334444455555555544444434333222222222211111000                            00  0  


Q ss_pred             hhccCCCCCCCCCCcccc--cchhhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCch
Q 011743          281 KAAIVPKDSTAAAPWRVC--TVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLP  358 (478)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (478)
                          .....+....|.++  .+..+++.+...+++.++...+.+++.+.++......+....++..+.+...+.....++
T Consensus       211 ----~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq  286 (654)
T TIGR00926       211 ----STRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQ  286 (654)
T ss_pred             ----ccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHH
Confidence                00000001223222  222334567888888888888888888877666666666666665443333344556677


Q ss_pred             hHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 011743          359 LLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVK  413 (478)
Q Consensus       359 ~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~  413 (478)
                      .+-.+...++...+..++.+++.+   .-.+.+++.-+.+.+.++.+.....+..
T Consensus       287 ~~n~L~IIil~Pi~~~~lyp~l~~---~~~~ls~l~k~~iG~~la~la~~va~~v  338 (654)
T TIGR00926       287 VVNPLLILIFVPIFDYIVYPAIAK---CGTRFTSLRKMAVGGLLAALSFFVAALV  338 (654)
T ss_pred             HHHHHHHHHhHHHHHHhHHHHHHh---cCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777666677777631   1123455666666666666555555433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.68  E-value=0.0014  Score=66.38  Aligned_cols=166  Identities=17%  Similarity=0.124  Sum_probs=118.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhc---cchhHHHHHHHH-
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATCLVFGT-   90 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~~~-   90 (478)
                      +.+..+....+.-.+++-.=..++++|++ .+|.+....+.+-.+.-+...+.+|+.|..+||-   |||||-++.... 
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            44555555566666665544567888865 7999999999999999999999999999999974   899887776654 


Q ss_pred             HHHHHHHHHHHHhhcc-cCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           91 LEVLSLVMLTIQAYSK-SLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        91 ~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ..+++.++...+..+. .+.++..   ..-|......++++.-+.=+..-..+...-++++|+...++.+     .++.+
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~---~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~-----~~Ans  182 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNER---KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK-----TRANS  182 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcc---cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh-----hccch
Confidence            5666777766654221 1111100   0112345667777777777888888889999999998876621     12888


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 011743          170 FYLFATTLAAMIGVTAIVYV  189 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l  189 (478)
                      ++...+.+|..+|...+++.
T Consensus       183 ~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hHHHHHHhcceeeeeccccc
Confidence            88889999999988877654

>PRK03612 spermidine synthase; Provisional

Probab=96.61  E-value=0.11  Score=55.09  Aligned_cols=161  Identities=14%  Similarity=0.036  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHH-HHHHHHH-HHHHHHHHH
Q 011743           25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-VFGTLEV-LSLVMLTIQ  102 (478)
Q Consensus        25 ~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~-i~~~~~~~~  102 (478)
                      ++..++..+.-....-.+...+|-+..+.+.+++++..+..++..++|+++++ .-|+.... ++..+.. ++..++...
T Consensus        24 f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~~  102 (521)
T PRK03612         24 FVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYAA  102 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444555678888999999999999999999999988755 22222211 1111111 111111111


Q ss_pred             hhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 011743          103 AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG  182 (478)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  182 (478)
                      ..  ..            .......+...++.++..|+..|....+..+... ++      -++..+-.|....+|+++|
T Consensus       103 ~~--~~------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G  161 (521)
T PRK03612        103 FA--FQ------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVG  161 (521)
T ss_pred             HH--HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHH
Confidence            10  00            0011222333445666667777766655544322 11      3456677778888888888


Q ss_pred             HHHHHhhhc-cchhHHHHHHHHHHHH
Q 011743          183 VTAIVYVFI-DQGWWLGFLISSVATL  207 (478)
Q Consensus       183 p~i~~~l~~-~~~~~~~f~i~~~~~~  207 (478)
                      ..+.+++.- ..|-....++.+.+.+
T Consensus       162 ~l~~~~vLlp~lG~~~t~~~~a~l~~  187 (521)
T PRK03612        162 GLAFPFLLLPRLGLIRTAALTGSLNL  187 (521)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            888886654 4665544444444443

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.57  E-value=0.034  Score=57.58  Aligned_cols=99  Identities=6%  Similarity=-0.042  Sum_probs=75.2

Q ss_pred             CCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHH
Q 011743          352 PSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWL  431 (478)
Q Consensus       352 ~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  431 (478)
                      +.+......+-.+.....+.+.|++           +.++.+.++.+.-++..++.++.               .++..+
T Consensus        65 G~I~s~F~ysYal~qIp~GlLaDrl-----------G~K~vL~l~~l~Wsl~t~L~~fa---------------~Sl~~L  118 (511)
T TIGR00806        65 NEIIPVLPYSHLAVLVPVFLLTDYL-----------RYKPVLVLQALSFVCVWLLLLLG---------------TSVWHM  118 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence            3333334444455555555554443           44566778887777777777776               467888


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccC
Q 011743          432 SFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLAT  477 (478)
Q Consensus       432 ~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~  477 (478)
                      ...-++.|++|+... ....++++..|+++|++++|+++....+|.
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~  163 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGV  163 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999 999999999999999999999999988874

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.49  E-value=0.055  Score=57.40  Aligned_cols=145  Identities=7%  Similarity=-0.046  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHH
Q 011743           16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS   95 (478)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~   95 (478)
                      ....+.+..+.....||++....     ..+|.+......+...   .........+.+.|+ +|||.....+..+..++
T Consensus       323 ~~~~~~~~~~~~~~~y~gl~~~~-----~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~-~gR~~~~~~~~~~~~~~  393 (521)
T KOG0255|consen  323 RTLYLLFIWFVFSLVYYGLSLNV-----SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPE-FGRRPPLFLSLFLAGIG  393 (521)
T ss_pred             HHHHHHHHHHHHhHHHHhhhhhh-----hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            34444444444455555444332     3355444433333333   444455566899999 89999999999999998


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT  175 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~  175 (478)
                      .+.......                ....+...+...+...+.+...-....+.+|++|+..      |..+.+......
T Consensus       394 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~  451 (521)
T KOG0255|consen  394 LLLFGWLPD----------------DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAA  451 (521)
T ss_pred             HHHHHHhhc----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHH
Confidence            888876541                1110112222222223333333444788899999887      899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 011743          176 TLAAMIGVTAIVYVFI  191 (478)
Q Consensus       176 ~~g~~~~p~i~~~l~~  191 (478)
                      .+|..++|.+......
T Consensus       452 ~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  452 RLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999987755543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.38  E-value=0.029  Score=57.05  Aligned_cols=183  Identities=16%  Similarity=0.089  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhH-HHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVFGTLEVLS   95 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~~~~~~~i~   95 (478)
                      ..++++..-+....+|++...+- -....-|+++..+|.+-....+.++++..+.|.++|| ....| ++++......++
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~-~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk-tk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLN-LALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADK-TKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhh-hccccccCCccccchhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHH
Confidence            44444555555555555554443 2234567888899999999999999999999999999 66544 444444444444


Q ss_pred             HHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCC-CCCChhhhhhhhhHHHHHHHH
Q 011743           96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQF-DENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~-~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      ...+.....       .        ....+.++....+.|...-...|.-.-+..|.. |..+       +.-.|+....
T Consensus       346 ~~~l~~~t~-------~--------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~~  403 (480)
T KOG2563|consen  346 TLMLLTCTL-------F--------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNLS  403 (480)
T ss_pred             HHHHHHhhc-------c--------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEee
Confidence            322222211       0        113444556666777777778887777766654 4433       3445555555


Q ss_pred             HHHHHHHHHHHHHhhhccch----hHHHHHHHHHHHHHHHHHHHhcCcceeec
Q 011743          175 TTLAAMIGVTAIVYVFIDQG----WWLGFLISSVATLIGLIALAIGKPFYRIQ  223 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~----~~~~f~i~~~~~~~~~~~~~~~~~~~~~~  223 (478)
                      .++-+++-..+.+...+..+    +...-+...+...+.+++..+.+++++..
T Consensus       404 gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  404 GQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             hhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            55555555555666665555    44333334444455555556666655443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.90  E-value=0.24  Score=53.86  Aligned_cols=169  Identities=14%  Similarity=0.102  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHH-HHHHhhHHHHHhhhc-cchhHHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGS-TFLLCLVGGFISDTY-LSRFATCLVFGTLEVL   94 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~i   94 (478)
                      .....+...++...+-+.++|+|-|+.+++|.++..+..+.+...+. ..++..++|++.-|+ ++.|.+..+.++...+
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            33456788999999999999999999999999999999999666554 667778999999985 5556666666655555


Q ss_pred             HHHHHHHHhhc-----------------c--------------------cCCCCCCCCC---------------------
Q 011743           95 SLVMLTIQAYS-----------------K--------------------SLHPPDCGKS---------------------  116 (478)
Q Consensus        95 ~~~~~~~~~~~-----------------~--------------------~~~~~~~~~~---------------------  116 (478)
                      ..+.....-.+                 +                    ....|-||.+                     
T Consensus       474 ~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~  553 (735)
T KOG3626|consen  474 SLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDG  553 (735)
T ss_pred             HHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCC
Confidence            44432111000                 0                    0000111111                     


Q ss_pred             -----cc---c----------------c-chhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743          117 -----SC---L----------------K-GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus       117 -----~~---~----------------~-~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                           ||   +                + ...+..+++..++..+..+...+...-++-+.+++++      |.-+.|+.
T Consensus       554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~~  627 (735)
T KOG3626|consen  554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGFQ  627 (735)
T ss_pred             ceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHHH
Confidence                 11   1                1 1233444444555556666666777778889999988      89999999


Q ss_pred             HHHHH-HHHHHHHHHHHhhhc
Q 011743          172 LFATT-LAAMIGVTAIVYVFI  191 (478)
Q Consensus       172 ~~~~~-~g~~~~p~i~~~l~~  191 (478)
                      .+... +|.+=+|++-|++.+
T Consensus       628 ~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  628 WMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             HHHHHHHhcCCchHhhhhhHh
Confidence            87765 788999999998864

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.63  E-value=3.4  Score=43.05  Aligned_cols=51  Identities=12%  Similarity=0.208  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhccCC
Q 011743          428 LFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHLATS  478 (478)
Q Consensus       428 ~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~lg~~  478 (478)
                      +..++.++++..+..-..++..++|-++++++..=|++|.+.|...++|+.
T Consensus       405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt  455 (544)
T PF13000_consen  405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT  455 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC
Confidence            345667888888898999999999999999999999999999999999973

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.43  E-value=0.004  Score=66.21  Aligned_cols=168  Identities=11%  Similarity=0.070  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHH-HHHHHhhHHHHHhhhc-cchhHHHHHHHHHHHHHH
Q 011743           19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTY-LSRFATCLVFGTLEVLSL   96 (478)
Q Consensus        19 ~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~i~~   96 (478)
                      ...+...++.+...++.+|+|.|+++++++++.+++.+.++..+ +..++.+++|++..|+ ++.|+++.+..+...++.
T Consensus       309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~  388 (539)
T PF03137_consen  309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV  388 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence            34567778888888999999999999999999999999877766 5778889999999995 455666666665555544


Q ss_pred             HHHH-----HHhhcc--cCCCCC------CC--C------------------Ccccc--chhHHHHHHHHHHHHhccccc
Q 011743           97 VMLT-----IQAYSK--SLHPPD------CG--K------------------SSCLK--GAIAAYFYGSLYLYSLGCGGN  141 (478)
Q Consensus        97 ~~~~-----~~~~~~--~~~~~~------~~--~------------------~~~~~--~~~~~~~~~~~~l~gig~g~~  141 (478)
                      ++..     -..+.+  -+..++      ..  +                  ..|+.  ...+..+++..++..+..+..
T Consensus       389 ~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~  468 (539)
T PF03137_consen  389 ILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMS  468 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhc
Confidence            3311     111111  001111      00  0                  01111  123455556566666666666


Q ss_pred             cccccccccCCCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHhhhcc
Q 011743          142 RGTLPALGAGQFDENDPKGAKALASYFNFYLFAT-TLAAMIGVTAIVYVFID  192 (478)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~i~~~l~~~  192 (478)
                      .......+-+.+|+++      |.-+.|+..... -+|.+=||++-|.+.+.
T Consensus       469 ~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  469 QVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             ccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            6666677779999888      899999988665 57889999998888774

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.69  E-value=0.87  Score=47.01  Aligned_cols=135  Identities=10%  Similarity=0.002  Sum_probs=103.4

Q ss_pred             HHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 011743           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (478)
Q Consensus        36 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  115 (478)
                      ..+..|+..+ |+++...|..-+...+....+.++..++.+| +|..|+=.++.........+...+-..+.       .
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~-------~  349 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPG-------S  349 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCC-------C
Confidence            4567788877 9999999999999999999999999999999 89999988888876655444433221110       0


Q ss_pred             CccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011743          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIV  187 (478)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  187 (478)
                      ..  ...+...++.+..+-=+|--++.-++.-++.|..|+++      |+...+......++.-.+...++-
T Consensus       350 ~~--~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  350 PF--SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             Cc--hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence            00  02255666666666668888999999999999999888      999999999888888877765544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=93.47  E-value=0.66  Score=48.07  Aligned_cols=143  Identities=10%  Similarity=-0.096  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHhhhccchh-------HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHH
Q 011743           54 SNTLTNFFGSTFLLCLVGGFISDTYLSRF-------ATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY  126 (478)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~G~laDr~~Gr~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (478)
                      .+..+...+...++.|+..++--+ .+++       .-+-++++++..+++++.....   ...++.|      ..+.++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~---~~~~~~~------~~s~~~  396 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAGI---WFGGPSG------LVSVWW  396 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH---hhcCCCC------CcCHHH
Confidence            444555556666777777777666 4544       2455667777777777665521   0011112      237889


Q ss_pred             HHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hhccchhHHHHH
Q 011743          127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY------VFIDQGWWLGFL  200 (478)
Q Consensus       127 ~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~------l~~~~~~~~~f~  200 (478)
                      ++.+.+++++|.=+..|...++++...|+.-      .+..++++......|..++..+.+.      ..+.......|.
T Consensus       397 lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~  470 (498)
T COG3104         397 LVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFG  470 (498)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHH
Confidence            9999999999999999999999999999765      6788888888777787777666652      112234455666


Q ss_pred             HHHHHHHHHHHH
Q 011743          201 ISSVATLIGLIA  212 (478)
Q Consensus       201 i~~~~~~~~~~~  212 (478)
                      ..+...++....
T Consensus       471 ~~g~v~i~~~~~  482 (498)
T COG3104         471 TIGVVAIVIGIL  482 (498)
T ss_pred             HHHHHHHHHHHH
Confidence            665555443333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.73  E-value=0.64  Score=44.33  Aligned_cols=148  Identities=9%  Similarity=0.019  Sum_probs=89.7

Q ss_pred             ccCCchhhH--hHHHHHHHHHHHHHhhHHHHHhhhccchhH---HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 011743           45 EMHFDIAGA--SNTLTNFFGSTFLLCLVGGFISDTYLSRFA---TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL  119 (478)
Q Consensus        45 ~lg~~~~~~--~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  119 (478)
                      .+.-+++++  |.+.+.|..+.+++.-+...+..|  .|.|   .+.+...+......+..+...            ++|
T Consensus       274 aLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~~------------vsP  339 (454)
T KOG4332|consen  274 ALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTSS------------VSP  339 (454)
T ss_pred             cCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHhc------------cCC
Confidence            344344443  677777777777776666555555  2222   344444444433333222210            111


Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 011743          120 KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGF  199 (478)
Q Consensus       120 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f  199 (478)
                      ..+++..-+++-.+.-.+.|.++|.+.-+=.+..|++.      |.+.+++++...|+-.-++-...-.=....+-|..|
T Consensus       340 ~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf  413 (454)
T KOG4332|consen  340 SKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMF  413 (454)
T ss_pred             CcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhh
Confidence            12355555677777888999999999999999999888      999999999888876554322100001123457788


Q ss_pred             HHHHHHHHHHHHH
Q 011743          200 LISSVATLIGLIA  212 (478)
Q Consensus       200 ~i~~~~~~~~~~~  212 (478)
                      -++.+.+.++.+.
T Consensus       414 ~icS~~~~~a~i~  426 (454)
T KOG4332|consen  414 GICSAFLFVASIL  426 (454)
T ss_pred             hhhHHHHHHHHHH
Confidence            8888877766544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.60  E-value=12  Score=39.45  Aligned_cols=162  Identities=9%  Similarity=0.033  Sum_probs=87.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCC---chhhHhHHHHHHHH-HHHHHhhHHHHHhhhccchhHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHF---DIAGASNTLTNFFG-STFLLCLVGGFISDTYLSRFATCLVFGT   90 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~---~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~~   90 (478)
                      +..+.+.+..++..+.|..+.     -+++.+=+   +++....+-.-..+ ...+...+-.+++|+ ++|.|++.+...
T Consensus        24 ~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~   97 (491)
T PF03219_consen   24 KKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIII   97 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence            335555555555555543222     23333322   34444444443333 455556778999999 899998887776


Q ss_pred             HHHHHHHHHHHH--hhcccCCCCCCCC---Cccccc----------hhHHHHHHHHHHHH-hccccccccccccccCCCC
Q 011743           91 LEVLSLVMLTIQ--AYSKSLHPPDCGK---SSCLKG----------AIAAYFYGSLYLYS-LGCGGNRGTLPALGAGQFD  154 (478)
Q Consensus        91 ~~~i~~~~~~~~--~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~~~~l~g-ig~g~~~~~~~~~i~~~~~  154 (478)
                      .+..-+.+.+..  ..-..++|...-.   ...+.+          ++...+++.--+.| +..+   -....+..|.++
T Consensus        98 ~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlS---lLFW~fAN~itt  174 (491)
T PF03219_consen   98 PFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLS---LLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCC
Confidence            665554444432  1112334422200   000000          01122222222221 1111   123667778887


Q ss_pred             CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011743          155 ENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI  191 (478)
Q Consensus       155 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  191 (478)
                      .++      -.|.++++..+.|+|..++..+..++.+
T Consensus       175 ~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  175 VEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666      5689999999999999999988888776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=91.52  E-value=8  Score=33.93  Aligned_cols=73  Identities=5%  Similarity=-0.018  Sum_probs=56.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHH
Q 011743          387 ITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLL  466 (478)
Q Consensus       387 ~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~  466 (478)
                      +++++-+.+|.++.++-......                .+.+.+.+.-++.|+|..+.+...-.+..+...++.+++..
T Consensus        64 lg~K~sm~lg~~~y~~y~~~~~~----------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~  127 (156)
T PF05978_consen   64 LGPKWSMILGSLGYAIYIASFFY----------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNT  127 (156)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHH
Confidence            36667788887766543332211                35577788889999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 011743          467 HLHFCHCHL  475 (478)
Q Consensus       467 g~~~~~~~l  475 (478)
                      +++......
T Consensus       128 ~ifw~i~~~  136 (156)
T PF05978_consen  128 GIFWAIFQS  136 (156)
T ss_pred             HHHHHHHHH
Confidence            988776553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=89.38  E-value=0.38  Score=50.02  Aligned_cols=196  Identities=12%  Similarity=-0.007  Sum_probs=111.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhH----hHHHHHHHHHHHHHhhHHHHHh-hhccchhHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGA----SNTLTNFFGSTFLLCLVGGFIS-DTYLSRFATCLVF   88 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~----~~~~~~~~~~~~~~~~~~G~la-Dr~~Gr~~~~~~~   88 (478)
                      ++..+.+.+..+...+.+..+-...+.+....++.+.+++    +.+.++..+......+.-++.. -+ +-+|+.+..+
T Consensus       261 ~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~-i~~r~~~~~g  339 (488)
T KOG2325|consen  261 WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGK-IDKRRIILLG  339 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh-hccceeeeeh
Confidence            4556666777777777776656666666666677766665    4444444444444444444433 22 2335555545


Q ss_pred             -HHHHHHHHHHHH-HHhhc-ccC-CCCCC-CC----Ccc-ccc--hhHHHHHHH-HHHHHhccccccccccccccCCCCC
Q 011743           89 -GTLEVLSLVMLT-IQAYS-KSL-HPPDC-GK----SSC-LKG--AIAAYFYGS-LYLYSLGCGGNRGTLPALGAGQFDE  155 (478)
Q Consensus        89 -~~~~~i~~~~~~-~~~~~-~~~-~~~~~-~~----~~~-~~~--~~~~~~~~~-~~l~gig~g~~~~~~~~~i~~~~~~  155 (478)
                       +..+..-.+.+. ..... |.. ++.++ |.    ..| .+.  .+.+.+++. .++.|++...+.....++.++...+
T Consensus       340 ~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp  419 (488)
T KOG2325|consen  340 FLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGP  419 (488)
T ss_pred             HHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCC
Confidence             333332222211 11000 111 11111 11    011 000  122333333 3446666666667778889999998


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          156 NDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       156 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      .+      .+...+.+.....++..+||.+...+....|.++...+.++..++...++...
T Consensus       420 ~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~  474 (488)
T KOG2325|consen  420 RD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF  474 (488)
T ss_pred             cc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            87      78888888888999999999999888888888888887777666555544433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.12  E-value=2.8  Score=43.10  Aligned_cols=157  Identities=10%  Similarity=-0.021  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCC
Q 011743          308 ILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGI  387 (478)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~  387 (478)
                      ++...........+.|..-.++.+.+.++. +..      ..-.+.++.+.++..++.+|+.+...|+.--|..      
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvp------hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G------   99 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQSL-GVP------HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG------   99 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCC------cccccccccccccccceecccccccccccccccc------
Confidence            344444555666777888777777776542 233      2345778888999999999999998887544432      


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C-CCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHH-
Q 011743          388 TQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQ-S-PPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTL-  464 (478)
Q Consensus       388 ~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~-  464 (478)
                      +++--+..+.+..++++++..+....-....++ + .+.+-.+...+..+.+.=++.-.+..+.-++..+..-.+.|-+ 
T Consensus       100 RRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~  179 (498)
T KOG0637|consen  100 RRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR  179 (498)
T ss_pred             cccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc
Confidence            223346777788888888777764322222222 1 1223455556667777777877888888889888887666666 


Q ss_pred             HHHHHHHHhhccC
Q 011743          465 LLHLHFCHCHLAT  477 (478)
Q Consensus       465 ~~g~~~~~~~lg~  477 (478)
                      +.+.+.++.++||
T Consensus       180 Ans~f~~f~avGn  192 (498)
T KOG0637|consen  180 ANSVFSFFMAVGN  192 (498)
T ss_pred             cchhHHHHHHhcc
Confidence            9999999999887

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=88.64  E-value=0.44  Score=49.42  Aligned_cols=158  Identities=16%  Similarity=0.031  Sum_probs=89.2

Q ss_pred             ccccC---CchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 011743           43 KNEMH---FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL  119 (478)
Q Consensus        43 ~~~lg---~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  119 (478)
                      .++++   +++...+.+..+..++..++..+....--+ +.-|+++..+.++.++..+.-.+.-. .+  .-++|.+   
T Consensus       244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~-~~~R~~~~~t~~~~~~~~l~~~~lv~-~~--n~~~Gi~---  316 (433)
T PF03092_consen  244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSN-WSWRRIFVVTTLVSVLASLFDLLLVT-RW--NLDLGIP---  316 (433)
T ss_pred             eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcccEEEEE-EE--eeeeCcC---
Confidence            34566   888888888877777766666655433333 35677777666665554433211100 00  0012322   


Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccch-----
Q 011743          120 KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG-----  194 (478)
Q Consensus       120 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~-----  194 (478)
                         +.+..+.--++..+..+...-....++++..|++.      -++.+++.....|+|..++..++..+.+.++     
T Consensus       317 ---d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~  387 (433)
T PF03092_consen  317 ---DQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDD  387 (433)
T ss_pred             ---CeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence               11111222223333333333444566889999887      6899999999999999999999888865433     


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHhc
Q 011743          195 ---WWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       195 ---~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                         -++..+++.++.++.+....+.
T Consensus       388 f~~l~~lili~~~~~ll~l~ll~lL  412 (433)
T PF03092_consen  388 FSNLWLLILICSVIQLLPLPLLFLL  412 (433)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHc
Confidence               3344455555554444444333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=87.72  E-value=2.1  Score=42.46  Aligned_cols=48  Identities=8%  Similarity=0.061  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHh
Q 011743          426 ISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHC  473 (478)
Q Consensus       426 ~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~  473 (478)
                      ..+|++=..|++...--++..+....-+++....+.=|..-|+|++..
T Consensus       324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvA  371 (433)
T KOG3810|consen  324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVA  371 (433)
T ss_pred             cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHH
Confidence            467888888999888888888888888888888999999999888764

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.06  E-value=12  Score=39.05  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=65.6

Q ss_pred             HHHHHHhhHHHHHh---hhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC--CCCCCCccccchhHHHHHHHHHHHHh
Q 011743           62 GSTFLLCLVGGFIS---DTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP--PDCGKSSCLKGAIAAYFYGSLYLYSL  136 (478)
Q Consensus        62 ~~~~~~~~~~G~la---Dr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~gi  136 (478)
                      .+..++....+.+.   ++ +||++++.++.++..++.++..+..  |...|  +.-... ...+.+.....+--+++|+
T Consensus       290 ~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~~t~~~~-~~~~~~~~~~~ii~~l~G~  365 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLRPTDSPP-LLFTPSYYLALIIGFLLGF  365 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccCCCCCCcccc-cccccchhHHHHHHHHHhh
Confidence            33444445555565   45 7899999999999888887776654  22211  000000 0001123344445577999


Q ss_pred             ccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 011743          137 GCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM  180 (478)
Q Consensus       137 g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  180 (478)
                      +-+......+.++++.+| ++      |..+++++..-..++..
T Consensus       366 ~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  366 GDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASC  402 (461)
T ss_pred             HHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHH
Confidence            999999999999999995 44      56666665544444443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.32  E-value=3.8  Score=42.53  Aligned_cols=155  Identities=10%  Similarity=-0.043  Sum_probs=87.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccc-cCCchh-hHhHHHHHHHHHHHHHhhHHHHHhhhccchh-HHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNE-MHFDIA-GASNTLTNFFGSTFLLCLVGGFISDTYLSRF-ATCLVFGTL   91 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~-lg~~~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~-~~~~~~~~~   91 (478)
                      |.+|..++..++..+....+.|-+....+.+ .+.+.. -.-.+..+|.++..++..+..+.. . -++| +.+.+..+.
T Consensus       269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~  346 (437)
T TIGR00939       269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFL  346 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHH
Confidence            5566666665555554444444433333222 122332 334566677777777776554431 1 1222 244455555


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccc-cchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCL-KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF  170 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~  170 (478)
                      -.+-..++.++..-+    ..+    .| .-.+.+..++..++.|+..|........+..+..++++      |..+-.+
T Consensus       347 R~iFIPlf~lcn~~~----~~~----~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~  412 (437)
T TIGR00939       347 RVLFIPLFLLCNYPQ----RSR----LPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGAL  412 (437)
T ss_pred             HHHHHHHHHHhcCCc----ccc----CCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHH
Confidence            555555544443110    000    00 01255667777899999999999888888888887655      6677777


Q ss_pred             HHHHHHHHHHHHHHH
Q 011743          171 YLFATTLAAMIGVTA  185 (478)
Q Consensus       171 ~~~~~~~g~~~~p~i  185 (478)
                      ...+.++|-..|..+
T Consensus       413 ~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       413 MVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777777654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=85.57  E-value=7  Score=39.90  Aligned_cols=61  Identities=7%  Similarity=-0.081  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011743          123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV  189 (478)
Q Consensus       123 ~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  189 (478)
                      +.+.+++..+..|+..|..+.+....+.|..|+++      |+-+++....+-++|..++..++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            56777777888999999999999999999888777      88999988888888888877666544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	478
2xut_A	524	Proton/peptide symporter family protein; transport	8e-81
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  259 bits (663), Expect = 8e-81
 Identities = 79/472 (16%), Positives = 159/472 (33%), Gaps = 50/472 (10%)

Query: 15  RACTFVFVLSALENMGFIANGIS--MVLYFKNEMHFDI------AGASNTLTNFFGSTFL 66
           R   ++    A E   F   G+   +  +    +   I      A A +   +F    + 
Sbjct: 12  RQIPYIIASEACERFSFY--GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYF 69

Query: 67  LCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY 126
             L+GG+I+D +  ++ T L    +  +    L I  +S                     
Sbjct: 70  FPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG------------------ 111

Query: 127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186
           FY  L+L +LG GG +  + +    QFD+++          F+ + F     +     ++
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---LAQKAFDMFYFTINFGSFFASLSM 168

Query: 187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKL 246
             +  + G  + F I  V   +  +   +G+  Y    P          VI  A+  +  
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVE 228

Query: 247 SLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIV-------PKDSTAAAPWRVCT 299
              +    L  I  +        IP       L  A ++                 +   
Sbjct: 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHP 288

Query: 300 VTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPL 359
              V+ V+ + R++ + A      +   Q  +  + Q   M             +  L  
Sbjct: 289 DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMV---KPQWFEPAMMQALNP 345

Query: 360 LFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFN 419
           L + +LIP   F+  P   ++       T L+++G G+ ++ +S  + G +++       
Sbjct: 346 LLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMMDGGS- 401

Query: 420 QSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFC 471
                 +S+FW    Y +    ++      LEF Y +AP  M+  ++     
Sbjct: 402 -----ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTL 448

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 28/211 (13%)

Query: 15  RACTFVFVLSALENMGFIANGISMVLYF-----KNEMHFDIAGASNTLTNFFGSTFLLCL 69
              + +F+    E   +      ++ Y        ++H   A A++ +  +    +L   
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 70  VGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129
           +GGF++D  +         G L +L  ++L +        P             A+  +G
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--------PFG-----------ASALFG 113

Query: 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189
           S+ L  +G G  +  +  L    +DE+D +      + F+ ++F   L A I    +   
Sbjct: 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAA 169

Query: 190 FIDQGWWLGFLISSVATLIGLIALAIGKPFY 220
               G+ + F ++++   IGL+    G    
Sbjct: 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 42/334 (12%), Positives = 87/334 (26%), Gaps = 95/334 (28%)

Query: 175 TTLAAMIGV---TAIVYVFIDQGWWL--GFLISSVATLIGLIALAIGKPFYRIQQPGESP 229
           T +A    V     +      + +WL      S    L  L  L      Y+I     S 
Sbjct: 164 TWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-----LYQIDPNWTSR 216

Query: 230 LVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDS 289
                        +   ++      +    ++ R+   +         CL    +V  + 
Sbjct: 217 S------------DHSSNIKLRIHSIQA--ELRRLLKSKPYE-----NCL----LVLLN- 252

Query: 290 TAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGS--- 346
                  V          +  +   IL +T      +    + + T    +D    +   
Sbjct: 253 -------VQNAKAWNAFNLSCK---ILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 347 ----------IKVPTPSIP-----VLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQ 391
                     +      +P       P   ++I            A  I    A     +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSI-----------IAESIRDGLATWDNWK 348

Query: 392 RVGVGLVLSVISMTIAGF--VEVKRR----NAFNQS---PPKQISLFWL-SFQYCIFGIA 441
            V    + ++I  ++      E ++     + F  S   P   +SL W    +  +  + 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 442 DMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHL 475
           +      L+E   KE         + +   +  L
Sbjct: 409 NKLHKYSLVEKQPKE-------STISIPSIYLEL 435

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 38  MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS--RFATCLVFGTLEVLS 95
              Y K   HF +  +S     +  +     L+ G++SD      R AT + F TL  ++
Sbjct: 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334

Query: 96  LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE 155
            ++  +              +      +         +Y  G     G      A     
Sbjct: 335 TIVYWMNP------------AGNPTVDMICMIVIGFLIY--GPVMLIGLHALELA----- 375

Query: 156 NDPKGAKALAS-YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA 214
             PK A   A+ +     F     ++     + Y     GW  GF++    +++ +I L 
Sbjct: 376 --PKKAAGTAAGFTGL--FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431

Query: 215 I 215
           +
Sbjct: 432 V 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	478
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.91
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.91
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.85
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.8
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.36
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.22
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.03
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.88
2xut_A	524	Proton/peptide symporter family protein; transport	98.19

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=1.6e-29  Score=263.22  Aligned_cols=406  Identities=17%  Similarity=0.242  Sum_probs=280.1

Q ss_pred             ccccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccc-----cCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchh
Q 011743            8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF   82 (478)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~   82 (478)
                      +..++++|..+.+++..+++++++|++..+++.|+.++     +|++..+++++.+++.++..++.+++|+++|||+|||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r   85 (491)
T 4aps_A            6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR   85 (491)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            34566889999999999999999999999999999988     9999999999999999999999999999999955999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 011743           83 ATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK  162 (478)
Q Consensus        83 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~  162 (478)
                      +++.++.++.+++.+++..+.                   +.+.++++|+++|+|.+...|+..++++|++|+++++   
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~---  143 (491)
T 4aps_A           86 PAVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR---  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH---
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc---
Confidence            999999999999998887653                   6778899999999999999999999999999987632   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeec---CCCC-CchhHHHHHHH
Q 011743          163 ALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ---QPGE-SPLVRVAQVIV  238 (478)
Q Consensus       163 ~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~  238 (478)
                       |++++++++...++|..++|.+++++.+..||++.|++.++..+++.+.+++..++..++   +++. .+..+..+...
T Consensus       144 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (491)
T 4aps_A          144 -RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV  222 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred             -ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence             678888899999999999999999999889999999998887776666655443322221   1111 11111111000


Q ss_pred             --------------HHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhH
Q 011743          239 --------------VAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVE  304 (478)
Q Consensus       239 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  304 (478)
                                    ........+  .++.......... .     .+    ..+... ..+.+      +      ....
T Consensus       223 ~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-----~~----~~~~~~-~~~~~------~------~~~~  277 (491)
T 4aps_A          223 KVSLAVAGFIAIIVVMNLVGWNS--LPAYINLLTIVAI-A-----IP----VFYFAW-MISSV------K------VTST  277 (491)
T ss_dssp             HCCCCCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHHH-H-----HH----HHHHHH-HC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHhccCcc--cccchhhhhHHHH-H-----HH----HHHHHH-Hhhcc------c------ccHH
Confidence                          000111100  0000000000000 0     00    000000 00000      0      0001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcc-cCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCC
Q 011743          305 EVKILARMMPILASTIIMNTCLAQLQTLSVTQGAY-MDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGH  383 (478)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~  383 (478)
                      ++++......++.....++..+.+..+.+...... .+.+    ....+.+...+.+..++..++.+++.+++.||.   
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~---  350 (491)
T 4aps_A          278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ---  350 (491)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC---
Confidence            23333344555656666677776666544333322 2222    245677888889999999999999888776663   


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhH
Q 011743          384 PAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT  463 (478)
Q Consensus       384 ~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g  463 (478)
                         ....+++.+|.++.++++.+.......   ..++   ...+.+++++.+++.+++++...|..++++.+..|+++||
T Consensus       351 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g  421 (491)
T 4aps_A          351 ---PSSPTKFAVGLMFAGLSFLLMAIPGAL---YGTS---GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS  421 (491)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTTHHHHHH---CCCC---TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred             ---CCchHHHHHHHHHHHHHHHHHHHHHHh---cCCC---CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence               355677888999998888877765422   1111   1246778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccC
Q 011743          464 LLLHLHFCHCHLAT  477 (478)
Q Consensus       464 ~~~g~~~~~~~lg~  477 (478)
                      +++|+.++..++|+
T Consensus       422 ~~~g~~~~~~~~g~  435 (491)
T 4aps_A          422 QMMSMWFLSSSVGS  435 (491)
T ss_dssp             SSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=5.5e-29  Score=261.46  Aligned_cols=420  Identities=17%  Similarity=0.295  Sum_probs=272.4

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccC------CchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc-chhH
Q 011743           11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH------FDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFA   83 (478)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Gr~~   83 (478)
                      +.++|.++.+.+..++.++++|++.++++.|+.+++|      ++..+++++.+++.++..++.+++|+++|| + |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~   86 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN   86 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence            4567888999999999999999999999999999999      999999999999999999999999999999 8 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhh
Q 011743           84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA  163 (478)
Q Consensus        84 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~  163 (478)
                      ++.++.++.+++.+++..+.                  .+.+.++++|++.|++.+...|+..++++|++|+++   |..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~  145 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSL  145 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTH
T ss_pred             HHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHH
Confidence            99999999999988877652                  156788899999999999999999999999999877   111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHh
Q 011743          164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKN  243 (478)
Q Consensus       164 r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (478)
                      +...+++.+...++|..++|.+++++.+..||++.|++.++..+++.+.+++.+++.+++++++++..+..+.+....++
T Consensus       146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (524)
T 2xut_A          146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT  225 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhh
Confidence            23455668899999999999999999888899999999888877766666555444333333222222222222222222


Q ss_pred             cCCCCCCCchhhhhhhhh----hccCccccc--------------CCCCccch--hhhhccCCCCCCCCCCcccccchhh
Q 011743          244 RKLSLPDNPEELYEINKI----ERVGTEERI--------------PHTNQFRC--LDKAAIVPKDSTAAAPWRVCTVTQV  303 (478)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v  303 (478)
                      ++.+.+ ......+.+..    ...+.....              +.++..+|  +++.+...            +..+.
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  292 (524)
T 2xut_A          226 KVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH------------PDAAV  292 (524)
T ss_dssp             -CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC------------CSSSS
T ss_pred             hhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc------------cHhHH
Confidence            211000 00000000000    000000000              00000112  22111100            00112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCC
Q 011743          304 EEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGH  383 (478)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~  383 (478)
                      +++++......++.....++..+.+..+.+..+....+...  + .+.+.+...+.+..++..++.+++..++.+|+.+ 
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  368 (524)
T 2xut_A          293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV-  368 (524)
T ss_dssp             TTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC-
Confidence            33444555555666666667777777666665554444321  1 2445566777788888899998876555555422 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhH
Q 011743          384 PAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT  463 (478)
Q Consensus       384 ~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g  463 (478)
                        +.++.+++.+|+++.+++++...+.+...    +.+  ...+.+++++.+++.++++++..|..++++.+.+|+++||
T Consensus       369 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g  440 (524)
T 2xut_A          369 --KLTALRKMGAGIAITGLSWIVVGTIQLMM----DGG--SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG  440 (524)
T ss_dssp             ----CCHHHHHTHHHHHHHHHHTTTTTTTTT----TTT--CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT
T ss_pred             --CCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh
Confidence              14566778888888888877666542110    000  1246777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccC
Q 011743          464 LLLHLHFCHCHLAT  477 (478)
Q Consensus       464 ~~~g~~~~~~~lg~  477 (478)
                      +++|++++..++|+
T Consensus       441 ~~~g~~~~~~~~g~  454 (524)
T 2xut_A          441 TIMSFWTLSVTVGN  454 (524)
T ss_dssp             TTHHHHGGGHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.91  E-value=3.2e-24  Score=220.03  Aligned_cols=363  Identities=8%  Similarity=-0.078  Sum_probs=228.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      ++.++.+++..++..+..+.+.+.++.+ .+++ .+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence            3445555666666666666555666544 5567 999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHH----HhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743           94 LSLVMLTI----QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN  169 (478)
Q Consensus        94 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~  169 (478)
                      ++.+++.+    +.                   +.+.++++|++.|++.+...++..++++|++|+++      |+++++
T Consensus       104 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~  158 (451)
T 1pw4_A          104 AVMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS  158 (451)
T ss_dssp             HHHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred             HHHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence            99998887    54                   66788899999999999999999999999999877      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCC
Q 011743          170 FYLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSL  248 (478)
Q Consensus       170 ~~~~~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (478)
                      +.....++|..++|.+++++.+..| ||+.|++.+++.++..++.++..++.++.+...+. .             .  .
T Consensus       159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~--~  222 (451)
T 1pw4_A          159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------E--Y  222 (451)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------T--T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------h--h
Confidence            9999999999999999999888788 99999998887766555544433321111100000 0             0  0


Q ss_pred             CCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 011743          249 PDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQ  328 (478)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~  328 (478)
                      ....    +++.+      .+  ..+                 +.+++..........+.++..................
T Consensus       223 ~~~~----~~~~~------~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (451)
T 1pw4_A          223 KNDY----PDDYN------EK--AEQ-----------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD  273 (451)
T ss_dssp             CCC------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc----cccch------hh--hhc-----------------ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000    00000      00  000                 0000000000000012222222111111111111222


Q ss_pred             cchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHH-HHHHHH
Q 011743          329 LQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSV-ISMTIA  407 (478)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~-~~~~~~  407 (478)
                      +.+.+..+..+.+      ....+.+.....+..++..++.+++.+++.+         ++++.+.++.++.+ ++++..
T Consensus       274 ~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          274 WSPTYLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHH
Confidence            2222222211111      1122344555566677777777765554300         22233445544443 444433


Q ss_pred             HHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhc-cC
Q 011743          408 GFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHL-AT  477 (478)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~l-g~  477 (478)
                      .+..             ..+.+......++.|++.....+....++.+..|+++||+++|+.+...++ |+
T Consensus       339 ~~~~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~  396 (451)
T 1pw4_A          339 WMNP-------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  396 (451)
T ss_dssp             TSCC-------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHhc-------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence            3220             125566677778888888888888899999999999999999999998877 53

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.91  E-value=1.8e-22  Score=206.32  Aligned_cols=343  Identities=11%  Similarity=0.005  Sum_probs=223.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743           12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL   91 (478)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~   91 (478)
                      ++++.+..+....++..+....+.+.++ ++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHH
Confidence            3445555556666666666554555554 5778899999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+++.+++.....                ..+.+.++++|++.|+|.+...+...++++|.+|+++      |++++++.
T Consensus       101 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~  158 (438)
T 3o7q_A          101 YALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLA  158 (438)
T ss_dssp             HHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHH
T ss_pred             HHHHHHHHHhccc----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHH
Confidence            9999988843221                1278899999999999999999999999999999988      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-ccch-------------------------hHHHHHHHHHHHHHHHHHHHhcCcceeecCC
Q 011743          172 LFATTLAAMIGVTAIVYVF-IDQG-------------------------WWLGFLISSVATLIGLIALAIGKPFYRIQQP  225 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~-~~~~-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~  225 (478)
                      ....++|..++|.+++++. +..+                         |++.|++.++..++..+..++.+.+  +.++
T Consensus       159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p--~~~~  236 (438)
T 3o7q_A          159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP--ALQS  236 (438)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC--cccc
Confidence            9999999999999999887 5444                         9999987776655554444432211  1110


Q ss_pred             CCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHH
Q 011743          226 GESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEE  305 (478)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  305 (478)
                      +.++                  . +.+                   .....++.+                      +-.
T Consensus       237 ~~~~------------------~-~~~-------------------~~~~~~~~~----------------------~~~  256 (438)
T 3o7q_A          237 DNHS------------------D-AKQ-------------------GSFSASLSR----------------------LAR  256 (438)
T ss_dssp             TCCC------------------C-SST-------------------TSHHHHHHH----------------------HTT
T ss_pred             cccc------------------c-ccc-------------------cchhhhHHH----------------------HHh
Confidence            0000                  0 000                   000000000                      000


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhHhhcchhh-hhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCC
Q 011743          306 VKILARM-MPILASTIIMNTCLAQLQTLS-VTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGH  383 (478)
Q Consensus       306 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~  383 (478)
                      .+.++.. +..++....+.... .+.+.+ ..+..+.+      ....+.+.....+..++..++.+++.+++       
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-------  322 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACW-SYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF-------  322 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence            1111111 22222222222222 222223 32222222      11223444455566666676666655543       


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhH
Q 011743          384 PAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT  463 (478)
Q Consensus       384 ~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g  463 (478)
                          ++++.+.++.++.+++++...+.               .+.+ ....+++.+++.....|..+++..+..|++ ++
T Consensus       323 ----~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~  381 (438)
T 3o7q_A          323 ----APHKVLAAYALIAMALCLISAFA---------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK  381 (438)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHC---------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred             ----cchHHHHHHHHHHHHHHHHHHHc---------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence                34455677777777766655543               2222 344557888899999999999999999977 88


Q ss_pred             HHHHHHHHHhhcc
Q 011743          464 LLLHLHFCHCHLA  476 (478)
Q Consensus       464 ~~~g~~~~~~~lg  476 (478)
                      .++++.. ...+|
T Consensus       382 ~~~~~~~-~~~~g  393 (438)
T 3o7q_A          382 YGSSFIV-MTIIG  393 (438)
T ss_dssp             HHHHHHH-HTTHH
T ss_pred             chhhHHH-HHHHH
Confidence            8888776 33343

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=7e-23  Score=205.47  Aligned_cols=167  Identities=11%  Similarity=0.074  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743           18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV   97 (478)
Q Consensus        18 ~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~   97 (478)
                      +.+.+..++..+......+.++.+ .+++|.++.+.+++.+.+.+...++.++.|+++|| +||||++..+.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence            445566667777766666666654 67899999999999999999999999999999999 8999999999999999998


Q ss_pred             HHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHH
Q 011743           98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL  177 (478)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~  177 (478)
                      ++..+.                   +.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.....++
T Consensus        81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  135 (375)
T 2gfp_A           81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV  135 (375)
T ss_dssp             HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred             HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence            888765                   78889999999999999999999999999999888      99999999999999


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011743          178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI  211 (478)
Q Consensus       178 g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~  211 (478)
                      |..++|.+++++.+..+|++.|++.++..++..+
T Consensus       136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999998888999999987776554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.85  E-value=1.8e-20  Score=194.68  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=116.2

Q ss_pred             chhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHH
Q 011743           49 DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY  128 (478)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (478)
                      +..+.+++.+++.++..++++++|+++|| +|||+++.++.+++.++.++++.+........... .-...-..+.+.++
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-~~~~~~a~~~~~l~  130 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-TVPVYLAGYVPEFV  130 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-SCCGGGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-HHHHHHhhhHHHHH
Confidence            34567889999999999999999999999 89999999999999999998875321000000000 00000023788999


Q ss_pred             HHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc--------chhHHHHH
Q 011743          129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--------QGWWLGFL  200 (478)
Q Consensus       129 ~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~--------~~~~~~f~  200 (478)
                      ++|+++|+|.|+..+..+++++|..|+++      |++..++...+..+|..+++.++..+...        .+|+..+.
T Consensus       131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (491)
T 4gc0_A          131 IYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA  204 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence            99999999999999999999999999887      99999999999999999888877655432        35777766


Q ss_pred             HHHHHHHHHH
Q 011743          201 ISSVATLIGL  210 (478)
Q Consensus       201 i~~~~~~~~~  210 (478)
                      +..+..++..
T Consensus       205 ~~~~~~~~~~  214 (491)
T 4gc0_A          205 SECIPALLFL  214 (491)
T ss_dssp             TTHHHHHHHH
T ss_pred             hhhhhhhhhh
Confidence            6555444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.80  E-value=1.1e-20  Score=192.91  Aligned_cols=168  Identities=9%  Similarity=-0.046  Sum_probs=119.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..+.+....++..+++..+.++++.|+++++|++..++|++.+.+.++..+++++.|+++|| +||||++.++..+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence            456666666677777777778999999999999999999999999999999999999999999 8999999999887765


Q ss_pred             HHHHH---HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           95 SLVML---TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        95 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      +...+   ..+..                  ....++.++.+.+++.|...+...+...++.++..    ++++..++..
T Consensus        86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~  143 (417)
T 2cfq_A           86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRA  143 (417)
T ss_dssp             CHHHHHHHTHHHH------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHH
T ss_pred             HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHH
Confidence            33211   11110                  00112344555555555544444444444433211    1256667777


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT  206 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~  206 (478)
                      +...++|..++|.+++++.+ .+|++.|++.++..
T Consensus       144 ~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          144 RMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             SSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            77788999999999998876 68999998766553

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.50  E-value=9.7e-14  Score=141.78  Aligned_cols=178  Identities=12%  Similarity=0.068  Sum_probs=152.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc--chhHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATCLVFGTLE   92 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Gr~~~~~~~~~~~   92 (478)
                      |..+.+++..++..++++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++|| +  |||+.+.++..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            567778888888889999999999999999999999999999999999999999999999999 8  9999988887776


Q ss_pred             H-HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           93 V-LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        93 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      . ++.+++....                 ..+.+.+.+..++.|++.+...+...+++.|.+|+++      |++++++.
T Consensus       331 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~  387 (451)
T 1pw4_A          331 VTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  387 (451)
T ss_dssp             HHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred             HHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence            6 5554443321                 1256667777888899888888888899999999887      99999999


Q ss_pred             HHHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          172 LFATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       172 ~~~~~~-g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ....++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus       388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 999999999999998899999999888877776665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.36  E-value=6.9e-12  Score=127.53  Aligned_cols=169  Identities=14%  Similarity=0.050  Sum_probs=136.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHH-cccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLY-FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      |..+..++..++....++++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+++..+.++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence            456777777788888888888999999 888889999999999999999999999999999999 899999999998888


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.+++....                   +... .+..++.+++.+...|...++..|.+|++       ++.+.++.. 
T Consensus       337 ~~~~~~~~~~-------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-  388 (438)
T 3o7q_A          337 ALCLISAFAG-------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-  388 (438)
T ss_dssp             HHHHHHHHCC-------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred             HHHHHHHHcC-------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence            8877666543                   3333 34457888999999999999989998843       345555544 


Q ss_pred             HHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHH
Q 011743          174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIA  212 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~  212 (478)
                      ...+|..++|.+.|++.+..| ++..|++.+++.++..+.
T Consensus       389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            556999999999999999888 999998776655544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.34  E-value=2.1e-12  Score=131.37  Aligned_cols=176  Identities=10%  Similarity=-0.046  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCC---chhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHF---DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      .+...+..++....++....+++.|+.+.++.   +..+.+....+..+...++.++.|+++|| +|||+++..+.++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence            44444443444445554555678888766653   34455777777778888899999999999 899999998888877


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH-H
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY-L  172 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~-~  172 (478)
                      ++.+++....                   +.+.+++...+.+++.+...+...+++.|.+|++.      |++++++. .
T Consensus       301 ~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~  355 (417)
T 2cfq_A          301 VRIIGSSFAT-------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFC  355 (417)
T ss_dssp             HHHHHHTTCC-------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHT
T ss_pred             HHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHH
Confidence            7655554322                   44555666666777777666777889999999766      88888884 5


Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      ...++|..++|.++|++.+..|++..|.+.+++.+++.++.+...+
T Consensus       356 ~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             TTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            6778999999999999988889999999888877777666554433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.22  E-value=3.1e-11  Score=124.92  Aligned_cols=184  Identities=9%  Similarity=-0.027  Sum_probs=140.2

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHH-----HHHHH
Q 011743           17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-----VFGTL   91 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~~~   91 (478)
                      .+.+.+...+....+.....+++.|..+.++.+..+.+.+.....+...++.++.|+++|| +|||+...     .+.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence            4445555666666677777888999999899888888999999999999999999999999 89987655     67777


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+++.+++.......       +.   ....+.+.+++..++.+++.+...|...+++.|.+|+++      |+++.++.
T Consensus       364 ~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  427 (491)
T 4aps_A          364 AGLSFLLMAIPGALY-------GT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW  427 (491)
T ss_dssp             HHHHHTTTHHHHHHC-------CC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred             HHHHHHHHHHHHHhc-------CC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence            777766655532100       00   001255667788889999999999999999999999998      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      +...++|..++|.+.+++.+ .++...|.+.+++.+++.+..++..+
T Consensus       428 ~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          428 FLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998875 47777888777777666666655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.03  E-value=3.2e-09  Score=109.59  Aligned_cols=177  Identities=10%  Similarity=-0.073  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743           20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML   99 (478)
Q Consensus        20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~   99 (478)
                      ......+..+..+....+...++.+..+.+............+...++.++++++.|| +|||+.++.+.....++.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHH
Confidence            3333334434333333344445566788888888888888889999999999999999 899999999998888877666


Q ss_pred             HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhcc-ccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 011743          100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGC-GGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA  178 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~-g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  178 (478)
                      ......               .......++...+...+. ....|....+.+|.+|.+.      |+++.++.....++|
T Consensus       360 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~  418 (491)
T 4gc0_A          360 GTAFYT---------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLA  418 (491)
T ss_dssp             HHHHHT---------------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHH
T ss_pred             HHHHhc---------------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHH
Confidence            544310               001112222222222222 2234566788999999998      999999999999999


Q ss_pred             HHHHHHHHHhhhc------cchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743          179 AMIGVTAIVYVFI------DQGWWLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       179 ~~~~p~i~~~l~~------~~~~~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                      +.+++.+.+.+.+      ..++...|++.+++.+++.+..++..|
T Consensus       419 ~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P  464 (491)
T 4gc0_A          419 NYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  464 (491)
T ss_dssp             HHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence            9988887766543      234556777777777777766655544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.88  E-value=3.7e-10  Score=112.43  Aligned_cols=162  Identities=9%  Similarity=-0.070  Sum_probs=128.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH-HH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL-EV   93 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~   93 (478)
                      |..+...+..++....++++..+++.|+++++|.++.+++.+.....++..++.++.|+++|| +|++  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence            456677777788888888888999999998899999999999999999999999999999999 7873  2333333 23


Q ss_pred             HHHHH--HHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743           94 LSLVM--LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY  171 (478)
Q Consensus        94 i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~  171 (478)
                      .+..+  .....                 ..+.+.+++..++.+++.+...+...+++.|.+| ++      |++++++.
T Consensus       276 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~  331 (375)
T 2gfp_A          276 AGLLMWIPDWFG-----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALV  331 (375)
T ss_dssp             TSSSSSHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHH
T ss_pred             HHHHHHHHhhhc-----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHH
Confidence            33221  11111                 1255666778888999999999999999999987 55      89999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 011743          172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISS  203 (478)
Q Consensus       172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~  203 (478)
                      ....++|..++|.+.+.+.+..+|...+++.+
T Consensus       332 ~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          332 GGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999999999999999887777888777643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.19  E-value=4.7e-07  Score=94.13  Aligned_cols=150  Identities=11%  Similarity=-0.001  Sum_probs=96.3

Q ss_pred             hHhHHHHHHHHHHHHHhhHHHHHh----hhccch----hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchh
Q 011743           52 GASNTLTNFFGSTFLLCLVGGFIS----DTYLSR----FATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI  123 (478)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (478)
                      ..+.+.....+...+..++.+++.    || .|+    ++.+.++.++.+++.+++.....   ..    +.+   ...+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~----~~~---~~~~  404 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQL---MM----DGG---SALS  404 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTT---TT----TTT---CCCC
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHH---Hh----cCC---CCcC
Confidence            345555555555666666666654    44 343    34566677777776665544310   00    000   0125


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc--hh------
Q 011743          124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ--GW------  195 (478)
Q Consensus       124 ~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~--~~------  195 (478)
                      .+.+++..++.|++.+...+...+++.|.+|+++      |++++++.+...++|..++|.+.+.+.+..  +|      
T Consensus       405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~  478 (524)
T 2xut_A          405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM  478 (524)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            5667778889999999999999999999999988      999999999999999999999999887632  23      


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhcCc
Q 011743          196 ---WLGFLISSVATLIGLIALAIGKP  218 (478)
Q Consensus       196 ---~~~f~i~~~~~~~~~~~~~~~~~  218 (478)
                         +..|++.+++.+++.++.++..+
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          479 SVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHH
Confidence               33366666666666655554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.85
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.31
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.3

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.8e-24  Score=213.69  Aligned_cols=178  Identities=10%  Similarity=0.026  Sum_probs=143.1

Q ss_pred             hHHHHHHHHHHHHHHHH---hHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           17 CTFVFVLSALENMGFIA---NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        17 ~~~l~~~~~~~~~~~~~---v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      -|.++...++..+.+|.   ....+.++++ ++|++..+.|++.+++.++..++.+++|+++|| +|||+++.++.++.+
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHH
Confidence            34444444444444432   3445556776 589999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      ++.++++.+...               ..+...+++.|++.|++.|...++..++++|++|+++      |++++++...
T Consensus       101 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~  159 (447)
T d1pw4a_         101 AVMLFMGFVPWA---------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNC  159 (447)
T ss_dssp             HHHHHHHHCHHH---------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHH
T ss_pred             HHHhhccccchh---------------hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------cccccccccc
Confidence            998887765311               1256788999999999999999999999999999887      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHhcC
Q 011743          174 ATTLAAMIGVTAIVYVFID-QGWWLGFLISSVATLIGLIALAIGK  217 (478)
Q Consensus       174 ~~~~g~~~~p~i~~~l~~~-~~~~~~f~i~~~~~~~~~~~~~~~~  217 (478)
                      +.++|..++|.+++.+... .+|++.|++.++..++..++.+...
T Consensus       160 ~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         160 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence            9999999999988876654 4799999888777665555554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=7.5e-21  Score=187.64  Aligned_cols=181  Identities=10%  Similarity=-0.027  Sum_probs=125.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743           15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL   94 (478)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i   94 (478)
                      |..|.+.+..++..+++....++++.|+++++|+|+.+.|++.+++.++..++.++.|+++|| +||||+++++.....+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            568888888888888888888999999999999999999999999999999999999999999 8999999999998888


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHH
Q 011743           95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA  174 (478)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~  174 (478)
                      +..++......               .......++.+.+.+.+.+...+.......+..++    +..++....+.....
T Consensus        86 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  146 (417)
T d1pv7a_          86 MFAPFFIFIFG---------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK----VSRRSNFEFGRARMF  146 (417)
T ss_dssp             THHHHHHHTHH---------------HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH----HHHHHSCCHHHHHHH
T ss_pred             HHHHHHHhhhh---------------hhHHHHHHHHHHHhhhcccccccchhhcccccccc----hhhhhHHHHHHHhhh
Confidence            87777665310               00112223333444444343333333333222221    112245566677777


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743          175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       175 ~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ...+..++|.+++.+.+ .+|+..+........+..+...+.
T Consensus       147 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~  187 (417)
T d1pv7a_         147 GCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFA  187 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             hcccccccccccccccc-ccccccccchhhHHHHHHHHHHHH
Confidence            88889999999988876 455555555555444444444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=7.7e-12  Score=124.49  Aligned_cols=181  Identities=12%  Similarity=0.026  Sum_probs=142.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743           14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV   93 (478)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~   93 (478)
                      .|.++.+....++.....++...+++.|+.+.+|++..+.+.......+...++.+++|+++|| ++|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHH
Confidence            3557777888888888889999999999999999999999999999999999999999999999 888765555444433


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743           94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF  173 (478)
Q Consensus        94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~  173 (478)
                      +...........+              ..+....++..++.|++.++..+....+..|.+|++.      |+++.++.+.
T Consensus       327 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~  386 (447)
T d1pw4a_         327 LVTIATIVYWMNP--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGL  386 (447)
T ss_dssp             HHHHHHHHTTSCC--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence            3332222211000              2256666777788888888888888999999999877      8999999988


Q ss_pred             HHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 011743          174 ATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI  215 (478)
Q Consensus       174 ~~~~-g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~  215 (478)
                      ..++ |..++|.+.|++.+..||+..|++.+++.+++.++...
T Consensus       387 ~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            8877 56778999999999999999998877776666554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.9e-12  Score=126.24  Aligned_cols=155  Identities=11%  Similarity=-0.042  Sum_probs=128.8

Q ss_pred             HHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 011743           36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK  115 (478)
Q Consensus        36 ~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  115 (478)
                      .....+..++.+.+....+.......++..++.++.|++.|| +|||+.+.++.++.+++.+++....            
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~------------  310 (417)
T d1pv7a_         244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT------------  310 (417)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred             cccccccccccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc------------
Confidence            333344445556677778888888999999999999999999 8999999999999888877776543            


Q ss_pred             CccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhhccch
Q 011743          116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-FATTLAAMIGVTAIVYVFIDQG  194 (478)
Q Consensus       116 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~i~~~l~~~~~  194 (478)
                             +.+.+++..++.|++.+...+...+++.|.+|++.      |++.++..+ ....+|..++|.+.|++.+..|
T Consensus       311 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g  377 (417)
T d1pv7a_         311 -------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             -------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence                   66777888889999999999999999999999887      899999865 4567999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhc
Q 011743          195 WWLGFLISSVATLIGLIALAIG  216 (478)
Q Consensus       195 ~~~~f~i~~~~~~~~~~~~~~~  216 (478)
                      ++..|++.+++.++..++..+.
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         378 FQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998887776666555544