Citrus Sinensis ID: 011747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVDPTKQ
Secondary Structure (PSIPRED)
cEEEEEHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccccEEHccEEEEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLTVTLTawlpqlhppkcdvakppfgqcksansmQLGVLVMGLGllsigtggirpcsipfgvdqfdattdegvKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYvlvepegsifsGIGQVLVAAYKKRrltlpqgqmdhhgifydpppklfvlsklplthqfRFLNKAAmivdnnelkpdgtpvnqwrlcSIQQVEEVKCLIKIIPIWAAGIISLtsisqqgtFTVSQAMKMnrhlgpkfqippgtvGVISMITIGlwlpfydtVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERgrrasahlhpmsqvsvfwlaPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHgvtarhghpdwltndidagrlDYFYFLIAGLGGLNIVYFLYCARRYRyksgiqsledqndlelvdptkq
Flexible Loop (DISEMBL)
MLTVTLTawlpqlhppKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKsgiqsledqndlelvdptkq
Low Complexity Region (SEG)
MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQlgvlvmglgllsigtggiRPCSIPFGVDQFDATTDEGVKGINSFFNWYYttftvvilitqtvlvYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLikiipiwaagiiSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVDPTKQ
Disordered region (IsUnstruct)
***VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI*****************
Disordered Region (DISOPRED)
MLTVTLTAWLPQLHPPK**************NSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT*E**KGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMD******************PLTHQFRFLNKAAMI****************RLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY***********************
Disordered Region (DISEMBL)
MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVDPTKQ
Disordered Region (DISPRO)
MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPP**FVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVDPTKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	478	2.2.26 [Sep-21-2011]
Q8RX77	620	Nitrate transporter 1.7 O	yes	no	0.991	0.764	0.607	1e-173
Q9LFX9	576	Nitrate transporter 1.6 O	no	no	0.981	0.814	0.579	1e-156
Q9CAR9	555	Putative peptide/nitrate	no	no	0.933	0.803	0.513	1e-121
Q9LV10	616	Probable peptide/nitrate	no	no	0.941	0.730	0.461	1e-115
Q9M9V7	587	Probable peptide/nitrate	no	no	0.962	0.783	0.447	1e-115
Q944G5	636	Probable peptide/nitrate	no	no	0.939	0.705	0.454	1e-109
Q3E8X3	559	Probable peptide/nitrate	no	no	0.922	0.788	0.408	2e-97
Q9M390	570	Peptide transporter PTR1	no	no	0.937	0.785	0.389	2e-95
Q9M817	607	Probable peptide transpor	no	no	0.937	0.738	0.387	5e-94
Q9SX20	596	Probable nitrite transpor	no	no	0.943	0.756	0.411	4e-92

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  607 bits (1565), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/484 (60%), Positives = 376/484 (77%), Gaps = 10/484 (2%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           ++T+TLTA  PQLHP  C+   P    C   N +Q+GVL++GL  LS+G+GGIRPCSIPF
Sbjct: 137 LITITLTASFPQLHPASCNSQDPL--SCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPF 194

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD  T+EGVKG+ SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM  
Sbjct: 195 GVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMAL 254

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
           A+++F  G K YV V+PEGSIFSGI QV+VAA KKR+L LP  + D    +YDP  K  V
Sbjct: 255 AVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSV 313

Query: 181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 240
           LSKL  ++QFR L+KAA++++  +L P+G P ++WRLCS+Q+VEEVKCLI+I+PIW+AGI
Sbjct: 314 LSKLHRSNQFRCLDKAAVVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGI 372

Query: 241 ISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
           ISL +++ QGTFTVSQA+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+
Sbjct: 373 ISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRR 432

Query: 301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQL 356
           IT H+ GITLLQRIG G++F+I SMIVAG+VER RR     +     M+ +SVFWL+PQL
Sbjct: 433 ITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQL 492

Query: 357 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHG 416
           ILMG CEAFNIIGQIEFFN QFP+HM+SIANSL   SF  +SYLSS L+T+VH  +  H 
Sbjct: 493 ILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHD 552

Query: 417 HPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVD 474
            PDWL  +++AG+LDYFY+LIA LG +N+VYF YCAR YRYK G  I+  E+    + V+
Sbjct: 553 RPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVE 612

Query: 475 PTKQ 478
            T +
Sbjct: 613 MTSK 616

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2

 Score =  550 bits (1417), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/480 (57%), Positives = 362/480 (75%), Gaps = 11/480 (2%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           ++TVTLTA LPQLHPP C+   P   +C   N +QLG+L +GLG LSIG+GGIRPCSIPF
Sbjct: 100 LMTVTLTACLPQLHPPPCNNPHP--DECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPF 157

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD  T++G+KG+ SFFNWYY T T+V++ + TV+VY+Q +VSWVIGF IPT LM  
Sbjct: 158 GVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLMAC 216

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
           A++LF VG + YV V+PEGS+FSGI +V+VAA KKR L +     D    +Y+PP K  V
Sbjct: 217 AVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVD-DGTEEYYEPPVKPGV 275

Query: 181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 240
           LSKLPLT QF+FL+KAA+I+D  +L  +G P N+WRLCSIQ+VEEVKCLI+++P+W+AGI
Sbjct: 276 LSKLPLTDQFKFLDKAAVILDG-DLTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGI 334

Query: 241 ISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
           IS+ +++ Q TF V QA KM+RH+GP F+IP  ++ VIS ITIG+W+P Y+ +LVP L +
Sbjct: 335 ISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASITVISYITIGIWVPIYEHLLVPFLWR 394

Query: 301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMG 360
           + K    +TLLQR+GIG++F+ILSM  AG VE  RR  A    M+Q+SVFWLA  LILMG
Sbjct: 395 MRKFR--VTLLQRMGIGIVFAILSMFTAGFVEGVRRTRAT--EMTQMSVFWLALPLILMG 450

Query: 361 FCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDW 420
            CE+FN IG IEFFN QFP+HM+SIANSL   SF  A+YLSSLL+T VH V+    HPDW
Sbjct: 451 LCESFNFIGLIEFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDW 510

Query: 421 LTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 478
           L  D+D G+LDYFY+LIA LG +N+VYF YCA RY+YK+G  I+   ++  L  ++P ++
Sbjct: 511 LNKDLDRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQYKAGSQIEDFNEEKSLLDIEPNQR 570

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1

 Score =  437 bits (1124), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/460 (51%), Positives = 329/460 (71%), Gaps = 14/460 (3%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           ML +T T+ +P L PP C  A    GQC   +  QL VL+ GL LLS+GTGGIR CS+PF
Sbjct: 104 MLVLTFTSLVPNLRPPPC-TADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPF 162

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
            +DQFD +T+EG +G  SFF+WYYTT T+V L++ T+++Y+Q+++SW IGF IPTVL   
Sbjct: 163 SLDQFDDSTEEGREGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFF 222

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
           A++L  VG + YV V+PEGS+FSG+ +VLVAAYKKR+     G +D+H    +   +   
Sbjct: 223 ALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKKRKARFTSG-IDYHQPLLETDLQ--- 278

Query: 181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 240
            +KL LT QFRFLNKA ++++N+E   +     +WR C+++Q+E++K +I IIPI+A+ I
Sbjct: 279 SNKLVLTDQFRFLNKAVIVMNNDEAGNE-----EWRTCTVRQIEDIKSIISIIPIFASSI 333

Query: 241 ISLTSISQQGTFTVSQAMKMNRHL-GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
           I   +++QQ TFTVSQA+KM+    G  + IPP ++ VIS++ IG+WLPFY+TVLV  + 
Sbjct: 334 IGFLAMNQQQTFTVSQALKMDLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIE 393

Query: 300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILM 359
            ITK  GGI+LLQ++GIG IFSI +M+++G+VER RR    L+ + ++SVFWL PQ +LM
Sbjct: 394 NITKQNGGISLLQKVGIGNIFSISTMLISGIVERKRR-DLSLNGV-KMSVFWLTPQQVLM 451

Query: 360 GFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPD 419
           GF + F I+G  EFFNKQ P +M+SI NSLL+     ASYLSS +++IVH VTAR G   
Sbjct: 452 GFYQVFTIVGLTEFFNKQVPINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQ-S 510

Query: 420 WLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKS 459
           WLT+DID  +LD FY+ IA L  LN ++F +CARRYRY++
Sbjct: 511 WLTDDIDKSKLDCFYYFIAALSTLNFIFFFWCARRYRYRN 550

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/466 (46%), Positives = 293/466 (62%), Gaps = 16/466 (3%)

Query: 4   VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 63
           + LTA +PQLHP  C  A      C   +  Q+  L+MGLG L +G GGIRPC++ FG D
Sbjct: 132 ILLTAAVPQLHPAACGTAADSI--CNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGAD 189

Query: 64  QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 123
           QF+  ++ G +GI+SFFNWY+ TFT   +++ T++VY+Q +VSW IG  IP VLM  A +
Sbjct: 190 QFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACL 249

Query: 124 LFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSK 183
           +F  G KLYV ++  GS  +GI QV+  A KKR L  P  Q   +   Y PP   +  SK
Sbjct: 250 IFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLK-PAKQPWLNLYNYYPPK--YANSK 306

Query: 184 LPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISL 243
           L  T QFRFL+KAA++   ++L+PDG P + W+LC++QQVEEVKC+++++PIW A  I  
Sbjct: 307 LKYTDQFRFLDKAAILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYY 366

Query: 244 TSISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 302
            +I+QQ T+ V QA++ +R LG   F IP  T  V  M  + +++  YD VLVP +R+IT
Sbjct: 367 LTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRIT 426

Query: 303 KHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----------MSQVSVFWL 352
             + GITLLQRIG G+ F+  S++VAG VE  RR  A   P          +S +S  WL
Sbjct: 427 GLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWL 486

Query: 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 412
            PQL L G  EAF  IGQ+EF+ KQFP++M+S A S+ +   G +SYL S LI  VH  T
Sbjct: 487 IPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTT 546

Query: 413 ARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458
                 +WL  D++ GRLD FYF+IAG+  +N  YFL  +R YRYK
Sbjct: 547 QNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWYRYK 592

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/478 (44%), Positives = 301/478 (62%), Gaps = 18/478 (3%)

Query: 2   LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 61
           + + LTA +  LHP +C  AK     C   +  Q+  L   + LL IG GGIRPC++PFG
Sbjct: 106 VAMDLTAVIHPLHPAQC--AKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFG 163

Query: 62  VDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 121
            DQFD  T EG +GI SFFNWY+ TFT   +++ T++VY+Q +VSW IG  IP +LM+  
Sbjct: 164 ADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLG 223

Query: 122 IILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVL 181
            I+F  G KLYV V+  GS    I +V+V A KKRRL  P G  +     Y+     F  
Sbjct: 224 CIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-PVGPNE----LYNYIASDFKN 278

Query: 182 SKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGII 241
           SKL  T QFRFL+K+A+   +++L  DG+PV+ W+LCS+QQVEEVKC+I+++P+W +  +
Sbjct: 279 SKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAAL 338

Query: 242 SLTSISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
              +  QQ T+T+ Q+++ +R LGP  FQIP G+  V  M+ + +++P YD VLVP LRK
Sbjct: 339 FYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRK 398

Query: 301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----------MSQVSVF 350
            T  +GGIT LQR+G G+   I SM+V+ +VE+ RR  A   P          +S +S  
Sbjct: 399 YTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGM 458

Query: 351 WLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410
           WL PQL+LMG  +A   +GQ+EF+ KQFP++M+S A SL +C  G ASYLS+ L++ VH 
Sbjct: 459 WLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHD 518

Query: 411 VTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQN 468
            T       WL  D++ GRL+YFYFL+AG+  LN+ YFL  +  YRYK  +   +D +
Sbjct: 519 TTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYKDVVAKDKDMD 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/469 (45%), Positives = 295/469 (62%), Gaps = 20/469 (4%)

Query: 4   VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 63
           + LTA +P LHP  C         C+  +  Q+  L+MGLG L +G GGIRPC++ FG D
Sbjct: 150 ILLTAAIPSLHPVACGNKI----SCEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGAD 205

Query: 64  QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 123
           QF+  ++ G KGINSFFNWY+ TFT   +I+ T +VYIQ +VSW IG  IP  LM  A +
Sbjct: 206 QFNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACV 265

Query: 124 LFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLT-LPQGQMDHHGIFYDPPPKLFVLS 182
           +F  G +LYV V+  GS  +GI +V+ AA KKR L  + Q  ++     Y+  P  +  +
Sbjct: 266 IFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLKPVKQPWVN----LYNHIPSNYANT 321

Query: 183 KLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIIS 242
            L  T QFRFL+KAA++    +L  DGT  + W+LC++QQVEEVKC++++IPIW A  I 
Sbjct: 322 TLKYTDQFRFLDKAAIMTPEEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIY 381

Query: 243 LTSISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKI 301
             +I+ Q T+ V QA++ +R LG   F+IP  T  V  M  + +++ FYD VLVP+LR++
Sbjct: 382 YLAITIQMTYPVFQALQSDRRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRV 441

Query: 302 TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----------MSQVSVFW 351
           T  E GI+LLQRIG G  F+I+S++V+G +E  RR  A   P          +S +S  W
Sbjct: 442 TGLETGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALW 501

Query: 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGV 411
           L PQL L G  EAF  IGQ+EF+ KQFP++MKS A S+ +   G +SYL+S LI+ VH  
Sbjct: 502 LIPQLTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRT 561

Query: 412 TARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG 460
           TA     +WL  D++  +LDYFYF++ GL  +N+ YFL  AR YRYK G
Sbjct: 562 TAHSPSGNWLAEDLNKAKLDYFYFMLTGLMVVNMAYFLLMARWYRYKGG 610

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2

 Score =  356 bits (914), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/455 (40%), Positives = 277/455 (60%), Gaps = 14/455 (3%)

Query: 5   TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 64
            LTA LP L P  C     P          QLGVL  GLGLL+IG GG+RPC+I FG DQ
Sbjct: 107 ALTAALPSLRPDACI---DPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQ 163

Query: 65  FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 124
           FD +T +G   + +FFNW+Y +FTV ++I  T +VYIQ ++SWVIGF IPT  +  +I  
Sbjct: 164 FDTSTKKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITT 223

Query: 125 FLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKL 184
           F++G+  Y+  + EGS+F+ I +V+ AA KKR++        + G   D  P   V  K 
Sbjct: 224 FVIGQHTYICAKAEGSVFADIVKVVTAACKKRKVKPGSDITFYIGPSNDGSPTTLVRDK- 282

Query: 185 PLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLT 244
              H+ RF +KA+++ + NEL  DG    +WRLCS+QQV+ +KC+  I+P+W  GI    
Sbjct: 283 ---HRLRFFDKASIVTNPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFI 339

Query: 245 SISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITK 303
              QQ  + + QAM+M++  GP  FQ+P G + ++SMIT+ +W+  Y+ V++P +++IT 
Sbjct: 340 LTDQQNIYGILQAMQMDKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITG 399

Query: 304 HEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP--MSQVSVFWLAPQLILMGF 361
            +  +TL  RI I M   I+ MIVAG  E+ RRASA  +   +S VS+  L PQ  L G 
Sbjct: 400 RKKRLTLKHRIEIVM--GIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGL 457

Query: 362 CEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWL 421
            EAF+ +  +EF   + P+HM+++A ++ F S   ASY+ +LLI ++  VT + G   WL
Sbjct: 458 TEAFSAVALMEFLTVRMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGK-SWL 516

Query: 422 TN-DIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 455
            + D++  RL+ ++F+IAG+   N++YF   A RY
Sbjct: 517 GDKDLNKNRLENYFFIIAGIQVANLLYFRLFASRY 551

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  350 bits (898), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/470 (38%), Positives = 279/470 (59%), Gaps = 22/470 (4%)

Query: 1   MLTVTLTAWLPQLHPPKC--DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 58
           M  +TL+A +P L P  C  D   P        NS Q  V  + L ++++GTGGI+PC  
Sbjct: 110 MTLLTLSASVPGLKPGNCNADTCHP--------NSSQTAVFFVALYMIALGTGGIKPCVS 161

Query: 59  PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLM 118
            FG DQFD   +      +SFFNW+Y +  V  LI  TVLV+IQ +V W  GFG+PTV M
Sbjct: 162 SFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAM 221

Query: 119 IGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFY--DPPP 176
           + A+  F  G + Y L  P GS  + I QV+VAA++K  + +P+   D   +F   D   
Sbjct: 222 VIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPE---DKSLLFETADDES 278

Query: 177 KLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIW 236
            +    KL  T   +F +KAA+   ++ +K DG  VN WRLCS+ QVEE+K +I ++P+W
Sbjct: 279 NIKGSRKLVHTDNLKFFDKAAVESQSDSIK-DG-EVNPWRLCSVTQVEELKSIITLLPVW 336

Query: 237 AAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVP 296
           A GI+  T  SQ  T  V Q   M++H+G  F+IP  ++ +   +++  W P YD  ++P
Sbjct: 337 ATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIP 396

Query: 297 ALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR-----RASAHLHPMSQVSVFW 351
             RK T++E G T LQR+GIG++ SI +MI AG++E  R       +A+      +S+FW
Sbjct: 397 LARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFW 456

Query: 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGV 411
             PQ +L+G  E F  IGQ+EFF  Q PD M+S+ ++L   +    +YLS++L+T+V  +
Sbjct: 457 QIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKI 516

Query: 412 TARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI 461
           T ++G P W+ ++++ G LDYF++L+A L  LN + +L+ ++RY+YK  +
Sbjct: 517 TKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAV 566

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  345 bits (884), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 181/467 (38%), Positives = 278/467 (59%), Gaps = 19/467 (4%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           M+ + LTA LPQ+ P  CD        C S+ + QL +L     L+SIG+GGIRPCS+ F
Sbjct: 107 MVLLWLTAMLPQVKPSPCDPTAAG-SHCGSSTASQLALLYSAFALISIGSGGIRPCSLAF 165

Query: 61  GVDQFDATTD-EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMI 119
           G DQ D   + +  + + SFF WYY +  V +LI  T +VYIQ+ + W IGFG+P VLM+
Sbjct: 166 GADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLML 225

Query: 120 GAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLF 179
            A +LF++   LYV      S+F+G+ Q +VAAYKKR+L+LP    DHH  F        
Sbjct: 226 IAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLP----DHHDSFDCYYHMKD 281

Query: 180 VLSKLPLTHQFRFLNKAAMIVD-NNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAA 238
              K P + + RFLNKA +I +   E+  DG  +N WRLC+  +VEE+K LIK+IPIW+ 
Sbjct: 282 SEIKAP-SQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWST 340

Query: 239 GIISLTSISQQGTFTVSQAMKMNRHL---GPKFQIPPGTVGVISMITIGLWLPFYDTVLV 295
           GI+ ++  + Q +F + QA  M+R L   G  FQ+P G+ G+ ++I + LW+  YD  ++
Sbjct: 341 GIM-MSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVI 399

Query: 296 PALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASA-------HLHPMSQVS 348
           P   KI      +++  R+G+G+  S L+M ++ +VE  RR  A       + + +  +S
Sbjct: 400 PLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDIS 459

Query: 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408
             WL PQ +L G  EA   IGQ EFF  +FP  M SIA SL       AS L+S+++  V
Sbjct: 460 AMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAV 519

Query: 409 HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 455
           + +T+R+G   W++++I+ G  +Y+Y+++A +  +N++Y++ C+  Y
Sbjct: 520 NELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSY 566

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 192/467 (41%), Positives = 284/467 (60%), Gaps = 16/467 (3%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           M  +T++A +P L PP C   +     C  A++ QL +L + L L ++G+GGIRPC + F
Sbjct: 109 MTLLTISAIIPTLRPPPCKGEE----VCVVADTAQLSILYVALLLGALGSGGIRPCVVAF 164

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           G DQFD +         ++FNWYY      +L+  TVLV+IQD+V W +G GIPTV M  
Sbjct: 165 GADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFL 224

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTL-PQGQMDHHGIFYDPPPKLF 179
           ++I F+ G +LY  + P GS F+ + QV VAA++KR+L +     + +     D P  L 
Sbjct: 225 SVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLG 284

Query: 180 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 239
              KL  T    FL+KAA++ + + LKP   P N WRL ++ +VEE+K +I++ PI A+G
Sbjct: 285 --GKLTHTKHMSFLDKAAIVTEEDNLKPGQIP-NHWRLSTVHRVEELKSVIRMGPIGASG 341

Query: 240 IISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
           I+ +T+ +QQGTF++ QA  MNRHL   FQIP G++ V + + +   + FYD V V   R
Sbjct: 342 ILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVAR 401

Query: 300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASA-------HLHPMSQVSVFWL 352
           K T  E GIT L R+GIG + SI++ +VAG VE  R++ A         H +  +S  WL
Sbjct: 402 KFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWL 461

Query: 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 412
            PQ  L G  EAF  IG +EFF  Q P+ M+S A +L + +    +Y+S+LL+T+VH  +
Sbjct: 462 IPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFS 521

Query: 413 ARHGHPDWL-TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458
           A+    +WL  N+++ GRL+YFY+LI  L  +N+VY+L+CA+ Y YK
Sbjct: 522 AKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
255558256	621	nitrate transporter, putative [Ricinus c	0.985	0.758	0.690	0.0
356567570	622	PREDICTED: nitrate transporter 1.7-like	0.985	0.757	0.681	0.0
225424885	619	PREDICTED: nitrate transporter 1.7 [Viti	0.983	0.759	0.651	0.0
356498154	620	PREDICTED: nitrate transporter 1.7-like	0.995	0.767	0.660	0.0
224102695	552	predicted protein [Populus trichocarpa]	0.953	0.826	0.698	0.0
356501934	629	PREDICTED: nitrate transporter 1.7-like	0.987	0.750	0.651	0.0
357486541	608	Peptide transporter PTR1 [Medicago trunc	0.983	0.773	0.662	0.0
297790444	619	proton-dependent oligopeptide transport	0.972	0.751	0.617	1e-171
18409391	620	nitrate transporter 1.7 [Arabidopsis tha	0.991	0.764	0.607	1e-171
12325237	644	putative peptide transporter; 37139-3325	0.991	0.736	0.607	1e-171

>gi|255558256|ref|XP_002520155.1| nitrate transporter, putative [Ricinus communis] gi|223540647|gb|EEF42210.1| nitrate transporter, putative [Ricinus communis]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/475 (69%), Positives = 389/475 (81%), Gaps = 4/475 (0%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPF--GQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 58
           M+TVTLTAWLP LHP KC           C+SA  +QL VL+MGLG LSIGTGGIRPCSI
Sbjct: 139 MVTVTLTAWLPNLHPQKCHQQSQQQYADNCESATPLQLAVLLMGLGFLSIGTGGIRPCSI 198

Query: 59  PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLM 118
           PFGVDQFD TT+EG+KGINSF+NWYYTTFT+VILIT TV+VYIQDS+SWVIGF IPTVLM
Sbjct: 199 PFGVDQFDPTTEEGMKGINSFYNWYYTTFTLVILITLTVVVYIQDSISWVIGFSIPTVLM 258

Query: 119 IGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKL 178
           + +I+LF +G K+Y+ V+PEGSIFSG+ QV VAAYKKRRL LP       GIFYDP  K 
Sbjct: 259 LCSILLFFIGTKIYIHVKPEGSIFSGLAQVFVAAYKKRRLKLPDHGEVVDGIFYDPTVKE 318

Query: 179 FVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAA 238
            VLSKLPLT+QFRFLNKAAMI + N++ PDG+  N+WRLCSIQQ+EEVKCL KI PIWA+
Sbjct: 319 AVLSKLPLTNQFRFLNKAAMI-EKNDINPDGSCANEWRLCSIQQIEEVKCLFKIGPIWAS 377

Query: 239 GIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPAL 298
           GI+S T+I QQGTFTVSQAMKM+RHLG KFQIP G++ V SMITI +WLPFYD + VPAL
Sbjct: 378 GIVSFTAILQQGTFTVSQAMKMDRHLGHKFQIPAGSISVFSMITIAIWLPFYDRIAVPAL 437

Query: 299 RKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLIL 358
           RKITKHEGGITLLQRIGIG++FS+LSMIVAGLVER RRA+A  +P + +SV WL PQL++
Sbjct: 438 RKITKHEGGITLLQRIGIGIVFSVLSMIVAGLVERDRRAAAISNPGTPMSVMWLVPQLVI 497

Query: 359 MGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHP 418
           MG CEAFNIIG IEF+NK+FP HM+S+ANSL FCSF  ASYLS+L+I+IVH VT    HP
Sbjct: 498 MGLCEAFNIIGHIEFYNKEFPGHMRSMANSLFFCSFAGASYLSTLVISIVHKVTRTRDHP 557

Query: 419 DWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQ-NDLEL 472
           DWLT D++AG+LD +YF++AG+G L   YFLYCAR Y+YK+ +Q   +   D+EL
Sbjct: 558 DWLTKDLNAGKLDRYYFVLAGMGILTFFYFLYCARLYQYKTPVQIDNNSYRDVEL 612

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567570|ref|XP_003551991.1| PREDICTED: nitrate transporter 1.7-like [Glycine max]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/477 (68%), Positives = 393/477 (82%), Gaps = 6/477 (1%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           ++ V+LT+WLP+LHPP C   +    QC  A+S Q+GVL+MGL  L+IG+ G+RPCSIPF
Sbjct: 142 LIVVSLTSWLPELHPPSCTPQQLASRQCVRASSSQIGVLLMGLCFLTIGSAGVRPCSIPF 201

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD TTDEG KGINS+FNWYYTTFT+V+L+TQTV+VYIQDSVSW IGFGIPTV M+ 
Sbjct: 202 GVDQFDPTTDEGRKGINSYFNWYYTTFTMVLLVTQTVVVYIQDSVSWRIGFGIPTVCMLC 261

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLF 179
           +II+F VG ++YV V+PEGSIFSGI QVLV AYKKR+L LP  +    G+FYDPP   + 
Sbjct: 262 SIIMFFVGTRVYVHVKPEGSIFSGIAQVLVTAYKKRKLNLPMSEEKPDGVFYDPPLIGIT 321

Query: 180 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 239
           V+SKLPLT +FR LNKAA+I++  EL PDGT VNQWRL SIQQVEEVKCL +IIPIWAAG
Sbjct: 322 VVSKLPLTKEFRALNKAALIME-GELNPDGTRVNQWRLVSIQQVEEVKCLARIIPIWAAG 380

Query: 240 IISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
           I+SL S++QQGTFTVSQAMKMNRHLG KFQIP G+V VIS+ITI LWLPFYD +LVP LR
Sbjct: 381 ILSLISMTQQGTFTVSQAMKMNRHLGAKFQIPAGSVSVISLITIALWLPFYDRILVPKLR 440

Query: 300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----MSQVSVFWLAPQ 355
           K+TKHEGGITLL RIGIGM+FSILSM+VAG VE+ RR SA+ +P    ++ +SV WLAP 
Sbjct: 441 KMTKHEGGITLLLRIGIGMVFSILSMVVAGYVEKVRRDSANSNPTPLGIAPMSVLWLAPH 500

Query: 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARH 415
           LILMG CEAFNIIGQIEFFN+QFP+HM+SI NS   CSFG +SY+SS+++ IVH  T  H
Sbjct: 501 LILMGLCEAFNIIGQIEFFNRQFPEHMRSIGNSFFSCSFGVSSYVSSIIVNIVHHSTRTH 560

Query: 416 GHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 472
            HPDWLT+DI+AGRLDYFY+LIAGL  LN+V+F+Y ARRY+YK  +  L++ + +EL
Sbjct: 561 SHPDWLTDDINAGRLDYFYYLIAGLTSLNLVFFIYVARRYQYKGNVDLLDETHQVEL 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424885|ref|XP_002269340.1| PREDICTED: nitrate transporter 1.7 [Vitis vinifera] gi|296086440|emb|CBI32029.3| unnamed protein product [Vitis vinifera]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/477 (65%), Positives = 398/477 (83%), Gaps = 7/477 (1%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           M+T+TLT+W+PQLHPP C   +    QC    S Q+G+L +GLG L+IGTGGIRPCSIPF
Sbjct: 138 MVTLTLTSWIPQLHPPSCTEDQQQNDQCTGPTSAQMGILFLGLGFLTIGTGGIRPCSIPF 197

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD TT++G +GINSF+NWYYT+FT+V++I  T++VYIQDSVSWV+GFGIPT+LM+G
Sbjct: 198 GVDQFDPTTEQGRRGINSFYNWYYTSFTLVLMIALTLVVYIQDSVSWVLGFGIPTLLMVG 257

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLF 179
           +IILF +G ++YV V+PEGSIFSGI +V VAAYKKRR+ +P  + +  G +YDPP  K  
Sbjct: 258 SIILFFLGTRVYVYVKPEGSIFSGIARVFVAAYKKRRVKIPV-EGEKEGAYYDPPLTKGS 316

Query: 180 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 239
           +++KLP T +FR+LNKAA+I++  E   +G P NQWRLCSIQQVEEVKCL+KIIP+WA+G
Sbjct: 317 IVAKLPFTKRFRWLNKAAVILE-GEKDANGCPSNQWRLCSIQQVEEVKCLLKIIPVWASG 375

Query: 240 IISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
           II  T+ISQQGTFTVSQA+KM+RHLGPKFQIP G++ VISM+T+G+W+PFYD +LVPAL+
Sbjct: 376 IICFTAISQQGTFTVSQALKMDRHLGPKFQIPAGSLIVISMLTVGIWVPFYDRILVPALQ 435

Query: 300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHL----HPMSQVSVFWLAPQ 355
           KITKHEGGITLLQR+GIG++FSILSM+V+GLVER RRASA L    H ++ +SV WLAPQ
Sbjct: 436 KITKHEGGITLLQRMGIGIVFSILSMVVSGLVERERRASAILQAGPHGIAPMSVMWLAPQ 495

Query: 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARH 415
           LILMGF EAFNIIGQIEF+NK+FP++M+SIANSL FC+   ASYLSSL++ IVH VT + 
Sbjct: 496 LILMGFAEAFNIIGQIEFYNKEFPENMRSIANSLFFCTIAGASYLSSLVVVIVHDVTGKA 555

Query: 416 GHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 472
           G   WLT +I+ G++DY+Y+L+AG+G LN++YFL+CARRYRYKSG    E++  L+L
Sbjct: 556 GRSAWLTKNINQGKVDYYYYLLAGMGVLNLIYFLFCARRYRYKSGHGVTEEEPHLDL 612

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498154|ref|XP_003517918.1| PREDICTED: nitrate transporter 1.7-like [Glycine max]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/483 (66%), Positives = 386/483 (79%), Gaps = 7/483 (1%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           M+ VTLTAWLP+LHPP C   +    QC  A++  LG L+ GL LLS+G+ GIRPCSIPF
Sbjct: 140 MVVVTLTAWLPELHPPPCTPQQQALNQCVKASTPHLGALLTGLCLLSVGSAGIRPCSIPF 199

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD +TDEG KGINSFFNWYYTTFTVV+LITQTV+VYIQDSVSW IGF IPTV M  
Sbjct: 200 GVDQFDPSTDEGKKGINSFFNWYYTTFTVVLLITQTVVVYIQDSVSWKIGFAIPTVCMFC 259

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLF 179
           +II+F VG ++YV V+PEGSIF+ I QVLVAAY+KR++ LP+ +    G+FYDPP     
Sbjct: 260 SIIMFFVGTRIYVHVKPEGSIFTSIAQVLVAAYRKRKVELPR-EKHVDGVFYDPPLIGTN 318

Query: 180 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 239
           VLSKLPLT+QFR LNKAA+I++  EL PD +  N+W+L SIQQVEEVKCL +I PIWAAG
Sbjct: 319 VLSKLPLTNQFRGLNKAAVIME-GELNPDRSRANKWKLVSIQQVEEVKCLARIFPIWAAG 377

Query: 240 IISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
           I+  TS++QQGTFTVSQA+KM+RHLGPKFQIP G++GVIS ITIG+W+PFYD ++VP LR
Sbjct: 378 ILGFTSMAQQGTFTVSQALKMDRHLGPKFQIPAGSLGVISFITIGVWVPFYDRIMVPTLR 437

Query: 300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----MSQVSVFWLAPQ 355
           ++TKHEGGITLLQRIGIGM+FSILSM+VA LVE+ RR  A+ +P    ++ +SV WL PQ
Sbjct: 438 RVTKHEGGITLLQRIGIGMVFSILSMVVAALVEKVRRDLANANPSPLGIAPMSVLWLVPQ 497

Query: 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARH 415
           L+LMG CEAFN+IGQIEFFN+QFPDHM+SIAN+L  CSF  ASY+SS L+T VH VT  H
Sbjct: 498 LVLMGLCEAFNVIGQIEFFNRQFPDHMRSIANALFSCSFAGASYVSSALVTTVHHVTRTH 557

Query: 416 GHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVDP 475
            HPDWLTNDI+AGRLDYFY+L+AG G LN+VYFL  A+RY YK      ++  D+EL   
Sbjct: 558 SHPDWLTNDINAGRLDYFYYLVAGTGVLNLVYFLIVAQRYHYKGSGDLQDNAQDVELASK 617

Query: 476 TKQ 478
            K 
Sbjct: 618 GKS 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102695|ref|XP_002312780.1| predicted protein [Populus trichocarpa] gi|222852600|gb|EEE90147.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/467 (69%), Positives = 389/467 (83%), Gaps = 11/467 (2%)

Query: 1   MLTVTLTAWLPQLHPPKCDVA--KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 58
           M+TVT TAW+P LHP KC+    +  +G C+S  SMQLGVL++GLG LSIGTGGIRPCSI
Sbjct: 80  MVTVTSTAWVPYLHPQKCEPEGKQQSYGNCESPTSMQLGVLLLGLGFLSIGTGGIRPCSI 139

Query: 59  PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLM 118
           PFGVDQFD TT+EG+KGI+S++NWYYTTFTVV+LIT T +VY+QDSVSWV+GFGIPTVLM
Sbjct: 140 PFGVDQFDPTTEEGIKGISSYYNWYYTTFTVVMLITLTAVVYVQDSVSWVLGFGIPTVLM 199

Query: 119 IGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQG----QMDHHGIFYDP 174
           + +IILF +G ++YV V+PEGS+FSGI QV V+AYKKRRL LP      Q+D  GIFYDP
Sbjct: 200 LCSIILFFIGTRIYVHVKPEGSVFSGIAQVFVSAYKKRRLKLPDNCDGEQVD--GIFYDP 257

Query: 175 PPK--LFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKI 232
           P K  L +LSKLPLT+Q RFLNKAAMI    +LKPDG+   QWRLCS+QQVEEVKCLIKI
Sbjct: 258 PIKDQLTILSKLPLTNQIRFLNKAAMIEKETDLKPDGSCAKQWRLCSVQQVEEVKCLIKI 317

Query: 233 IPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDT 292
            PIWA+ I+SLTS+ QQGTFTVSQA+KM+RHLG KFQIP  ++ V+S+ITIG+WLPFYD 
Sbjct: 318 GPIWASSIVSLTSMVQQGTFTVSQALKMDRHLGEKFQIPASSIIVVSLITIGIWLPFYDR 377

Query: 293 VLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ-VSVFW 351
           VLVPA+RK+TKHEGGIT+LQRIGIG +FS+LSM+VAGLVER RRA+A  HP +  +SVFW
Sbjct: 378 VLVPAIRKVTKHEGGITILQRIGIGNVFSVLSMVVAGLVERERRAAAISHPEAAPMSVFW 437

Query: 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGV 411
           LAPQL++MG CEAF   GQIEF+NKQFPDHM+S+ NSL FCSF  ASYLS++L +IVH V
Sbjct: 438 LAPQLVVMGLCEAFVGTGQIEFYNKQFPDHMRSLGNSLFFCSFAGASYLSTMLGSIVHKV 497

Query: 412 TARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458
           T    HPDWLTND++AG LDYFYFL+AG+G +N  YFL CA RYRYK
Sbjct: 498 TGTRHHPDWLTNDLNAGNLDYFYFLLAGMGVVNWFYFLLCAHRYRYK 544

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501934|ref|XP_003519778.1| PREDICTED: nitrate transporter 1.7-like [Glycine max]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/479 (65%), Positives = 381/479 (79%), Gaps = 7/479 (1%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           M+ VTLTAWLP+LHPP C   +    QC  A++   G L+ GL LLSIG+ GIRPCSIPF
Sbjct: 138 MVMVTLTAWLPELHPPPCTPQQQALNQCVKASTPHQGALLTGLCLLSIGSAGIRPCSIPF 197

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD TTDEG KGINSFFNWYYTTFTVV+LITQTV+VYIQDSVSW IGF IPTV M  
Sbjct: 198 GVDQFDPTTDEGKKGINSFFNWYYTTFTVVLLITQTVVVYIQDSVSWKIGFAIPTVCMFC 257

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLF 179
           +II+F VG ++YV V+PEGSIF+ I QVLVAAY+KR++ LP  +    G+FYDPP     
Sbjct: 258 SIIMFFVGTRIYVHVKPEGSIFTSIAQVLVAAYRKRKVELPS-EKHVDGVFYDPPLTGTQ 316

Query: 180 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 239
           V SKLPLT+QFR LNKAA+I++  E  PDG+  N+W++ SIQQVE+VKCL +I PIWAAG
Sbjct: 317 VFSKLPLTNQFRCLNKAAVIME-GEQNPDGSRANKWKVVSIQQVEDVKCLARIFPIWAAG 375

Query: 240 IISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
           I+  TS++QQGTFTVSQA+KM+RHLG KFQIP G++GVIS IT+G+W+PFYD ++VP LR
Sbjct: 376 ILGFTSMAQQGTFTVSQALKMDRHLGAKFQIPAGSLGVISFITVGVWVPFYDRIMVPTLR 435

Query: 300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----MSQVSVFWLAPQ 355
           +ITKHEGGITLLQRIGIGM+FSILSM+ A LVE+ RR  A+ +P    ++ +SV WL PQ
Sbjct: 436 RITKHEGGITLLQRIGIGMVFSILSMVAAALVEKVRRDLANANPSPLGIAPMSVLWLVPQ 495

Query: 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARH 415
           L+LMG CEAFN+IGQIEFFN+QFP+HM+SIAN+L FCS+  A+Y+SS L+T VH VT  H
Sbjct: 496 LVLMGLCEAFNVIGQIEFFNRQFPEHMRSIANALFFCSYAGANYVSSALVTTVHHVTRTH 555

Query: 416 GHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVD 474
            HPDWLTNDI+AGRLDYFY+L+AG+G LN+VYFL  A+RY YK      +   D+EL  
Sbjct: 556 SHPDWLTNDINAGRLDYFYYLVAGIGVLNLVYFLIVAQRYHYKGSGDLQDTTQDVELAS 614

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486541|ref|XP_003613558.1| Peptide transporter PTR1 [Medicago truncatula] gi|355514893|gb|AES96516.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/477 (66%), Positives = 382/477 (80%), Gaps = 7/477 (1%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           M  VTLTAWLP+L PP C   +    QC +ANS Q+G L MGL  LSIG+ GIRPCSIPF
Sbjct: 117 MTAVTLTAWLPKLQPPSCTPQQQALNQCVTANSSQVGFLFMGLIFLSIGSSGIRPCSIPF 176

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD TT+EG KGINSFFNWYYT+FTVV+L TQTV+VYIQDSVSW  GF IPT+ M+ 
Sbjct: 177 GVDQFDPTTEEGKKGINSFFNWYYTSFTVVLLFTQTVIVYIQDSVSWKFGFAIPTLCMLF 236

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLF 179
           +IILF +G K+YV V+PEGSIFS I QVLVA++KKR++ LP  +    GIFYDPP     
Sbjct: 237 SIILFFIGTKIYVHVKPEGSIFSSIAQVLVASFKKRKVKLPN-EKHVDGIFYDPPLIGKA 295

Query: 180 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 239
           +LSKLP T+QFR L+KAA++++  +L PDGT VNQW L SIQQVEEVKCL + +PIWAAG
Sbjct: 296 ILSKLPPTNQFRVLDKAALVME-GDLNPDGTIVNQWNLVSIQQVEEVKCLARTLPIWAAG 354

Query: 240 IISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
           I+  T+++QQGTF VSQAMKM+RHLGPKFQIP G++GVIS+I IGLW+PFYD + VP+LR
Sbjct: 355 ILGFTAMAQQGTFIVSQAMKMDRHLGPKFQIPAGSLGVISLIVIGLWVPFYDRICVPSLR 414

Query: 300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ----VSVFWLAPQ 355
           KITK+EGGITLLQRIGIGM+FSI+SMIVAGLVE+ RR  A+ +P  Q    +SV WL PQ
Sbjct: 415 KITKNEGGITLLQRIGIGMVFSIISMIVAGLVEKVRRDVANSNPTPQGIAPMSVMWLFPQ 474

Query: 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARH 415
           L+LMGFCEAFNIIG IEFFN+QFPDHM+SIAN+L  CSF  A+Y+SS+L+  VH VT  H
Sbjct: 475 LVLMGFCEAFNIIGLIEFFNRQFPDHMRSIANALFSCSFALANYVSSILVITVHSVTKTH 534

Query: 416 GHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 472
            HPDWLTN+I+ GRLDYFY+L+AG+G LN+VYFLY ++RY YK  +   E   D+EL
Sbjct: 535 NHPDWLTNNINEGRLDYFYYLLAGVGVLNLVYFLYVSQRYHYKGSVDIQEKPMDVEL 591

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790444|ref|XP_002863113.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297308935|gb|EFH39372.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/473 (61%), Positives = 371/473 (78%), Gaps = 8/473 (1%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           ++T+TLTA LPQLHP  C+   P    C   N +Q GVL++GL  LS+G+GGIRPCSIPF
Sbjct: 136 LITITLTASLPQLHPASCNSQDPL--SCGGPNKLQFGVLLLGLCFLSVGSGGIRPCSIPF 193

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD  T++G KG+ SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM  
Sbjct: 194 GVDQFDQRTEDGAKGVASFFNWYYLTFTVVLIITQTVIVYIQDQVSWIIGFSIPTGLMAL 253

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
           A+++F  G K YV V+PEGSIFSGI QV+VAA KKR+L +P  + D    +YDP  K  V
Sbjct: 254 AVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKVP-AEDDGTVNYYDPAIKSSV 312

Query: 181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 240
           LSKL  ++QFRFL+KAA+I++  +L P+G P ++WRLCS+Q+VEEVKCLI+I+P+W+AGI
Sbjct: 313 LSKLHRSNQFRFLDKAAVIIEG-DLTPEGAPADKWRLCSVQEVEEVKCLIRIVPVWSAGI 371

Query: 241 ISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
           ISL +++ QGTFTVSQA+KM RHLGP F+IP G++ VIS++TIG++LPFYD V VP +R+
Sbjct: 372 ISLAAMTTQGTFTVSQALKMERHLGPHFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRR 431

Query: 301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQL 356
           IT H+ GITLLQRIG G+IF+I SMIVAG+VER RR     +     M+ +SVFWL+PQL
Sbjct: 432 ITGHKSGITLLQRIGTGIIFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQL 491

Query: 357 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHG 416
           ILMG CEAFNIIGQIEFFN QFP+HM+SIANSL   SF  +SYLSSLL+T+VH  +  H 
Sbjct: 492 ILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSLLVTVVHKFSGGHD 551

Query: 417 HPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND 469
            PDWL  +++AG+LDYFY+LIA +G +N+VYF YCAR YRYK G+Q  + + D
Sbjct: 552 RPDWLNKNLNAGKLDYFYYLIAIMGVVNLVYFWYCARGYRYKVGLQIEDFEED 604

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409391|ref|NP_564979.1| nitrate transporter 1.7 [Arabidopsis thaliana] gi|75158815|sp|Q8RX77.1|PTR21_ARATH RecName: Full=Nitrate transporter 1.7 gi|19699104|gb|AAL90918.1| At1g69870/T17F3_10 [Arabidopsis thaliana] gi|21928025|gb|AAM78041.1| At1g69870/T17F3_10 [Arabidopsis thaliana] gi|332196872|gb|AEE34993.1| nitrate transporter 1.7 [Arabidopsis thaliana]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/484 (60%), Positives = 376/484 (77%), Gaps = 10/484 (2%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           ++T+TLTA  PQLHP  C+   P    C   N +Q+GVL++GL  LS+G+GGIRPCSIPF
Sbjct: 137 LITITLTASFPQLHPASCNSQDPL--SCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPF 194

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD  T+EGVKG+ SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM  
Sbjct: 195 GVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMAL 254

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
           A+++F  G K YV V+PEGSIFSGI QV+VAA KKR+L LP  + D    +YDP  K  V
Sbjct: 255 AVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSV 313

Query: 181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 240
           LSKL  ++QFR L+KAA++++  +L P+G P ++WRLCS+Q+VEEVKCLI+I+PIW+AGI
Sbjct: 314 LSKLHRSNQFRCLDKAAVVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGI 372

Query: 241 ISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
           ISL +++ QGTFTVSQA+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+
Sbjct: 373 ISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRR 432

Query: 301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQL 356
           IT H+ GITLLQRIG G++F+I SMIVAG+VER RR     +     M+ +SVFWL+PQL
Sbjct: 433 ITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQL 492

Query: 357 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHG 416
           ILMG CEAFNIIGQIEFFN QFP+HM+SIANSL   SF  +SYLSS L+T+VH  +  H 
Sbjct: 493 ILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHD 552

Query: 417 HPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVD 474
            PDWL  +++AG+LDYFY+LIA LG +N+VYF YCAR YRYK G  I+  E+    + V+
Sbjct: 553 RPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVE 612

Query: 475 PTKQ 478
            T +
Sbjct: 613 MTSK 616

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12325237|gb|AAG52567.1|AC010675_15 putative peptide transporter; 37139-33250 [Arabidopsis thaliana]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/484 (60%), Positives = 376/484 (77%), Gaps = 10/484 (2%)

Query: 1   MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 60
           ++T+TLTA  PQLHP  C+   P    C   N +Q+GVL++GL  LS+G+GGIRPCSIPF
Sbjct: 161 LITITLTASFPQLHPASCNSQDPL--SCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPF 218

Query: 61  GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 120
           GVDQFD  T+EGVKG+ SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM  
Sbjct: 219 GVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMAL 278

Query: 121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
           A+++F  G K YV V+PEGSIFSGI QV+VAA KKR+L LP  + D    +YDP  K  V
Sbjct: 279 AVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSV 337

Query: 181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 240
           LSKL  ++QFR L+KAA++++  +L P+G P ++WRLCS+Q+VEEVKCLI+I+PIW+AGI
Sbjct: 338 LSKLHRSNQFRCLDKAAVVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGI 396

Query: 241 ISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
           ISL +++ QGTFTVSQA+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+
Sbjct: 397 ISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRR 456

Query: 301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQL 356
           IT H+ GITLLQRIG G++F+I SMIVAG+VER RR     +     M+ +SVFWL+PQL
Sbjct: 457 ITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQL 516

Query: 357 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHG 416
           ILMG CEAFNIIGQIEFFN QFP+HM+SIANSL   SF  +SYLSS L+T+VH  +  H 
Sbjct: 517 ILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHD 576

Query: 417 HPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVD 474
            PDWL  +++AG+LDYFY+LIA LG +N+VYF YCAR YRYK G  I+  E+    + V+
Sbjct: 577 RPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVE 636

Query: 475 PTKQ 478
            T +
Sbjct: 637 MTSK 640

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.991	0.764	0.547	1.4e-135
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.960	0.796	0.539	5.9e-128
TAIR|locus:2196734	555	AT1G69860 [Arabidopsis thalian	0.933	0.803	0.456	2.2e-105
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.962	0.783	0.414	1.5e-92
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.941	0.730	0.418	6.5e-90
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.943	0.756	0.374	5e-76
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.939	0.787	0.351	3.1e-74
TAIR|locus:2147499	559	AT5G28470 [Arabidopsis thalian	0.916	0.783	0.357	5.1e-74
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.933	0.734	0.343	2.3e-71
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.930	0.780	0.334	2.1e-70

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 265/484 (54%), Positives = 338/484 (69%)

Query:     1 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPF 60
             ++T+TLTA  PQLHP  C+ ++ P   C   N +Q                  RPCSIPF
Sbjct:   137 LITITLTASFPQLHPASCN-SQDPLS-CGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPF 194

Query:    61 GVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIG 120
             GVDQFD  T+EGVKG+ SFFNWYY               YIQD VSW+IGF IPT LM  
Sbjct:   195 GVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMAL 254

Query:   121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
             A+++F  G K YV V+PEGSIFSGI QV+VAA KKR+L LP  + D    +YDP  K  V
Sbjct:   255 AVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSV 313

Query:   181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXX 240
             LSKL  ++QFR L+KAA++++  +L P+G P ++WRLCS+Q+VEEVKCL           
Sbjct:   314 LSKLHRSNQFRCLDKAAVVIEG-DLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGI 372

Query:   241 XSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
              SL +++ QGTFTVSQA+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+
Sbjct:   373 ISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRR 432

Query:   301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRA-SAHL-HP--MSQVSVFWLAPQL 356
             IT H+ GITLLQRIG G++F+I SMIVAG+VER RR  S +   P  M+ +SVFWL+PQL
Sbjct:   433 ITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQL 492

Query:   357 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHG 416
             ILMG CEAFNIIGQIEFFN QFP+HM+SIANSL   SF  +SYLSS L+T+VH  +  H 
Sbjct:   493 ILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHD 552

Query:   417 HPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVD 474
              PDWL  +++AG+LDYFY+LIA LG +N+VYF YCAR YRYK G  I+  E+    + V+
Sbjct:   553 RPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVE 612

Query:   475 PTKQ 478
              T +
Sbjct:   613 MTSK 616

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 253/469 (53%), Positives = 319/469 (68%)

Query:     1 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPF 60
             ++TVTLTA LPQLHPP C+   P   +C   N +Q                  RPCSIPF
Sbjct:   100 LMTVTLTACLPQLHPPPCNNPHPD--ECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPF 157

Query:    61 GVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIG 120
             GVDQFD  T++G+KG+ SFFNWYY               Y+Q +VSWVIGF IPT LM  
Sbjct:   158 GVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLMAC 216

Query:   121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
             A++LF VG + YV V+PEGS+FSGI +V+VAA KKR L +     D    +Y+PP K  V
Sbjct:   217 AVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVD-DGTEEYYEPPVKPGV 275

Query:   181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXX 240
             LSKLPLT QF+FL+KAA+I+D  +L  +G P N+WRLCSIQ+VEEVKCL           
Sbjct:   276 LSKLPLTDQFKFLDKAAVILDG-DLTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGI 334

Query:   241 XSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
              S+ +++ Q TF V QA KM+RH+GP F+IP  ++ VIS ITIG+W+P Y+ +LVP L +
Sbjct:   335 ISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASITVISYITIGIWVPIYEHLLVPFLWR 394

Query:   301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMG 360
             + K    +TLLQR+GIG++F+ILSM  AG VE  RR  A    M+Q+SVFWLA  LILMG
Sbjct:   395 MRKFR--VTLLQRMGIGIVFAILSMFTAGFVEGVRRTRAT--EMTQMSVFWLALPLILMG 450

Query:   361 FCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDW 420
              CE+FN IG IEFFN QFP+HM+SIANSL   SF  A+YLSSLL+T VH V+    HPDW
Sbjct:   451 LCESFNFIGLIEFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDW 510

Query:   421 LTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND 469
             L  D+D G+LDYFY+LIA LG +N+VYF YCA RY+YK+G Q +ED N+
Sbjct:   511 LNKDLDRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQYKAGSQ-IEDFNE 558

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)]

 Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
 Identities = 210/460 (45%), Positives = 292/460 (63%)

Query:     1 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPF 60
             ML +T T+ +P L PP C  A    GQC   +  Q                  R CS+PF
Sbjct:   104 MLVLTFTSLVPNLRPPPC-TADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPF 162

Query:    61 GVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIG 120
              +DQFD +T+EG +G  SFF+WYY               Y+Q+++SW IGF IPTVL   
Sbjct:   163 SLDQFDDSTEEGREGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFF 222

Query:   121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180
             A++L  VG + YV V+PEGS+FSG+ +VLVAAYKKR+     G +D+H    +   +   
Sbjct:   223 ALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKKRKARFTSG-IDYHQPLLETDLQS-- 279

Query:   181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXX 240
              +KL LT QFRFLNKA ++++N+E    G    +WR C+++Q+E++K +           
Sbjct:   280 -NKLVLTDQFRFLNKAVIVMNNDEA---GN--EEWRTCTVRQIEDIKSIISIIPIFASSI 333

Query:   241 XSLTSISQQGTFTVSQAMKMNRHL-GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
                 +++QQ TFTVSQA+KM+    G  + IPP ++ VIS++ IG+WLPFY+TVLV  + 
Sbjct:   334 IGFLAMNQQQTFTVSQALKMDLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIE 393

Query:   300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILM 359
              ITK  GGI+LLQ++GIG IFSI +M+++G+VER RR    L+ + ++SVFWL PQ +LM
Sbjct:   394 NITKQNGGISLLQKVGIGNIFSISTMLISGIVERKRR-DLSLNGV-KMSVFWLTPQQVLM 451

Query:   360 GFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPD 419
             GF + F I+G  EFFNKQ P +M+SI NSLL+     ASYLSS +++IVH VTAR G   
Sbjct:   452 GFYQVFTIVGLTEFFNKQVPINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQ-S 510

Query:   420 WLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKS 459
             WLT+DID  +LD FY+ IA L  LN ++F +CARRYRY++
Sbjct:   511 WLTDDIDKSKLDCFYYFIAALSTLNFIFFFWCARRYRYRN 550

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 198/478 (41%), Positives = 272/478 (56%)

Query:     2 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFG 61
             + + LTA +  LHP +C  AK     C   +  Q                  RPC++PFG
Sbjct:   106 VAMDLTAVIHPLHPAQC--AKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFG 163

Query:    62 VDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGA 121
              DQFD  T EG +GI SFFNWY+               Y+Q +VSW IG  IP +LM+  
Sbjct:   164 ADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLG 223

Query:   122 IILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVL 181
              I+F  G KLYV V+  GS    I +V+V A KKRRL  P G  +     Y+     F  
Sbjct:   224 CIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-PVGPNE----LYNYIASDFKN 278

Query:   182 SKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXX 241
             SKL  T QFRFL+K+A+   +++L  DG+PV+ W+LCS+QQVEEVKC+            
Sbjct:   279 SKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAAL 338

Query:   242 SLTSISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRK 300
                +  QQ T+T+ Q+++ +R LGP  FQIP G+  V  M+ + +++P YD VLVP LRK
Sbjct:   339 FYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRK 398

Query:   301 ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----------MSQVSVF 350
              T  +GGIT LQR+G G+   I SM+V+ +VE+ RR  A   P          +S +S  
Sbjct:   399 YTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGM 458

Query:   351 WLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410
             WL PQL+LMG  +A   +GQ+EF+ KQFP++M+S A SL +C  G ASYLS+ L++ VH 
Sbjct:   459 WLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHD 518

Query:   411 VTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQN 468
              T       WL  D++ GRL+YFYFL+AG+  LN+ YFL  +  YRYK  +   +D +
Sbjct:   519 TTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYKDVVAKDKDMD 576

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 195/466 (41%), Positives = 262/466 (56%)

Query:     4 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPFGVD 63
             + LTA +PQLHP  C  A      C   +  Q                  RPC++ FG D
Sbjct:   132 ILLTAAVPQLHPAACGTAADSI--CNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGAD 189

Query:    64 QFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAII 123
             QF+  ++ G +GI+SFFNWY+               Y+Q +VSW IG  IP VLM  A +
Sbjct:   190 QFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACL 249

Query:   124 LFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSK 183
             +F  G KLYV ++  GS  +GI QV+  A KKR L  P  Q     ++   PPK +  SK
Sbjct:   250 IFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLK-PAKQ-PWLNLYNYYPPK-YANSK 306

Query:   184 LPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSL 243
             L  T QFRFL+KAA++   ++L+PDG P + W+LC++QQVEEVKC+              
Sbjct:   307 LKYTDQFRFLDKAAILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYY 366

Query:   244 TSISQQGTFTVSQAMKMNRHLGPK-FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 302
              +I+QQ T+ V QA++ +R LG   F IP  T  V  M  + +++  YD VLVP +R+IT
Sbjct:   367 LTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRIT 426

Query:   303 KHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP----------MSQVSVFWL 352
               + GITLLQRIG G+ F+  S++VAG VE  RR  A   P          +S +S  WL
Sbjct:   427 GLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWL 486

Query:   353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 412
              PQL L G  EAF  IGQ+EF+ KQFP++M+S A S+ +   G +SYL S LI  VH  T
Sbjct:   487 IPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTT 546

Query:   413 ARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458
                   +WL  D++ GRLD FYF+IAG+  +N  YFL  +R YRYK
Sbjct:   547 QNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWYRYK 592

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 175/467 (37%), Positives = 256/467 (54%)

Query:     1 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPF 60
             M  +T++A +P L PP C   +     C  A++ Q                  RPC + F
Sbjct:   109 MTLLTISAIIPTLRPPPCKGEEV----CVVADTAQLSILYVALLLGALGSGGIRPCVVAF 164

Query:    61 GVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIG 120
             G DQFD +         ++FNWYY               +IQD+V W +G GIPTV M  
Sbjct:   165 GADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFL 224

Query:   121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQG-QMDHHGIFYDPPPKLF 179
             ++I F+ G +LY  + P GS F+ + QV VAA++KR+L +     + +     D P  L 
Sbjct:   225 SVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLG 284

Query:   180 VLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXX 239
                KL  T    FL+KAA++ + + LKP   P N WRL ++ +VEE+K +          
Sbjct:   285 --GKLTHTKHMSFLDKAAIVTEEDNLKPGQIP-NHWRLSTVHRVEELKSVIRMGPIGASG 341

Query:   240 XXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 299
                +T+ +QQGTF++ QA  MNRHL   FQIP G++ V + + +   + FYD V V   R
Sbjct:   342 ILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVAR 401

Query:   300 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASA--H-L----HPMSQVSVFWL 352
             K T  E GIT L R+GIG + SI++ +VAG VE  R++ A  H L    H +  +S  WL
Sbjct:   402 KFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWL 461

Query:   353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 412
              PQ  L G  EAF  IG +EFF  Q P+ M+S A +L + +    +Y+S+LL+T+VH  +
Sbjct:   462 IPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFS 521

Query:   413 ARHGHPDWLT-NDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458
             A+    +WL  N+++ GRL+YFY+LI  L  +N+VY+L+CA+ Y YK
Sbjct:   522 AKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 165/469 (35%), Positives = 251/469 (53%)

Query:     1 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPF 60
             M  +TL+A +P L P  C+        C   NS Q                  +PC   F
Sbjct:   110 MTLLTLSASVPGLKPGNCNA-----DTCHP-NSSQTAVFFVALYMIALGTGGIKPCVSSF 163

Query:    61 GVDQFDATTD-EGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMI 119
             G DQFD   + E +K  +SFFNW+Y               +IQ +V W  GFG+PTV M+
Sbjct:   164 GADQFDENDENEKIKK-SSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMV 222

Query:   120 GAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFY--DPPPK 177
              A+  F  G + Y L  P GS  + I QV+VAA++K  + +P+   D   +F   D    
Sbjct:   223 IAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPE---DKSLLFETADDESN 279

Query:   178 LFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXX 237
             +    KL  T   +F +KAA+   ++ +K DG  VN WRLCS+ QVEE+K +        
Sbjct:   280 IKGSRKLVHTDNLKFFDKAAVESQSDSIK-DGE-VNPWRLCSVTQVEELKSIITLLPVWA 337

Query:   238 XXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPA 297
                   T  SQ  T  V Q   M++H+G  F+IP  ++ +   +++  W P YD  ++P 
Sbjct:   338 TGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPL 397

Query:   298 LRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLH---PMSQV--SVFWL 352
              RK T++E G T LQR+GIG++ SI +MI AG++E  R      H      Q+  S+FW 
Sbjct:   398 ARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQ 457

Query:   353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 412
              PQ +L+G  E F  IGQ+EFF  Q PD M+S+ ++L   +    +YLS++L+T+V  +T
Sbjct:   458 IPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT 517

Query:   413 ARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI 461
              ++G P W+ ++++ G LDYF++L+A L  LN + +L+ ++RY+YK  +
Sbjct:   518 KKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAV 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 163/456 (35%), Positives = 250/456 (54%)

Query:     6 LTAWLPQLHPPKCDVAKPPFGQCKSANSM-QXXXXXXXXXXXXXXXXXXRPCSIPFGVDQ 64
             LTA LP L P  C    P    C +  +  Q                  RPC+I FG DQ
Sbjct:   108 LTAALPSLRPDAC--IDP--SNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQ 163

Query:    65 FDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIGAIIL 124
             FD +T +G   + +FFNW+Y               YIQ ++SWVIGF IPT  +  +I  
Sbjct:   164 FDTSTKKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITT 223

Query:   125 FLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHH-GIFYDPPPKLFVLSK 183
             F++G+  Y+  + EGS+F+ I +V+ AA KKR++  P   +  + G   D  P   V  K
Sbjct:   224 FVIGQHTYICAKAEGSVFADIVKVVTAACKKRKVK-PGSDITFYIGPSNDGSPTTLVRDK 282

Query:   184 LPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXXXXXXSL 243
                 H+ RF +KA+++ + NEL  DG    +WRLCS+QQV+ +KC+              
Sbjct:   283 ----HRLRFFDKASIVTNPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACF 338

Query:   244 TSISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 302
                 QQ  + + QAM+M++  GP  FQ+P G + ++SMIT+ +W+  Y+ V++P +++IT
Sbjct:   339 ILTDQQNIYGILQAMQMDKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQIT 398

Query:   303 KHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP--MSQVSVFWLAPQLILMG 360
               +  +TL  RI I  +  I+ MIVAG  E+ RRASA  +   +S VS+  L PQ  L G
Sbjct:   399 GRKKRLTLKHRIEI--VMGIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAG 456

Query:   361 FCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDW 420
               EAF+ +  +EF   + P+HM+++A ++ F S   ASY+ +LLI ++  VT + G   W
Sbjct:   457 LTEAFSAVALMEFLTVRMPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGK-SW 515

Query:   421 LTN-DIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 455
             L + D++  RL+ ++F+IAG+   N++YF   A RY
Sbjct:   516 LGDKDLNKNRLENYFFIIAGIQVANLLYFRLFASRY 551

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 161/469 (34%), Positives = 248/469 (52%)

Query:     1 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPF 60
             M+ + LTA LPQ+ P  CD        C S+ + Q                  RPCS+ F
Sbjct:   107 MVLLWLTAMLPQVKPSPCDPTAAG-SHCGSSTASQLALLYSAFALISIGSGGIRPCSLAF 165

Query:    61 GVDQFDATTD-EGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMI 119
             G DQ D   + +  + + SFF WYY               YIQ+ + W IGFG+P VLM+
Sbjct:   166 GADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLML 225

Query:   120 GAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIF--YDPPPK 177
              A +LF++   LYV      S+F+G+ Q +VAAYKKR+L+LP    DHH  F  Y     
Sbjct:   226 IAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLP----DHHDSFDCYYHMKD 281

Query:   178 LFVLSKLPLTHQFRFLNKAAMIVDNNE-LKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXX 236
               +  K P + + RFLNKA +I +  E +  DG  +N WRLC+  +VEE+K L       
Sbjct:   282 SEI--KAP-SQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIW 338

Query:   237 XXXXXSLTSISQQGTFTVSQAMKMNRHL---GPKFQIPPGTVGVISMITIGLWLPFYDTV 293
                     + SQ  +F + QA  M+R L   G  FQ+P G+ G+ ++I + LW+  YD  
Sbjct:   339 STGIMMSINTSQS-SFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRA 397

Query:   294 LVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASA-------HLHPMSQ 346
             ++P   KI      +++  R+G+G+  S L+M ++ +VE  RR  A       + + +  
Sbjct:   398 VIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVD 457

Query:   347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLIT 406
             +S  WL PQ +L G  EA   IGQ EFF  +FP  M SIA SL       AS L+S+++ 
Sbjct:   458 ISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLN 517

Query:   407 IVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 455
              V+ +T+R+G   W++++I+ G  +Y+Y+++A +  +N++Y++ C+  Y
Sbjct:   518 AVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSY 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 156/466 (33%), Positives = 241/466 (51%)

Query:     1 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXXXXXXXXXXXXXXXXXXRPCSIPF 60
             M  +T++A +P L  P C       G+   A + Q                  +PC   F
Sbjct:   111 MTLLTISASVPGL-TPTCS------GETCHATAGQTAITFIALYLIALGTGGIKPCVSSF 163

Query:    61 GVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGIPTVLMIG 120
             G DQFD T ++  +  +SFFNW+Y               +IQ +V W  G G+PTV M  
Sbjct:   164 GADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAI 223

Query:   121 AIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFY---DPPPK 177
             A++ F  G   Y L +P GS  + + QV+VA+ +K ++ +P+ +     + Y   D    
Sbjct:   224 AVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDE----SLLYENQDAESS 279

Query:   178 LFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLXXXXXXXX 237
             +    KL  T    F +KAA+  +++         + W+LC++ QVEE+K L        
Sbjct:   280 IIGSRKLEHTKILTFFDKAAVETESDN--KGAAKSSSWKLCTVTQVEELKALIRLLPIWA 337

Query:   238 XXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPA 297
                   +  SQ GT  V Q   +++H+GP F+IP  ++ +   +++  W P YD ++VP 
Sbjct:   338 TGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPF 397

Query:   298 LRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ-----VSVFWL 352
              RK T HE G T LQRIGIG++ SI SM+ AG++E  R      H +       +++FW 
Sbjct:   398 ARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQ 457

Query:   353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 412
              PQ  L+G  E F  IGQ+EFF  Q PD M+S+ ++L   +  F +YLS+ L+T+V  VT
Sbjct:   458 VPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVT 517

Query:   413 ARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458
                G P W+  +++ G LDYF++L+AGL  LN + +L+ A+ Y YK
Sbjct:   518 RSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RX77	PTR21_ARATH	No assigned EC number	0.6074	0.9916	0.7645	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028975001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (619 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
pfam00854	372	pfam00854, PTR2, POT family	4e-55
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-16
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	6e-09

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  187 bits (478), Expect = 4e-55
 Identities = 103/373 (27%), Positives = 170/373 (45%), Gaps = 36/373 (9%)

Query: 28  CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 87
             S + +Q+ +  +GL L+++GTGGI+P    FG DQFD T D      + FF+W+Y + 
Sbjct: 24  PPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQD---PRRDGFFSWFYFSI 80

Query: 88  TVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLY-VLVEPEGSIF-SGI 145
               LI   +  Y+Q +V + +GFG+P V M+ A+++FL+G + Y     P GS F   I
Sbjct: 81  NAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCI 140

Query: 146 GQVLVAAYKKRRLTLPQGQMDHHGIFY-DPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNE 204
             ++ AA K R     Q   D H +++         +S+  +  +   +           
Sbjct: 141 AFIITAAGKNR---KLQLPKDSHWLYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWA-- 195

Query: 205 LKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 264
                             V  ++ ++ ++PIWA  I+     +Q  T  V Q   M+R +
Sbjct: 196 -----------LFDQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRII 244

Query: 265 GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS 324
            P F+IPP +    + + + + LP  D ++ P LR     + G+TL QR G+GM   I++
Sbjct: 245 YPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVA 300

Query: 325 MIVAGLVE--RGRRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 378
             +A +VE  R R A+A           + + W  P+L + G   A    G +EF     
Sbjct: 301 NFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFISGVGLA----GALEFAPDAL 356

Query: 379 PDHMKSIANSLLF 391
           P  M S+   L  
Sbjct: 357 PSSMMSLWTLLSA 369

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 77/319 (24%), Positives = 139/319 (43%), Gaps = 56/319 (17%)

Query: 40  VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY------TTFTVVILI 93
           ++GL L+++GTGGI+PC   FG DQF    +  +     FF+++Y      + F+ +I  
Sbjct: 89  LVGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRFRFFSFFYFAINAGSLFSTIITP 145

Query: 94  TQTVLVY-IQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAA 152
                V        + + FG+P +LM  A+I+F +G K+Y    P G+I S + + +V A
Sbjct: 146 ILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFA 205

Query: 153 YKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 212
            KKR  T                         P  H   +L+ AA               
Sbjct: 206 LKKRFRT----------------RS----EDWPRLH---WLDWAAPKYL----------- 231

Query: 213 NQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP 272
                  I+ +   K L++++ ++    +      QQG+    QA +M+  +G  F I P
Sbjct: 232 -------IRMIRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-LFPIQP 283

Query: 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVE 332
             +  ++ + + + +P +D V+ PAL K        T L+++ +GM+ + L+  VA L++
Sbjct: 284 DQMQAVNPLLVLILVPIFDYVVYPALAKCGTR---FTSLRKMAVGMLLAALAFAVAALLQ 340

Query: 333 RGRRASAHLHPMSQVSVFW 351
                +    P + +  F 
Sbjct: 341 NKINPTLPEEPSASII-FL 358

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 73/378 (19%), Positives = 124/378 (32%), Gaps = 58/378 (15%)

Query: 36  LGVLVMGLGLLSIGTGGIRPCSIPFGVDQF---DATTDEGVKGINSFFNWYYTTFTVVIL 92
            G L +GL L+ +GTG  +P       + +   D   D G       F  +Y    +  L
Sbjct: 117 PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-------FTLFYMGINIGSL 169

Query: 93  ITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAA 152
           I   +   +  +  W +GFG+  V MI  +++FL+G++             GIG V    
Sbjct: 170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK----------GIGGVPDPN 219

Query: 153 YKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 212
                  LP                L V+    L       N  + ++    +       
Sbjct: 220 PLSFNFLLP------VLG------GLVVMILAALLTLLLNQNTFSGVLLVISILI-AIIY 266

Query: 213 NQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP 272
                 S +  +E + L+  IP++   +I      Q G+     A +        F++PP
Sbjct: 267 FAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPP 326

Query: 273 GT--------VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS 324
                     + + S I   LW         P+               +  +G+I + L 
Sbjct: 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTP------------IKFALGLILAGLG 374

Query: 325 MIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKS 384
            ++  L            P   VSV+WL    +L  F E F     +    K  P  +KS
Sbjct: 375 FLILLLAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKS 429

Query: 385 IANSLLFCSFGFASYLSS 402
              ++ F +      L  
Sbjct: 430 FIMAMWFLTVAAGQTLGG 447

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.32
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.12
PRK03545	390	putative arabinose transporter; Provisional	99.12
TIGR00893	399	2A0114 d-galactonate transporter.	99.08
PRK10054	395	putative transporter; Provisional	99.05
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.02
PRK09874	408	drug efflux system protein MdtG; Provisional	99.01
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.0
TIGR00900	365	2A0121 H+ Antiporter protein.	99.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.98
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.96
PRK05122	399	major facilitator superfamily transporter; Provisi	98.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.95
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.9
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.9
PRK10504	471	putative transporter; Provisional	98.89
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.89
TIGR00901	356	2A0125 AmpG-related permease.	98.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.82
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.81
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.79
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.78
PRK12382	392	putative transporter; Provisional	98.77
PRK11010	491	ampG muropeptide transporter; Validated	98.74
TIGR00895	398	2A0115 benzoate transport.	98.7
TIGR00898	505	2A0119 cation transport protein.	98.69
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.68
PRK11663	434	regulatory protein UhpC; Provisional	98.68
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.67
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.65
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.65
PRK12307	426	putative sialic acid transporter; Provisional	98.63
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.63
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.62
PRK09705	393	cynX putative cyanate transporter; Provisional	98.62
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.61
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.6
PRK03633	381	putative MFS family transporter protein; Provision	98.59
PRK09848	448	glucuronide transporter; Provisional	98.59
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.58
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.56
PRK03893	496	putative sialic acid transporter; Provisional	98.56
PRK09528	420	lacY galactoside permease; Reviewed	98.55
PRK11902	402	ampG muropeptide transporter; Reviewed	98.54
PRK15011	393	sugar efflux transporter B; Provisional	98.54
PRK11043	401	putative transporter; Provisional	98.53
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.51
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.51
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.49
PRK10091	382	MFS transport protein AraJ; Provisional	98.46
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.46
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.45
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.44
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.43
PF13347	428	MFS_2: MFS/sugar transport protein	98.42
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.42
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.41
TIGR00891	405	2A0112 putative sialic acid transporter.	98.39
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.39
PRK03699	394	putative transporter; Provisional	98.36
PLN00028	476	nitrate transmembrane transporter; Provisional	98.34
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.33
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.33
PRK10642	490	proline/glycine betaine transporter; Provisional	98.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.31
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.29
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.27
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.25
KOG2532	466	consensus Permease of the major facilitator superf	98.23
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.23
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.2
PRK09669	444	putative symporter YagG; Provisional	98.19
PRK10429	473	melibiose:sodium symporter; Provisional	98.17
PRK09952	438	shikimate transporter; Provisional	98.15
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.14
PRK15075	434	citrate-proton symporter; Provisional	98.09
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.07
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.05
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.03
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.87
TIGR00893	399	2A0114 d-galactonate transporter.	97.79
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.75
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.67
KOG2533	495	consensus Permease of the major facilitator superf	97.61
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.61
PRK11663	434	regulatory protein UhpC; Provisional	97.58
PRK03545	390	putative arabinose transporter; Provisional	97.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.57
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.56
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.53
TIGR00900	365	2A0121 H+ Antiporter protein.	97.52
PRK11462	460	putative transporter; Provisional	97.51
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.5
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.5
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.49
TIGR00891	405	2A0112 putative sialic acid transporter.	97.46
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.42
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.42
TIGR00895	398	2A0115 benzoate transport.	97.4
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.39
PRK10133	438	L-fucose transporter; Provisional	97.39
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.37
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.34
PRK09874	408	drug efflux system protein MdtG; Provisional	97.32
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.3
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.28
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.25
PRK12307	426	putative sialic acid transporter; Provisional	97.25
PRK10091	382	MFS transport protein AraJ; Provisional	97.25
PRK10054	395	putative transporter; Provisional	97.22
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.17
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.16
PRK10504	471	putative transporter; Provisional	97.15
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.14
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.14
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.12
PRK03699	394	putative transporter; Provisional	97.1
TIGR00805	633	oat sodium-independent organic anion transporter.	97.1
KOG2533	495	consensus Permease of the major facilitator superf	97.1
PTZ00207	591	hypothetical protein; Provisional	97.09
KOG2615	451	consensus Permease of the major facilitator superf	97.08
PRK03633	381	putative MFS family transporter protein; Provision	97.03
TIGR00805	633	oat sodium-independent organic anion transporter.	96.99
PRK09705	393	cynX putative cyanate transporter; Provisional	96.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.94
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	96.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.89
KOG3762	618	consensus Predicted transporter [General function	96.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.88
PRK03893	496	putative sialic acid transporter; Provisional	96.85
PRK11010	491	ampG muropeptide transporter; Validated	96.82
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.81
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.8
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.77
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.73
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.71
TIGR00898	505	2A0119 cation transport protein.	96.7
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.69
PRK10489	417	enterobactin exporter EntS; Provisional	96.68
PRK12382	392	putative transporter; Provisional	96.64
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.62
PRK10133	438	L-fucose transporter; Provisional	96.62
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.6
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.58
PRK05122	399	major facilitator superfamily transporter; Provisi	96.55
TIGR00901	356	2A0125 AmpG-related permease.	96.55
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.55
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.47
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.38
PRK11902	402	ampG muropeptide transporter; Reviewed	96.37
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.29
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.29
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.29
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.22
PRK11043	401	putative transporter; Provisional	96.19
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.18
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.16
KOG0569	485	consensus Permease of the major facilitator superf	96.06
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.01
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	95.85
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	95.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.76
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.62
PRK10642	490	proline/glycine betaine transporter; Provisional	95.58
COG2211	467	MelB Na+/melibiose symporter and related transport	95.54
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.47
PLN00028	476	nitrate transmembrane transporter; Provisional	95.45
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.23
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.75
KOG2532	466	consensus Permease of the major facilitator superf	94.63
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	94.61
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.61
TIGR00896	355	CynX cyanate transporter. This family of proteins	94.6
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.49
COG2270	438	Permeases of the major facilitator superfamily [Ge	94.48
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	94.16
PRK15011	393	sugar efflux transporter B; Provisional	94.08
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.03
KOG0254	513	consensus Predicted transporter (major facilitator	93.95
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.89
PRK09952	438	shikimate transporter; Provisional	93.88
PRK15075	434	citrate-proton symporter; Provisional	93.78
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	93.77
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	93.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	93.53
KOG3626	735	consensus Organic anion transporter [Secondary met	93.52
PRK15462	493	dipeptide/tripeptide permease D; Provisional	93.51
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	93.51
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	92.88
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	91.98
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	91.66
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	91.29
KOG2615	451	consensus Permease of the major facilitator superf	91.25
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	90.88
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	90.73
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	90.52
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	90.18
PF13347	428	MFS_2: MFS/sugar transport protein	90.12
PRK09528	420	lacY galactoside permease; Reviewed	89.99
KOG0254	513	consensus Predicted transporter (major facilitator	89.34
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	89.21
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	88.57
KOG0569	485	consensus Permease of the major facilitator superf	87.95
PTZ00207	591	hypothetical protein; Provisional	87.62
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	86.88
PRK09669	444	putative symporter YagG; Provisional	86.63
PRK11462	460	putative transporter; Provisional	86.43
KOG2816	463	consensus Predicted transporter ADD1 (major facili	86.41
PRK10429	473	melibiose:sodium symporter; Provisional	86.21
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.68
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	84.4
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	83.24
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	82.59
KOG3626	735	consensus Organic anion transporter [Secondary met	82.33
COG2211	467	MelB Na+/melibiose symporter and related transport	80.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	80.69
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	80.54
PF01891	205	CbiM: Cobalt uptake substrate-specific transmembra	80.05

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-75  Score=623.28  Aligned_cols=449  Identities=45%  Similarity=0.760  Sum_probs=404.5

Q ss_pred             EEEeeehhcCCCCCCCCCCCCCCCCCCcCCCchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHH
Q 011747            2 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN   81 (478)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~   81 (478)
                      .+||+++++|+|+|++| ...+.+..|+.|++.+...++.+|.++++|+|+.|||+.++++|||++.+++++..+.++|+
T Consensus       119 ~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFn  197 (571)
T KOG1237|consen  119 FGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFN  197 (571)
T ss_pred             HHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchh
Confidence            46899999999999999 22222358999999999999999999999999999999999999999888888888999999


Q ss_pred             HHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCC
Q 011747           82 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLP  161 (478)
Q Consensus        82 ~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~  161 (478)
                      |||+.+|+|++++.++..|+|++.||.++|+++++.|++++++|+.|++.|++++|.|+|++.+.||++++.+|++...+
T Consensus       198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~  277 (571)
T KOG1237|consen  198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS  277 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887666


Q ss_pred             CCCCCCCccccCCCCcccccccCCccchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHH
Q 011747          162 QGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGII  241 (478)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~  241 (478)
                      .   +.. .+ +..  ........++++++++|+|++..+.+.  +++...++|++|+.++|||+|.+++++|+|...++
T Consensus       278 ~---~~~-~~-~~~--~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~  348 (571)
T KOG1237|consen  278 L---DPE-EL-YYD--CTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTII  348 (571)
T ss_pred             C---cch-hc-ccc--ccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHHHHH
Confidence            5   221 11 110  011123345778899999998765433  44556789999999999999999999999999999


Q ss_pred             HHHhhhcchhHHHHHHhhhccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHH
Q 011747          242 SLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS  321 (478)
Q Consensus       242 f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~  321 (478)
                      ||+++.|+.|.++.|+.+|||++++++++|+++++++..+.++++.|+++++.+|+.+|.++++.++++++||++|++++
T Consensus       349 ~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~s  428 (571)
T KOG1237|consen  349 YSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLS  428 (571)
T ss_pred             HHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHH
Confidence            99999999999999999999999845999999999999999999999999999999999998877899999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhcc--CCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHH
Q 011747          322 ILSMIVAGLVERGRRASAHL--HPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASY  399 (478)
Q Consensus       322 ~ls~~~~~~~~~~~~~~~~~--~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~  399 (478)
                      .++|.+++++|.+|++.+.+  +..+++|++||+|||+++|+||+|.+++++||+|+|||++|||+.+++|+++.|+|++
T Consensus       429 i~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~  508 (571)
T KOG1237|consen  429 ILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY  508 (571)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999886654  2247899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCcccc-cCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011747          400 LSSLLITIVHGVTARHGHPDWLT-NDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ  462 (478)
Q Consensus       400 l~~~l~~~~~~~~~~~~~~~w~~-~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~  462 (478)
                      ++.++++++...+.+  ..+|++ +|+|++|+++|||+++++..++.+.|..++++|++++.++
T Consensus       509 lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~  570 (571)
T KOG1237|consen  509 LSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD  570 (571)
T ss_pred             HHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence            999999999887643  347999 9999999999999999999999999999999999988764

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-55  Score=450.96  Aligned_cols=363  Identities=19%  Similarity=0.230  Sum_probs=288.5

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .....++++|++|++|+|++|||+++++||||+++||    |||.+|++||+++|+|++++|++++++++++||+.+|++
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~  190 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL  190 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            4577899999999999999999999999999999998    599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccceeeeC--CCCCchhhH----------HHHHHHHHHhcccCCCCCCCCCCccccCCCCccccc
Q 011747          114 PTVLMIGAIILFLVGKKLYVLVE--PEGSIFSGI----------GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVL  181 (478)
Q Consensus       114 ~~v~m~~~liifl~g~~~~~~~~--p~g~pl~~~----------~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (478)
                      ++++|.+++++|++++|++....  |..+|.+.-          .+++.......               .         
T Consensus       191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------l---------  246 (498)
T COG3104         191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL---------------L---------  246 (498)
T ss_pred             HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH---------------H---------
Confidence            99999999999999999887653  333443210          01111100000               0         


Q ss_pred             ccCCccchhhhh-hh----hhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHH
Q 011747          182 SKLPLTHQFRFL-NK----AAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQ  256 (478)
Q Consensus       182 ~~~~~~~~~~~l-~~----a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~q  256 (478)
                          ..+.+++. ..    ..+.+..+.        ..|   .+.+ |||||++.++|++++.++||++|+|++|++++|
T Consensus       247 ----~~~~~~~~~~~~~i~~~~~~~~~~--------~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~  310 (498)
T COG3104         247 ----NQNTFSGVLLVISILIAIIYFAEA--------FRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLY  310 (498)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHH--------hcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence                00000110 00    001000000        011   1234 899999999999999999999999999999999


Q ss_pred             Hh-hhccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhh
Q 011747          257 AM-KMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR  335 (478)
Q Consensus       257 a~-~md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~  335 (478)
                      +. +.||+.. |+++|++|+|++||++|++++|+++++|+|+.++.    ++++++.||++|+++++++|++........
T Consensus       311 a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~~  385 (498)
T COG3104         311 ADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILAGLGFLILLLAGIWF  385 (498)
T ss_pred             HHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            95 6788866 79999999999999999999999999999987764    368999999999999999999887775432


Q ss_pred             hhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccC
Q 011747          336 RASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARH  415 (478)
Q Consensus       336 ~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~  415 (478)
                      .+     ..+.+|+||++++|+++++||+|++|+|+|+++++||++++|++||+|+++.++|+.+++.+.++....    
T Consensus       386 ~~-----~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~----  456 (498)
T COG3104         386 GG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVT----  456 (498)
T ss_pred             cC-----CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccccccc----
Confidence            11     135799999999999999999999999999999999999999999999999999999999887632210    


Q ss_pred             CCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 011747          416 GHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG  460 (478)
Q Consensus       416 ~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~  460 (478)
                            .+..+......+|+.++.+.++..++...++++.+|...
T Consensus       457 ------~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~  495 (498)
T COG3104         457 ------DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMK  495 (498)
T ss_pred             ------chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Confidence                  001122234679999999999999999999988876544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1.3e-46  Score=408.74  Aligned_cols=355  Identities=26%  Similarity=0.458  Sum_probs=298.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-------cc
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-------SW  107 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-------g~  107 (478)
                      +...++++|+++++|+|++|||++++++|||+++++   ++++++|+||||++|+|+++++++++++++++       ||
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence            455688999999999999999999999999987543   47999999999999999999999999998543       69


Q ss_pred             hhHhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCcc
Q 011747          108 VIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLT  187 (478)
Q Consensus       108 ~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (478)
                      +++|++++++|++++++|+.++|+|++.+|.++++.++.+++..+.+++......                        .
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------------~  216 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------------H  216 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------------c
Confidence            9999999999999999999999999888888999988889988887764321110                        0


Q ss_pred             chhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCC
Q 011747          188 HQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK  267 (478)
Q Consensus       188 ~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g  267 (478)
                      ...+|+|++...                  +.++++||+|++++++++++..++||++|+|++|++++|+.+||++++ +
T Consensus       217 ~~~~~ld~a~~~------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g  277 (654)
T TIGR00926       217 WPLHWLDYAKDK------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-G  277 (654)
T ss_pred             cchhHHHHhccc------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-C
Confidence            113677765421                  235678999999999999999999999999999999999999999887 8


Q ss_pred             cccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhh----------
Q 011747          268 FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRA----------  337 (478)
Q Consensus       268 ~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~----------  337 (478)
                      +++|++++|++|+++++++.|+++..++|.++|++.   ++++++|+++|++++++++++++++|.++..          
T Consensus       278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~  354 (654)
T TIGR00926       278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANE  354 (654)
T ss_pred             EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Confidence            999999999999999999999999999999987643   4799999999999999999998887543210          


Q ss_pred             ---------------------------------h----------------------------------------------
Q 011747          338 ---------------------------------S----------------------------------------------  338 (478)
Q Consensus       338 ---------------------------------~----------------------------------------------  338 (478)
                                                       .                                              
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (654)
T TIGR00926       355 IFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELE  434 (654)
T ss_pred             eEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeec
Confidence                                             0                                              


Q ss_pred             -------------hc----------------------------c------------------------------------
Q 011747          339 -------------AH----------------------------L------------------------------------  341 (478)
Q Consensus       339 -------------~~----------------------------~------------------------------------  341 (478)
                                   .+                            +                                    
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (654)
T TIGR00926       435 PKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANT  514 (654)
T ss_pred             CCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeee
Confidence                         00                            0                                    


Q ss_pred             ----------------C--C-------------------------CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 011747          342 ----------------H--P-------------------------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF  378 (478)
Q Consensus       342 ----------------~--g-------------------------~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a  378 (478)
                                      .  |                         ++++|++||+|||+++++||++.+++++||.|+||
T Consensus       515 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~  594 (654)
T TIGR00926       515 CDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQA  594 (654)
T ss_pred             cccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhC
Confidence                            0  0                         23478999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011747          379 PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY  455 (478)
Q Consensus       379 P~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~  455 (478)
                      |++||+..+++|.++.++|+.+...+...-...                 +....|.++|.++++..++|..+++.|
T Consensus       595 p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       595 PPNMKSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999987775422110                 134568889999999999999999866

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=4.3e-47  Score=390.55  Aligned_cols=339  Identities=36%  Similarity=0.583  Sum_probs=239.4

Q ss_pred             CchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHh
Q 011747           32 NSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGF  111 (478)
Q Consensus        32 ~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F  111 (478)
                      ++.+.+.+++||+++++|+|++|||+++++||||++++   ++++|++|+||||++|+|++++.++++|+++++||+++|
T Consensus        29 ~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f  105 (372)
T PF00854_consen   29 SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGF  105 (372)
T ss_dssp             -----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhh
Confidence            33567789999999999999999999999999999874   248999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccceeee-CCCCCchhh-HHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccch
Q 011747          112 GIPTVLMIGAIILFLVGKKLYVLV-EPEGSIFSG-IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQ  189 (478)
Q Consensus       112 ~i~~v~m~~~liifl~g~~~~~~~-~p~g~pl~~-~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (478)
                      ++|+++|++++++|+.++++|++. +|.++++.+ ...++..+.+++....+.   +.. ...+.....   ........
T Consensus       106 ~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~---~~~~~~~~  178 (372)
T PF00854_consen  106 GIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPK---GSS-WLDWALFQY---SERSIFGI  178 (372)
T ss_dssp             HHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-H---HHH-HHHHHHHHH---CCCCCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhccccc---chH-HHHHhhhhh---hhhhhhhh
Confidence            999999999999999999999888 778888887 444555555554433221   000 000000000   00000000


Q ss_pred             hhhhhhhhhhcccCCCCCCCCCCccccc-ccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCC-
Q 011747          190 FRFLNKAAMIVDNNELKPDGTPVNQWRL-CSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK-  267 (478)
Q Consensus       190 ~~~l~~a~~~~~~~~~~~~g~~~~~~~~-~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g-  267 (478)
                      ....+ +.......        ...|.. ++++++++.|.+.+.+|.+.+.++|+..+.|..+....|..+||+.++ + 
T Consensus       179 ~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~  248 (372)
T PF00854_consen  179 IVFIR-AAVIFFPE--------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GL  248 (372)
T ss_dssp             CCHHH-HHHHHCCC--------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS---
T ss_pred             hhhcc-chhhhhhh--------hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cc
Confidence            00111 11111100        011111 456788999999999999999999999999999999999999999888 6 


Q ss_pred             cccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcc
Q 011747          268 FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQV  347 (478)
Q Consensus       268 ~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~  347 (478)
                      +++|+++++++|++++++++|+++++++|++++    ++++++++|+++|++++.+++++++.+|.+|.....++  +..
T Consensus       249 ~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~--~~~  322 (372)
T PF00854_consen  249 FGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC--GKV  322 (372)
T ss_dssp             ----SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH------TT-
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc--CCC
Confidence            999999999999999999999999999999873    23589999999999999999999999998766443332  367


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhH
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF  396 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~  396 (478)
                      +.+|++|.|++++++|++++++|++.+++.||+++++.|||+|+...++
T Consensus       323 ~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  323 SPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             -THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             ChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence            7799999999999999999999999999999999999999999988654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=5.1e-44  Score=376.83  Aligned_cols=377  Identities=14%  Similarity=0.161  Sum_probs=270.6

Q ss_pred             HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHH
Q 011747           37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV  116 (478)
Q Consensus        37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v  116 (478)
                      ..+++++.++++|+|++|||.+++++|+|+++|+    +|+++|+++|+++|+|++++|++++++++++||+.+|.++++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            3466788899999999999999999999988765    699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccceeeeCC-CCCchhh--HHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747          117 LMIGAIILFLVGKKLYVLVEP-EGSIFSG--IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL  193 (478)
Q Consensus       117 ~m~~~liifl~g~~~~~~~~p-~g~pl~~--~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (478)
                      +|++++++++.++|.+.+..+ ..+|.++  ..+.+.....--..-.+.       ....         .+ .+.....+
T Consensus       177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---------~~-~~~~~~~~  239 (493)
T PRK15462        177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPA-------LITV---------LF-WKEWSVYA  239 (493)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH-------HHHH---------HH-HHHHHHHH
Confidence            999999999998887754311 1123211  000000000000000000       0000         00 00000000


Q ss_pred             -hhhh---hhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-hhccCCCCCc
Q 011747          194 -NKAA---MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKF  268 (478)
Q Consensus       194 -~~a~---~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~md~~~~~g~  268 (478)
                       -.+.   ..+..          ...  .+..+.+|+||+..+++++++.++||+.|+|++|+++++++ ++|++++ ||
T Consensus       240 ~~~~~~~~~~~~~----------~~~--~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~  306 (493)
T PRK15462        240 LIVATIIGLGVLA----------KIY--RKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GY  306 (493)
T ss_pred             HHHHHHHHHHHHH----------HHH--HhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ce
Confidence             0000   00000          000  01123478999999999999999999999999999999995 8999998 99


Q ss_pred             ccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcch
Q 011747          269 QIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVS  348 (478)
Q Consensus       269 ~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s  348 (478)
                      ++|++|+|++||++|+++.|++.++|.++.+|    +++++.+.|+++|++++++||+++.+.....    .++  ..+|
T Consensus       307 ~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~--~~~s  376 (493)
T PRK15462        307 TVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGFCILTLSARWS----AMY--GHSS  376 (493)
T ss_pred             eeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC--CCcC
Confidence            99999999999999999999999998655432    2357999999999999999999988765421    112  2599


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHh-hHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747          349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSF-GFASYLSSLLITIVHGVTARHGHPDWLTNDIDA  427 (478)
Q Consensus       349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~-a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  427 (478)
                      ++|++..|+++|+||++.+|+|++++++.||++++|++||+|+++. ++|+.+++.+.+++...+.... +. ..+++  
T Consensus       377 ~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~--  452 (493)
T PRK15462        377 LPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAS-GA-INYSI--  452 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc-cc-ccchh--
Confidence            9999999999999999999999999999999999999999999965 8999999999987753210000 00 00011  


Q ss_pred             cchHHHHHHHHHHHHHH-HH-HHHHhhhccccccCC
Q 011747          428 GRLDYFYFLIAGLGGLN-IV-YFLYCARRYRYKSGI  461 (478)
Q Consensus       428 ~~~~~~f~~la~l~~v~-~v-if~~~~~~~~~~~~~  461 (478)
                      ..+..+|..++.++++. ++ .+.-+....|.|+|.
T Consensus       453 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
T PRK15462        453 NAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA  488 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            13456888888777665 43 444455556666665

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.2e-39  Score=346.56  Aligned_cols=372  Identities=12%  Similarity=0.121  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHH
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL  117 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~  117 (478)
                      .++++++++++|+|++|||.+++++|+|+++++    +|+++|+++|+++|+|+++++.+++++.+++||+++|.+++++
T Consensus       107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            466889999999999999999999999987653    5788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccceeee--CCCCCchhh--HHHHH------HHHHHhcccCCCCCCCCCCccccCCCCcccccccCCcc
Q 011747          118 MIGAIILFLVGKKLYVLV--EPEGSIFSG--IGQVL------VAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLT  187 (478)
Q Consensus       118 m~~~liifl~g~~~~~~~--~p~g~pl~~--~~~vl------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (478)
                      +.++++.++.+++++++.  +|++++...  .....      ...... .   ..   ..        ...         
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-~---~~---~~--------~~~---------  238 (489)
T PRK10207        183 LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-L---MH---NV--------EVA---------  238 (489)
T ss_pred             HHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-H---Hh---hh--------hHH---------
Confidence            999999998888777553  233333311  11000      000000 0   00   00        000         


Q ss_pred             chhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-hhccCCCC
Q 011747          188 HQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGP  266 (478)
Q Consensus       188 ~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~md~~~~~  266 (478)
                       . ..+..+.+...       .  ...++..+.+ ..++++.+..+++++..++||+.|+|+.+++++|+. ++|++.. 
T Consensus       239 -~-~~~~~~~~i~~-------~--~f~~~~~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-  305 (489)
T PRK10207        239 -N-LVLIVLSIVVT-------I--IFFREAFKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-  305 (489)
T ss_pred             -H-HHHHHHHHHHH-------H--HHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-
Confidence             0 00000000000       0  0000001112 345777888899999999999999999999999996 6888777 


Q ss_pred             CcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc
Q 011747          267 KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ  346 (478)
Q Consensus       267 g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~  346 (478)
                      |+++|++++|++||++++++.|+.++++ +.++|+   +.++++++|+++|+++++++++++++.+...   ...+  ..
T Consensus       306 G~~i~~~~~~~~n~~~iii~~pl~~~l~-~rl~~r---~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~--~~  376 (489)
T PRK10207        306 GFSINPVSFQALNPFWVVVASPILAGIY-THLGSK---GKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ--GL  376 (489)
T ss_pred             ceEECHHHHHhHhHHHHHHHHHHHHHHH-HHHhhC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC--Cc
Confidence            8999999999999999999999998755 444433   3468999999999999999998876654311   1111  25


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCC
Q 011747          347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDID  426 (478)
Q Consensus       347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln  426 (478)
                      +|+||+++.|+++|+||++++|+++|++++.+|++++|++||+|+++.++|+.+|+.+++.++....  ..++..    .
T Consensus       377 ~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~--~~~~~~----~  450 (489)
T PRK10207        377 TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN--ITDPLE----T  450 (489)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchh----h
Confidence            7899999999999999999999999999999999999999999999999999999999987753210  000000    0


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccc
Q 011747          427 AGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLE  465 (478)
Q Consensus       427 ~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~  465 (478)
                      ++.+.++|..+++.+++.+++++++.++++|..+.+|+|
T Consensus       451 ~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  489 (489)
T PRK10207        451 LPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPESH  489 (489)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            123578999999999999999999999999987776654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=5.3e-38  Score=333.15  Aligned_cols=361  Identities=13%  Similarity=0.119  Sum_probs=270.2

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT  115 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~  115 (478)
                      .+.+++++.++++|+|+++||.+++++|+++++++   ++|+++|+++|+++|+|+++++.+++++++++||+++|.+++
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            45677888999999999999999999999987652   258889999999999999999999999999899999999999


Q ss_pred             HHHHHHHHHHHhcccceeeeCCCCCchhhH-----H--HH----HHHHHHhcccCCCCCCCCCCccccCCCCcccccccC
Q 011747          116 VLMIGAIILFLVGKKLYVLVEPEGSIFSGI-----G--QV----LVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKL  184 (478)
Q Consensus       116 v~m~~~liifl~g~~~~~~~~p~g~pl~~~-----~--~v----l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (478)
                      +.+++++++++..++.+++.++++++.++.     .  ..    +....+.... ...    .       . ..      
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~-------~-~~------  239 (475)
T TIGR00924       179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHH----V-------V-IA------  239 (475)
T ss_pred             HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-Hhc----c-------H-HH------
Confidence            999999999988888776554433332210     0  00    0000110000 000    0       0 00      


Q ss_pred             CccchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHH-hhhccC
Q 011747          185 PLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA-MKMNRH  263 (478)
Q Consensus       185 ~~~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa-~~md~~  263 (478)
                        +....-...+...+.....      .++    +.++ +|+++...+++++++.++||++|+|+.|++.+|+ +++|++
T Consensus       240 --~~~~~~~~~~~~~~~~~~~------~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~  306 (475)
T TIGR00924       240 --NILLMTVTLAVIIFFFRLA------FKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHE  306 (475)
T ss_pred             --HHHHHHHHHHHHHHHHHHH------Hhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence              0000000011111100000      000    1122 3456667799999999999999999999998877 579999


Q ss_pred             CCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 011747          264 LGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP  343 (478)
Q Consensus       264 ~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g  343 (478)
                      ++ ++++|+++++++|++++++++|+++++|.+ ++|++   .++++..|+++|+++.+++++.++++...    ..  .
T Consensus       307 ~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~-l~~~~---~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~--~  375 (475)
T TIGR00924       307 ML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTR-LGRKG---KDPTTPLKFTLGMLFCGASFLTFAASIWF----AD--A  375 (475)
T ss_pred             cc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCC---CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cC--C
Confidence            87 899999999999999999999999976643 33332   24688999999999999999988876321    11  1


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccccc
Q 011747          344 MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN  423 (478)
Q Consensus       344 ~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~  423 (478)
                      ..++|+||++++|+++|+||++++|+++++++++||+++||+++|+|.+..++|+.+++.+........           
T Consensus       376 ~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-----------  444 (475)
T TIGR00924       376 GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-----------  444 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence            236899999999999999999999999999999999999999999999999999999999987654321           


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747          424 DIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK  458 (478)
Q Consensus       424 ~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~  458 (478)
                           ....+|..+++++++.+++++.+.++.+|.
T Consensus       445 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  474 (475)
T TIGR00924       445 -----GVTGVFGKIGLVTLLVGVVMALMVPWLNRM  474 (475)
T ss_pred             -----chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                 134688889999999999999999888763

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=2.4e-37  Score=330.12  Aligned_cols=369  Identities=13%  Similarity=0.164  Sum_probs=273.7

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT  115 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~  115 (478)
                      ...+++++.++++|.|+++|+.+++++|+|+++++    +++++++++|+++|+|+++++.+.+++.+++||+++|.+++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            45577888999999999999999999999986643    57789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccceeee--CCCCCchhhH------HHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCcc
Q 011747          116 VLMIGAIILFLVGKKLYVLV--EPEGSIFSGI------GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLT  187 (478)
Q Consensus       116 v~m~~~liifl~g~~~~~~~--~p~g~pl~~~------~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (478)
                      +.++++++.++..++.+++.  +|+++|....      ..+..........             +.+...        .+
T Consensus       188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--------~~  246 (500)
T PRK09584        188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWL-------------LHNQEI--------AR  246 (500)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHH-------------HhcchH--------HH
Confidence            99999999888777766543  2333333211      1111111110000             000000        00


Q ss_pred             chhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-hhccCCCC
Q 011747          188 HQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGP  266 (478)
Q Consensus       188 ~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~md~~~~~  266 (478)
                      ....+.........            ....+. .+.+|+++.+..+++++..++||+.|.|+.+.++.|+. ++|++.. 
T Consensus       247 ~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-  312 (500)
T PRK09584        247 MALGVVALGIVVIF------------GKEAFA-MKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-  312 (500)
T ss_pred             HHHHHHHHHHHHHH------------HHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-
Confidence            00000000000000            000011 12356778888888999999999999999999999995 5788877 


Q ss_pred             CcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc
Q 011747          267 KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ  346 (478)
Q Consensus       267 g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~  346 (478)
                      |+.+|++++|++|++++++++|+++++|.    |..+   ++++.+|+++|+++.+++|+++++....    ..+  ...
T Consensus       313 g~~i~~~~~~s~n~i~iil~~p~~~~~~~----~l~~---r~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--~~~  379 (500)
T PRK09584        313 GIAVEPEQYQALNPFWIMIGSPILAAIYN----KMGD---RLPMPHKFAIGMVLCSGAFLVLPLGAKF----AND--AGI  379 (500)
T ss_pred             ceEECHHHHHHHhHHHHHHHHHHHHHHHH----HhCc---CCCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--CCc
Confidence            89999999999999999999999998763    3322   2468899999999999999998776532    111  246


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCC-
Q 011747          347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDI-  425 (478)
Q Consensus       347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~l-  425 (478)
                      +|++|++++|+++|+||++++|+++++++++||+++||++||+|+++.++|+.+++.+.+.+....       -..+.. 
T Consensus       380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~  452 (500)
T PRK09584        380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-------NVTDPLM  452 (500)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchh
Confidence            999999999999999999999999999999999999999999999999999999999987654211       000110 


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCc
Q 011747          426 DAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQS  463 (478)
Q Consensus       426 n~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~  463 (478)
                      ..+.+..+|..+++++++.++++++++++.+|..+.++
T Consensus       453 ~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~  490 (500)
T PRK09584        453 SLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS  490 (500)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            11225678899999999999999999999998877655

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.32  E-value=3e-10  Score=118.34  Aligned_cols=305  Identities=11%  Similarity=-0.040  Sum_probs=173.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.+++...+.+++.|...+...+...|.++++      ++.++..+++++.++|..+++.+.+++.+..||++.|.+.
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            3455556666667777877788888888877643      4788889999999999999999988887778999999988


Q ss_pred             HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747          115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN  194 (478)
Q Consensus       115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (478)
                      ++..+++.+..+..+    +.+|...+                   +.   ..    .    .             +..+
T Consensus       183 ~~~~~~~~~~~~~l~----~~~~~~~~-------------------~~---~~----~----~-------------~~~~  215 (417)
T PRK10489        183 AAGTFITLLPLLRLP----ALPPPPQP-------------------RE---HP----L----R-------------SLLA  215 (417)
T ss_pred             HHHHHHHHHHHHhCC----CCCCCCcc-------------------cc---cc----h----H-------------HHHH
Confidence            877776655443211    11110000                   00   00    0    0             0000


Q ss_pred             hhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc-
Q 011747          195 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG-  273 (478)
Q Consensus       195 ~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~-  273 (478)
                                         .+     ..+-..+.+..   +++.... +.......+.+   ...+....+    .++. 
T Consensus       216 -------------------~~-----~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~---p~~~~~~~g----~~~~~  260 (417)
T PRK10489        216 -------------------GF-----RFLLASPVVGG---IALLGGL-LTMASAVRVLY---PALADEVWQ----MGAAQ  260 (417)
T ss_pred             -------------------HH-----HHHHcChHHHH---HHHHHHH-HHHHHhHHHhh---HHHHHhccC----CChhH
Confidence                               00     00000111111   1111111 11111111111   111221121    2222 


Q ss_pred             --ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747          274 --TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW  351 (478)
Q Consensus       274 --~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w  351 (478)
                        ++.....+..++...+..+     +.++.      ++.+-+.+++++.+++++.....               -+.+.
T Consensus       261 ~g~~~~~~~~g~~ig~~~~~~-----l~~~~------~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~  314 (417)
T PRK10489        261 IGLLYAAVPLGAALGALTSGW-----LAHSA------RPGLLMLLSTLGSFLAVGLFGLM---------------PMWIL  314 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-----hhhcc------CcchHHHHHHHHHHHHHHHHHcc---------------chHHH
Confidence              2333333444434333332     22211      12223556666666665433211               13344


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchH
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD  431 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~  431 (478)
                      .+...++.+++.....+....+..+..|++.||..+|++.....+|..+|+.+.+.+.+..             +   ..
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-------------g---~~  378 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-------------T---PV  378 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-------------c---hh
Confidence            4556778888888888888888999999999999999999988889999888887665321             1   12


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccCCCcccccCc
Q 011747          432 YFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND  469 (478)
Q Consensus       432 ~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~  469 (478)
                      ..++..+++.++..++.....++.|+++.|+.++|..|
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (417)
T PRK10489        379 ASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD  416 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence            34555666666666666677788888888888777766

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.12  E-value=3.1e-09  Score=110.46  Aligned_cols=261  Identities=10%  Similarity=-0.017  Sum_probs=153.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.+++.|.+.|...+.+.|.++++      +|.+++++.+...|+|..+++.+.+++. ++||+..|.+.
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~  170 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG  170 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            4566777788888999989999999998888653      5889999999999999999999999888 68999999988


Q ss_pred             HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747          115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN  194 (478)
Q Consensus       115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (478)
                      ++..++..++.....+     +++.++.                  ..   +.    .               +  .+. 
T Consensus       171 ~~~~~~~~i~~~~~~~-----~~~~~~~------------------~~---~~----~---------------~--~~~-  202 (400)
T PRK11646        171 AVLFVLAAAFNAWLLP-----AYKLSTV------------------RT---PV----R---------------E--GMT-  202 (400)
T ss_pred             HHHHHHHHHHHHHhCC-----ccccccc------------------ch---hh----H---------------H--HHH-
Confidence            7776665544332211     0000000                  00   00    0               0  000 


Q ss_pred             hhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCcc
Q 011747          195 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT  274 (478)
Q Consensus       195 ~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~  274 (478)
                                                +-..+++ .+.   +.+....++..+.|..+.   ....+....+  ...-.++
T Consensus       203 --------------------------~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~---~p~~~~~~~~--~~~~~g~  247 (400)
T PRK11646        203 --------------------------RVLRDKR-FVT---YVLTLTGYYMLAVQVMLM---LPIMVNDIAG--SPSAVKW  247 (400)
T ss_pred             --------------------------HHHcCch-HHH---HHHHHHHHHHHHHHHHHh---hhhhHHhhcC--CchHHHH
Confidence                                      0001111 111   111122233333332211   1111211111  1011123


Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP  354 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~  354 (478)
                      +..++.+..+.+.-...+    +..|+      .+..+++.+|+++.+++++..+...               +.++.+.
T Consensus       248 l~~~~~~~~~~~~~~~~~----~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~  302 (400)
T PRK11646        248 MYAIEACLSLTLLYPIAR----WSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS---------------NLQQLFT  302 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHh------cchhHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHH
Confidence            333344333322222222    22221      1233456777777777765443221               2333444


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      ..++.++++....|.....+.+.+|++.+|..+|++.+..++|..+|+.+.+...+
T Consensus       303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        303 LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            55778899999999999999999999999999999999999999999888877654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.12  E-value=1.6e-08  Score=104.41  Aligned_cols=84  Identities=10%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++-.+.+++.|.+-|...+++.|.++++      +|.++++++..+.++|..+++.+.+.+.+.+||++.|.+.
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~  169 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI  169 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence            4566677777888888888888889999988754      4888999999999999999998888888888999999998


Q ss_pred             HHHHHHHHHH
Q 011747          115 TVLMIGAIIL  124 (478)
Q Consensus       115 ~v~m~~~lii  124 (478)
                      ++..++..+.
T Consensus       170 ~~~~~l~~~~  179 (390)
T PRK03545        170 GGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHH
Confidence            7766555444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.08  E-value=2.4e-08  Score=101.16  Aligned_cols=86  Identities=21%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|..-+...+++.|.++++      +|.++++++..+.++|.++++.+.+++.++.||++.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            5677788888999999999999999999988754      5889999999999999999999888887889999999988


Q ss_pred             HHHHHHHHHHHH
Q 011747          115 TVLMIGAIILFL  126 (478)
Q Consensus       115 ~v~m~~~liifl  126 (478)
                      ++..++..+..+
T Consensus       155 ~~~~~~~~~~~~  166 (399)
T TIGR00893       155 GVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHhh
Confidence            776666555443

>PRK10054 putative transporter; Provisional

Probab=99.05  E-value=8e-09  Score=107.23  Aligned_cols=83  Identities=11%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT  115 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~  115 (478)
                      .+.++++..+.+.+.+.+.|...+...|.++++      +|.+++++.|...|+|..+++.+.+++.+ .||+..|.+++
T Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            334444444556666677778888888888644      58889999999999999999988888764 79999999988


Q ss_pred             HHHHHHHHHH
Q 011747          116 VLMIGAIILF  125 (478)
Q Consensus       116 v~m~~~liif  125 (478)
                      +..+++++..
T Consensus       169 ~~~~i~~i~~  178 (395)
T PRK10054        169 ICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHH
Confidence            8777765443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.02  E-value=5.9e-08  Score=100.66  Aligned_cols=85  Identities=12%  Similarity=0.022  Sum_probs=66.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.+++...+.+++.|..-+...+...|.++++      ++.++.++.+.+.++|..+++.+.+++.+..||+..|.+.
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            3455666677778888887788888888888654      3667788888888899999998888887888999999987


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..+++.+..
T Consensus       174 ~~~~~~~~~~~  184 (406)
T PRK15402        174 AALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHH
Confidence            77776665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.01  E-value=3.1e-08  Score=102.26  Aligned_cols=84  Identities=13%  Similarity=-0.018  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.+++.+. -|...+...|+++++      +|.++.++++.+.++|.++++.+.+++.+..||+..|.+.
T Consensus       106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  178 (408)
T PRK09874        106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT  178 (408)
T ss_pred             hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            455666666777777554 466667778877543      4778889999999999999999988887778999999988


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..+++.+..
T Consensus       179 ~~~~~~~~~~~  189 (408)
T PRK09874        179 ASVLFLCFLVT  189 (408)
T ss_pred             HHHHHHHHHHH
Confidence            87766665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.00  E-value=6.3e-08  Score=99.84  Aligned_cols=279  Identities=12%  Similarity=0.080  Sum_probs=162.4

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.++++.++.+.+.+..-|...++..+ ++       +++.+.+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus        92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~  163 (382)
T TIGR00902        92 HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI  163 (382)
T ss_pred             hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            346666666666777777777776666532 22       1466779999999999999999999999888999999988


Q ss_pred             HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747          114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL  193 (478)
Q Consensus       114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (478)
                      .++..++.++.+.. ++   +.+|+++.  +                ..   ..     +             .. ..+ 
T Consensus       164 ~~~~~~~~~~~~~~-~~---~~~~~~~~--~----------------~~---~~-----~-------------~~-~~~-  198 (382)
T TIGR00902       164 LTAGLAFMLIGFLI-KP---TIPPKDAI--P----------------ED---ES-----Q-------------GD-SAF-  198 (382)
T ss_pred             HHHHHHHHHHHHHc-CC---CCCCCccc--c----------------cc---cc-----c-------------cc-hhH-
Confidence            66553333332221 11   00111000  0                00   00     0             00 000 


Q ss_pred             hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747          194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG  273 (478)
Q Consensus       194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~  273 (478)
                                                 .++-..|+   ...+.+...+++..+.+..+....+-.  |  .+    .++.
T Consensus       199 ---------------------------~~~l~~~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~--~--~g----~s~~  240 (382)
T TIGR00902       199 ---------------------------IALLKNPM---NLRFLAAVCLIQGAHAAYYGFSAIYWQ--A--AG----ISAS  240 (382)
T ss_pred             ---------------------------HHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--H--CC----CCHh
Confidence                                       00000122   222333344455555555554332221  2  22    3333


Q ss_pred             c---cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHH
Q 011747          274 T---VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVF  350 (478)
Q Consensus       274 ~---~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~  350 (478)
                      +   +..++.+..++..++.++    +.+|+       ++.+-+.+|+++.++.++..+..               .+.+
T Consensus       241 ~~g~l~~~~~~~~i~~~~~~~~----l~~r~-------g~~~~l~~~~~~~~~~~~~~~~~---------------~~~~  294 (382)
T TIGR00902       241 ATGLLWGIGVLAEIIIFAFSNK----LFQNC-------SARDLLLISAIACVGRWAIIGAI---------------EAFP  294 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHH----HHhhC-------CHHHHHHHHHHHHHHHHHHHHhH---------------hhHH
Confidence            3   333344444444333332    23333       34445677888888877655432               2445


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcc
Q 011747          351 WLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR  429 (478)
Q Consensus       351 wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~  429 (478)
                      +++..-+++++++.+..+..+.++.++ |++.++..||++. ++.++|..+++.+++...+.             .  + 
T Consensus       295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------------~--g-  357 (382)
T TIGR00902       295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------------L--G-  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------c--c-
Confidence            555556999999999999999999988 9999999999986 56788888888888766542             1  1 


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 011747          430 LDYFYFLIAGLGGLNIVY  447 (478)
Q Consensus       430 ~~~~f~~la~l~~v~~vi  447 (478)
                       ...|+..+++++++.++
T Consensus       358 -~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       358 -AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             23567777777755433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.00  E-value=3.5e-08  Score=99.45  Aligned_cols=268  Identities=10%  Similarity=-0.003  Sum_probs=156.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.+++.|...|...++..|.++++      +|.+.++++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            5677888888999999999999999999998754      5899999999999999999999988888888999999988


Q ss_pred             HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747          115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN  194 (478)
Q Consensus       115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (478)
                      ++..+++.+..+..+.    +++..++..                 +.    .         +          +   ...
T Consensus       165 ~~~~~~~~~~~~~~~~----~~~~~~~~~-----------------~~----~---------~----------~---~~~  197 (365)
T TIGR00900       165 AVGFAISALLIVSVRI----PELAASEIQ-----------------AL----S---------N----------A---VLR  197 (365)
T ss_pred             HHHHHHHHHHHHhccc----ccCCCcccc-----------------cc----c---------h----------h---HHH
Confidence            8777666554433211    100000000                 00    0         0          0   000


Q ss_pred             hhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCcc
Q 011747          195 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT  274 (478)
Q Consensus       195 ~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~  274 (478)
                      ..                       .+...+.++-..+..+.+...+++..+......+.  ........+    .++.+
T Consensus       198 ~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~  248 (365)
T TIGR00900       198 DT-----------------------REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALF--PYVQSKYLG----RGSTH  248 (365)
T ss_pred             HH-----------------------HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHhC----CchHH
Confidence            00                       00000011101122222222233333222221111  111111111    22222


Q ss_pred             ---cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747          275 ---VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW  351 (478)
Q Consensus       275 ---~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w  351 (478)
                         +.....+..++..++..+    ..+|.+       ..+-+.+++++.+++++......             + +.++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~  303 (365)
T TIGR00900       249 YGWVLAAFGLGALLGALLLGL----LGRYFK-------RMALMTGAIFVIGLAILVVGLTP-------------P-NFPL  303 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHhc-------hhHHHHHHHHHHHHHHHHHHhhc-------------h-hHHH
Confidence               333333333333333332    222321       12233445555555554433221             1 3555


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .+...++.+++.-...+...+...+..|++.|+..+|++.....+|..+++.+.+...
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677899999999999999999999999999999999999999999999988876554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.98  E-value=1.1e-07  Score=98.30  Aligned_cols=84  Identities=15%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.+.++..+.++|.|...|...+...|.++++      +|.+++++++.+.++|.++++.+...+.+..+|+..|.+.
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  175 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG  175 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence            4566677778889999999999999999998654      4889999999999999999998887888888999999987


Q ss_pred             HHHHHHHHHH
Q 011747          115 TVLMIGAIIL  124 (478)
Q Consensus       115 ~v~m~~~lii  124 (478)
                      ++..++..++
T Consensus       176 ~~~~~~~~~~  185 (406)
T PRK11551        176 GVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHH
Confidence            7665555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.96  E-value=1.5e-07  Score=98.29  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhcee---eeEEeeccchhHh
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL---VYIQDSVSWVIGF  111 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~---~~i~~~~g~~~~F  111 (478)
                      +.+.++++..+.++|.|..-+...++++|.++++      +|..+.++++.+.++|.++++.+.   ....+..||++.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            3457788889999999999999999999988755      478899999999999999999887   6666778999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011747          112 GIPTVLMIGAIILF  125 (478)
Q Consensus       112 ~i~~v~m~~~liif  125 (478)
                      .+.++..++.++..
T Consensus       200 ~~~~~~~~~~~~~~  213 (481)
T TIGR00879       200 GLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99776666555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.95  E-value=2.8e-07  Score=95.15  Aligned_cols=78  Identities=19%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT  115 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~  115 (478)
                      ...++++-.+.++|.|.+-++..+...|.++++      +|.++.+++..+.++|..+++.+.+++.+..||+..|.+++
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  185 (399)
T PRK05122        112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM  185 (399)
T ss_pred             HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            445666667888999999999988888888654      37778889899999999999888888877889999888766


Q ss_pred             HHHH
Q 011747          116 VLMI  119 (478)
Q Consensus       116 v~m~  119 (478)
                      +..+
T Consensus       186 ~~~~  189 (399)
T PRK05122        186 LLAL  189 (399)
T ss_pred             HHHH
Confidence            5443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.95  E-value=6.2e-08  Score=96.69  Aligned_cols=264  Identities=17%  Similarity=0.179  Sum_probs=173.1

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.++++..+.+++.|...+...++..|.++++      +|.+.+++.+.+.++|..+++.+.+.+.+..+|+..|.+
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  158 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI  158 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            35667778888899999999999999999999764      488899999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747          114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL  193 (478)
Q Consensus       114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (478)
                      .++..+++.+......             ++...                                              
T Consensus       159 ~~~~~~~~~~~~~~~~-------------~~~~~----------------------------------------------  179 (352)
T cd06174         159 LAILGLLLALLLLFLL-------------RLLLL----------------------------------------------  179 (352)
T ss_pred             HHHHHHHHHHHHHHHH-------------HHHHH----------------------------------------------
Confidence            8887777766654321             00000                                              


Q ss_pred             hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747          194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG  273 (478)
Q Consensus       194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~  273 (478)
                                                               +.+....++..+....+.......+. .+..   +...+
T Consensus       180 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~  214 (352)
T cd06174         180 -----------------------------------------LALAFFLLSFGYYGLLTYLPLYLQEV-LGLS---AAEAG  214 (352)
T ss_pred             -----------------------------------------HHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC---HHHHH
Confidence                                                     00000000110000000000000000 0110   01123


Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchh-hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQ-RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~-ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++.....+..++..++..++    .+|.++       .+ -+.++.++..++++.....               .+.++.
T Consensus       215 ~~~~~~~~~~~i~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~  268 (352)
T cd06174         215 LLLSLFGLGGILGALLGGLL----SDRLGR-------RRLLLLIGLLLAALGLLLLALA---------------PSLALL  268 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHh-------hhHHHHHHHHHHHHHHHHHHHh---------------ccHHHH
Confidence            34455555555555555543    344432       12 4667777777776655432               125667


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY  432 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  432 (478)
                      +..+++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+...+..      +          ...
T Consensus       269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~----------~~~  332 (352)
T cd06174         269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G----------YGG  332 (352)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----------cch
Confidence            788999999999999999999999999999999999999999999999998887664310      1          234


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011747          433 FYFLIAGLGGLNIVYFL  449 (478)
Q Consensus       433 ~f~~la~l~~v~~vif~  449 (478)
                      .|...+++.++..++++
T Consensus       333 ~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         333 VFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHhe
Confidence            56666666666665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.93  E-value=1.1e-08  Score=112.36  Aligned_cols=252  Identities=9%  Similarity=-0.097  Sum_probs=183.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chh----
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVI----  109 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~----  109 (478)
                      +.+...++++.++++.+|.+++.+++.++|.+..+   ++++++.+++|||..+.+.+.+. ++..+..... +..    
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVGCFGC  156 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccc
Confidence            45666778899999999999999999999998765   35677899999999999998765 4444444333 332    


Q ss_pred             ---HhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCc
Q 011747          110 ---GFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPL  186 (478)
Q Consensus       110 ---~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (478)
                         -++..++.+++.++.++.+...++..++.+.+-..+.+++.......+.                            
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~----------------------------  208 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK----------------------------  208 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH----------------------------
Confidence               2337788888888888888776666555444333344443332221100                            


Q ss_pred             cchhhhhhhhhhhcccCCCCCCCCCCcccccc--cchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCC
Q 011747          187 THQFRFLNKAAMIVDNNELKPDGTPVNQWRLC--SIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL  264 (478)
Q Consensus       187 ~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~--~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~  264 (478)
                              +.      ..  ........|-.+  ...++++++...+++.++...+.+|+.+.|....++.|..++++..
T Consensus       209 --------~~------~~--~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~  272 (654)
T TIGR00926       209 --------RF------ST--RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD  272 (654)
T ss_pred             --------hh------cc--CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence                    00      00  000000122222  2233567899999999999999999999999999999999999987


Q ss_pred             CCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 011747          265 GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS  338 (478)
Q Consensus       265 ~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~  338 (478)
                      + .+...+...+.++++-.++++|+...+.+|+.+++.+   .-.+++++.-+.+...++++..++++..+...
T Consensus       273 ~-~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~---~~~~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       273 G-DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAK---CGTRFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             C-ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHh---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6 5556667788999999999999999999999998843   44678899999999999999999998876543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.92  E-value=7.2e-08  Score=113.26  Aligned_cols=281  Identities=9%  Similarity=-0.025  Sum_probs=160.0

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.++++.++.++|.+++.|...+++.|.++++      ++..+.+++.++.++|.++++.+++++....||+..|.+
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            35778888999999999999999999999999865      488899999999999999999999999888999999844


Q ss_pred             HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747          114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL  193 (478)
Q Consensus       114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (478)
                      .++..++++++.+.    ....++......                 ..    .                       +..
T Consensus       180 ~~~~~~~~~~~~~~----~~~~~~~~~~~~-----------------~~----~-----------------------~~~  211 (1140)
T PRK06814        180 LMGIAVLGWLASLF----IPKTGNAAPDLK-----------------ID----R-----------------------NII  211 (1140)
T ss_pred             HHHHHHHHHHHHhh----CCCCCCCCCCCe-----------------ec----c-----------------------chH
Confidence            44433333332221    111111100000                 00    0                       000


Q ss_pred             hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCC-
Q 011747          194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP-  272 (478)
Q Consensus       194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~-  272 (478)
                      ....                       +.....++-..+..+.+....++.++....+.+..+.   ....+    .++ 
T Consensus       212 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~g----~~~~  261 (1140)
T PRK06814        212 RSTI-----------------------TLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA---KETLG----GDEN  261 (1140)
T ss_pred             HHHH-----------------------HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHcC----CchH
Confidence            0000                       0000011101122222222333333322222222222   11122    222 


Q ss_pred             --cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhh-hhhhcc---CC-CC
Q 011747          273 --GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR-RASAHL---HP-MS  345 (478)
Q Consensus       273 --~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~-~~~~~~---~g-~~  345 (478)
                        +++.+...+..++...+..++.    +++       ...+.+.+|.++.+++.+..++..... ......   .+ ..
T Consensus       262 ~~g~~~~~~~~g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  330 (1140)
T PRK06814        262 VATLFLAVFSVGVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS  330 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence              3344445555555554444321    221       112335555555555444333220000 000000   00 00


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          346 QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       346 ~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ..+.|+++..+++.|++..+..+...+++.+.+|++.+|.++|++.+...+|..+++.+.+.+.
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            1355677788899999999999999999999999999999999999999999999888877664

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.91  E-value=1.7e-07  Score=96.51  Aligned_cols=262  Identities=10%  Similarity=0.050  Sum_probs=147.1

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.+++...+.+++.+...|...+...|. .+       ++.+.+++..+..++|..+++.+.+++.+++||+..|.+
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            3466666667777888888888777776654 21       256677778888899999999999999888999999988


Q ss_pred             HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747          114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL  193 (478)
Q Consensus       114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (478)
                      .++..++..+.... ++   +.+|++++                   .+   ..     +    +      . .  .++ 
T Consensus       164 ~~~~~~~~~~~~~~-~~---~~~~~~~~-------------------~~---~~-----~----~------~-~--~~~-  198 (382)
T PRK11128        164 LTAGVASMLLGQLL-RP---TIMPQGES-------------------RQ---QE-----S----A------G-W--PAW-  198 (382)
T ss_pred             HHHHHHHHHHHHHc-cC---CCCCcccc-------------------cc---cc-----c----c------c-c--chH-
Confidence            77655554433221 11   11111100                   00   00     0    0      0 0  000 


Q ss_pred             hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747          194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG  273 (478)
Q Consensus       194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~  273 (478)
                                                 .+.-..|+   +..+.+...+++..+.+..+.+..+..  |.+..   +-..+
T Consensus       199 ---------------------------~~i~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~g~s---~~~~g  243 (382)
T PRK11128        199 ---------------------------KALLKEPT---VWRFLLCVSLLQGSHAAYYGFSAIYWQ--AAGYS---ASTIG  243 (382)
T ss_pred             ---------------------------HHHHcChh---HHHHHHHHHHHHHHhHhHHHHHHHHHH--HCCCC---HhHHH
Confidence                                       00001112   222223233333443333333222222  21111   01113


Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      .+..++.+..++...+.+++    .+|+       +..+.+.+++++.+++++..+..               -+.++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~  297 (382)
T PRK11128        244 YLWSLGVVAEVLIFAFSNRL----FRRW-------SARDLLLLSAICGVVRWGLMGST---------------TALPWLI  297 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHC-------CHHHHHHHHHHHHHHHHHHHHhh---------------hhHHHHH
Confidence            34444544444444444433    3443       33344667777777766544322               2455667


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhc
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~-l~~a~g~~l~~~l~~~~~~  410 (478)
                      ..-++.++++.+..+....++.++.|.+ ++..+|+.. +..++|..+|+.+++...+
T Consensus       298 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        298 VIQILHCGTFTVCHLAAMRYIAARPGSE-VIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999999998885555 588899876 5567777777777766553

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.90  E-value=3.2e-08  Score=99.35  Aligned_cols=85  Identities=24%  Similarity=0.326  Sum_probs=76.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|...+...++..|.++++      +|.+.+++.+.+.++|..+++.+.+++.++.||+..|.+.
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~  157 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS  157 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence            3447888889999999999999999999999875      4899999999999999999999999998889999999999


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..+++.++.
T Consensus       158 ~~~~~~~~il~  168 (352)
T PF07690_consen  158 AILSLIAAILF  168 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cchhhhhhhhH
Confidence            99888887753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.90  E-value=2.9e-07  Score=98.98  Aligned_cols=268  Identities=15%  Similarity=0.086  Sum_probs=163.8

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.+++...++++|++++.|.-++++.+..+++      +..++.++.-...|+.-++||.+.|.+-...|....|.+
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i  174 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI  174 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            46777888889999999999999999999999865      488899999999999999999999888777899999999


Q ss_pred             HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747          114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL  193 (478)
Q Consensus       114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (478)
                      .+++.++++..+..-++..   +++..+-.+..+    +.+                                 +.++++
T Consensus       175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~----~l~---------------------------------~G~ryv  214 (524)
T PF05977_consen  175 NALSFLISILALLRWKPPP---PPSSLPRERFFS----ALR---------------------------------EGLRYV  214 (524)
T ss_pred             HHHHHHHHHHHHHHccccc---cccccchhhhhh----hHH---------------------------------HHHHHH
Confidence            9998888766554332211   111111000000    000                                 000000


Q ss_pred             hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747          194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG  273 (478)
Q Consensus       194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~  273 (478)
                                                    .+.|.+..++..   ..+|.....-....+-..+   +...+    ..+.
T Consensus       215 ------------------------------~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a---~~~l~----~~a~  254 (524)
T PF05977_consen  215 ------------------------------RSSPPLRSVLLR---SFLFNLFASAVWALLPLFA---RDVLG----GGAS  254 (524)
T ss_pred             ------------------------------hcchHHHHHHHH---HHHHHHhhhHHHHhhhHHH---HHHhC----CcHH
Confidence                                          001111111111   1112211100011111122   11221    2333


Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      .+..+...  .-.+-+...++.+.++|.      .+..+-+..+.++.+++++..++.               -+.|..+
T Consensus       255 ~yGll~a~--~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~---------------~~~~~~~  311 (524)
T PF05977_consen  255 GYGLLLAA--FGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS---------------PSFWLAL  311 (524)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc---------------hHHHHHH
Confidence            44433332  223344555555555443      233444566777766666554432               3455567


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      +..++.|++-..........+-+.+|++++|..++++.+....+..+|..+.+.+.+
T Consensus       312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999988999999999999999999998877777777777766543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=98.89  E-value=4.1e-07  Score=96.26  Aligned_cols=86  Identities=16%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|.+-|...+.+.|.++++      ++.+++.++....|+|..+++.+.+++.+..||++.|.+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            4566777888999999999898888888887543      4778899999999999999999999988889999999987


Q ss_pred             HHHHHHHHHHHH
Q 011747          115 TVLMIGAIILFL  126 (478)
Q Consensus       115 ~v~m~~~liifl  126 (478)
                      .....++.+...
T Consensus       171 ~~~~~l~~~~~~  182 (471)
T PRK10504        171 IPVGIIGAIATL  182 (471)
T ss_pred             HHHHHHHHHHHH
Confidence            766655555544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.89  E-value=6.1e-08  Score=102.61  Aligned_cols=62  Identities=15%  Similarity=-0.084  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.++++...++.+++.....+...+.+.+..|++.++..+|++.....+|+.+++.+.+.+.
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence            45566667788999998999999999999999999999999999999999999998887554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.84  E-value=3.2e-07  Score=93.26  Aligned_cols=262  Identities=10%  Similarity=0.066  Sum_probs=145.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc--------
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS--------  106 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g--------  106 (478)
                      +.+.++....+.+++.+...+...+++.|.++++      +|..+.++...+.++|.++++.+.+++....|        
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            4444444445566777778888899999988653      48889999999999999999988777766667        


Q ss_pred             chhHhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCc
Q 011747          107 WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPL  186 (478)
Q Consensus       107 ~~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (478)
                      |+..|.+.++..+++.++.+...|.    +.+..+..+                 .    .                   
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e----~~~~~~~~~-----------------~----~-------------------  191 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKE----PQEDASVPK-----------------P----L-------------------  191 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccC----CCcccccch-----------------h----H-------------------
Confidence            9999999888777766543322211    100000000                 0    0                   


Q ss_pred             cchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCC
Q 011747          187 THQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGP  266 (478)
Q Consensus       187 ~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~  266 (478)
                           .-+. .               ..+     .+.-..+....+..+.+...++...+.+..+.+..+..+    .+ 
T Consensus       192 -----~~~~-~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g-  240 (356)
T TIGR00901       192 -----TQAV-L---------------KPI-----REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG-  240 (356)
T ss_pred             -----HHHH-H---------------HHH-----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC-
Confidence                 0000 0               000     000001111123333333444555555544443333322    22 


Q ss_pred             CcccCCcccchhH---HH-HHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 011747          267 KFQIPPGTVGVIS---MI-TIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLH  342 (478)
Q Consensus       267 g~~ip~~~~~~~n---~~-~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~  342 (478)
                         .+++.+..+.   .. ..++..++..+    +.+|.       ++.+.+.+++++.+++..........    ...+
T Consensus       241 ---~~~~~~g~~~~~~~~~~~~~g~~~~g~----l~~r~-------g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~  302 (356)
T TIGR00901       241 ---FSKEEIALVAKINGLLGAILGGLIGGI----IMQPL-------NILYALLLFGIVQALTNAGFVWLASN----GHHD  302 (356)
T ss_pred             ---CCHHHHHHHhHHHHHHHHHHHHHHHHH----HHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHhc----Cccc
Confidence               3444432222   21 12222222222    22343       22344667777766665544333110    0000


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhh
Q 011747          343 PMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFG  395 (478)
Q Consensus       343 g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a  395 (478)
                      +....+.++++...++.++++.+..+....+..+.+|++.+|..+|++....+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            00113445677778899999999999999999999999999999998876543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.82  E-value=8.2e-07  Score=93.93  Aligned_cols=84  Identities=12%  Similarity=0.193  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-cchhHhHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIP  114 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-g~~~~F~i~  114 (478)
                      ...+++.-++.++|.|..-|.......+.++++      +|.++..+++.+.++|..+++.+++++.+.. ||+..|.+.
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~  204 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF  204 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence            445666677889999999999999999888754      4889999999999999999999999888774 999999998


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+++
T Consensus       205 ~~~~~~~~~~~  215 (465)
T TIGR00894       205 GIVGCAWSLLW  215 (465)
T ss_pred             hHHHHHHHHHH
Confidence            77655554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.81  E-value=6.6e-07  Score=94.66  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE--------Eeec
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--------QDSV  105 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i--------~~~~  105 (478)
                      .....++++-++.++|.|+.-|...++++|.++++      +|..+..++-.+..+|.++++.+..++        .+.+
T Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence            34556677778899999999999999999999864      477788888888899988876543322        2457


Q ss_pred             cchhHhHHHHHHHHHHHHHH
Q 011747          106 SWVIGFGIPTVLMIGAIILF  125 (478)
Q Consensus       106 g~~~~F~i~~v~m~~~liif  125 (478)
                      ||++.|.+.++..++.++..
T Consensus       192 gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        192 GWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            99999998877666655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.79  E-value=5.4e-07  Score=95.33  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +...+.++..+.++|.|...|...+++.|.++++      +|.+++.+++.+.++|..+++.+.+++.+++||++.|.+.
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            5666778888889999999999999999999754      4888999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+..
T Consensus       163 ~~~~~~~~~~~  173 (485)
T TIGR00711       163 VPIGIIVVVVA  173 (485)
T ss_pred             hHHHHHHHHHH
Confidence            66555555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.78  E-value=8.5e-07  Score=90.47  Aligned_cols=87  Identities=13%  Similarity=0.130  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|..-+...++..|.++++      +|.+.+.+++...++|..+++.+.+++.+..||+..|.+.
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            4566777778889999999999999999988744      4888999999999999999999888888888999999988


Q ss_pred             HHHHHHHHHHHHh
Q 011747          115 TVLMIGAIILFLV  127 (478)
Q Consensus       115 ~v~m~~~liifl~  127 (478)
                      ++..++..+..+.
T Consensus       166 ~~~~~~~~~~~~~  178 (385)
T TIGR00710       166 SLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666655443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12382 putative transporter; Provisional

Probab=98.77  E-value=1.5e-06  Score=89.64  Aligned_cols=77  Identities=12%  Similarity=0.217  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +...++++-.+.++|.+..-|...+.+.|.++++      +|.++++++..+.++|..+++.+.+++.+.+||+..+.+.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  184 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            4566777777888888888888888888887643      4788999999999999999998888887788998876655


Q ss_pred             HHH
Q 011747          115 TVL  117 (478)
Q Consensus       115 ~v~  117 (478)
                      .+.
T Consensus       185 ~~~  187 (392)
T PRK12382        185 MVL  187 (392)
T ss_pred             HHH
Confidence            443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.74  E-value=4.6e-06  Score=89.30  Aligned_cols=85  Identities=14%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe-eccchhHhH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFG  112 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~-~~g~~~~F~  112 (478)
                      .+.+.+++...+.+++.+...+...++..|.++++      +|.++..+.-.+.++|.++++.+..++.+ ..||+..|.
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~  178 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW  178 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            45666776777888888889999999999998754      47778888889999999999888887777 469999999


Q ss_pred             HHHHHHHHHHHH
Q 011747          113 IPTVLMIGAIIL  124 (478)
Q Consensus       113 i~~v~m~~~lii  124 (478)
                      +.++.+++..+.
T Consensus       179 i~a~l~ll~~l~  190 (491)
T PRK11010        179 LMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHH
Confidence            988776666444

>TIGR00895 2A0115 benzoate transport

Probab=98.70  E-value=2e-06  Score=87.78  Aligned_cols=84  Identities=11%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|..-+...+...|.++++      +|.++++++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  177 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG  177 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence            4566777888999999999999999999988653      4788999999999999999999988888889999999988


Q ss_pred             HHHHHHHHHH
Q 011747          115 TVLMIGAIIL  124 (478)
Q Consensus       115 ~v~m~~~lii  124 (478)
                      ++..++..++
T Consensus       178 ~~~~~~~~~~  187 (398)
T TIGR00895       178 GIAPLLLLLL  187 (398)
T ss_pred             hhHHHHHHHH
Confidence            6544444443

>TIGR00898 2A0119 cation transport protein

Probab=98.69  E-value=3.2e-06  Score=90.23  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.+++...+.++|.|+.-+...+++.|.++++      +|..+..++..+.++|.++++.+...+.+   |+..|.+.
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~  249 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV  249 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence            4556677778889999999999999999998764      36777788888889999998877655543   99999988


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+..
T Consensus       250 ~i~~~~~~~~~  260 (505)
T TIGR00898       250 SLPTFLFFLLS  260 (505)
T ss_pred             HHHHHHHHHHH
Confidence            77666655544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.68  E-value=2e-06  Score=92.10  Aligned_cols=87  Identities=16%  Similarity=0.080  Sum_probs=71.4

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.+.++-.+.++|.|++.|...+.+.+.+.+++     +|.++++++..+.++|..++|.+.+++.++.||++.|.+
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            356777888889999999998888888888775432     588899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH
Q 011747          114 PTVLMIGAIILF  125 (478)
Q Consensus       114 ~~v~m~~~liif  125 (478)
                      .....++.+++.
T Consensus       167 ~~~~~~~~~~l~  178 (495)
T PRK14995        167 NVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            766555554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.68  E-value=2.2e-06  Score=89.99  Aligned_cols=82  Identities=16%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.+++...+.+++.|..-+...+.+.+.++++      +|..+..+++.+.++|+.+++.+.+++.+.+||++.|.+.
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3455555556677888887788889999998754      4888999999999999999998888888889999999987


Q ss_pred             HHHHHHHH
Q 011747          115 TVLMIGAI  122 (478)
Q Consensus       115 ~v~m~~~l  122 (478)
                      ++..++..
T Consensus       184 ~i~~~~~~  191 (434)
T PRK11663        184 GIIAIVVG  191 (434)
T ss_pred             HHHHHHHH
Confidence            76554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.67  E-value=4.2e-06  Score=85.13  Aligned_cols=85  Identities=11%  Similarity=0.057  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCc
Q 011747          349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAG  428 (478)
Q Consensus       349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~  428 (478)
                      .++.+...++.+++.-...+....++.+..|++. +..+|++.....+|..+++.+.+.+.+..      +         
T Consensus       288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~g~~~~~~------g---------  351 (375)
T TIGR00899       288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRA-GAATTLYTNTGRVGWIIAGSVGGILAERW------S---------  351 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhc------c---------
Confidence            3444555677788887888888888888898865 69999999888899999888887654321      1         


Q ss_pred             chHHHHHHHHHHHHHHHHHHHH
Q 011747          429 RLDYFYFLIAGLGGLNIVYFLY  450 (478)
Q Consensus       429 ~~~~~f~~la~l~~v~~vif~~  450 (478)
                       ....|+..+++.++..++...
T Consensus       352 -~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       352 -YHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             -chhHHHHHHHHHHHHHHHHhe
Confidence             234566666666666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.65  E-value=4.5e-06  Score=85.23  Aligned_cols=85  Identities=14%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.+++...+.+++.|...+...++..|.++++      +|.+++++.+.+.++|..+++.+.+++.+..||+..|.+.
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            3456667777888899988899999999988654      4888999999999999999999888888888999999987


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+..
T Consensus       152 ~~~~~~~~~~~  162 (377)
T PRK11102        152 ALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHH
Confidence            77666655444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.65  E-value=5e-06  Score=86.85  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +...++++-++.++|.|..-+...+...|.|+++      ++.+..+++..+.++|..+++.+.+++.+..||++.|.+.
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~  176 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII  176 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            5666777778888888766555557777888754      4778899999999999999998888888778999999988


Q ss_pred             HHHHHHHHHH
Q 011747          115 TVLMIGAIIL  124 (478)
Q Consensus       115 ~v~m~~~lii  124 (478)
                      ++..+++.+.
T Consensus       177 ~~~~~i~~~~  186 (413)
T PRK15403        177 AVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHH
Confidence            7766666554

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.63  E-value=3.1e-06  Score=88.16  Aligned_cols=78  Identities=12%  Similarity=0.247  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++-.+.++|.|+.-+...++..|.++++      +|.++.+++..+.++|.++++.+.+++.+.+||+..|.++
T Consensus       105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~  178 (426)
T PRK12307        105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG  178 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence            5667777888899999999999999999988754      4788899999999999999998888888889999999986


Q ss_pred             HHHH
Q 011747          115 TVLM  118 (478)
Q Consensus       115 ~v~m  118 (478)
                      ++..
T Consensus       179 ~~~~  182 (426)
T PRK12307        179 LLPV  182 (426)
T ss_pred             HHHH
Confidence            5443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.63  E-value=5.1e-06  Score=86.24  Aligned_cols=83  Identities=13%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.+++.-.+.+++.|..-|...++..|.++++      +|..+..+++.+.|+|..+++.+.+++.+..||+..|.+
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            45677777788889999999999999999988654      588899999999999999999999999888999999998


Q ss_pred             HHHHHHHHH
Q 011747          114 PTVLMIGAI  122 (478)
Q Consensus       114 ~~v~m~~~l  122 (478)
                      .++..++.+
T Consensus       180 ~~~l~~~~~  188 (394)
T PRK10213        180 AAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHH
Confidence            776554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.62  E-value=4.4e-06  Score=87.23  Aligned_cols=109  Identities=12%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHH
Q 011747          277 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQL  356 (478)
Q Consensus       277 ~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y  356 (478)
                      .+..+..++..|+..++    .+|.++       .+-+.+|+++.+++++...+..              -+.++.+...
T Consensus       264 ~~~~i~~ii~~~~~~~l----~~r~g~-------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~  318 (437)
T TIGR00792       264 SIAIVAGLIGVLLFPRL----VKKFGR-------KILFAGGILLMVLGYLIFFFAG--------------SNLPLILVLI  318 (437)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHcc--------------hhHHHHHHHH
Confidence            34444445555544443    344432       2335667666666665443321              1234455667


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          357 ILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       357 ~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      ++.+++.....+...++..+.+|       ++.+|..+|++.+...+|..+++.+.+.+-+
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       319 ILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889988888888888887765       5678999999999999999888888776543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.62  E-value=7.4e-06  Score=84.88  Aligned_cols=81  Identities=11%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-cchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-g~~~~F~i  113 (478)
                      +...++++-++.++|.|..-+...+.+.+.|+ +      +|..+..++..+.++|..+++.+.+++.++. +|+..|.+
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~  168 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW  168 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            45567788889999999999999999888875 2      3678888888899999999988888877664 89888766


Q ss_pred             HHHHHHHHH
Q 011747          114 PTVLMIGAI  122 (478)
Q Consensus       114 ~~v~m~~~l  122 (478)
                      -++..++.+
T Consensus       169 ~~~~~~~~~  177 (393)
T PRK09705        169 WALPAVVAL  177 (393)
T ss_pred             HHHHHHHHH
Confidence            444433333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.61  E-value=2.2e-06  Score=86.55  Aligned_cols=84  Identities=15%  Similarity=0.123  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|..-+...+...+.+++       +|..+..++..+.++|+++++.+.+.+.+..||+..|.+.
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~  162 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM  162 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence            556677777788888887767777776666642       3778899999999999887654555555568999999988


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+..
T Consensus       163 ~~~~~~~~~~~  173 (377)
T TIGR00890       163 GIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHHHHH
Confidence            77666655544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.60  E-value=6.6e-06  Score=84.79  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +...++++..+.++|.|..-+...+...|.++++      +|.+++++.+...++|..+++.+.+++.+..||+..|.+.
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            3445566667778888887888888888888754      4888999999999999999998887777778999999988


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+..
T Consensus       164 ~~~~~i~~~~~  174 (392)
T PRK10473        164 AAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHH
Confidence            77666555543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.59  E-value=1.1e-05  Score=83.00  Aligned_cols=71  Identities=8%  Similarity=-0.004  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHh
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGF  111 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F  111 (478)
                      +.+.++++.++.++|.|.+.|...+...+.++++      +|.+.+++++.+.|+|..+++.+.+++.+...+...+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  163 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW  163 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            5667777888889999888887777777776543      4788999999999999999999988887654343333

>PRK09848 glucuronide transporter; Provisional

Probab=98.59  E-value=3.8e-06  Score=88.50  Aligned_cols=85  Identities=8%  Similarity=0.027  Sum_probs=64.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh-------hH
Q 011747          311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH-------MK  383 (478)
Q Consensus       311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~-------~k  383 (478)
                      -+-+.+|+++.+++++...+..             ..+.++.+...++.++|+.+..+...+...+.+|++       .+
T Consensus       294 ~~~~~~g~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~  360 (448)
T PRK09848        294 KNTFLIGALLGTCGYLLFFWVS-------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIE  360 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccch
Confidence            3456778877777765543211             134566666778899999999999999999888764       56


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          384 SIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       384 s~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      |.++|++.+..-+|..+++.+.+.+
T Consensus       361 G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        361 GLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988777654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.58  E-value=8.4e-06  Score=86.10  Aligned_cols=84  Identities=14%  Similarity=0.037  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHH-HHhhceeeeEEeeccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI-LITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      +...+++...+.+++.|..-|.......+.++++      +|..+.++++.+.++|. +++++....+....||+.+|.+
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            3555666677888888888888888888887653      47889999999999986 4555432222223599999998


Q ss_pred             HHHHHHHHHHH
Q 011747          114 PTVLMIGAIIL  124 (478)
Q Consensus       114 ~~v~m~~~lii  124 (478)
                      .++..++..++
T Consensus       193 ~~~~~~~~~~l  203 (452)
T PRK11273        193 PAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHHHH
Confidence            77665554433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.56  E-value=7.5e-06  Score=96.15  Aligned_cols=64  Identities=11%  Similarity=0.025  Sum_probs=54.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS  104 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~  104 (478)
                      +.+.++++.++.+++.|.+-|...+++.|.++++      +|..+++++..+.++|.++++.+.+++.+.
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3666777888889999999999999999999764      488899999999999999999888877653

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.56  E-value=5.1e-06  Score=88.36  Aligned_cols=79  Identities=14%  Similarity=0.199  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.+++.|+..+...++..|.++++      +|..++++++.+.++|.++++.+.+++.+.+||++.|.+.
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            5666777888889999999999999999998754      4788899999999999999999888888889999999875


Q ss_pred             HHHHH
Q 011747          115 TVLMI  119 (478)
Q Consensus       115 ~v~m~  119 (478)
                      ++..+
T Consensus       181 ~~~~~  185 (496)
T PRK03893        181 ILPII  185 (496)
T ss_pred             HHHHH
Confidence            54433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.55  E-value=4.2e-06  Score=87.30  Aligned_cols=134  Identities=11%  Similarity=0.158  Sum_probs=84.1

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      .+.+++.+..++..++..++    .+|.++       .+.+.++.++.+++++..++.               .++++++
T Consensus       266 ~~~~~~~~~~~~~~~~~g~l----~dr~g~-------~~~~~~~~~l~~~~~~l~~~~---------------~~~~~~~  319 (420)
T PRK09528        266 YLNSFQVFLEALIMFFAPFI----INRIGA-------KNALLLAGTIMAVRIIGSGFA---------------TGPLEVS  319 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhCc-------chhhHHHHHHHHHHHHHHHhc---------------ccHHHHH
Confidence            34444555444555544443    345432       223566666666665544322               2456777


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH-HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY  432 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  432 (478)
                      ...++.+++.....+...+++.+..|++.++...+. +.+...+|..+++.+.+.+.+..      +          ...
T Consensus       320 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G----------~~~  383 (420)
T PRK09528        320 ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G----------FQG  383 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C----------chH
Confidence            778899998888888888999999999999887655 66677788888877776554321      1          234


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011747          433 FYFLIAGLGGLNIVYFL  449 (478)
Q Consensus       433 ~f~~la~l~~v~~vif~  449 (478)
                      .|...+++.++..++.+
T Consensus       384 ~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        384 TYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56666666655554444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.54  E-value=3.7e-05  Score=79.76  Aligned_cols=84  Identities=11%  Similarity=0.113  Sum_probs=64.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee-ccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~-~g~~~~F~i  113 (478)
                      +.+.+++...+.++..+...|...++..|..+++      +|.++..+..++.++|.++++.+..++.+. .||+..|.+
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i  166 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL  166 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence            4555555555667788888999999999987654      478888888899999999998777766664 599999999


Q ss_pred             HHHHHHHHHHH
Q 011747          114 PTVLMIGAIIL  124 (478)
Q Consensus       114 ~~v~m~~~lii  124 (478)
                      .++..++..+.
T Consensus       167 ~a~~~l~~~l~  177 (402)
T PRK11902        167 MAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHH
Confidence            87766655543

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.54  E-value=1.3e-05  Score=82.84  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=47.3

Q ss_pred             CCcccccchhccCCCCCCcccccchh-hhH-HHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHH
Q 011747           52 GIRPCSIPFGVDQFDATTDEGVKGIN-SFF-NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF  125 (478)
Q Consensus        52 ~~kpni~~~~~dq~~~~~~~~~~~~~-~~F-~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liif  125 (478)
                      ..-|...+...|..+++      .|+ ..+ ++...+.++|..+++.+.+++.+++||+..|.+.++..++..+..
T Consensus       121 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~  190 (393)
T PRK15011        121 TANPQMFALAREHADKT------GREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV  190 (393)
T ss_pred             hhHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            34455555555544322      122 233 578889999999999999999888999999998876655554443

>PRK11043 putative transporter; Provisional

Probab=98.53  E-value=1.5e-05  Score=82.33  Aligned_cols=85  Identities=11%  Similarity=0.112  Sum_probs=66.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.+..-+...++..|.++++      ++.+.++......++|..+++.+.+++.+.+||+..|.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            4555666677777887777777778888888654      4677888888889999999999989888889999999987


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+..
T Consensus       167 ~~~~~~~~~~~  177 (401)
T PRK11043        167 FAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHH
Confidence            77666655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.51  E-value=1.8e-05  Score=84.02  Aligned_cols=299  Identities=12%  Similarity=0.020  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE--Ee-------e---
Q 011747           37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--QD-------S---  104 (478)
Q Consensus        37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i--~~-------~---  104 (478)
                      ..+.+++.+.-++.....+...++++|..++++.    +++.++.|+.+.+|+|+.+++.+.++.  .+       +   
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~  190 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG  190 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence            4555666666777777888889999999987642    346899999999999999998766543  11       1   


Q ss_pred             ---ccchhHhHHHHHHHHHHHHHHHhcccceeeeCCCC-CchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccc
Q 011747          105 ---VSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEG-SIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV  180 (478)
Q Consensus       105 ---~g~~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g-~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (478)
                         .+++..|.++++.++++.++-...-|.+   +|.. +..                  ++    .   .++.....  
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~---~~~~~~~~------------------~~----~---~~~~~~~~--  240 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVKEN---PLIGSDDF------------------IN----S---EAAPPSKH--  240 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeeecc---CCCccccc------------------hh----h---hccccccc--
Confidence               2678999999998888888765543322   1110 000                  00    0   00000000  


Q ss_pred             cccCCccchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-h
Q 011747          181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-K  259 (478)
Q Consensus       181 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~  259 (478)
                            .. ...+   +.               .|    +.-.+--|.+.+++..-++.-+=|..+-+..|.++-+.. +
T Consensus       241 ------~~-~~~~---~~---------------i~----~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~  291 (477)
T TIGR01301       241 ------GE-EAFF---GE---------------LF----GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYG  291 (477)
T ss_pred             ------ch-hhhH---HH---------------HH----HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcC
Confidence                  00 0000   00               00    000111233444555544454455555555555543321 1


Q ss_pred             hccCCCCCcccC---CcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhh-HHHHHHHHHHHHHHHHHhhhh
Q 011747          260 MNRHLGPKFQIP---PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRI-GIGMIFSILSMIVAGLVERGR  335 (478)
Q Consensus       260 md~~~~~g~~ip---~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki-~iG~~l~~ls~~~~~~~~~~~  335 (478)
                      -+..-...++--   ..+-..+|.+...    ++..++.++.+|.+       ..++. .++.++.+++++...++....
T Consensus       292 ~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~  360 (477)
T TIGR01301       292 GSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVA  360 (477)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            000000000000   0111222333322    33333333344432       12334 688889999988877665310


Q ss_pred             hh--h-hccCC--CCcch-HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCh--hhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011747          336 RA--S-AHLHP--MSQVS-VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD--HMKSIANSLLFCSFGFASYLSSLLITI  407 (478)
Q Consensus       336 ~~--~-~~~~g--~~~~s-~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~--~~ks~~~gl~~l~~a~g~~l~~~l~~~  407 (478)
                      .+  . ...+.  ..+.. .++.+..+.+.|++-......=++.+.+..|+  +-.|.+||+...+..+...+..+..+.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~  440 (477)
T TIGR01301       361 KNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP  440 (477)
T ss_pred             hccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            00  0 00000  11122 36677788999999999999999999999995  455999999999999999988876665


Q ss_pred             hh
Q 011747          408 VH  409 (478)
Q Consensus       408 ~~  409 (478)
                      +.
T Consensus       441 ~~  442 (477)
T TIGR01301       441 WD  442 (477)
T ss_pred             HH
Confidence            43

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.51  E-value=2.4e-05  Score=80.67  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|...+....+..|.++++      ++.++.+++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~  168 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL  168 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            4556667777778888877777777777877643      4677888888899999999998888888778999999987


Q ss_pred             HHHHHHHHH
Q 011747          115 TVLMIGAII  123 (478)
Q Consensus       115 ~v~m~~~li  123 (478)
                      ++..++..+
T Consensus       169 ~~~~~~~~~  177 (394)
T PRK11652        169 LLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHH
Confidence            665554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.49  E-value=9.9e-06  Score=82.34  Aligned_cols=81  Identities=14%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE--------eeccchh
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVI  109 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~--------~~~g~~~  109 (478)
                      .++++..+.++|.|..-+...+++.|.++++      +|.....+...+.++|.++++.+...+.        +.+||++
T Consensus        98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~  171 (394)
T TIGR00883        98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI  171 (394)
T ss_pred             HHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHH
Confidence            4566677888899999999999999988754      4778889999999999998876544332        3579999


Q ss_pred             HhHHHHHHHHHHHHH
Q 011747          110 GFGIPTVLMIGAIIL  124 (478)
Q Consensus       110 ~F~i~~v~m~~~lii  124 (478)
                      .|.+.++..+++..+
T Consensus       172 ~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       172 PFLVSAVLVLIGLYL  186 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999877666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.46  E-value=2.6e-05  Score=80.34  Aligned_cols=84  Identities=14%  Similarity=0.143  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.+++.|..-+...+...|.++++      +|.+.++++..+.++|..+++.+.+++.+..||++.|.+.
T Consensus        90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~  163 (382)
T PRK10091         90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI  163 (382)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence            5667777788888888887777777777776543      4677888889999999999988888888888999999998


Q ss_pred             HHHHHHHHHH
Q 011747          115 TVLMIGAIIL  124 (478)
Q Consensus       115 ~v~m~~~lii  124 (478)
                      ++..++..+.
T Consensus       164 ~~~~~~~~~~  173 (382)
T PRK10091        164 AVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHH
Confidence            7765555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.46  E-value=6.7e-06  Score=83.12  Aligned_cols=86  Identities=19%  Similarity=0.151  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhh-ceeeeEEeeccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQ-TVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~-~~~~~i~~~~g~~~~F~i  113 (478)
                      +.+.++++..+.+++.|..-|...++..|.++++      +|.++++++..+.++|..+++ .+...+.+..+|+..|.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV  155 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            5667777888889999999999999999998764      477888999999999999998 455666667899999998


Q ss_pred             HHHHHHHHHHHHH
Q 011747          114 PTVLMIGAIILFL  126 (478)
Q Consensus       114 ~~v~m~~~liifl  126 (478)
                      .++..++..++.+
T Consensus       156 ~~~~~~~~~~~~~  168 (379)
T TIGR00881       156 PGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHHHHHHHh
Confidence            7776655544443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.45  E-value=4.1e-06  Score=89.14  Aligned_cols=84  Identities=13%  Similarity=0.050  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHH
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL  117 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~  117 (478)
                      ...+.+.+++++.+.......++..|+.+ +++   +......++.|.+.++|.++++.+.+++.+.+||+..|.+.++.
T Consensus       122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l  197 (468)
T TIGR00788       122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL  197 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            33346788899999999999999999998 322   24555778999999999999999999998889999999998887


Q ss_pred             HHHHHHHH
Q 011747          118 MIGAIILF  125 (478)
Q Consensus       118 m~~~liif  125 (478)
                      +++..+..
T Consensus       198 ~ll~~~~~  205 (468)
T TIGR00788       198 LLLQLFVS  205 (468)
T ss_pred             HHHHHHHH
Confidence            77774443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.44  E-value=3.7e-05  Score=79.75  Aligned_cols=77  Identities=13%  Similarity=0.216  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHH
Q 011747           40 VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMI  119 (478)
Q Consensus        40 ~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~  119 (478)
                      ++...+.++|.|++-|...+++.|.++++      +|.++.++.....++|..+||.+.+++.+ ..|+..|.+.+...+
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~  164 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALAD-PHAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34456789999999999999999999864      58999999999999999999999888876 457777777665554


Q ss_pred             HHHH
Q 011747          120 GAII  123 (478)
Q Consensus       120 ~~li  123 (478)
                      ++.+
T Consensus       165 ~~~~  168 (393)
T PRK11195        165 LAAL  168 (393)
T ss_pred             HHHH
Confidence            4433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.43  E-value=1.2e-05  Score=85.28  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=62.9

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec---cchhH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV---SWVIG  110 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~---g~~~~  110 (478)
                      .+.+.+++...+.++|.|..-|...+.+.+-++++      +|..++.++-.+.++|..+++.+..++.+..   +|+..
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence            35666777777888998988899999999999865      4777888999999999999987765554432   58888


Q ss_pred             hHHHHHHHHHHH
Q 011747          111 FGIPTVLMIGAI  122 (478)
Q Consensus       111 F~i~~v~m~~~l  122 (478)
                      |.+.++..++..
T Consensus       194 f~~~g~~~~~~~  205 (467)
T PRK09556        194 FIFPSIIALIIG  205 (467)
T ss_pred             HHHHHHHHHHHH
Confidence            887665544433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.42  E-value=3.9e-05  Score=80.35  Aligned_cols=308  Identities=9%  Similarity=0.014  Sum_probs=170.8

Q ss_pred             HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeee----EEee---ccchh
Q 011747           37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY----IQDS---VSWVI  109 (478)
Q Consensus        37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~----i~~~---~g~~~  109 (478)
                      ..+++...+..++...+.-+..+++.|..++++     +|.+..++-....++|.++...+.+.    .++.   .+|++
T Consensus       104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~  178 (428)
T PF13347_consen  104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRW  178 (428)
T ss_pred             HHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHH
Confidence            334566666788888888888999999987654     47777777777778887655444443    3332   16887


Q ss_pred             HhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccch
Q 011747          110 GFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQ  189 (478)
Q Consensus       110 ~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (478)
                      .+.+.++..+++.++.....|. . +++..+.             +     +.    .                      
T Consensus       179 ~~~v~~iv~~v~~~i~~~~~ke-~-~~~~~~~-------------~-----~~----~----------------------  212 (428)
T PF13347_consen  179 MALVLAIVGLVFFLITFFFVKE-R-SVEVTEQ-------------E-----KK----I----------------------  212 (428)
T ss_pred             HHHHHHHHHHHHhhhhhheeee-c-ccccccc-------------c-----cc----c----------------------
Confidence            7777666666666655544332 0 0000000             0     00    0                      


Q ss_pred             hhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhh-hccCCCCCc
Q 011747          190 FRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMK-MNRHLGPKF  268 (478)
Q Consensus       190 ~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~-md~~~~~g~  268 (478)
                       ++.+.                           ..+.++-..+..+++...+.+..+.-..+....+... +..+ .   
T Consensus       213 -~~~~~---------------------------~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~---  260 (428)
T PF13347_consen  213 -SLRDS---------------------------LRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G---  260 (428)
T ss_pred             -ccccc---------------------------hhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h---
Confidence             00000                           0000111112334444444555554444444333332 2211 0   


Q ss_pred             ccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcch
Q 011747          269 QIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVS  348 (478)
Q Consensus       269 ~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s  348 (478)
                        -.+.+..+..+..++..|+..+    +.+|.++       .+-+.+|.++.+++++...+..             ..+
T Consensus       261 --~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk-------~~~~~~~~~~~~~~~~~~~~~~-------------~~~  314 (428)
T PF13347_consen  261 --LISIFMLIFFVASIVGSPLWGR----LSKRFGK-------KKVYIIGLLLAALGFLLLFFLG-------------PGS  314 (428)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHH----HHHHccc-------eeehhhhHHHHHHHHHHHHHHH-------------hhh
Confidence              0122333333444455554443    3455543       2345677777777777665543             146


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccc
Q 011747          349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWL  421 (478)
Q Consensus       349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~  421 (478)
                      .++.+...++.+++-....+...+...+..+       ++..|.++|++.+..-+|..+++.+.+.+-......++.   
T Consensus       315 ~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~---  391 (428)
T PF13347_consen  315 PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA---  391 (428)
T ss_pred             HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc---
Confidence            7888888999999998888888888887776       456799999999999999988887776553322111100   


Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011747          422 TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY  457 (478)
Q Consensus       422 ~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~  457 (478)
                       .+.++........+.+.+..+..++-+++.++|+-
T Consensus       392 -~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l  426 (428)
T PF13347_consen  392 -AVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPL  426 (428)
T ss_pred             -CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence             01122223444455555555555555566666653

>TIGR00889 2A0110 nucleoside transporter

Probab=98.42  E-value=7.8e-05  Score=78.08  Aligned_cols=120  Identities=18%  Similarity=0.198  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH-
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-  391 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~-  391 (478)
                      -+.++.++.++++........           ...+.+.++...++.++++.+..+....++.+.+|++.|+.++|+.. 
T Consensus       283 ~l~~~~~~~~v~~~l~~~~~~-----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~  351 (418)
T TIGR00889       283 VMLLSLVAWALRFGFFAYGDP-----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTL  351 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHcCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            356666666666544433210           01123334556789999999999999999999999999999999996 


Q ss_pred             HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 011747          392 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR  453 (478)
Q Consensus       392 l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~  453 (478)
                      ...++|..+|+.+.+...+...   +     .+.  .....-|...+++.++..++++++.+
T Consensus       352 ~~~~lg~~iGp~l~G~l~~~~g---~-----~~~--~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       352 MCNGFGSLLGYILSGVMVEKMF---A-----YGT--FDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhc---c-----ccC--CchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5678899888888876543210   0     000  01234455666666666665555554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.41  E-value=4.9e-05  Score=84.94  Aligned_cols=81  Identities=16%  Similarity=0.082  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.+++++++++++..++..               +.++++...++.++......+....++....|.+.|+..+|+....
T Consensus       628 l~~~~~lsai~~ll~~~~~---------------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~  692 (742)
T TIGR01299       628 LAGSMVLSCISCFFLSFGN---------------SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNAL  692 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            5667777777766555432               2233444456677777777888888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhh
Q 011747          394 FGFASYLSSLLITIVH  409 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~~  409 (478)
                      ..+|..+++.+++.+.
T Consensus       693 ~rlGaiigp~i~g~L~  708 (742)
T TIGR01299       693 CKAAAVLGILIFGSFV  708 (742)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998886543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.39  E-value=1.2e-05  Score=82.27  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc--chhHhH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS--WVIGFG  112 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g--~~~~F~  112 (478)
                      +.+.++++..+.++|.|...+...++..|.++++      +|.++.+++..+.++|..+++.+.+.+.+..+  |+..|.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~  172 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF  172 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            4566777788889999999999999999988754      48889999999999999999988777766555  999998


Q ss_pred             HHHHHHHHHHH
Q 011747          113 IPTVLMIGAII  123 (478)
Q Consensus       113 i~~v~m~~~li  123 (478)
                      +.++..++.++
T Consensus       173 ~~~~~~~~~~~  183 (405)
T TIGR00891       173 ISILPIIFALW  183 (405)
T ss_pred             HHHHHHHHHHH
Confidence            87665555443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.39  E-value=6.5e-05  Score=77.41  Aligned_cols=82  Identities=10%  Similarity=-0.013  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +...+.++-.+.++|.|.. ++..+..++.++++      +|.++.+++..+.++|..+++.+.+++.+++||+..|.+.
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            5667778888888998864 44455557777643      5889999999999999999999999998889999999885


Q ss_pred             HHHHHHHHH
Q 011747          115 TVLMIGAII  123 (478)
Q Consensus       115 ~v~m~~~li  123 (478)
                      ++.-++..+
T Consensus       151 ~~l~~~~~~  159 (368)
T TIGR00903       151 AAVAAAGII  159 (368)
T ss_pred             HHHHHHHHH
Confidence            554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03699 putative transporter; Provisional

Probab=98.36  E-value=0.00012  Score=75.80  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE-EeeccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI-QDSVSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i-~~~~g~~~~F~i  113 (478)
                      +.+.++++..+.+++.|...++..+.+.+.++++      +|.......+...++|+.+++.+.+++ .+..||+..|.+
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~  167 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC  167 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            4566677778888999988899999999988543      366777777888899998888777765 445799999998


Q ss_pred             HHHHHHHHHHHH
Q 011747          114 PTVLMIGAIILF  125 (478)
Q Consensus       114 ~~v~m~~~liif  125 (478)
                      .++..++..+..
T Consensus       168 ~~~~~~~~~~~~  179 (394)
T PRK03699        168 IGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            777665554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.34  E-value=4e-05  Score=81.65  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=54.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE---------eec
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ---------DSV  105 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~---------~~~  105 (478)
                      +...+++...+.++|.|..-+ ....+++.++++      +|..+..+.+...|+|+.+++.+.+.+.         ...
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            344555556667777776533 344567777643      4778888888888888887765554332         125


Q ss_pred             cchhHhHHHHHHHHHHHHHH
Q 011747          106 SWVIGFGIPTVLMIGAIILF  125 (478)
Q Consensus       106 g~~~~F~i~~v~m~~~liif  125 (478)
                      ||+..|.+.++..++..+..
T Consensus       196 gWr~~f~i~g~l~l~~~l~~  215 (476)
T PLN00028        196 AWRIAFFVPGLLHIIMGILV  215 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            89999998777665554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.33  E-value=3.3e-06  Score=87.16  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFG  112 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~  112 (478)
                      .+.+.+.+.=.+.++|-..+-|...++++|.|+++      +|.+.|.||||+|++|+.+|..+..++.+.-+ |+++|.
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            56777888889999999999999999999999876      59999999999999999999988889988655 999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011747          113 IPTVLMIGAIILFLV  127 (478)
Q Consensus       113 i~~v~m~~~liifl~  127 (478)
                      ..++.+++..++...
T Consensus       193 ~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  193 GSAVLGVIVGLLVFL  207 (493)
T ss_pred             eehHHHHHHHHHHHh
Confidence            888777766665443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.33  E-value=0.0001  Score=76.11  Aligned_cols=81  Identities=14%  Similarity=0.153  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH-HHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFC  392 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl-~~l  392 (478)
                      +.+|.++.++++......               .++++++...++.+++.........++..+..|++.++...+. +..
T Consensus       287 l~~~~~l~~l~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~  351 (396)
T TIGR00882       287 LLIAGTIMSVRIIGSSFA---------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQF  351 (396)
T ss_pred             HHHHHHHHHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHH
Confidence            566666666655432211               3566777788899998877777788888888899998887765 557


Q ss_pred             HhhHHHHHHHHHHHHhh
Q 011747          393 SFGFASYLSSLLITIVH  409 (478)
Q Consensus       393 ~~a~g~~l~~~l~~~~~  409 (478)
                      ...+|+.+++.+.+...
T Consensus       352 ~~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       352 AKQLAMIFLSTLAGNMY  368 (396)
T ss_pred             HHHHHHHHHHHhHHHHH
Confidence            77888888877776554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.31  E-value=0.0002  Score=76.44  Aligned_cols=74  Identities=16%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceee----eEE----eeccchh
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV----YIQ----DSVSWVI  109 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~----~i~----~~~g~~~  109 (478)
                      .+.+.-++.++|.|+.-|+..++..|.++++      +|..+..+...+.++|..++..+..    ++.    .++||++
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~  193 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI  193 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence            3566677889999999999999999998754      3566677778778888877764432    222    2589999


Q ss_pred             HhHHHHHH
Q 011747          110 GFGIPTVL  117 (478)
Q Consensus       110 ~F~i~~v~  117 (478)
                      .|.+.++.
T Consensus       194 ~f~i~~~~  201 (490)
T PRK10642        194 PFFIALPL  201 (490)
T ss_pred             HHHHHHHH
Confidence            99986643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.31  E-value=0.00013  Score=76.47  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE--------eeccch
Q 011747           37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWV  108 (478)
Q Consensus        37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~--------~~~g~~  108 (478)
                      ..+.+.-.+.++|.|+.-|...+++.|.++++      +|..+.++.+.+.++|.++++.+...+.        ..+||+
T Consensus       125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr  198 (432)
T PRK10406        125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWR  198 (432)
T ss_pred             HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence            45666777889999999999999999988754      3667788889999999888876543332        258999


Q ss_pred             hHhHHHHHHHHHH
Q 011747          109 IGFGIPTVLMIGA  121 (478)
Q Consensus       109 ~~F~i~~v~m~~~  121 (478)
                      ..|.+.++..++.
T Consensus       199 ~~F~i~~~~~ll~  211 (432)
T PRK10406        199 IPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999876654443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.29  E-value=8.3e-05  Score=79.66  Aligned_cols=82  Identities=18%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE-------------
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-------------  102 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~-------------  102 (478)
                      ...++++..+.++|.|+.-+....++.+.++++      .|.++.++++.+.++|.++++.+...+.             
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            567888899999999999999999999999865      4888899999999999888875543221             


Q ss_pred             ----------eeccchhHhHHHHHHHHHHHH
Q 011747          103 ----------DSVSWVIGFGIPTVLMIGAII  123 (478)
Q Consensus       103 ----------~~~g~~~~F~i~~v~m~~~li  123 (478)
                                .+.+|++.|.+.++..++..+
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                      124899999887766555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.27  E-value=5e-05  Score=79.84  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeee-EEeeccchhHhHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY-IQDSVSWVIGFGIP  114 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~-i~~~~g~~~~F~i~  114 (478)
                      ...+++...+.+++.|..-+.......|.++++      +|..++++++.+.++|..+++.+.+. +....||+.+|.+.
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~  191 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP  191 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            445556667778888888888888888888654      48899999999999999888766554 44457999999998


Q ss_pred             HHHHHHHHHHH
Q 011747          115 TVLMIGAIILF  125 (478)
Q Consensus       115 ~v~m~~~liif  125 (478)
                      ++..++..+..
T Consensus       192 ~~~~~i~~~~~  202 (438)
T TIGR00712       192 AICAIIVALFA  202 (438)
T ss_pred             HHHHHHHHHHH
Confidence            77766654443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.25  E-value=0.00026  Score=72.91  Aligned_cols=86  Identities=14%  Similarity=0.237  Sum_probs=72.8

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.+.++=++.++..|.+-+-..+..+|..+++      ||.++..+.+.+..+.-.+|.-+..++.+.+|||..|.+
T Consensus        99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~  172 (394)
T COG2814          99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA  172 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence            46778888889999999999999999999999876      589999999999999988887788899999999999997


Q ss_pred             HHHHHHHHHHHH
Q 011747          114 PTVLMIGAIILF  125 (478)
Q Consensus       114 ~~v~m~~~liif  125 (478)
                      -++.-+++++..
T Consensus       173 ia~l~ll~~~~~  184 (394)
T COG2814         173 IAVLALLALLLL  184 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            655554444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.23  E-value=7.8e-05  Score=79.11  Aligned_cols=311  Identities=14%  Similarity=0.192  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee-ccchhHhHHHHH
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTV  116 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~-~g~~~~F~i~~v  116 (478)
                      .+.+.-++-+++.|..-|++..+.++=.+++      +|.++.++.|.+..+|.+++.-+++++.+. .||...|.+.++
T Consensus       130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~  203 (466)
T KOG2532|consen  130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI  203 (466)
T ss_pred             hhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence            4455567778889999999999988877654      489999999999999999998888988887 999999998776


Q ss_pred             HHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhhhh
Q 011747          117 LMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKA  196 (478)
Q Consensus       117 ~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  196 (478)
                      .-++-.+++...   |. ..|..+|....     .. +                                    +.+...
T Consensus       204 ~g~i~~~~w~~~---~~-d~P~~h~~is~-----~E-l------------------------------------~~I~~~  237 (466)
T KOG2532|consen  204 VGLIWFILWFLF---YS-DSPSKHPNISE-----KE-L------------------------------------KYIEKG  237 (466)
T ss_pred             HHHHHHHHHHHH---hc-CCcccCCCCCH-----HH-H------------------------------------HHHHhc
Confidence            666555555432   22 23443332110     00 0                                    000000


Q ss_pred             hhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCC-ccc
Q 011747          197 AMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP-GTV  275 (478)
Q Consensus       197 ~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~-~~~  275 (478)
                      +....     .......||           |++++=.|++...+-.+.-..-.....+.....|+.-+  ++++.. +++
T Consensus       238 k~~~~-----~~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~f~v~~~G~~  299 (466)
T KOG2532|consen  238 KSEAH-----VKKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--GFDVRETGFL  299 (466)
T ss_pred             ccccc-----cCCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--CCChhhhhHH
Confidence            00000     000012343           22333333333222111110000011111123444322  344433 445


Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhH--HHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG--IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~--iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      .++.-+...+.-.+...+- -.++++.   ...+..+|+.  +++...++.+++.++...             -+. |  
T Consensus       300 salP~l~~~~~k~~~g~ls-D~l~~~~---ls~t~~rkifn~i~~~~~ai~l~~l~~~~~-------------~~~-~--  359 (466)
T KOG2532|consen  300 SALPFLAMAIVKFVAGQLS-DRLTFRI---LSETTVRKIFNTIAFGGPAVFLLVLAFTSD-------------EHR-L--  359 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHhhcc---CchHhHHHHHHhHHHHHHHHHHHeeeecCC-------------Ccc-h--
Confidence            5555555444443333322 2233321   1235566764  444444444444433321             011 2  


Q ss_pred             HHHHHHHHHHHHHhhhHHHHH--Hhh-cChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcch
Q 011747          354 PQLILMGFCEAFNIIGQIEFF--NKQ-FPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL  430 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~--~~~-aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~  430 (478)
                      .+.++++++..+..-...-+.  ... ||++. ++.||+-.+..+++..+++.+++.+-...   .-+.|          
T Consensus       360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a-~~l~g~~~~~~~~~~~~~P~~vg~~~~~~---t~~eW----------  425 (466)
T KOG2532|consen  360 LAVILLTIAIGLSGFNISGFYKNHQDIAPQHA-GFVMGIINFVGALAGFIAPLLVGIIVTDN---TREEW----------  425 (466)
T ss_pred             HHHHHHHHHHHHcccchhhhHhhhhhccchHH-HHHHHHHHHHHHHHHHHHHHheeeEeCCC---CHHHH----------
Confidence            233444555444444444444  333 87766 89999999999999999998886543210   00123          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 011747          431 DYFYFLIAGLGGLNIVYFLYCA  452 (478)
Q Consensus       431 ~~~f~~la~l~~v~~vif~~~~  452 (478)
                      ...|++.+++.++..++|.+.+
T Consensus       426 ~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  426 RIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHHhchheeEee
Confidence            4578889999998888888774

>TIGR00897 2A0118 polyol permease family

Probab=98.23  E-value=0.00053  Score=71.16  Aligned_cols=73  Identities=10%  Similarity=0.175  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHH-HHhhceeeeEEeeccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI-LITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      +...+++...+.++|.+..-+...+.+.+.++++      +|.++.+++..+.++|. .+++.+.+++.+..||...+..
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            3445555556667777766666666677766543      58899999999999996 6788777788777886544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00896 CynX cyanate transporter

Probab=98.20  E-value=0.00014  Score=73.77  Aligned_cols=81  Identities=12%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec--cchhHhH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV--SWVIGFG  112 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~--g~~~~F~  112 (478)
                      +...++++..+.++|.|...+...+...|.+++       +|.++.+++..+.|+|..+++.+.+++.+..  +|+..|.
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            445666777788899988888888888776642       3778899999999999999988777776544  3888888


Q ss_pred             HHHHHHHHHH
Q 011747          113 IPTVLMIGAI  122 (478)
Q Consensus       113 i~~v~m~~~l  122 (478)
                      +.++..++..
T Consensus       159 ~~~~~~~~~~  168 (355)
T TIGR00896       159 WWALPALLAL  168 (355)
T ss_pred             HHHHHHHHHH
Confidence            7665544443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09669 putative symporter YagG; Provisional

Probab=98.19  E-value=0.00023  Score=74.88  Aligned_cols=63  Identities=11%  Similarity=0.176  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      +.+.++...++.++++....+...+.+.+.++       ++..|...|++.+..-+|..+|+.+++.+-+
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566688999999999999999988876       4567888999988888888888777765543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.17  E-value=0.00016  Score=76.99  Aligned_cols=62  Identities=18%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.++++...++.++++....+...++..+.+|       ++..|.+.|.+.+..-+|..+++.+.+.+-
T Consensus       323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566688899999999999999999877       455777999999988888888777766543

>PRK09952 shikimate transporter; Provisional

Probab=98.15  E-value=0.001  Score=69.93  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE--------eeccchh
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVI  109 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~--------~~~g~~~  109 (478)
                      .+.+.-.+.++|.|+.-|...++..|.++++      +|....+....+.++|.+++..+..++.        +.+||+.
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~  200 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI  200 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence            3555567789999999999899999887754      3566677788888888888765444332        2579999


Q ss_pred             HhHHHHHHHHH
Q 011747          110 GFGIPTVLMIG  120 (478)
Q Consensus       110 ~F~i~~v~m~~  120 (478)
                      .|.+.++..++
T Consensus       201 ~f~~~~~~~l~  211 (438)
T PRK09952        201 PFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHH
Confidence            99987765433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.14  E-value=0.00044  Score=71.32  Aligned_cols=50  Identities=4%  Similarity=-0.073  Sum_probs=38.7

Q ss_pred             hhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHHH
Q 011747           77 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL  126 (478)
Q Consensus        77 ~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liifl  126 (478)
                      ..+-....++..+|.+++....+++.+++||+..|.+.++..++..+..+
T Consensus       132 ~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       132 AKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            44455566777899999988888888889999999998887776665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.09  E-value=0.00039  Score=72.95  Aligned_cols=73  Identities=12%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE--------Eeeccchh
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--------QDSVSWVI  109 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i--------~~~~g~~~  109 (478)
                      .+.++-.+.++|.|+.-|+..++..|.++++      +|.++..++..+.|+|..+++.+.+.+        .+++||+.
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            3456667888999998898899999999754      477788887777777766655443332        24689999


Q ss_pred             HhHHHHH
Q 011747          110 GFGIPTV  116 (478)
Q Consensus       110 ~F~i~~v  116 (478)
                      .|.+.++
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9987543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.07  E-value=0.00067  Score=68.21  Aligned_cols=90  Identities=9%  Similarity=-0.072  Sum_probs=67.7

Q ss_pred             CCCchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe------
Q 011747           30 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD------  103 (478)
Q Consensus        30 ~~~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~------  103 (478)
                      ++...+.+.+.+++.+++.|.+...+..++++++.-+++      ++.+..|+.-.+..+|++++|++.+.+-.      
T Consensus         4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~   77 (310)
T TIGR01272         4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL   77 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence            344467899999999999999999999999999988654      25666778788888999999988765431      


Q ss_pred             ----------eccchhHhHHHHHHHHHHHHHH
Q 011747          104 ----------SVSWVIGFGIPTVLMIGAIILF  125 (478)
Q Consensus       104 ----------~~g~~~~F~i~~v~m~~~liif  125 (478)
                                ..+|++.|.+-++...+..+++
T Consensus        78 ~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        78 SMQVATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1478889985444444433343

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.05  E-value=0.0022  Score=65.96  Aligned_cols=88  Identities=13%  Similarity=0.181  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC  392 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l  392 (478)
                      .-.+|...+.+++....+...            .-+.+-+.+..+++|+|--+..+..++..-+.++++..|+.||+|-.
T Consensus       277 ~a~~G~~~~~~~f~lii~a~~------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGa  344 (403)
T PF03209_consen  277 TAALGCLLGALAFALIILAGP------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGA  344 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHH
Confidence            334676777777654433321            12456677889999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhhccc
Q 011747          393 SFGFASYLSSLLITIVHGVT  412 (478)
Q Consensus       393 ~~a~g~~l~~~l~~~~~~~~  412 (478)
                      +.+++..++..+++...|..
T Consensus       345 aQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  345 AQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888776653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.03  E-value=0.00062  Score=71.08  Aligned_cols=85  Identities=14%  Similarity=0.054  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE------eeccch
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ------DSVSWV  108 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~------~~~g~~  108 (478)
                      +...++++-.+.++|.|..-|...+...+.++++      +|..+..++..+.++|..+++.+.+++.      +..||+
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr  168 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ  168 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence            4566777788999999998888888888888753      4778889999999999999988877664      247999


Q ss_pred             hHhHHHHHHHHHHHHHH
Q 011747          109 IGFGIPTVLMIGAIILF  125 (478)
Q Consensus       109 ~~F~i~~v~m~~~liif  125 (478)
                      +.|.+.++..++..++.
T Consensus       169 ~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       169 WLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999766655544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.87  E-value=0.0011  Score=69.30  Aligned_cols=81  Identities=20%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.+++++.+++.+..++.               -+.++++...++.|++|....|....++.+..|++.|+..+|++...
T Consensus        76 ~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  140 (412)
T TIGR02332        76 IAGIMVLWGIASTATMFA---------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA  140 (412)
T ss_pred             HHHHHHHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            466777777766655432               24567778889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhh
Q 011747          394 FGFASYLSSLLITIVH  409 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~~  409 (478)
                      .++|..++..+++...
T Consensus       141 ~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332       141 MPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988876553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.79  E-value=0.00067  Score=68.55  Aligned_cols=137  Identities=15%  Similarity=0.096  Sum_probs=93.7

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      +++.+...+..++..|+...+.    +|.++|       +-+.++.++.+++.+..+..               .+.+++
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~l~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~   85 (399)
T TIGR00893        32 GYVFSAFSWGYVVGQFPGGWLL----DRFGAR-------KTLAVFIVIWGVFTGLQAFA---------------GAYVSL   85 (399)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------cCHHHH
Confidence            3455666666666666666543    454321       12455666666655544332               256667


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY  432 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  432 (478)
                      +...++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+...+.+..      +|          .+
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~----------~~  149 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW----------QW  149 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc----------hH
Confidence            788899999999999999999999999999999999999999999999988877543211      22          34


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 011747          433 FYFLIAGLGGLNIVYFLYC  451 (478)
Q Consensus       433 ~f~~la~l~~v~~vif~~~  451 (478)
                      .|+..+++.++..++.+..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       150 AFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhe
Confidence            5566666666555544433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.75  E-value=0.0016  Score=65.16  Aligned_cols=132  Identities=17%  Similarity=0.257  Sum_probs=92.3

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+...+..|+...+.    +|++       +-+-+.+|.++.+++.+...+.               .+.++++
T Consensus        36 ~~~~~~~~~~~~~~~~~g~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~   89 (352)
T PF07690_consen   36 LLFSAFFLGSALFSPFAGYLS----DRFG-------RRRVLIIGLLLFALGSLLLAFA---------------SNFWLLL   89 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHS--------HHHHHHHHHHHHHHHHHHHHHH---------------CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHcC-------CeeeEeehhhhhhhHHHHhhhh---------------hhHHHHh
Confidence            344555555666666665543    4432       2224566777777774444322               1334677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF  433 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~  433 (478)
                      ...++.|+++....+....++.+..|++.|+..+|++.....+|..+++.+++...+.-      +|          .+.
T Consensus        90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~----------~~~  153 (352)
T PF07690_consen   90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW----------RWA  153 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH----------CCH
T ss_pred             hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc----------ccc
Confidence            88899999999999999999999999999999999999999999999998887664210      12          234


Q ss_pred             HHHHHHHHHHHHHH
Q 011747          434 YFLIAGLGGLNIVY  447 (478)
Q Consensus       434 f~~la~l~~v~~vi  447 (478)
                      |+..+++.++..++
T Consensus       154 ~~~~~~~~~~~~il  167 (352)
T PF07690_consen  154 FLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhh
Confidence            66677777766654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.67  E-value=0.0033  Score=64.94  Aligned_cols=109  Identities=12%  Similarity=0.095  Sum_probs=77.2

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+..++..++..++    .+|.+++       +-+.++.++.+++.+..+..               .+.++++
T Consensus        54 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~  107 (406)
T PRK11551         54 WAFSAGILGLLPGALLGGRL----ADRIGRK-------RILIVSVALFGLFSLATAQA---------------WDFPSLL  107 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------ccHHHHH
Confidence            34455555555566555543    3454321       23555666655554433321               3566777


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ...++.+++.-...+...+.+.+..|++.|+..+|++.....+|..+++.+....
T Consensus       108 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        108 VARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999888776544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.014  Score=62.54  Aligned_cols=85  Identities=13%  Similarity=0.072  Sum_probs=68.9

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE------eeccc
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ------DSVSW  107 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~------~~~g~  107 (478)
                      .+.+.+.+--.++++-.+..-|+.....|.-|+++      ++..-+.++|.+.++|..+|.+++..+.      ...||
T Consensus       132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            34566666678889999999999999999999876      3677788999999999999998877752      35899


Q ss_pred             hhHhHHHHHHHHHHHHH
Q 011747          108 VIGFGIPTVLMIGAIIL  124 (478)
Q Consensus       108 ~~~F~i~~v~m~~~lii  124 (478)
                      ++.|.+.++.+++..++
T Consensus       206 ~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  206 RWLFIIEGVITLVLGIV  222 (495)
T ss_pred             eeehhHHHHHHHHHHhe
Confidence            99999988776665554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.61  E-value=0.0031  Score=64.10  Aligned_cols=110  Identities=12%  Similarity=0.099  Sum_probs=78.6

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      +..+...+..++..|+...+    .+|.++       -+-+.+|.++.+++.+..+..               -+.++++
T Consensus        44 ~~~~~~~~~~~~~~~~~g~l----~d~~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~   97 (385)
T TIGR00710        44 MTLTLYLLGFAAGQLLWGPL----SDRYGR-------RPVLLLGLFIFALSSLGLALS---------------NNIETLL   97 (385)
T ss_pred             HHHHHHHHHHHHHHHhhhhH----HHhcCC-------hHHHHHHHHHHHHHHHHHHHH---------------ccHHHHH
Confidence            34444555555555555543    344432       223556776766666554332               2455677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+++...
T Consensus        98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        98 VLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999998888877554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.58  E-value=0.009  Score=62.69  Aligned_cols=109  Identities=15%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP  354 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~  354 (478)
                      +.+...+...+..|+..++    ..|.+.       -+=+.+|+++.+++.+..+..               -+.+.++.
T Consensus        63 ~~~~~~~~~~~~~~~~G~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~  116 (434)
T PRK11663         63 LATLFYITYGVSKFVSGIV----SDRSNA-------RYFMGIGLIATGIINILFGFS---------------SSLWAFAL  116 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHH----HhhcCC-------chhHHHHHHHHHHHHHHHHHH---------------hHHHHHHH
Confidence            3344444555555555543    345432       123567777777766544432               23444556


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ..++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.
T Consensus       117 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  171 (434)
T PRK11663        117 LWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA  171 (434)
T ss_pred             HHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899998889999999999999999999999999999999999988776554

>PRK03545 putative arabinose transporter; Provisional

Probab=97.57  E-value=0.0045  Score=63.74  Aligned_cols=83  Identities=19%  Similarity=0.062  Sum_probs=67.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747          312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF  391 (478)
Q Consensus       312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~  391 (478)
                      +-+.+++++.+++.+..+..               .+.++++...+++|+++....+....++.+..|++.|+..+|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~  139 (390)
T PRK03545         75 KLLIGLFVLFIASHVLSALA---------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLA  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHH
Confidence            44566777777776554432               346667777889999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhh
Q 011747          392 CSFGFASYLSSLLITIVH  409 (478)
Q Consensus       392 l~~a~g~~l~~~l~~~~~  409 (478)
                      ...++|..+++.++....
T Consensus       140 ~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        140 TGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHHhhHHHHHH
Confidence            999999999988876553

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.57  E-value=0.0034  Score=64.73  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhcee--eeEEeeccchhHhH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL--VYIQDSVSWVIGFG  112 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~--~~i~~~~g~~~~F~  112 (478)
                      +.+.+.+-+.+-+.-.|.=-|...-.++.=|+.+      +|-+..++.-.+-|+|+.+.+.++  +++..+++|+.+|.
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            3444444445555555555577777777777754      488889999999999999999888  88888889999999


Q ss_pred             HHHHH-HHHHHHHHHhcc
Q 011747          113 IPTVL-MIGAIILFLVGK  129 (478)
Q Consensus       113 i~~v~-m~~~liifl~g~  129 (478)
                      .|++. ++++++.+..+|
T Consensus       190 ~pgiiaiival~~~~~~r  207 (448)
T COG2271         190 FPGIIAIIVALILLFLLR  207 (448)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            98664 555555555544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.56  E-value=0.0057  Score=63.91  Aligned_cols=85  Identities=16%  Similarity=0.160  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE-----------
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-----------  102 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~-----------  102 (478)
                      .+.+.+.++..+.++|.|...+..++.+.+..+++      ++.+..++.....++|+.+++.+.+.+.           
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~  165 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV  165 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence            45677888889999999999999999988876543      3556678888888999999987765441           


Q ss_pred             ---------------eeccchhHhHHHHHHHHHHHHH
Q 011747          103 ---------------DSVSWVIGFGIPTVLMIGAIIL  124 (478)
Q Consensus       103 ---------------~~~g~~~~F~i~~v~m~~~lii  124 (478)
                                     +..+|+..|.+.++..++..++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           1247999998766644444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.53  E-value=0.0035  Score=66.24  Aligned_cols=111  Identities=13%  Similarity=0.062  Sum_probs=81.9

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++..+...+..++..|+..++.    +|+++       -+-+.+|.++.+++.+..+..               .+.+++
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l   93 (485)
T TIGR00711        40 QWVITSYMLANAISIPLTGWLA----KRFGT-------RRLFLISTFAFTLGSLLCGVA---------------PNLELM   93 (485)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHH----HHhCc-------HHHHHHHHHHHHHHHHHHhCc---------------CCHHHH
Confidence            4566666666677777666543    44422       123456666666655543321               355667


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +...+++|++.....+....++.+..|++.|+..+|++.....+|..+++.+++.+.
T Consensus        94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            788899999999999999999999999999999999999999999999888876554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.52  E-value=0.004  Score=62.47  Aligned_cols=115  Identities=10%  Similarity=0.060  Sum_probs=82.4

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+..++..|+...+.    +|+++       -+-+.++.++.+++.+........          ...+.+++.
T Consensus        38 ~~~~~~~~~~~i~~~~~G~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   96 (365)
T TIGR00900        38 LAALAGMLPYVVLSPIAGALA----DRYDR-------KKVMIGADLIRAVLVAVLPFVALL----------GGLNIWQVY   96 (365)
T ss_pred             HHHHHHHHHHHHHHHhhhHHH----Hhhch-------hHHHHHHHHHHHHHHHHHHHHHHc----------CCCcHHHHH
Confidence            455556666666676666543    44432       122445555555555544443321          014677778


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ...++.+++..+..+...+++.+..|++.|+..+|++.....+|..+++.+++...
T Consensus        97 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        97 VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999988877654

>PRK11462 putative transporter; Provisional

Probab=97.51  E-value=0.011  Score=62.89  Aligned_cols=82  Identities=11%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe-------eccchhHh
Q 011747           39 LVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-------SVSWVIGF  111 (478)
Q Consensus        39 ~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~-------~~g~~~~F  111 (478)
                      +++...+..++.-++--.-.+++++.-++.+     +|.+..++...+.|+|.++++.+...+.+       ..||....
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~  186 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGI  186 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence            3333344455666666666688887776543     58889999999999998777654322111       13566655


Q ss_pred             HHHHHHHHHHHHHH
Q 011747          112 GIPTVLMIGAIILF  125 (478)
Q Consensus       112 ~i~~v~m~~~liif  125 (478)
                      .+-++..+++..+.
T Consensus       187 ~i~~ii~~i~~~i~  200 (460)
T PRK11462        187 AVLSVVAFMMLAFC  200 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555444444443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.50  E-value=0.012  Score=63.09  Aligned_cols=112  Identities=11%  Similarity=0.031  Sum_probs=82.0

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      +|..+...+...+++|+..++.    .|+++       -+-+.+|.++.+++.+..+..               -|.+++
T Consensus        44 ~~~~~~~~l~~~~~~~~~G~l~----D~~Gr-------k~~l~~~~~~~~~~~~~~~~a---------------~~~~~l   97 (495)
T PRK14995         44 LWIIDIYSLVMAGMVLPMGALG----DRIGF-------KRLLMLGGTLFGLASLAAAFS---------------PTASWL   97 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhcc-------HHHHHHHHHHHHHHHHHHHHc---------------CCHHHH
Confidence            4555555666666777666544    44432       234566777777766655432               356667


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhh-cChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQ-FPDHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~-aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      +...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+++.+.+
T Consensus        98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7888999999999999888888676 578999999999999999999999999876653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.50  E-value=0.0016  Score=68.97  Aligned_cols=87  Identities=14%  Similarity=0.034  Sum_probs=68.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747          312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF  391 (478)
Q Consensus       312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~  391 (478)
                      +-+.+++++.+++.+..+.....          ...+.+.++...++.|++|-...|.....+.+..|++.||..+|++.
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~  164 (467)
T PRK09556         95 QFLPFLLILSAICMLGFGASLGS----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN  164 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence            34677777777766555543210          12456677788899999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHh
Q 011747          392 CSFGFASYLSSLLITIV  408 (478)
Q Consensus       392 l~~a~g~~l~~~l~~~~  408 (478)
                      ....+|..+++.+....
T Consensus       165 ~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        165 ISHNLGGAGAGGVALWG  181 (467)
T ss_pred             cccchhhhHHHHHHHHH
Confidence            99999999998876533

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.0001  Score=76.41  Aligned_cols=137  Identities=17%  Similarity=0.261  Sum_probs=98.7

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH-
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA-  353 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv-  353 (478)
                      +|..-.+.-+++.|++..+-    .|+       ++.+-|++|.++=+++++..++.                +-+||+ 
T Consensus        73 l~~vf~v~~~i~sPl~gyLa----dry-------NR~~v~~vG~~iW~~Av~~~~fs----------------~~Fwq~~  125 (493)
T KOG1330|consen   73 LQTVFIVVFMIASPLFGYLA----DRY-------NRKRVIAVGIFIWTLAVFASGFS----------------NHFWQVL  125 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHH----hhc-------CcceEEeeHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence            44444445556777777643    343       33456889988888887655543                345655 


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF  433 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~  433 (478)
                      ..=-+.|+||.-.+|+.-+++.+..|+..||+++|+|+++.-+|+.+|...++.+.+.+     ..|          .+=
T Consensus       126 l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~W----------r~a  190 (493)
T KOG1330|consen  126 LCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWW----------RWA  190 (493)
T ss_pred             HHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cce----------EEE
Confidence            56789999999999999999999999999999999999999999999888877666543     114          123


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 011747          434 YFLIAGLGGLNIVYFLYCAR  453 (478)
Q Consensus       434 f~~la~l~~v~~vif~~~~~  453 (478)
                      |+.-|+++++.+++.+++.+
T Consensus       191 f~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  191 FRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             EEeehHHHHHHHHHHHhhcc
Confidence            56677777776665554433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.49  E-value=0.05  Score=58.13  Aligned_cols=63  Identities=19%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT  412 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~  412 (478)
                      .-+|.  .-++.|+.---..+..=+++.+..|++..+...|+|-++.=.++.+|+.+.+++.+.+
T Consensus       381 ~~f~~--~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t  443 (477)
T PF11700_consen  381 WEFWV--LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT  443 (477)
T ss_pred             HHHHH--HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33553  3356677766778888899999999999999999999999999999999998887653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.46  E-value=0.007  Score=61.85  Aligned_cols=111  Identities=8%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++..++..+...+..|+...+.    .|.++       -+-+.++.++.+++.+..++.               .+.+++
T Consensus        50 g~~~~~~~~~~~~~~~~~G~l~----Dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l  103 (405)
T TIGR00891        50 ASLISAALISRWFGALMFGLWG----DRYGR-------RLPMVTSIVLFSAGTLACGFA---------------PGYITM  103 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhcc-------HHHHHHHHHHHHHHHHHHHHh---------------ccHHHH
Confidence            3455556666666666666543    45432       123455666655555443322               245566


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ....++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999999999999999988876554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.42  E-value=0.0016  Score=65.58  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=77.2

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+...+..|+..++    .+|.+++       +-+.+|.++.+++.+..+..               .+.++++
T Consensus        34 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~   87 (379)
T TIGR00881        34 LLLSSFSIAYGISKFVMGSV----SDRSNPR-------VFLPIGLILCAIVNLFFGFS---------------TSLWVMA   87 (379)
T ss_pred             HHHHHHHHHHHhhhhhhhHH----HHhhCCe-------ehhHHHHHHHHHHHHHHHHh---------------hhHHHHH
Confidence            34455555555555555543    3454321       23566777777666655433               2455667


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHH-HHHHHh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSS-LLITIV  408 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~-~l~~~~  408 (478)
                      ...++.+++.-+..+.....+.+..|++.|+..+|++.....+|..+++ .+....
T Consensus        88 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (379)
T TIGR00881        88 ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI  143 (379)
T ss_pred             HHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999988 344433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.42  E-value=0.0071  Score=62.19  Aligned_cols=108  Identities=11%  Similarity=0.102  Sum_probs=75.1

Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747          276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ  355 (478)
Q Consensus       276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~  355 (478)
                      .++..+..++..|+..++.    .|.++|       +-+.+|.++.+++.+.....               .+.++++..
T Consensus        44 ~~~~~~~~~~~~~~~G~l~----Dr~g~r-------~~l~~~~~~~~i~~~~~~~~---------------~~~~~~~~~   97 (392)
T PRK10473         44 FSVYLAGMAAAMLFAGKIA----DRSGRK-------PVAIPGAALFIIASLLCSLA---------------ETSSLFLAG   97 (392)
T ss_pred             HHHHHHHHHHHHHhHhHHH----HHhCCh-------HHHHHHHHHHHHHHHHHHHh---------------CcHHHHHHH
Confidence            3444444555566666544    344321       12445666666655543321               245666777


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .++++++..+..+.....+.+..|++.|+..+|++.....+|..+++.++....
T Consensus        98 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         98 RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999888888888887776553

>TIGR00895 2A0115 benzoate transport

Probab=97.40  E-value=0.0023  Score=65.01  Aligned_cols=81  Identities=14%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.+|.++.+++.+.....               .+.++++...++.+++.-...+.....+.+..|++.|+..+|++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  149 (398)
T TIGR00895        85 LLWSILLFSVFTLLCALA---------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG  149 (398)
T ss_pred             HHHHHHHHHHHHHHHHHc---------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence            455666666655544322               24556677889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhh
Q 011747          394 FGFASYLSSLLITIVH  409 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~~  409 (478)
                      ..+|..+++.+.+...
T Consensus       150 ~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       150 YPIGAAVGGFLAGWLI  165 (398)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988876554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.39  E-value=0.022  Score=59.08  Aligned_cols=108  Identities=11%  Similarity=0.032  Sum_probs=80.6

Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747          276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ  355 (478)
Q Consensus       276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~  355 (478)
                      .+...+...+..|+...+    ..|.+       +-+-+.+++++.+++.+..+..               .+.++++..
T Consensus        61 ~~~~~~~~~~~~~~~g~l----~Dr~g-------rr~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~  114 (394)
T PRK10213         61 VTVTAFVAMFASLFITQT----IQATD-------RRYVVILFAVLLTLSCLLVSFA---------------NSFSLLLIG  114 (394)
T ss_pred             HHHHHHHHHHHHHHHHHH----hcccC-------cHHHHHHHHHHHHHHHHHHHHH---------------ChHHHHHHH
Confidence            345555666666655543    34442       2234567777777766554332               356677788


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .++.|++.-...|...+.+.+..|++.|+..+|++....++|..+++.+++...
T Consensus       115 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        115 RACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999998887664

>PRK10133 L-fucose transporter; Provisional

Probab=97.39  E-value=0.017  Score=60.83  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceee
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV   99 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~   99 (478)
                      .+...+.++..+.++|.|...+..++++.|..+++      ++....+++.....+|..+++.+.+
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999998754322      2333466666667788887775543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.37  E-value=0.0064  Score=64.14  Aligned_cols=86  Identities=17%  Similarity=0.067  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHH
Q 011747           37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV  116 (478)
Q Consensus        37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v  116 (478)
                      ....+.+.+..+|.....-..-+++.+.-++++.    .+...=++.|.+.++|++++..+.+++.++.+++..|.++++
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~  162 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA  162 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence            3444556677788877777777777777665432    255556788999999999999899999888999999999877


Q ss_pred             HHHHHHHHHH
Q 011747          117 LMIGAIILFL  126 (478)
Q Consensus       117 ~m~~~liifl  126 (478)
                      ...+..+..+
T Consensus       163 ~~~l~~~~~~  172 (433)
T PF03092_consen  163 LPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHHH
Confidence            7666655433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.34  E-value=0.014  Score=60.90  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC  392 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l  392 (478)
                      -+.+|+++.+++.+..+..               .+.++++..-+++|+++.+..+.......+.-|++.++..+|++..
T Consensus        83 ~l~~~~~~~~~~~~~~~~a---------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (413)
T PRK15403         83 VLITGALIFTLACAATLFT---------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITS  147 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3556666666655444322               3566777888999999988777777777788899999999999999


Q ss_pred             HhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHH
Q 011747          393 SFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVY  447 (478)
Q Consensus       393 ~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vi  447 (478)
                      ...+|..+++.+++...+.      .+|          .+-|+..+++.++..+.
T Consensus       148 ~~~~~~~~g~~lg~~l~~~------~gw----------~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        148 IVLVAPIIGPLSGAALMHF------VHW----------KVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHh------cCH----------HHHHHHHHHHHHHHHHH
Confidence            9999999988887655421      123          34556666666655543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.32  E-value=0.018  Score=59.31  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP  354 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~  354 (478)
                      ..++..+...+..|+..++.    .|.++       -+-+.++.++.+++.+.....               .+.++++.
T Consensus        59 ~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  112 (408)
T PRK09874         59 VFSITFLFSAIASPFWGGLA----DRKGR-------KIMLLRSALGMGIVMVLMGLA---------------QNIWQFLI  112 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----hhhCc-------HHHHHHHHHHHHHHHHHHHHH---------------hhHHHHHH
Confidence            44455555666666665543    44432       122445555555555443321               34566777


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ..++.+++..+ .+...+.+.+..|++.|+..+|++.....+|..+++.+.+...
T Consensus       113 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        113 LRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             HHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888665 4667788889999999999999999988999888888877554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.31  E-value=0.0023  Score=67.67  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.+++++.+++.+......             ..+.++++..-+++|++|-...|.....+.+..|++.|+..+|++...
T Consensus       109 l~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894       109 IGIGMFLSSVISIVIPWAA-------------GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHH-------------HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4566666666554433221             134566778889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhh
Q 011747          394 FGFASYLSSLLITIVH  409 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~~  409 (478)
                      ..+|..+++.+.+...
T Consensus       176 ~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       176 FQLGTFIFLPISGWLC  191 (465)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998887654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.30  E-value=0.018  Score=48.87  Aligned_cols=62  Identities=18%  Similarity=0.317  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.+...
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            34556677899999999999999999999999999999999999999999999988876554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.013  Score=60.52  Aligned_cols=138  Identities=17%  Similarity=0.177  Sum_probs=104.5

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhH-HHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG-IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW  351 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~-iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w  351 (478)
                      +++-+...+...+..|++..+.    .|+.        .||.- ..+.+..+|-+..++.               -|.+.
T Consensus        51 G~lis~yAl~~ai~ap~l~~lt----~r~~--------Rr~lLl~~l~lFi~~n~l~alA---------------p~f~~  103 (394)
T COG2814          51 GQLITAYALGVALGAPLLALLT----GRLE--------RRRLLLGLLALFIVSNLLSALA---------------PSFAV  103 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----cccc--------hHHHHHHHHHHHHHHHHHHHHh---------------ccHHH
Confidence            5677888899999999887654    3332        12333 3344555555554443               45667


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchH
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD  431 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~  431 (478)
                      ++..=++.+++--...+++.+.+.+.+|++.|+..+|+-+....++..+|..++.++.+.-      +|          -
T Consensus       104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----------R  167 (394)
T COG2814         104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW----------R  167 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH----------H
Confidence            8888899999999999999999999999999999999999999999999988888776431      34          2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 011747          432 YFYFLIAGLGGLNIVYFLYCAR  453 (478)
Q Consensus       432 ~~f~~la~l~~v~~vif~~~~~  453 (478)
                      .-|+.+++++++..+..+...+
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Confidence            3577888888888777777766

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.28  E-value=0.0048  Score=64.18  Aligned_cols=109  Identities=15%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+...+..|+...+.    +|.++       .+-+.+|.++.+++.+.......            ..+.++++
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~----d~~gr-------r~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  131 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLS----DRFGR-------KKSLLIIALLFVIGAILMGLAAF------------ALSVEMLI  131 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhh----hhhhh-------HHHHHHHHHHHHHHHHHHHHhcc------------ccchHHHH
Confidence            344455555556666665543    44421       22355666666666555443321            13445677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI  405 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~  405 (478)
                      ...++.|+++....+....++.+..|++.|+..+|++.....+|..++..+.
T Consensus       132 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       132 VGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999998887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.25  E-value=0.027  Score=58.50  Aligned_cols=81  Identities=17%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.+|.++.+++++.....               -+.|+++...+++++++....|...+.+.+.+|++.++..+|+....
T Consensus        79 l~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  143 (400)
T PRK11646         79 IVTGMLMRAAGFATMAIA---------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQ  143 (400)
T ss_pred             HHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            456777777776654332               24667778889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhh
Q 011747          394 FGFASYLSSLLITIVH  409 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~~  409 (478)
                      ..+|..+|+.+++...
T Consensus       144 ~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        144 DSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988887664

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.25  E-value=0.018  Score=59.80  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=79.8

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      +..+...+..++..|+..++.    +|.++       -+-+.+|.++.+++.+..++.               .+.++++
T Consensus        57 ~~~~~~~~~~~l~~~~~g~l~----dr~g~-------r~~l~~~~~~~~~~~~~~~~~---------------~~~~~l~  110 (426)
T PRK12307         57 FLATAAFIGRPFGGALFGLLA----DKFGR-------KPLMMWSIVAYSVGTGLSGLA---------------SGVIMLT  110 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhCC-------hHHHHHHHHHHHHHHHHHHHH---------------hHHHHHH
Confidence            344555555566666555443    45432       223556777777766554433               2456677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ...++.|+++-...+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus       111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307        111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence            78899999999999999999999999999999999999999999999887765543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.25  E-value=0.022  Score=58.52  Aligned_cols=111  Identities=13%  Similarity=0.029  Sum_probs=81.3

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++..+.+.+..++..|+..++.    +|.++       -+-+.+|.++.+++.+..+..               .+.+++
T Consensus        41 g~~~s~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~l~~~~---------------~~~~~l   94 (382)
T PRK10091         41 GHMISYYALGVVVGAPIIALFS----SRYSL-------KHILLFLVALCVIGNAMFTLS---------------SSYLML   94 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----ccCcc-------HHHHHHHHHHHHHHHHHHHHh---------------CcHHHH
Confidence            3455666677777777666543    44432       234566777777766654432               346777


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +...++.|+++-...+.....+.+..|++.|+..+|++.....+|..++..+++.+.
T Consensus        95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            778899999999999998889999999999999999999888899888877776554

>PRK10054 putative transporter; Provisional

Probab=97.22  E-value=0.017  Score=59.93  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=75.5

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++..++..+.-++..|+..++.    .|.++|       +-+.+|+++.+++++..++..               +.+..
T Consensus        46 g~~~s~~~~~~~~~~~~~G~l~----Dr~g~k-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~   99 (395)
T PRK10054         46 GYAMTIALTIGVVFSLGFGILA----DKFDKK-------RYMLLAITAFASGFIAIPLVN---------------NVTLV   99 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hhcCcc-------hhHHHHHHHHHHHHHHHHHHh---------------HHHHH
Confidence            3344555555566666666543    444321       235567777777766554332               23334


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +..+.+.+.+.....+.....+.+..|++.|+..+|+......+|..+++.+++...
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054        100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567777777778888888899999999999999999999999999988887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.17  E-value=0.072  Score=56.51  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC  392 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l  392 (478)
                      -+.++++.-++..+..++.               -|.+.+...-++.|++|.... +...++++-.|++.|+.++|++..
T Consensus        94 vL~l~~l~Wsl~t~L~~fa---------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~s  157 (511)
T TIGR00806        94 VLVLQALSFVCVWLLLLLG---------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRA  157 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHH
Confidence            3455666555555554443               246667788899999999999 999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHh
Q 011747          393 SFGFASYLSSLLITIV  408 (478)
Q Consensus       393 ~~a~g~~l~~~l~~~~  408 (478)
                      +..+|..+++.++++.
T Consensus       158 g~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       158 AVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999874

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.16  E-value=0.015  Score=59.22  Aligned_cols=108  Identities=15%  Similarity=0.103  Sum_probs=76.2

Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747          276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ  355 (478)
Q Consensus       276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~  355 (478)
                      .++..+...+..|+...+    .+|.+       +.+-+.+|.++.+++.+.....               .+.+.++..
T Consensus        32 ~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~   85 (377)
T PRK11102         32 LSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA---------------QTIDQLIYM   85 (377)
T ss_pred             HHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------ccHHHHHHH
Confidence            344444455555554443    34442       1234566777777766655432               234456677


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .++.+++.....+...+++.+..|++.|+..+|++.....+|..+++.+.+...
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999888876554

>PRK10504 putative transporter; Provisional

Probab=97.15  E-value=0.038  Score=58.39  Aligned_cols=62  Identities=15%  Similarity=-0.009  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.++++...+++|++.-...|.....+.+..|++.++..+|+......+|..+++.+++.+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            45566677899999999999999999999999999999999999988999998888877654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.14  E-value=0.0045  Score=62.63  Aligned_cols=77  Identities=16%  Similarity=0.143  Sum_probs=53.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe----------e
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD----------S  104 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~----------~  104 (478)
                      +.+.++++-.+.++|.+.+ +...+.++|.++++      +|..+.+++....|+|..+++.+.+.+..          .
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            5666777777888887666 44567888888654      47788888888888888877766554432          3


Q ss_pred             ccchhHh-HHHHHHH
Q 011747          105 VSWVIGF-GIPTVLM  118 (478)
Q Consensus       105 ~g~~~~F-~i~~v~m  118 (478)
                      .+|++.| .+.++..
T Consensus       163 ~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       163 LAWGWAFVIVPAGIL  177 (366)
T ss_pred             ccccchhHHHHHHHH
Confidence            4899999 4433333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.0021  Score=65.65  Aligned_cols=146  Identities=14%  Similarity=0.145  Sum_probs=110.2

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      +++-..-.++-++..|++..+.    .|.+.+       --|.+|++++..+-++.++.+.               .+.+
T Consensus       109 G~LFaskA~~qllvnp~~G~l~----~~iGy~-------ipm~~Gl~vmf~sTilFafg~s---------------y~~l  162 (464)
T KOG3764|consen  109 GLLFASKALVQLLVNPFFGNLI----DRIGYK-------IPMVAGLFVMFLSTILFAFGNS---------------YPML  162 (464)
T ss_pred             hHHHHHHHHHHHHhcccchhhH----HHhccc-------cHHHHHHHHHHHHHHHHHHcch---------------hHHH
Confidence            3444445555566666666544    344321       2378999999999888877653               3347


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhh-HHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchH
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHM-KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD  431 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~-ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~  431 (478)
                      +..-.++|+|..+++..|++...+.-|+.- ||..||.-+-..++|..+|+..++.+++...               ...
T Consensus       163 ~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---------------k~a  227 (464)
T KOG3764|consen  163 FVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---------------KSA  227 (464)
T ss_pred             HHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---------------CcC
Confidence            788899999999999999999999999966 6999999999999999999999887776421               111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccC
Q 011747          432 YFYFLIAGLGGLNIVYFLYCARRYRYKSG  460 (478)
Q Consensus       432 ~~f~~la~l~~v~~vif~~~~~~~~~~~~  460 (478)
                       =|.+++.++++...+-+++...++..++
T Consensus       228 -PFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  228 -PFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             -cHHHHHHHHHHHHHHHHheeCccccCcc
Confidence             2789999999999888887776665553

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.12  E-value=0.046  Score=57.67  Aligned_cols=81  Identities=17%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC  392 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l  392 (478)
                      =+.+|.++.+++.+..++...           ..-+.++++...++.++++....|.....+.+..|++.|+..+|++..
T Consensus        95 ~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  163 (452)
T PRK11273         95 FLPAGLILAAAVMLFMGFVPW-----------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC  163 (452)
T ss_pred             hHHHHHHHHHHHHHHHHhhhc-----------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHH
Confidence            356677777777765554421           012455667778899999998888777888889999999999999998


Q ss_pred             HhhHHHHHHHHH
Q 011747          393 SFGFASYLSSLL  404 (478)
Q Consensus       393 ~~a~g~~l~~~l  404 (478)
                      ...+|..+.+.+
T Consensus       164 ~~~~g~~~~~~l  175 (452)
T PRK11273        164 AHNVGGGLPPLL  175 (452)
T ss_pred             HHHhhhhHHHHH
Confidence            888887554433

>PRK03699 putative transporter; Provisional

Probab=97.10  E-value=0.045  Score=56.46  Aligned_cols=80  Identities=9%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.++.++.+++.+..++.               -+.++++...++.++++....+.....+.+..|++.|+..++.....
T Consensus        75 ~~~~~~~~~i~~~l~~~~---------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  139 (394)
T PRK03699         75 LIFGFALMILAVAGLMFS---------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSF  139 (394)
T ss_pred             HHHHHHHHHHHHHHHHHc---------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHH
Confidence            455666666665544332               24556677889999999999998999999999999999999998888


Q ss_pred             hhHHHHHHHHHHHHh
Q 011747          394 FGFASYLSSLLITIV  408 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~  408 (478)
                      .++|..+++.+.+..
T Consensus       140 ~~~g~~~~~~~~~~l  154 (394)
T PRK03699        140 FSMAGMIFPIIAAYL  154 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888887776543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.10  E-value=0.005  Score=68.11  Aligned_cols=126  Identities=15%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhh--hhh-------------
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG--RRA-------------  337 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~--~~~-------------  337 (478)
                      +++.+.+-+.-.+.+++..++    ..|.       ...+-+++|+++.+++.+..++.+..  ++.             
T Consensus        71 G~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~  139 (633)
T TIGR00805        71 GLINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS  139 (633)
T ss_pred             eeeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence            334555555555555555443    2343       23456899999999998887765421  000             


Q ss_pred             ----hhccC--------------C-CC--cchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhH
Q 011747          338 ----SAHLH--------------P-MS--QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF  396 (478)
Q Consensus       338 ----~~~~~--------------g-~~--~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~  396 (478)
                          .+..+              . ..  ....+.++..-+++|+|+....+.+..++.+..|++.++.++|++.....+
T Consensus       140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i  219 (633)
T TIGR00805       140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF  219 (633)
T ss_pred             cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence                00000              0 00  112344556779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 011747          397 ASYLSSLLITIVH  409 (478)
Q Consensus       397 g~~l~~~l~~~~~  409 (478)
                      |..+|..+++.+.
T Consensus       220 G~~lG~llgg~l~  232 (633)
T TIGR00805       220 GPAFGYLLGSFCL  232 (633)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999988887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.015  Score=62.14  Aligned_cols=95  Identities=12%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDA  427 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  427 (478)
                      |.+-++..-+++|+.|-...|..-.+...-=.++.+++.||+|+.+.++|+.+|+.+...+.......+..+|       
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-------  205 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-------  205 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence            4455667779999999999999999999999999999999999999999999999998765432211112234       


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhh
Q 011747          428 GRLDYFYFLIAGLGGLNIVYFLYCA  452 (478)
Q Consensus       428 ~~~~~~f~~la~l~~v~~vif~~~~  452 (478)
                         .+.|..-|+++++.+++.++.-
T Consensus       206 ---~~~FiI~G~i~~~~gi~~f~~l  227 (495)
T KOG2533|consen  206 ---RWLFIIEGVITLVLGIVVFFFL  227 (495)
T ss_pred             ---eeehhHHHHHHHHHHheEEEEe
Confidence               4678888888888876555433

>PTZ00207 hypothetical protein; Provisional

Probab=97.09  E-value=0.039  Score=60.36  Aligned_cols=116  Identities=13%  Similarity=0.118  Sum_probs=82.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747          312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF  391 (478)
Q Consensus       312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~  391 (478)
                      +-+.+|.++.+++++..++...         +....+++.+....++.|+|+.+..+.....+.+..| +.||.++|++.
T Consensus        92 ~vllig~ll~~iG~ll~ala~~---------~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~  161 (591)
T PTZ00207         92 PIFVLSMTVFCLGTLLFALTFQ---------EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMK  161 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc---------ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHH
Confidence            3467888888888887766421         0012356667778899999999999999999988887 57899999999


Q ss_pred             HHhhHHHHHHHHHH-HHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011747          392 CSFGFASYLSSLLI-TIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY  455 (478)
Q Consensus       392 l~~a~g~~l~~~l~-~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~  455 (478)
                      ...++|..+.+.+. .++..        +          ...+|+.++++.++..++.+.+.+..
T Consensus       162 ~~~gLGsaI~~~l~~~l~~~--------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        162 TFTGLGSAILGSIQLAFFSD--------N----------TSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------h----------HHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            99999998644444 33321        1          23567777887777766666554444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.08  E-value=0.0069  Score=61.69  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +...-.+.+++-..+.+.-..++.+..|.+.||..+|+.....+++..+|+.+.+...
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            4466688889999999999999999999999999999999999999999998886554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.03  E-value=0.076  Score=54.46  Aligned_cols=110  Identities=11%  Similarity=0.005  Sum_probs=79.9

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      +..+...+...+..|+..++.    +|.++       .+-+.+|.++.+++++..+..               -|.++++
T Consensus        45 ~~~s~~~l~~~~~~~~~g~l~----dr~g~-------k~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~   98 (381)
T PRK03633         45 VVSSSYFTGNLVGTLLAGYVI----KRIGF-------NRSYYLASLIFAAGCAGLGLM---------------VGFWSWL   98 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHh---------------ccHHHHH
Confidence            344555555566666555543    44432       223567777777776654432               2456677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+++.+.+...
T Consensus        99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         99 AWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            78899999999999988888889999999999999999999999999988886543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.99  E-value=0.009  Score=66.12  Aligned_cols=87  Identities=16%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec---------
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV---------  105 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~---------  105 (478)
                      ....++++-++.++|.|..-+...+++.|.++++      ++..++++++.+.++|..+|+++.+++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            4567778999999999999999999999988765      4888999999999999999998877665422         


Q ss_pred             -------------cchhHhHHHHHHHHHHHHHHHh
Q 011747          106 -------------SWVIGFGIPTVLMIGAIILFLV  127 (478)
Q Consensus       106 -------------g~~~~F~i~~v~m~~~liifl~  127 (478)
                                   +|+.+|.+.++..++..+.++.
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         3889999887766665554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.97  E-value=0.037  Score=57.27  Aligned_cols=110  Identities=9%  Similarity=0.100  Sum_probs=79.5

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++..+...+...+.+|+..++.    +|+++       -+=+.+|+.+.+++.+..++.+               +.+++
T Consensus        47 g~~~s~~~~~~~l~~~~~g~l~----dr~G~-------r~~l~~~~~l~~~~~~~~~~a~---------------~~~~l  100 (393)
T PRK09705         47 ALLTALPVVTMGGLALAGSWLH----QHVSE-------RRSVAISLLLIAVGALMRELYP---------------QSALL  100 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHCc---------------chHHH
Confidence            3344555556666666665543    44432       2346788888888887766542               34456


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +..-++.|+++....+...+.+.+..| +.|+.++|++......|..+++.+.....
T Consensus       101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705        101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677899999999999999999988887 66899999999888888888888776543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.97  E-value=0.04  Score=57.86  Aligned_cols=83  Identities=17%  Similarity=0.262  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.+|.++.+++.+..+....           ...+.+.+....++.++++....+...+.+.+..|++.|+..+|++...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~  162 (438)
T TIGR00712        94 LPAGLILSAAVMLLMGFVPW-----------ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA  162 (438)
T ss_pred             hHHHHHHHHHHHHHHhcccc-----------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence            45677777776655443321           0123444556678899999988888889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH
Q 011747          394 FGFASYLSSLLITI  407 (478)
Q Consensus       394 ~a~g~~l~~~l~~~  407 (478)
                      ..+|..+++.+...
T Consensus       163 ~~~g~~~~~~l~~~  176 (438)
T TIGR00712       163 HNIGGGIPPLLVLL  176 (438)
T ss_pred             HHhHhHHHHHHHHH
Confidence            99998888766543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.94  E-value=0.095  Score=52.90  Aligned_cols=109  Identities=11%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      +++.+...+..++..|+...+.    .|.++       -+-+.+|.++.+++.+..+...              .+.+++
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~   94 (366)
T TIGR00886        40 GNLVAVPVLAGAVLRIILGFLV----DKFGP-------RYTTTLSLLLLAIPCLWAGLAV--------------QSYSVL   94 (366)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHHh--------------hhHHHH
Confidence            3455556666666666666543    45432       1235677777777766554432              145666


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITI  407 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~  407 (478)
                      +...++++++.... +.....+.+..|++.|+..++++.....+|..+++.+...
T Consensus        95 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  148 (366)
T TIGR00886        95 LLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP  148 (366)
T ss_pred             HHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            77788899987654 5578899999999999999999987666776666655543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=96.92  E-value=0.068  Score=60.11  Aligned_cols=109  Identities=13%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+..++..++..++    ..|.++       .+-+.+++++.+++.+..++.               .+.++++
T Consensus       206 ~l~s~~~lG~iiG~li~G~L----sDR~GR-------R~~lii~lil~~i~~ll~afa---------------~s~~~ll  259 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGGL----ADKLGR-------KQCLLICLSVNGFFAFFSSFV---------------QGYGFFL  259 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHH---------------hhHHHHH
Confidence            34444555555555554443    345432       123455655555554443322               2456677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ...++.|++.-...|....++....|++.|+..++++...+++|..++..++..+
T Consensus       260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999998887766443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.90  E-value=0.081  Score=54.67  Aligned_cols=62  Identities=15%  Similarity=0.026  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.++++...++.+++..+..+.....+.+..|++.+...+++......+|..+++.+.+...
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677889999999888999999999999999988888887777777777777765543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.89  E-value=0.028  Score=56.51  Aligned_cols=134  Identities=18%  Similarity=0.155  Sum_probs=85.2

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      +..+...+...+..|+...+    .+|.++|       +-+.+|.++.+++.+..++..               +.+.+.
T Consensus        42 ~~~s~~~~~~~~~~~~~G~l----~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~   95 (377)
T TIGR00890        42 IWFTLLLIGLAMSMPVGGLL----ADKFGPR-------AVAMLGGILYGLGFTFYAIAD---------------SLAALY   95 (377)
T ss_pred             HHHHHHHHHHHHHhhhhHHH----HHHcCcc-------chhHHhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence            34445555555666665554    3455432       235667777777765554432               344556


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF  433 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~  433 (478)
                      ...++.|+++-...+.....+.+..|+ .|+.+++++....++|..+++.+.....+.      .+|          ...
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~----------~~~  158 (377)
T TIGR00890        96 LTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV----------PAA  158 (377)
T ss_pred             HHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH----------HHH
Confidence            677899999998888888888887875 589999999999999988766555433211      122          345


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011747          434 YFLIAGLGGLNIVYFLY  450 (478)
Q Consensus       434 f~~la~l~~v~~vif~~  450 (478)
                      |+..+++.++..+..+.
T Consensus       159 f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       159 FIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666665554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.88  E-value=0.017  Score=61.37  Aligned_cols=120  Identities=15%  Similarity=0.182  Sum_probs=86.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH
Q 011747          311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL  390 (478)
Q Consensus       311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~  390 (478)
                      .+-|.+|+.+-++=|+....++               |+|..+|.-+++++.-.+++.+..+++...||++++..++|+.
T Consensus       436 v~v~~lgLa~~~~Rf~~~S~L~---------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~  500 (618)
T KOG3762|consen  436 VNVMYLGLACNVGRFLYYSYLQ---------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLL  500 (618)
T ss_pred             cceeeehhhHHHHHHHHHHHhc---------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHH
Confidence            4456788887777777665543               5666778889999999999999999999999999999999887


Q ss_pred             HHH-hhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 011747          391 FCS-FGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI  461 (478)
Q Consensus       391 ~l~-~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~  461 (478)
                      -.. -++|.-+|+++++.+-..         +       ....+|+..++.+++..++++.+.+..+++...
T Consensus       501 ~g~f~GlG~g~GslIGG~~v~~---------f-------g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i  556 (618)
T KOG3762|consen  501 QGIFHGLGKGLGSLIGGFVVER---------F-------GARTTFRIFGIACLVTLALFISIQLLLKRRGFI  556 (618)
T ss_pred             HHHhcccCcchhhhhhhhhhee---------e-------hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence            644 355555555555443221         1       023467788888888888887776666655443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.88  E-value=0.1  Score=54.56  Aligned_cols=113  Identities=10%  Similarity=-0.007  Sum_probs=82.6

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      +++.+...+..++..|+..++.    +|.++       -+-+.+|+++.+++.+.......            ..+.+++
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l~----~r~G~-------r~~~~~g~~l~~~g~~l~~~~~~------------~~~~~~~   97 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIFM----KKLSY-------KAGILLGLFLYALGAFLFWPAAE------------IMNYTLF   97 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHHHh------------hccHHHH
Confidence            3455566666667776665543    55432       23467788887777655432211            1355667


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      +...++.|+|.-+..+....++.+.+|++.++..+++.....++|..+++.+...+
T Consensus        98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        98 LVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77789999999999999999999999999999999999999999999998887655

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03893 putative sialic acid transporter; Provisional

Probab=96.85  E-value=0.091  Score=55.75  Aligned_cols=81  Identities=14%  Similarity=0.304  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.++.++.+++.+..++.               -+.++++...++.|++.....+.....+.+..|++.|+..+|++...
T Consensus        88 ~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  152 (496)
T PRK03893         88 MVISIVLFSVGTLACGFA---------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG  152 (496)
T ss_pred             HHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            456666666666554432               24566777889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhh
Q 011747          394 FGFASYLSSLLITIVH  409 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~~  409 (478)
                      ..+|..+++.+...+.
T Consensus       153 ~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        153 FSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988887554

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.82  E-value=0.16  Score=54.35  Aligned_cols=107  Identities=14%  Similarity=0.246  Sum_probs=76.8

Q ss_pred             HHhHHHHHHHhhhcCCCCCCCchhh-hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 011747          289 FYDTVLVPALRKITKHEGGITLLQR-IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI  367 (478)
Q Consensus       289 l~~~i~~p~~~r~~~~~~~~s~l~k-i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~  367 (478)
                      +...+|-|+..|++..  .....++ +.++.++.+++....++...            ..+.+|+...+++.+++-....
T Consensus        60 ~~~~l~gpl~Dr~~~~--~~Grrr~~ll~~~i~~~~~~~~~a~~~~------------~~~l~~l~~~~~l~~~~~a~~~  125 (491)
T PRK11010         60 VFKFLWSPLMDRYTPP--FLGRRRGWLLATQLLLLVAIAAMGFLEP------------GTQLRWLAALAVVIAFCSASQD  125 (491)
T ss_pred             HHHHHHHHHHHccccc--CCCCchHHHHHHHHHHHHHHHHHHHcCC------------cchHHHHHHHHHHHHHHHHHHH
Confidence            4556677777765311  0111122 45666666666655544321            2457778888899999999999


Q ss_pred             hhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          368 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       368 ~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +..-+++.+..|++.|+..+|+......+|..+++.+...+.
T Consensus       126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010        126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987776554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.81  E-value=0.18  Score=52.69  Aligned_cols=89  Identities=8%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH-HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCC
Q 011747          347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL-FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDI  425 (478)
Q Consensus       347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~-~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~l  425 (478)
                      .+++|+++.=.+.++---+.-...+-+++++.|+++.++...+. .++.++|..+.+.+.+...+.             +
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-------------~  376 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-------------I  376 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-------------H
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-------------c
Confidence            56778888779999888899999999999999999998888885 477888888777666655431             0


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHh
Q 011747          426 DAGRLDYFYFLIAGLGGLNIVYFLYC  451 (478)
Q Consensus       426 n~~~~~~~f~~la~l~~v~~vif~~~  451 (478)
                        | ....|+.++++.++.+++=+..
T Consensus       377 --G-~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  377 --G-FQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             --H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --C-cHHHHHHHHHHHHHHHHHheee
Confidence              1 2235677777766555544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.80  E-value=0.1  Score=54.54  Aligned_cols=92  Identities=13%  Similarity=0.215  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH-hhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcch
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS-FGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL  430 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~-~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~  430 (478)
                      ++..-+++|+.-.+..+++..++.+.+|++.|+..||++... .++|..+|..+++...+.-.        .+..  -..
T Consensus       304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g--------~~~~--~~~  373 (400)
T PF03825_consen  304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG--------ARGM--FDW  373 (400)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc--------chhh--hhH
Confidence            333346899999999999999999999999999999998854 68888888888876553210        0000  012


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 011747          431 DYFYFLIAGLGGLNIVYFLYCAR  453 (478)
Q Consensus       431 ~~~f~~la~l~~v~~vif~~~~~  453 (478)
                      ..+|.+.+++.++..++|++..|
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Confidence            34666777777777777777643

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.78  E-value=0.042  Score=58.17  Aligned_cols=134  Identities=17%  Similarity=0.162  Sum_probs=79.9

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP  354 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~  354 (478)
                      ..++..+...+..|+..+    +..|+++|       +-+.+|+++.+++.+..+...               +.+.+..
T Consensus        59 ~~s~~~~~~~~~~~~~G~----l~dr~g~r-------~~l~~~~~~~~~~~~~~~~~~---------------~~~~l~~  112 (455)
T TIGR00892        59 ISSIMLAVLYAGGPISSI----LVNRFGCR-------PVVIAGGLLASLGMILASFSS---------------NVIELYL  112 (455)
T ss_pred             HHHHHHHHHHHhhHHHHH----HHHHcCch-------HHHHhhHHHHHHHHHHHHHhh---------------hHHHHHH
Confidence            334444444555565443    34555321       234556666666655443321               2222322


Q ss_pred             H-HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747          355 Q-LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF  433 (478)
Q Consensus       355 ~-y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~  433 (478)
                      . -++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+.+.+.+..      +|          ..-
T Consensus       113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----------r~~  175 (455)
T TIGR00892       113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----------RGS  175 (455)
T ss_pred             HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch----------HHH
Confidence            2 367788888776777777777676 68999999999999999998888776554311      23          345


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 011747          434 YFLIAGLGGLNIVYFLYC  451 (478)
Q Consensus       434 f~~la~l~~v~~vif~~~  451 (478)
                      |+..+++.++..+..+.+
T Consensus       176 f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       176 FLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            666777666655544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.77  E-value=0.059  Score=53.37  Aligned_cols=111  Identities=14%  Similarity=0.205  Sum_probs=81.7

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      +..+...+..++..|+...+.    +|.++|       +-+.+|.++.+++.+.....               -+.++.+
T Consensus        38 ~~~~~~~~~~~~~~~~~g~~~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~   91 (352)
T cd06174          38 LIVSAFSLGYALGSLLAGYLS----DRFGRR-------RVLLLGLLLFALGSLLLAFA---------------SSLWLLL   91 (352)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH----HHhCCc-------hhhHHHHHHHHHHHHHHHHh---------------ccHHHHH
Confidence            345555555666666665543    454321       13566777777766654433               2456677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      ...++.+++.-+..+....+..+..|++.|+..+|+......+|..+++.+.+.+.+
T Consensus        92 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999888876543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.73  E-value=0.0024  Score=69.50  Aligned_cols=213  Identities=20%  Similarity=0.111  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHH
Q 011747           39 LVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLM  118 (478)
Q Consensus        39 ~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m  118 (478)
                      .|+...+..-+ +..++|++++.|+++....  ....+..+|...|+.||+++++..+.            .|+++...+
T Consensus        62 ~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a~  126 (571)
T KOG1237|consen   62 TYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSAM  126 (571)
T ss_pred             HHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence            34444444555 8899999999999998632  12357888999999999999987644            677888877


Q ss_pred             HHHHHHHHhcccceeeeC-CCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhhhhh
Q 011747          119 IGAIILFLVGKKLYVLVE-PEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA  197 (478)
Q Consensus       119 ~~~liifl~g~~~~~~~~-p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  197 (478)
                      +.++..+-+   .+.... ...+|-+....++..++.........  .++                       .+++..+
T Consensus       127 ~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg--~r~-----------------------~~~~fGa  178 (571)
T KOG1237|consen  127 IPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGG--IRP-----------------------CLLAFGA  178 (571)
T ss_pred             hhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCC--CCC-----------------------cchhhcc
Confidence            777766544   111111 11122222333344444332110000  000                       1111111


Q ss_pred             hhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhcc-CCCCCcccCCcccc
Q 011747          198 MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNR-HLGPKFQIPPGTVG  276 (478)
Q Consensus       198 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~-~~~~g~~ip~~~~~  276 (478)
                      -.                  +++...++++.        ....+.|..++|..+.++.|+..++. +.. +|.+-.+..+
T Consensus       179 dQ------------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~  231 (571)
T KOG1237|consen  179 DQ------------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPT  231 (571)
T ss_pred             cc------------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHH
Confidence            00                  01111111211        22456888999999999999865553 333 7888899999


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 011747          277 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLV  331 (478)
Q Consensus       277 ~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~  331 (478)
                      ..|.+.+++|.|....+.++.       |   +--.+..+|-++.+++.-..+.+
T Consensus       232 ~~~~lai~iF~~g~~~y~~~~-------p---~gsp~t~i~~Vlvaa~~k~~~~~  276 (571)
T KOG1237|consen  232 VLNALAILIFLPGFPFYRYKK-------P---RGSPKTRIGQVLVAAAFKRKAVV  276 (571)
T ss_pred             HHHHHHHHHHHcCceeEEeeC-------C---CCCchhHHHHHHHHHHHHHhccC
Confidence            999999999998776654331       1   22268888999988888765433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.71  E-value=0.043  Score=57.90  Aligned_cols=119  Identities=10%  Similarity=0.029  Sum_probs=76.4

Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747          276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ  355 (478)
Q Consensus       276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~  355 (478)
                      .+...+..++.+++..++    ..|+++|       +-+.++.++.+++.+..+..+......  ..+ +.-.+++++..
T Consensus        61 ~s~~~ig~~~~~~~~G~l----~dr~Grr-------~~~~~~~~l~~i~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~  126 (479)
T PRK10077         61 VASALIGCIIGGALGGYC----SNRFGRR-------DSLKIAAVLFFISALGSAWPEFGFTSI--GPD-NTGYVPEFVIY  126 (479)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhccH-------HHHHHHHHHHHHHHHHHHhhccccccc--ccc-chhHHHHHHHH
Confidence            334444555555555543    3455321       234566666666655554432111000  000 11234456677


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      -++.|++.-...|.+..++.+..|++.|+..+|++.....+|..++..+....
T Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  179 (479)
T PRK10077        127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI  179 (479)
T ss_pred             HHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999988877665444

>TIGR00898 2A0119 cation transport protein

Probab=96.70  E-value=0.016  Score=61.74  Aligned_cols=133  Identities=10%  Similarity=0.145  Sum_probs=89.7

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++.+++..+..++..++...+-    .|.+++       +=+.++.++.+++.+..++.               -+.+++
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~----Dr~Grr-------~~~~~~~~~~~i~~~~~~~~---------------~~~~~~  183 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLS----DRFGRK-------KVLLLSTLVTAVSGVLTAFS---------------PNYTVF  183 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhh----hhccch-------HHHHHHHHHHHHHHHHHHHc---------------ccHHHH
Confidence            3455666666666666665543    454321       12445555555554443322               356677


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY  432 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  432 (478)
                      +...++.|++.-...+....++.+..|++.|+..++++....++|..+++.+..++.         +|          .+
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w----------r~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW----------RW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH----------HH
Confidence            788899999999999999999999999999999999999999999888887765443         13          23


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011747          433 FYFLIAGLGGLNIVYFLY  450 (478)
Q Consensus       433 ~f~~la~l~~v~~vif~~  450 (478)
                      .|+..++.+++..+.++.
T Consensus       245 ~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            555666666555554433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.69  E-value=0.086  Score=54.28  Aligned_cols=86  Identities=14%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDA  427 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  427 (478)
                      +.++++..-++.|++|-. .+.....+.+..|++.|+..+|++.....+|..++..++..+.+.      .+|       
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW-------  143 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL-------  143 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence            677888889999999986 456666778899999999999999999999999998888766532      135       


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHH
Q 011747          428 GRLDYFYFLIAGLGGLNIVYFLY  450 (478)
Q Consensus       428 ~~~~~~f~~la~l~~v~~vif~~  450 (478)
                         ...|...++++++..++.+.
T Consensus       144 ---r~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       144 ---QLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH
Confidence               23556666766665554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.68  E-value=0.069  Score=55.45  Aligned_cols=116  Identities=11%  Similarity=-0.000  Sum_probs=79.3

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++..+...+..++..|+..++.    .|++++       +-+.++.++.+++++..++....          ...+.+++
T Consensus        55 g~~~~~~~l~~~~~~~~~G~l~----dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l  113 (417)
T PRK10489         55 GLSVTLTGGAMFIGLMVGGVLA----DRYDRK-------KLILLARGTCGLGFIGLALNAFL----------PEPSLLAI  113 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHh----hhcCCc-------eEEEehHHHHHHHHHHHHHHHHc----------CCCcHHHH
Confidence            4455566666666666655543    444321       22445666666666554432210          01345666


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ....++.+++..+..+.....+.+..|++.++..+|++....++|..+|+.+++.+.
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            677788899998888989999999999999999999999888999988888876554

>PRK12382 putative transporter; Provisional

Probab=96.64  E-value=0.078  Score=54.44  Aligned_cols=118  Identities=13%  Similarity=-0.024  Sum_probs=78.7

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      +..+...+...+..|+..++.    .|+++       -+-+.+|.+..+++.+........      .. ....+.++++
T Consensus        55 ~~~s~~~~~~~i~~~~~G~l~----Dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~l~  116 (392)
T PRK12382         55 IAVGIQFLATVLTRGYAGRLA----DQYGA-------KRSALQGMLACGLAGLAYLLAAIL------PV-SAPFKFALLV  116 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHH----Hhhcc-------hHHHHHHHHHHHHHHHHHHhhhcc------cc-chhHHHHHHH
Confidence            344555566666777766654    45432       123455655555544322211110      00 0023567777


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ..-+++|+++....+...+.+.+..|++.|+..+|.+......|..+++.++....
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999998888888888888876554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.62  E-value=0.13  Score=55.13  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.+++++.+++.+..+....         .....+.++++...++.|+++-...+....+....+|++.|+..++++...
T Consensus        89 ~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~  159 (502)
T TIGR00887        89 YGMELIIMIIATVASGLSPG---------SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAM  159 (502)
T ss_pred             HHHHHHHHHHHHHHHHHccC---------cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence            45566666665554443221         001134567888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHh
Q 011747          394 FGFASYLSSLLITIV  408 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~  408 (478)
                      ..+|..+++.+...+
T Consensus       160 ~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       160 QGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888777544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10133 L-fucose transporter; Provisional

Probab=96.62  E-value=0.26  Score=51.88  Aligned_cols=111  Identities=8%  Similarity=-0.018  Sum_probs=77.3

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP  354 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~  354 (478)
                      +.+...+...+.+|+...+    .+|++.       -+-+.+|+++.+++.+.......            .-+.++++.
T Consensus        66 ~~~~~~~g~~i~~~~~g~l----~dr~G~-------r~~l~~g~~~~~~~~~l~~~~~~------------a~~~~~ll~  122 (438)
T PRK10133         66 IQSAFYFGYFIIPIPAGIL----MKKLSY-------KAGIITGLFLYALGAALFWPAAE------------IMNYTLFLV  122 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHHHh------------cCCHHHHHH
Confidence            3344455566666655543    355532       23456777777777654321111            135667778


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ..+++|+|.-...+....++.+.+|++.+...++++...+++|..++..++...
T Consensus       123 ~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999988888887788888888888888888777543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=1.2  Score=47.08  Aligned_cols=173  Identities=17%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh--hccC-C-CCcchH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS--AHLH-P-MSQVSV  349 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~--~~~~-g-~~~~s~  349 (478)
                      -+..++.+.+-+..-+....+.++.||.++    +..-.-+.+|.++..++++..-+.-- ....  .+++ + .-.-+.
T Consensus       279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p-~dap~~~t~~~~~~~~~~~  353 (461)
T KOG3098|consen  279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFP-NDAPLRPTDSPPLLFTPSY  353 (461)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhcccc-ccCCCCCCcccccccccch
Confidence            355666666666655544444444444322    22333456666666555543322110 0000  0000 0 111223


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcc
Q 011747          350 FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR  429 (478)
Q Consensus       350 ~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~  429 (478)
                      .--...++++|+++.+....-+.......|+ -+..+-+++-+..++++.++.+.....                    .
T Consensus       354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~-~~~~~fsi~kfyq~~~s~v~~f~~~~~--------------------~  412 (461)
T KOG3098|consen  354 YLALIIGFLLGFGDACFNTQRYVIIALLYPD-DRAQAFSLFKFYQSVASCVAFFFSPYL--------------------L  412 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhhhhhhh--------------------H
Confidence            3344567999999999999999999999944 456777777788888887655443211                    1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccccCcccc
Q 011747          430 LDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL  472 (478)
Q Consensus       430 ~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~~~~  472 (478)
                      +..+...+.++.....++++.++++++..+++...+++++.+.
T Consensus       413 l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  455 (461)
T KOG3098|consen  413 LYIYTLGLPIFCVIATTIFFIVAERTQAMEKKLTEEKESKEKR  455 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            3446667888899999999999999987777655555554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.58  E-value=0.051  Score=57.99  Aligned_cols=113  Identities=13%  Similarity=0.131  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh---hHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH---MKSIANSL  389 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~---~ks~~~gl  389 (478)
                      -+.+|+++.+++++..++.               .+.++++...++.++|+-+..|....++.++.|++   .|+...++
T Consensus        81 ~l~~~~~~~~~g~~~~~~~---------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~  145 (475)
T TIGR00924        81 TMVLGGIVLMLGHFMLAMS---------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTL  145 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhc---------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehh
Confidence            4677777777777655432               12344556677899999999999999999988865   37889999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011747          390 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR  456 (478)
Q Consensus       390 ~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~  456 (478)
                      ++....+|..+|+.+++.+.+..      +|          ..-|...++.++++.++++...+.++
T Consensus       146 ~~~~~niG~~ig~~l~g~l~~~~------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       146 FYMSINIGSFISPLLAGVIAENY------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence            99999999999998887665311      12          34455556666666666666665554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.55  E-value=0.0015  Score=67.44  Aligned_cols=91  Identities=11%  Similarity=0.034  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT  115 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~  115 (478)
                      ...+.++..+.++|.|..-|.......|.++++      ++.+++++++...++|..+++.+.+++.+..||+..|.+.+
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            344556667788888877777777676655432      58899999999999999888888888888889999999988


Q ss_pred             HHHHHHHHHHHhcccce
Q 011747          116 VLMIGAIILFLVGKKLY  132 (478)
Q Consensus       116 v~m~~~liifl~g~~~~  132 (478)
                      +..+++++..+..+++.
T Consensus       376 ~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        376 LAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            88888777665544433

>TIGR00901 2A0125 AmpG-related permease

Probab=96.55  E-value=0.099  Score=52.84  Aligned_cols=83  Identities=12%  Similarity=0.150  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHh
Q 011747          315 GIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSF  394 (478)
Q Consensus       315 ~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~  394 (478)
                      .++.++.+++++..++...            ..+.+++...+++.+++-.+..+...+++.+..|++.|+...|+.....
T Consensus        61 ~~~~~~~~~~~~~l~~~~~------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~  128 (356)
T TIGR00901        61 VLTQVLLLSLLLILSFLVP------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGY  128 (356)
T ss_pred             HHHHHHHHHHHHHHHcCCc------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHH
Confidence            4566666666554443321            2456667777788888888889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhh
Q 011747          395 GFASYLSSLLITIVH  409 (478)
Q Consensus       395 a~g~~l~~~l~~~~~  409 (478)
                      .+|..+++.++....
T Consensus       129 ~~G~~~~~~l~~~l~  143 (356)
T TIGR00901       129 RAGMLLSGSLALVLA  143 (356)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999988876554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.55  E-value=0.0023  Score=54.41  Aligned_cols=86  Identities=14%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.+.+...+.+++.|..-+...+...|.++++      +|.+..++.+...++|..+++.+.+++.+..||+..|.+.
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL  123 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence            3455666778888888888888889999988765      4788899999999999999999999888888999999988


Q ss_pred             HHHHHHHHHHHH
Q 011747          115 TVLMIGAIILFL  126 (478)
Q Consensus       115 ~v~m~~~liifl  126 (478)
                      ++..+++.+...
T Consensus       124 ~~~~~~~~~~~~  135 (141)
T TIGR00880       124 AILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHHh
Confidence            777766665544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.48  E-value=0.12  Score=55.77  Aligned_cols=112  Identities=17%  Similarity=0.129  Sum_probs=74.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH
Q 011747          311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL  390 (478)
Q Consensus       311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~  390 (478)
                      ..-+.++++..+++.++..+..               +.+-++..-++.|+..-...........+..+...-+-..|+-
T Consensus       365 ~~~~~~~ll~~gl~~~~~p~~~---------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~  429 (509)
T KOG2504|consen  365 LVLFLLTLLIAGLARLFLPFAT---------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLL  429 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHH
Confidence            3445666666666664443321               2233444556677777666666666777777777778899999


Q ss_pred             HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 011747          391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA  452 (478)
Q Consensus       391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~  452 (478)
                      .+..+++..+|+.+.+.+.+.+               +.++..|...++..+++++.+++..
T Consensus       430 l~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  430 LLFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHhHHHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999998887655433               1134556677777777777777666

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.47  E-value=0.24  Score=50.87  Aligned_cols=108  Identities=20%  Similarity=0.199  Sum_probs=72.0

Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747          276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ  355 (478)
Q Consensus       276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~  355 (478)
                      .+...+..++..|+...+    ..|.++       -+-+.+|+++.+++.+.....               -+.++++..
T Consensus        49 ~~~~~~~~~~~~~~~G~l----~Dr~gr-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~  102 (394)
T PRK11652         49 MAAYLLTYGLSQLFYGPL----SDRVGR-------RPVILVGMSIFILGTLVALFA---------------HSLTVLIAA  102 (394)
T ss_pred             HHHHHHHHHHHHHhhhhH----HHhcCC-------hHHHHHHHHHHHHHHHHHHHH---------------ccHHHHHHH
Confidence            344444455555555443    345432       122455666666655443321               235566677


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .++.+++.....+...++..+..|++.++..++.+.....++..+++.+.+...
T Consensus       103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652        103 SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899888888888888888889889999999998888888888887776554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.38  E-value=0.46  Score=52.04  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+...+..|.++.++|.|... .....++|..+.+      .|..++.+..+..=+...+++.+...+..+.+||+.|.+
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~  201 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYI  201 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHH
Confidence            345568889999999988865 4455678877532      233333333322222222233333233345699999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011747          114 PTVLMIGAIILFLV  127 (478)
Q Consensus       114 ~~v~m~~~liifl~  127 (478)
                      .++...++++...+
T Consensus       202 ~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  202 FIIWSGIALVLIFF  215 (599)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98888887766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.37  E-value=0.21  Score=51.61  Aligned_cols=84  Identities=12%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS  393 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~  393 (478)
                      +.++.++.+++++..++...            ..+.|++...+++.++......|..-+++.+..|++.|+.+.++....
T Consensus        71 l~~~~~~~~l~~~~l~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g  138 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCPP------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLG  138 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCc------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHH
Confidence            56666777666665544321            135666777778888899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhh
Q 011747          394 FGFASYLSSLLITIVH  409 (478)
Q Consensus       394 ~a~g~~l~~~l~~~~~  409 (478)
                      .++|..+++.+...+.
T Consensus       139 ~~~g~i~g~~l~~~l~  154 (402)
T PRK11902        139 YRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHhHHHHHHH
Confidence            9999999888776553

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.29  E-value=0.15  Score=51.60  Aligned_cols=90  Identities=10%  Similarity=-0.040  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHH--HHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCC
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA--NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDI  425 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~--~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~l  425 (478)
                      +.++++..-++++.++....|...+...+..|++.|+..  .+......++|..+++.+++...+.      -+|     
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------~~~-----  154 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------FGF-----  154 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------ccc-----
Confidence            344455555677777777788888888888887766643  5666666778888887777655321      022     


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 011747          426 DAGRLDYFYFLIAGLGGLNIVYFLYCAR  453 (478)
Q Consensus       426 n~~~~~~~f~~la~l~~v~~vif~~~~~  453 (478)
                           ...|+..+++.++..++.+...+
T Consensus       155 -----~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       155 -----TVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence                 23455666665555554444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.29  E-value=0.66  Score=47.37  Aligned_cols=85  Identities=18%  Similarity=0.250  Sum_probs=67.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-cchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-g~~~~F~i  113 (478)
                      +...++.|..++++|.+....-+.+++-+-|++       +....-..|-.+.++|+.+++.+++.+.++. ||+.+.+.
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            567788888888888888777777877776664       3566778889999999999998888888776 79999888


Q ss_pred             HHHHHHHHHHHHH
Q 011747          114 PTVLMIGAIILFL  126 (478)
Q Consensus       114 ~~v~m~~~liifl  126 (478)
                      =++--++++++.+
T Consensus       171 WAl~allAl~~Wl  183 (395)
T COG2807         171 WALLALLALLIWL  183 (395)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777776654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.29  E-value=0.13  Score=60.74  Aligned_cols=62  Identities=16%  Similarity=0.047  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.++++...+++|++..+..|+..+++.+..|++.|+.++|+.....++|..+|+.+++++.
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46677788899999999999999999999999999999999999999999999988887654

>TIGR00897 2A0118 polyol permease family

Probab=96.22  E-value=0.31  Score=50.44  Aligned_cols=112  Identities=9%  Similarity=0.008  Sum_probs=72.1

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      +..+...+...+..|+...+.    .|.++       -+-+.+|.++.+++.+.......           ...+.+.++
T Consensus        52 ~~~~~~~~~~~i~~~~~g~l~----dr~g~-------k~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~  109 (402)
T TIGR00897        52 SAFTLYGIAAAISAWISGVVA----EIIGP-------LKTMMIGLLLWCVGHAAFIVFGL-----------GHANYPLIL  109 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHcCc-------HHHHHHHHHHHHHHHHHHHHHhc-----------cCccHHHHH
Confidence            344455555566666665543    44421       22345677766666543322111           012445556


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHH-HHHHHHHHH
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFAS-YLSSLLITI  407 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~-~l~~~l~~~  407 (478)
                      ..+++.|++.....+.....+.+..|++.|+..+|++....++|. .+++.+.+.
T Consensus       110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678888999887778778888889999999999999999988886 466666543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11043 putative transporter; Provisional

Probab=96.19  E-value=0.46  Score=48.90  Aligned_cols=108  Identities=9%  Similarity=-0.005  Sum_probs=70.3

Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747          276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ  355 (478)
Q Consensus       276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~  355 (478)
                      .++..+...+..++...    +..|.++       -+-+.+|.++.+++.+..+..               .+.++++..
T Consensus        47 ~s~~~~~~~~~~~~~g~----l~dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~  100 (401)
T PRK11043         47 LSLFLAGFALGQLLWGP----LSDRYGR-------KPVLLAGLSLFALGSLGMLWV---------------ESAAQLLVL  100 (401)
T ss_pred             HHHHHHHHHHHHHhhhh----HHhhcCC-------cHHHHHHHHHHHHHHHHHHHh---------------cCHHHHHHH
Confidence            33444444445554444    3355432       123555666666555443322               245666677


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .++.|++.....+...+.+.+..|++.++...+......++|..+++.+++...
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899888888888888899999998888888887777788888777776554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.18  E-value=0.21  Score=51.64  Aligned_cols=108  Identities=14%  Similarity=0.052  Sum_probs=76.9

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      +++.+...+...++.|+...+.    .|+++|       +-+.++.++.+++.+..+...               +.   
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~la----Dr~grr-------~vl~~~~~~~~~~~~~~~~~~---------------~~---   91 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFA----DSFPKG-------RVMFIANGIKLLGCLLMLFGI---------------HP---   91 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhh----hccCCc-------hhhHHHHHHHHHHHHHHHHHH---------------HH---
Confidence            4555666667777778777543    555432       224555555555443322211               11   


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +...+++|+++.+..|+..+.+.+..|++.++..+|++.....+|..+|+.+++...
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999999999999988887664

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.16  E-value=0.14  Score=54.58  Aligned_cols=129  Identities=9%  Similarity=0.050  Sum_probs=72.8

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhh-c-cCCCCcchHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASA-H-LHPMSQVSVFW  351 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~-~-~~g~~~~s~~w  351 (478)
                      ......++.-++.+|+...+--..-.|.+++    ++.  +..|.+...++++..+.......... . +++......++
T Consensus        43 ~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~  116 (477)
T TIGR01301        43 IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIV  116 (477)
T ss_pred             HHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHH
Confidence            3455666677777777666543211133321    111  34456666666666554332100000 0 00111122234


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhH--HHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK--SIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~k--s~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      .+..+.++.++--...+..-+++.+..|++.|  +...+......++|+.++..+++..
T Consensus       117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555666678999999999876  5788888888899999998888653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.06  E-value=1.4  Score=47.13  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             HhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHH
Q 011747          366 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNI  445 (478)
Q Consensus       366 ~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~  445 (478)
                      ..|+..=+...+.|++.|+.+++.-.+..-..+++-+.....+++.-                 -.++|...++.+++.+
T Consensus       385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-----------------g~~~filF~i~~~~~~  447 (485)
T KOG0569|consen  385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-----------------GPYVFILFVIPLAIFL  447 (485)
T ss_pred             CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cchhhHHHHHHHHHHH
Confidence            46777777899999999999999988888888887776665554321                 1367888888888888


Q ss_pred             HHHHHhhhccccccCCCcccc
Q 011747          446 VYFLYCARRYRYKSGIQSLED  466 (478)
Q Consensus       446 vif~~~~~~~~~~~~~~~~~~  466 (478)
                      +..+...+--|.|+.++..++
T Consensus       448 i~~~~~lPETkgr~~~eI~~~  468 (485)
T KOG0569|consen  448 IYLYRYLPETKGRTPYEIIEE  468 (485)
T ss_pred             HHHHHhCcccCCCCHHHHHHH
Confidence            888777777777776655444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.02  E-value=0.51  Score=48.88  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH---HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW---LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL  389 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w---lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl  389 (478)
                      =|-.|+++.+.+...+...-....... ++. ..-+..|   ....|++.|+|=-.....++++..+.+|++-|+...++
T Consensus        52 yI~~G~~~~~~g~~~ap~a~~~l~~~~-~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~i  129 (403)
T PF03209_consen   52 YIWGGTLLQAGGLAIAPFALLLLAESG-QQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAI  129 (403)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccc-ccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHH
Confidence            366777777777665554432111000 011 1122333   44688999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHH
Q 011747          390 LFCSFGFASYLSSLLIT  406 (478)
Q Consensus       390 ~~l~~a~g~~l~~~l~~  406 (478)
                      -+.+.=+|-.++..+.+
T Consensus       130 vw~Mli~G~iv~ai~~g  146 (403)
T PF03209_consen  130 VWVMLIVGIIVSAIVFG  146 (403)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998888888877765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.01  E-value=0.49  Score=49.04  Aligned_cols=85  Identities=16%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc---chhHhHHH
Q 011747           38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIP  114 (478)
Q Consensus        38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g---~~~~F~i~  114 (478)
                      -+.+.=.++++|.|-| +.--+....-|+++      ++-.+..++= .-|+|+.+..++.|.+....|   |+.+-.+.
T Consensus       107 ~ll~~gll~G~~GasF-av~m~~~s~~fP~~------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~  178 (417)
T COG2223         107 QLLVIGLLLGLAGASF-AVGMPNASFFFPKE------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIY  178 (417)
T ss_pred             HHHHHHHHHhccccee-hcccccccccCChh------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3333334455555544 33345666778765      3667777777 889999999999999988888   99999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 011747          115 TVLMIGAIILFLVGKK  130 (478)
Q Consensus       115 ~v~m~~~liifl~g~~  130 (478)
                      .+.++++.+.++.+.+
T Consensus       179 ~~~l~v~~v~~~~~~~  194 (417)
T COG2223         179 VVALAIAAVLAWLGMN  194 (417)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999998888877644

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.93  E-value=1.2  Score=47.47  Aligned_cols=58  Identities=14%  Similarity=-0.007  Sum_probs=41.4

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhcee
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL   98 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~   98 (478)
                      .+...+++.-++.++| |..-+.....+.+.|+++      +|..+..++...-|+|..++..+.
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHH
Confidence            3566777777788888 445577778888888754      478888888777778876555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=95.85  E-value=0.25  Score=53.01  Aligned_cols=86  Identities=15%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh--hHHHHHH
Q 011747          311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH--MKSIANS  388 (478)
Q Consensus       311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~--~ks~~~g  388 (478)
                      -+-+.+|.++.+++.+..++...            ...  -++...+++++|+-+..|....++.++-|++  .|+...+
T Consensus        81 r~~~~~g~~~~~~g~~~~~~~~~------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~  146 (489)
T PRK10207         81 KRTIVLGAIVLAIGYFMTGMSLL------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFT  146 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchh
Confidence            34567888888887766654321            011  1335678889999999999999999999876  4577899


Q ss_pred             HHHHHhhHHHHHHHHHHHHhhc
Q 011747          389 LLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       389 l~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      ++++...+|..+++.+++.+.+
T Consensus       147 ~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        147 LFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877653

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.84  E-value=0.16  Score=52.69  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHH
Q 011747          308 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN  387 (478)
Q Consensus       308 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~  387 (478)
                      .+|-+=|++|++++++.++..++.               .|.+.++..+++.|.-+-...|.....++.--|++.||...
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs---------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~  155 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS---------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWW  155 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceE
Confidence            355666899999999999887754               25666778889999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHH
Q 011747          388 SLLFCSFGFASYLSSLLIT  406 (478)
Q Consensus       388 gl~~l~~a~g~~l~~~l~~  406 (478)
                      |+|..+..+|..+.+.+..
T Consensus       156 siWn~shNiGGal~~~~~~  174 (448)
T COG2271         156 SIWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             EEehhhhhcccchHHHHHH
Confidence            9999999999999888873

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=95.83  E-value=0.42  Score=56.56  Aligned_cols=64  Identities=20%  Similarity=0.078  Sum_probs=58.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      .|.++++..-+++|+++.+..|+..+.+.+..|++.++..+|+.....++|..+|+.+++++..
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3677888899999999999999999999999999999999999999999999999999887653

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.76  E-value=0.46  Score=51.07  Aligned_cols=116  Identities=12%  Similarity=0.143  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhh--HHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHM--KSIANSLL  390 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~--ks~~~gl~  390 (478)
                      -+.+|.++.+++.+..++..              .+.+++....++.+++.-+..|....++.++.|++.  ++..++++
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~--------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~  155 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSG--------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMY  155 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHH
Confidence            46677777777765544321              122334456788899999888988899999887543  34578888


Q ss_pred             HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747          391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK  458 (478)
Q Consensus       391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~  458 (478)
                      +....+|..+++.+.+.+.+..      +|          .+-|+..++.+++..+.++...++++.+
T Consensus       156 ~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~  207 (500)
T PRK09584        156 YMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY  207 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence            9999999999988887664310      12          3445556666666666666666555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.76  E-value=0.52  Score=49.27  Aligned_cols=107  Identities=9%  Similarity=0.052  Sum_probs=74.2

Q ss_pred             HHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 011747          288 PFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI  367 (478)
Q Consensus       288 Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~  367 (478)
                      |+-..++-++..|+++       -+-+.+++++.+++.+..++......     -+  ..++.+++..-+++|++|-...
T Consensus        77 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~l~~~R~l~G~g~g~~~  142 (432)
T PRK10406         77 PIGGWLFGRIADKHGR-------KKSMLISVCMMCFGSLVIACLPGYET-----IG--TWAPALLLLARLFQGLSVGGEY  142 (432)
T ss_pred             HHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHhhcCCchh-----HH--HHHHHHHHHHHHHHHhhhhhhH
Confidence            4444444445566643       23456777777777666554431100     00  1245567778899999999999


Q ss_pred             hhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          368 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       368 ~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      |.+..++.+.+|++.|+..++++......|..++..+...+
T Consensus       143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  183 (432)
T PRK10406        143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL  183 (432)
T ss_pred             hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888888777665444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.62  E-value=0.22  Score=50.31  Aligned_cols=90  Identities=12%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC  392 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l  392 (478)
                      -+.+|.++.+++.+..+......       .......++++...+++|++.-...+....++.+..|++.|+..++.+..
T Consensus        67 ~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  139 (394)
T TIGR00883        67 TLVITLLMMGIGTLLIGLLPSYA-------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQV  139 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhCCChh-------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHH
Confidence            35567777777766555443210       00011233466777899999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhh
Q 011747          393 SFGFASYLSSLLITIVH  409 (478)
Q Consensus       393 ~~a~g~~l~~~l~~~~~  409 (478)
                      ...+|..+++.+.....
T Consensus       140 ~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       140 GAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988776544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=95.58  E-value=0.23  Score=53.07  Aligned_cols=107  Identities=15%  Similarity=0.111  Sum_probs=74.5

Q ss_pred             HHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 011747          288 PFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI  367 (478)
Q Consensus       288 Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~  367 (478)
                      |+-..+.-++..|+++       -+-+.+++++.+++.+..++......-     |  ...+++++..-+++|+++-...
T Consensus        71 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~l~~i~~~~~a~~~~~~~~-----g--~~a~~~l~~~R~l~G~g~g~~~  136 (490)
T PRK10642         71 PLGGLFFGMLGDKYGR-------QKILAITIVIMSISTFCIGLIPSYATI-----G--IWAPILLLLCKMAQGFSVGGEY  136 (490)
T ss_pred             HHHHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHhcccHHHH-----H--HHHHHHHHHHHHHHHhHhHhhH
Confidence            3333333344556543       235677888888887776665421000     0  0122346778899999999999


Q ss_pred             hhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          368 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       368 ~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      +.+..++.+..|++.||.+++++.....+|..+++.+..++
T Consensus       137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888888887666443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=95.54  E-value=1.7  Score=46.14  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHh-------hcChhhHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNK-------QFPDHMKSI  385 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~-------~aP~~~ks~  385 (478)
                      -+.+|.++..++.+...+...             -+.++.+...++.++|--...+.--+.+.+       ..-++..|.
T Consensus       304 ~~~~~~~~~~i~~~~~~f~~~-------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi  370 (467)
T COG2211         304 LFLIGLLLLAVGYLLLYFTPA-------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI  370 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC-------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence            456667777776665555431             234444455566666665555554444443       345667788


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHH
Q 011747          386 ANSLLFCSFGFASYLSSLLITI  407 (478)
Q Consensus       386 ~~gl~~l~~a~g~~l~~~l~~~  407 (478)
                      .-|...+..=+|..+++.+.++
T Consensus       371 ~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         371 VYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777776666666655543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.47  E-value=2  Score=44.48  Aligned_cols=67  Identities=12%  Similarity=0.089  Sum_probs=49.7

Q ss_pred             CCCchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE
Q 011747           30 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ  102 (478)
Q Consensus        30 ~~~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~  102 (478)
                      .+.......|..++.+++.|.|..+...++++++.-+++..   .+|-..-.-|   .-+|+.++|.+.+++-
T Consensus        98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a---~~rlnl~q~f---n~lGa~~gp~~g~~li  164 (422)
T COG0738          98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA---AFRLNLAQAF---NGLGAILGPLLGSSLI  164 (422)
T ss_pred             hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH---HHHHHHHHHh---hhhHHHHHHHHHHHHH
Confidence            45567788899999999999999999999999999987532   1232233333   3588888887766543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.45  E-value=1.4  Score=46.94  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC  392 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l  392 (478)
                      -+.+|+++.+++.+..+..               .+.+.++...+++|+++.... .....+.+..|++.|+..+|++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~---------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~  166 (476)
T PLN00028        103 GSAFLLMLTAPAVFCMSLV---------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAG  166 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHH
Confidence            3455666666665544332               133445566788999987644 355677888999999999999987


Q ss_pred             HhhHHHHHHHHHHHH
Q 011747          393 SFGFASYLSSLLITI  407 (478)
Q Consensus       393 ~~a~g~~l~~~l~~~  407 (478)
                      ...+|..+++.+...
T Consensus       167 ~~~~g~~~~~~~~~~  181 (476)
T PLN00028        167 WGNLGGGVTQLLMPL  181 (476)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666555443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.23  E-value=5.3  Score=42.79  Aligned_cols=82  Identities=13%  Similarity=0.001  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      .+.+.+.+.-.+.+++.++.-.+....++|.+.++      +|..+-++ +.....|+.+++...+|+-+  +|++.+.+
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~  239 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI  239 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence            35666666677778888888899999999999865      36666666 77777888888888888776  89999998


Q ss_pred             HHHHHHHHHHH
Q 011747          114 PTVLMIGAIIL  124 (478)
Q Consensus       114 ~~v~m~~~lii  124 (478)
                      .++..++.++.
T Consensus       240 ~~~~~~~~~~~  250 (521)
T KOG0255|consen  240 ISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHH
Confidence            77766666555

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.75  E-value=0.29  Score=50.89  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-ChhhHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF-PDHMKSIANSLLFC  392 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a-P~~~ks~~~gl~~l  392 (478)
                      +.+|.++.+++++.......         .......+|.+..+++.+++.-+..+.-.+.....+ |++.|+...+....
T Consensus        73 i~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~  143 (437)
T TIGR00792        73 LLIGAIPFSIVLVLLFTTPD---------FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRF  143 (437)
T ss_pred             HHHhHHHHHHHHHHHHhCCC---------CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHH
Confidence            56677777776665543321         001234678888889999988888877777777776 56889999998888


Q ss_pred             HhhHHHHHHHHHHH
Q 011747          393 SFGFASYLSSLLIT  406 (478)
Q Consensus       393 ~~a~g~~l~~~l~~  406 (478)
                      ...+|..+++.+..
T Consensus       144 ~~~~g~~l~~~~~~  157 (437)
T TIGR00792       144 GATLGGLLVAVIVL  157 (437)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888877766543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.63  E-value=0.65  Score=49.49  Aligned_cols=114  Identities=11%  Similarity=0.173  Sum_probs=85.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747          312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF  391 (478)
Q Consensus       312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~  391 (478)
                      +-+.++.++.+++-+.......             .+.+.++..=+++|++|-...|.--....+-+|+..|++..++.+
T Consensus       104 ~v~~~~~~~sa~~t~l~P~aa~-------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~  170 (466)
T KOG2532|consen  104 RVFFISGLISALLTLLTPLAAS-------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILT  170 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHH
Confidence            4567788887777666554432             444566788899999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 011747          392 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR  453 (478)
Q Consensus       392 l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~  453 (478)
                      ...-+|+.++..+++..-+.     +-+|-          .-|.+.|+++++-.++++.+.+
T Consensus       171 ~g~q~g~v~~mp~sg~lc~s-----~~GW~----------sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  171 AGSQLGTIITMPVSGLLCES-----SLGWP----------SIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHhHHHHhcc-----CCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence            99989999887777655432     13572          3345677777766666665544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=94.61  E-value=5.4  Score=42.47  Aligned_cols=114  Identities=8%  Similarity=0.007  Sum_probs=70.8

Q ss_pred             cCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchH
Q 011747          270 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSV  349 (478)
Q Consensus       270 ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~  349 (478)
                      +.++++..+..+..+... +.....-++..|++.       -+-+.+++++.++..+..++.-.        +  ...|.
T Consensus        67 ls~~q~g~l~ai~~l~~a-l~rip~G~l~Dr~G~-------R~v~~~~~ll~~i~~~~~~~a~~--------~--~~~s~  128 (462)
T PRK15034         67 FTTDQLFLLTALPSVSGA-LLRVPYSFMVPIFGG-------RRWTVFSTAILIIPCVWLGIAVQ--------N--PNTPF  128 (462)
T ss_pred             CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-------hHHHHHHHHHHHHHHHHHHHHHc--------c--cCCCH
Confidence            455555544444443333 233333445566642       23456666666666665554311        0  01466


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHH
Q 011747          350 FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSS  402 (478)
Q Consensus       350 ~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~  402 (478)
                      +.++...++.|++ -...+.++..+.+..|++.||+.+|++.-...+|..++.
T Consensus       129 ~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        129 GIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            7788889999998 557888999999999999999999999533344444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.61  E-value=0.0071  Score=65.52  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=3.0

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHhhh----hhh--------------hh--------ccC--------C-CCcchHHHHH
Q 011747          309 TLLQRIGIGMIFSILSMIVAGLVERG----RRA--------------SA--------HLH--------P-MSQVSVFWLA  353 (478)
Q Consensus       309 s~l~ki~iG~~l~~ls~~~~~~~~~~----~~~--------------~~--------~~~--------g-~~~~s~~wlv  353 (478)
                      ..++-+++|.++.+++.++.++.+..    +..              .+        .+.        . ....-.++++
T Consensus        66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  145 (539)
T PF03137_consen   66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI  145 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence            34678999999999999887765321    100              11        000        0 1112245566


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHH----Hhhcccc--------cCCCCccc
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLIT----IVHGVTA--------RHGHPDWL  421 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~----~~~~~~~--------~~~~~~w~  421 (478)
                      ..-++.|+|..-+++.|.+|+=+.++++..++++|+.+....+|-.+|-.+++    ++-+...        ..+++.|+
T Consensus       146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv  225 (539)
T PF03137_consen  146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV  225 (539)
T ss_dssp             ------SSS-----------------------------------------------------------------------
T ss_pred             HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence            77799999999999999999999999999999999999998887776655554    3323211        11223343


Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747          422 TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK  458 (478)
Q Consensus       422 ~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~  458 (478)
                      ...      .-=|...|.+.++..+.++..-|++...
T Consensus       226 GAW------WLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  226 GAW------WLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             -------------------------------------
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            210      0023346667777777777666666555

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00896 CynX cyanate transporter

Probab=94.60  E-value=1.6  Score=44.01  Aligned_cols=109  Identities=11%  Similarity=0.182  Sum_probs=72.6

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++..+++.+...+..|+..++.    +|+++       -+-+.+|+++.+++.+.. ..               -+.+++
T Consensus        38 g~~~s~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~-~~---------------~~~~~l   90 (355)
T TIGR00896        38 GLLTALPVLCFAVLAPLAPWLA----RRFGE-------ERSVAAGLLLIAAGILIR-SA---------------PGTALL   90 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHH-Hh---------------ccHHHH
Confidence            3455666667777777666543    45432       123566666655554432 11               234455


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +..-++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+.....
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888999988887777777777774 7899999999988899888887765443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.49  E-value=0.87  Score=48.48  Aligned_cols=82  Identities=10%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC  392 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l  392 (478)
                      -+.+|++.-.+++++.++.+.                -|++-...+....-....|+..+++.+++.++-+|..+++...
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~----------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~  373 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE----------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISG  373 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc----------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHH
Confidence            467888888888888777653                1455555666666677899999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhhc
Q 011747          393 SFGFASYLSSLLITIVHG  410 (478)
Q Consensus       393 ~~a~g~~l~~~l~~~~~~  410 (478)
                      ..++.+.+++.+.+.+..
T Consensus       374 i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  374 IEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHHHhhhhhHHHHHHHHH
Confidence            999999999888765543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=94.48  E-value=7.3  Score=40.71  Aligned_cols=86  Identities=16%  Similarity=0.290  Sum_probs=63.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747          312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF  391 (478)
Q Consensus       312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~  391 (478)
                      +-+-+|+++..+..+.....+.            +.. +|.  .=++.+.+.-=+....=++..+.+|++..+...|+|.
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~~------------~~~-f~i--~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglya  383 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLEG------------ELD-FWI--LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYA  383 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHccc------------cHH-HHH--HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhh
Confidence            4566777777776665554442            122 232  2255666666667778889999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhhccc
Q 011747          392 CSFGFASYLSSLLITIVHGVT  412 (478)
Q Consensus       392 l~~a~g~~l~~~l~~~~~~~~  412 (478)
                      ++.=.++.+|+.+.+++.+.+
T Consensus       384 ltgra~S~~gp~lv~v~t~iT  404 (438)
T COG2270         384 LTGRAASFLGPFLVAVITQIT  404 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHh
Confidence            999999999999999887654

>TIGR00889 2A0110 nucleoside transporter

Probab=94.16  E-value=0.026  Score=59.13  Aligned_cols=86  Identities=8%  Similarity=0.019  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHH-HHhhHHHHHhhceeeeEEee------ccch
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDS------VSWV  108 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY-~~iNiGa~~~~~~~~~i~~~------~g~~  108 (478)
                      ...+++...+.+++.|..-+....++.|.++++      +|.+++++++ ...++|+.+++.+.+++.++      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            455666777888888888888888899988754      4888999997 56789999999999988776      4699


Q ss_pred             hHhHHHHHHHHHHHHHHHh
Q 011747          109 IGFGIPTVLMIGAIILFLV  127 (478)
Q Consensus       109 ~~F~i~~v~m~~~liifl~  127 (478)
                      .+|.++++..+++.++++.
T Consensus       382 ~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887776666665543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=94.08  E-value=6.1  Score=40.60  Aligned_cols=86  Identities=10%  Similarity=-0.039  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhH--HHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCC
Q 011747          349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK--SIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDID  426 (478)
Q Consensus       349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~k--s~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln  426 (478)
                      .+++.....+.+..+....|...+.+.+..|++-|  +.+.+......++|..+++.+++.+.+.-      +|      
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------  172 (393)
T PRK15011        105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------  172 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence            34443444555555567788888888777665433  45567888888899999988887664310      23      


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHH
Q 011747          427 AGRLDYFYFLIAGLGGLNIVYFLY  450 (478)
Q Consensus       427 ~~~~~~~f~~la~l~~v~~vif~~  450 (478)
                          ..-|+..+++.++..+..+.
T Consensus       173 ----~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        173 ----TVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHh
Confidence                23456666666655554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.03  E-value=0.49  Score=48.58  Aligned_cols=127  Identities=16%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhh---HHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHM---KSIANSL  389 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~---ks~~~gl  389 (478)
                      -+.+|.++..++.++..+...-..   .   ....+...+.....++++|.-++-|....+..+|-+++.   +...-..
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~~---~---~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~   76 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPPS---L---PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW   76 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSSS---C---------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcch---h---hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH
Confidence            356788888888877555432100   0   112445556678889999999999999999999988763   3444456


Q ss_pred             HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 011747          390 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI  461 (478)
Q Consensus       390 ~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~  461 (478)
                      |+....+|+.++..+...+++-      .+          ....|++.++.++++.++|+.-.++|+++..+
T Consensus        77 fY~~in~G~~~~~~~~~~i~~~------~~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~  132 (372)
T PF00854_consen   77 FYWGINIGSLFSPTLVPYIQQN------YG----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAPP  132 (372)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHC------S-----------HHHHHHHHHHHHHHHHHHHHCCCCTT--S---
T ss_pred             HHHHHhhhhHhhcccchhhccc------cc----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCcc
Confidence            6788899999887776655531      12          34578888888999999999988888887443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=93.95  E-value=7.7  Score=41.67  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee-ccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~-~g~~~~F~i  113 (478)
                      +...+.+|=++.++|.|+.--.+..+++|-=+++      .|...-+.+.+.+++|.+++..+....++. ++|+..+++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            6788899999999999999866666666644332      477777889999999999996444444432 589988876


Q ss_pred             HHHHHHHHHHH
Q 011747          114 PTVLMIGAIIL  124 (478)
Q Consensus       114 ~~v~m~~~lii  124 (478)
                      ..+.-++-.+.
T Consensus       215 ~~i~~~~~~~~  225 (513)
T KOG0254|consen  215 ALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHH
Confidence            55544444443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.89  E-value=1  Score=47.99  Aligned_cols=114  Identities=12%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++.....++...+..|++.+.=    +|..      +.-+=+..|.+++.++-++...++..        +  +-+.|++
T Consensus        74 G~viaa~slg~~i~~liF~~Ws----~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~--------~--~~~~y~m  133 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWS----NKTG------SVKKPLIVSFLIAIIGNLLYLALAYV--------P--NGVKYLM  133 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccc----cccC------CcccCHHHHHHHHHHHHHHHHHHHhc--------c--cchHHHH
Confidence            3455667788888888888632    2221      11223688999999998888666652        1  1278899


Q ss_pred             HHHHHHHHHH-HHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          353 APQLILMGFC-EAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       353 v~~y~l~~lg-El~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ...+++.|+| -.+..--.+.-..+-.+++.|+++..  .....+|..+|+.+...+
T Consensus       134 L~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~--~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  134 LVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAAT--SGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHh--hhHHHHHHHHhHHHHHHH
Confidence            9999999999 44444444433344455555555444  444445555555544443

>PRK09952 shikimate transporter; Provisional

Probab=93.88  E-value=1.2  Score=46.64  Aligned_cols=109  Identities=14%  Similarity=0.130  Sum_probs=73.7

Q ss_pred             HHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 011747          286 WLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAF  365 (478)
Q Consensus       286 l~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~  365 (478)
                      ..|+-..+.-++..|+++       -+-+.+++++.+++.+..++......     -+  -.+++.++..-+++|+++-.
T Consensus        76 ~~~~g~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~l~~~R~l~G~~~g~  141 (438)
T PRK09952         76 FRPLGGVVFGHFGDRLGR-------KRMLMLTVWMMGIATALIGLLPSFST-----IG--WWAPVLLVTLRAIQGFAVGG  141 (438)
T ss_pred             HHhhHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHhcCCcHHH-----HH--HHHHHHHHHHHHHHHhhhcc
Confidence            344444444445556542       23456677777776665555432100     00  01223466677899999999


Q ss_pred             HhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          366 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       366 ~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ..|....++.+..|++.|+..++......++|..++..+...+
T Consensus       142 ~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        142 EWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             cHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887666544

>PRK15075 citrate-proton symporter; Provisional

Probab=93.78  E-value=3.2  Score=43.37  Aligned_cols=86  Identities=13%  Similarity=0.115  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcch---HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVS---VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL  389 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s---~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl  389 (478)
                      -+.+|+++.+++.+..++.....          ...   ..+++..-+++|+++-...+....++.+..|++.|+..+++
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~  157 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYA----------TIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSW  157 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHH----------HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHH
Confidence            45667777776666555443110          011   12345556889999988888888999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHh
Q 011747          390 LFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       390 ~~l~~a~g~~l~~~l~~~~  408 (478)
                      +.....+|..+++.++..+
T Consensus       158 ~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        158 QSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8887777776666665543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=93.77  E-value=1.8  Score=44.54  Aligned_cols=56  Identities=9%  Similarity=-0.048  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .+...++.+++.....+..-+++.+..++  ++...|......++|..+++.++++..
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence            34556778888887888777777665543  334556555666777777777766553

>TIGR01272 gluP glucose/galactose transporter

Probab=93.69  E-value=0.79  Score=45.94  Aligned_cols=63  Identities=6%  Similarity=-0.066  Sum_probs=57.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      -|..+.+..+++++.|-.+..++...++....|++.++..+++-....++|..+++.+++.+.
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999988999999999999999999999998654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.53  E-value=0.09  Score=54.10  Aligned_cols=88  Identities=11%  Similarity=0.101  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +++.++++=.+=++|..+...+-.++.+|-|.++.     +|.+...+---++.+|.++||-..+.+-+-.|+.+-|++.
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL  232 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL  232 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence            45667777777789999999999999999999874     4888899999999999999999999998889999999998


Q ss_pred             HHHHHHHHHHHHh
Q 011747          115 TVLMIGAIILFLV  127 (478)
Q Consensus       115 ~v~m~~~liifl~  127 (478)
                      ++.+++...+-++
T Consensus       233 ~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  233 AIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHHHHh
Confidence            8887777665443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.52  E-value=0.54  Score=52.27  Aligned_cols=145  Identities=12%  Similarity=0.148  Sum_probs=93.6

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHhhh----hhhhhc-------c---------C---------C--C----CcchHHH--
Q 011747          309 TLLQRIGIGMIFSILSMIVAGLVERG----RRASAH-------L---------H---------P--M----SQVSVFW--  351 (478)
Q Consensus       309 s~l~ki~iG~~l~~ls~~~~~~~~~~----~~~~~~-------~---------~---------g--~----~~~s~~w--  351 (478)
                      ..++-|++|+++.+++.+..++.+..    +++...       .         +         .  .    ..-+..|  
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            34677999999999999888776422    111000       0         0         0  0    1122233  


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh----cc-ccc----CCCCcccc
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH----GV-TAR----HGHPDWLT  422 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~----~~-~~~----~~~~~w~~  422 (478)
                      ++..-++.|+|+--+.+.|.+++=+.+-++-.++++|+.+....+|=.+|-.++++..    +. .+.    ..++.|+.
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG  319 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG  319 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence            4456699999999999999999999999999999999999887776666665555443    33 111    22333432


Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011747          423 NDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKS  459 (478)
Q Consensus       423 ~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~  459 (478)
                      .      -.-=|++.++++++..+-++..-+.+++..
T Consensus       320 A------WWlGFLi~g~~~~~~a~p~f~fPk~lp~~~  350 (735)
T KOG3626|consen  320 A------WWLGFLICGALLLFSAVPLFFFPKELPKSQ  350 (735)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence            1      011345577888888888888777776543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=93.51  E-value=5  Score=43.12  Aligned_cols=114  Identities=14%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh--hHHHHHHHH
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH--MKSIANSLL  390 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~--~ks~~~gl~  390 (478)
                      -+.+|.++.+++.+..+..+              .+..+......+..+|--+..+...+++.++-|++  .|....+++
T Consensus        78 ~iliG~il~~lg~lll~~~~--------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~  143 (493)
T PRK15462         78 AVMLGALLMAIGHVVLGASE--------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLM  143 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHH
Confidence            35678887777765443211              11112223334455555555666677888888875  788899999


Q ss_pred             HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011747          391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR  456 (478)
Q Consensus       391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~  456 (478)
                      +....+|..+++.+.+.+.+..      +|          .+-|.+.++.+++..++++...+++.
T Consensus       144 Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        144 YAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            9999999999998887664311      22          33455556556666666655554543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=93.51  E-value=4  Score=39.72  Aligned_cols=122  Identities=15%  Similarity=0.229  Sum_probs=75.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH
Q 011747          311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL  390 (478)
Q Consensus       311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~  390 (478)
                      ..-..+|.++..+++......-..+        ....+.|.+.....+.+.|..+...+.+--..+.-|+ .||...|+-
T Consensus        66 ~~~l~iG~~~~~~GY~~~~l~~~~~--------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgil  136 (250)
T PF06813_consen   66 WVVLLIGAVLGFVGYGLLWLAVSGR--------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGIL  136 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCc--------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhh
Confidence            3345778888888776655442211        0123444444444566677777777777777788896 699999988


Q ss_pred             HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747          391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK  458 (478)
Q Consensus       391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~  458 (478)
                      --..+++..+=..+...+            +++     +.+.|..+++.+..+..++....-|...++
T Consensus       137 k~~~GLSaai~t~i~~~~------------f~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~~~  187 (250)
T PF06813_consen  137 KGFFGLSAAIFTQIYSAF------------FGD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVPPS  187 (250)
T ss_pred             hHHHHhHHHHHHHHHHHH------------cCC-----ChHHHHHHHHHHHHHHHHHHhhheeccCCc
Confidence            888888777644444322            222     134577778877776666555555555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=92.88  E-value=2.7  Score=45.51  Aligned_cols=114  Identities=20%  Similarity=0.200  Sum_probs=76.7

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhH-HHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG-IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW  351 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~-iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w  351 (478)
                      +.++....+-.+++.|+-..+.    .|+.+        +|+. .+-++.++..+..++....          +..++|.
T Consensus        48 alv~~a~~LP~~Llsl~aG~la----Dr~dr--------rrili~~~~~~~~~~~~L~~l~~~----------~~~~~~~  105 (524)
T PF05977_consen   48 ALVQAASTLPILLLSLFAGALA----DRFDR--------RRILILSQLLRALVALLLAVLAFF----------GLLSPWL  105 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hcccc--------hHHHHHHHHHHHHHHHHHHHHHHh----------CcCCHHH
Confidence            4566677777777777666543    33322        2333 3333333333333333221          2477887


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ++..-++.+++..+..|+-.+.+-+..|++.-....++......++..+|+.++++.
T Consensus       106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen  106 LLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            888889999999999999999999999998888888888877777777776666543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.98  E-value=6.9  Score=39.01  Aligned_cols=88  Identities=8%  Similarity=0.188  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHH
Q 011747          355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFY  434 (478)
Q Consensus       355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f  434 (478)
                      ...++|++--++.-.---.+....|++.-|+.-|.-.....+|-.+.+.+++++.+..     +++    .   .++.||
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~-----g~y----~---~le~ff  425 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD-----GSY----D---NLEAFF  425 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC-----Cch----h---hHHHHH
Confidence            4466777766666666667888999999998888888777888877777777665421     221    1   257788


Q ss_pred             HHHHHHHHHHHHHHHHhhhc
Q 011747          435 FLIAGLGGLNIVYFLYCARR  454 (478)
Q Consensus       435 ~~la~l~~v~~vif~~~~~~  454 (478)
                      ...+.+++.+..+.+.+-+|
T Consensus       426 l~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  426 LIIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             HHHHHHHHHHHHHHhheecc
Confidence            88888888888877776554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=91.66  E-value=5.6  Score=40.70  Aligned_cols=60  Identities=10%  Similarity=-0.107  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.|+++..+++++.+.-...|...+.+.+  +++.++...|......++|..+++.+++...
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677788888877777877666543  3567788999998888999999888776654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=91.29  E-value=7.6  Score=39.85  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=82.3

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHH
Q 011747          308 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN  387 (478)
Q Consensus       308 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~  387 (478)
                      +++.+-+..++++.+++.++       |.         -.+.+-+...-++.+.|=....+.--+++-+.-|++. +.+|
T Consensus        74 ~g~er~l~~~Llli~~G~~i-------R~---------~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mt  136 (395)
T COG2807          74 FGEERSLFLALLLIAAGILI-------RS---------LGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMT  136 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHH-------Hh---------cccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHH
Confidence            46677788888877766542       21         0244556677788899989999999999999999998 8999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011747          388 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR  456 (478)
Q Consensus       388 gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~  456 (478)
                      |+|..+.++|..++..+........     .+|-        ..  ....+.+++++.++++-...|++
T Consensus       137 glYs~sl~~~aaLaa~lavpla~~~-----~gW~--------~a--L~~WAl~allAl~~WlPq~~r~~  190 (395)
T COG2807         137 GLYSTSLGAGAALAAALAVPLAQHS-----GGWR--------GA--LGFWALLALLALLIWLPQALREQ  190 (395)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHhh-----ccHH--------HH--HHHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999887765444311     2352        12  22345666777777776654443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=91.25  E-value=1.3  Score=45.67  Aligned_cols=102  Identities=11%  Similarity=0.054  Sum_probs=72.4

Q ss_pred             HHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 011747          286 WLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAF  365 (478)
Q Consensus       286 l~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~  365 (478)
                      ++-+-...|-.+-.|+++||       -+.+|.+..+++++..+...               +...++..=++.|+..-.
T Consensus        80 lQ~~sS~~~G~~SD~yGRkp-------vll~c~~~va~s~ll~~~S~---------------~F~afv~aR~l~Gi~kgn  137 (451)
T KOG2615|consen   80 LQFISSPLWGCLSDRYGRKP-------VLLACLIGVALSYLLWALSR---------------NFAAFVLARFLGGIFKGN  137 (451)
T ss_pred             HHHHhhhhhhhhhhhhCchH-------HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhhccCc
Confidence            34344444444556665432       35667777777666554332               122355556778888877


Q ss_pred             HhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          366 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       366 ~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      +++ .-+++.+.++++.|++.|+....+.++|..+|+.+++....
T Consensus       138 l~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  138 LSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            777 68899999999999999999999999999999999987765

>TIGR00806 rfc RFC reduced folate carrier

Probab=90.88  E-value=16  Score=39.24  Aligned_cols=82  Identities=7%  Similarity=0.073  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhH--
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFG--  112 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~--  112 (478)
                      +...+.+.-++.++|.|..- .....+..-++++      +|.++.+++-.+.++|.++++.+++++. .+||+.-+-  
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln  185 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence            45666777788999999987 8888888888754      5899999999999999999998888744 578875443  


Q ss_pred             -HHHHHHHHHHHH
Q 011747          113 -IPTVLMIGAIIL  124 (478)
Q Consensus       113 -i~~v~m~~~lii  124 (478)
                       |+...+.+++++
T Consensus       186 ~Isl~s~~~a~~~  198 (511)
T TIGR00806       186 IISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHH
Confidence             445555555544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=90.73  E-value=15  Score=37.58  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCc
Q 011747          349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAG  428 (478)
Q Consensus       349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~  428 (478)
                      .+|.+....+.++......+..-.+..+..+++.++.+.+.......+|..+++.+.....+.-      +|        
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw--------  162 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ--------  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence            4455555555666666667766667778888888888888888888888888886655443210      23        


Q ss_pred             chHHHHHHHHHHHHHHHHHHHH
Q 011747          429 RLDYFYFLIAGLGGLNIVYFLY  450 (478)
Q Consensus       429 ~~~~~f~~la~l~~v~~vif~~  450 (478)
                        ..-|++.+++.++..+..+.
T Consensus       163 --~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       163 --RPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             --HHHHHHHHHHHHHHHHHHHH
Confidence              23466677766665555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=90.52  E-value=19  Score=37.49  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHH
Q 011747          309 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS  388 (478)
Q Consensus       309 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~g  388 (478)
                      +.-+-+.+|+.+.+++.....=..            +..+....+...++++.|=-+...++..+++...|++-.+.-|.
T Consensus        76 gyk~gi~lgL~l~avg~~lF~pAa------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rln  143 (422)
T COG0738          76 GYKAGIVLGLLLYAVGAALFWPAA------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLN  143 (422)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhh------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHH
Confidence            334457778888777765432111            12344446667789999999999999999999999988887777


Q ss_pred             HHHHHhhHHHHHHHHHHHHh
Q 011747          389 LLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       389 l~~l~~a~g~~l~~~l~~~~  408 (478)
                      +---..++|..+++.+++..
T Consensus       144 l~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         144 LAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHHHhhhhHHHHHHHHHHHH
Confidence            77777788888887777543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=90.18  E-value=9.6  Score=38.90  Aligned_cols=60  Identities=12%  Similarity=-0.101  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      +.|.++...++.+++.....|..-+.+.+..  +.++..+|......++|..+++.+++...
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~  152 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLV  152 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            4555556667788887777776655555442  33455556666666777777777776554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=90.12  E-value=1.7  Score=45.25  Aligned_cols=116  Identities=21%  Similarity=0.169  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhHHHHHHHhhhcCC---CCC-CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHH
Q 011747          282 TIGLWLPFYDTVLVPALRKITKH---EGG-ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLI  357 (478)
Q Consensus       282 ~iill~Pl~~~i~~p~~~r~~~~---~~~-~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~  357 (478)
                      .+++..++.|.+.-|+.-....+   +.+ .+|  =+.+|.++.++++.......-.       +-.......|+...|+
T Consensus        41 ~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp--~~l~g~i~~~~~~~llf~~~p~-------~~~~~~~~~~~~~~~~  111 (428)
T PF13347_consen   41 LILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP--WILIGAILLALSFFLLFSPPPA-------GLSFTAKLVWLFVFYI  111 (428)
T ss_pred             HHHHHHHHhhhhcCCcEEEEEeeecccccccce--EeehhhHHHHHHHHHhhccccc-------hhhhhhHHHHHHHHHH
Confidence            45556677777777754422211   000 011  2457888888887766543110       0011246678888999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhcCh-hhHHHHHHHHHHHhhHHHHHHHHHHH
Q 011747          358 LMGFCEAFNIIGQIEFFNKQFPD-HMKSIANSLLFCSFGFASYLSSLLIT  406 (478)
Q Consensus       358 l~~lgEl~~~~~gle~~~~~aP~-~~ks~~~gl~~l~~a~g~~l~~~l~~  406 (478)
                      +..++--+....-.+...+.++. +.|....+.-.+...+|+.+.+.+..
T Consensus       112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~  161 (428)
T PF13347_consen  112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP  161 (428)
T ss_pred             HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999998889999999985 68888888888888888865555544

>PRK09528 lacY galactoside permease; Reviewed

Probab=89.99  E-value=8.1  Score=39.99  Aligned_cols=28  Identities=7%  Similarity=-0.069  Sum_probs=19.0

Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          382 MKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       382 ~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .++..+|......++|..+++.+++...
T Consensus       138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~  165 (420)
T PRK09528        138 RSGFEYGRARMWGSLGWALCAFIAGILF  165 (420)
T ss_pred             hccccchhhHHhhhHHHHHHHHHHHHHH
Confidence            3466677766667777777777776554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=89.34  E-value=7.6  Score=41.70  Aligned_cols=107  Identities=14%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      +|+.+...+...+..++..++-    .+.++       .+-+.++.++..++.++.+..               .+++++
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~----d~~GR-------k~~l~~~~~~~~iG~ii~~~a---------------~~~~~l  145 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLG----DRIGR-------KKTLLLAVVLFLIGAIIIALA---------------PSWYQL  145 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhhh-------HHHHHHHHHHHHHHHHHHHHh---------------hhHHHH
Confidence            4666666666666666555543    33322       123455555555555544432               367889


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI  405 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~  405 (478)
                      +..-++.|+|=-+.+....-++...||++.||.+.++..+...+|-.++-.++
T Consensus       146 ~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~  198 (513)
T KOG0254|consen  146 IVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN  198 (513)
T ss_pred             HHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998888884443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=89.21  E-value=24  Score=38.80  Aligned_cols=121  Identities=12%  Similarity=0.194  Sum_probs=69.5

Q ss_pred             hhccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 011747          259 KMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS  338 (478)
Q Consensus       259 ~md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~  338 (478)
                      +++.++| + .-...|+...+.+..-+..|++.++---+-||           .=+.+|.++..+++++.+-.+      
T Consensus        69 ~I~~diG-~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~------  129 (599)
T PF06609_consen   69 YINADIG-G-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ------  129 (599)
T ss_pred             HHHHhcC-C-CccchHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC------
Confidence            3555665 2 12335666667776666777776654222222           235667777777777655322      


Q ss_pred             hccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          339 AHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       339 ~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                               |+.-++...++.|+|--..... ...+.+..|.+-|....++-....-.....|+.+....
T Consensus       130 ---------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  130 ---------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             ---------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence                     2222456667777775444433 33467888999888777665555444444556665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=88.57  E-value=0.0005  Score=72.17  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe---eccchhHh
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD---SVSWVIGF  111 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~---~~g~~~~F  111 (478)
                      +...+.++-.+.++|.|+.-+....+..+.-+++      .|.....++..+.++|.+++..+...+..   +.+|+..+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence            6777888888999999999999999888766543      46667777888888998888765443322   35699998


Q ss_pred             HHHHHHHHHHH
Q 011747          112 GIPTVLMIGAI  122 (478)
Q Consensus       112 ~i~~v~m~~~l  122 (478)
                      .++++..++.+
T Consensus       175 ~~~~~~~l~~~  185 (451)
T PF00083_consen  175 IFGAIPSLLVL  185 (451)
T ss_pred             ccccccccccc
Confidence            88776555433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=87.95  E-value=13  Score=39.69  Aligned_cols=58  Identities=14%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI  405 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~  405 (478)
                      +...++..-++.|+..-+......=|....||++.||.+-.+.-+...+|..++..++
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            4455778889999999999999999999999999999999999999999999987665

>PTZ00207 hypothetical protein; Provisional

Probab=87.62  E-value=49  Score=36.45  Aligned_cols=83  Identities=13%  Similarity=0.047  Sum_probs=56.6

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHH-hhceeeeEEeeccchhHhH
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI-TQTVLVYIQDSVSWVIGFG  112 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~-~~~~~~~i~~~~g~~~~F~  112 (478)
                      .+.+.+++...+.++|.|.+-+.......+.|++       +|..+..+...+.++|+.+ +++...++.+  +|+..|.
T Consensus       118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            3567777788888899888877777778888852       3788999999999999975 5555555543  4655555


Q ss_pred             HHHH-HHHHHHHHH
Q 011747          113 IPTV-LMIGAIILF  125 (478)
Q Consensus       113 i~~v-~m~~~liif  125 (478)
                      +.++ +.+++++.+
T Consensus       189 ~l~vl~~vv~ll~~  202 (591)
T PTZ00207        189 FLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHH
Confidence            4443 333333333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=86.88  E-value=16  Score=38.14  Aligned_cols=121  Identities=13%  Similarity=0.124  Sum_probs=76.1

Q ss_pred             CcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc
Q 011747          267 KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ  346 (478)
Q Consensus       267 g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~  346 (478)
                      ++...+++...+..+-++.-+ ++..+.-++..|++.       -+-..+++++..+-.+..++...            .
T Consensus        43 ~~~LS~~q~~ll~aiPil~Ga-llRl~~g~l~drfGg-------R~~~~~s~~l~~IP~~~~~~a~~------------~  102 (417)
T COG2223          43 DFGLSEGQKGLLVAIPILVGA-LLRLPYGFLTDRFGG-------RKWTILSMLLLLIPCLGLAFAVT------------Y  102 (417)
T ss_pred             ccCCCHHHHHHHHHHHHHHhH-HHHHHHHhhhcccCc-------hHHHHHHHHHHHHHHHHHHHHcc------------C
Confidence            344788877666666554433 344444445556543       23345666666776666665542            1


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      -|.|+++..=++.|++-.- +..++..+.+-=|++.||..+|++- .-.+|..+...+..++.
T Consensus       103 ~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~  163 (417)
T COG2223         103 PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA  163 (417)
T ss_pred             CchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence            2335555555666666543 4457888899999999999999998 76777777666665544

>PRK09669 putative symporter YagG; Provisional

Probab=86.63  E-value=3.8  Score=42.92  Aligned_cols=83  Identities=7%  Similarity=-0.062  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-ChhhHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF-PDHMKSIANSLLFC  392 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a-P~~~ks~~~gl~~l  392 (478)
                      +.+|.+..+++++.......        .+ .....+|....|++.+++--+..+.-.+.....+ +++.|+...+....
T Consensus        83 il~~~~~~~i~~~l~f~~p~--------~~-~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~  153 (444)
T PRK09669         83 LLWFAIPFGVVCLLTFYTPD--------FG-ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFA  153 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCC--------CC-cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHH
Confidence            44566666666544332211        01 1245678888888887776677776778887776 44778888887777


Q ss_pred             HhhHHHHHHHHHH
Q 011747          393 SFGFASYLSSLLI  405 (478)
Q Consensus       393 ~~a~g~~l~~~l~  405 (478)
                      ...+|..+++.+.
T Consensus       154 ~~~~G~~i~~~~~  166 (444)
T PRK09669        154 LSFIGGLIVSVIA  166 (444)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777766544

>PRK11462 putative transporter; Provisional

Probab=86.43  E-value=36  Score=36.01  Aligned_cols=83  Identities=12%  Similarity=-0.002  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-hhhHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-DHMKSIANSLLFC  392 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-~~~ks~~~gl~~l  392 (478)
                      +.+|-+..+++++.......        .+ ...-..|....|++..++--+....-.++....++ .+.|+..++....
T Consensus        83 il~g~i~~~i~~~llf~~p~--------~s-~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~  153 (460)
T PRK11462         83 VLFGALPFGIVCVLAYSTPD--------LS-MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFV  153 (460)
T ss_pred             HhHHHHHHHHHHHHHHhCCC--------CC-cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            45566666666655443321        00 11236788899999999999999999999999998 6889999998888


Q ss_pred             HhhHHHHHHHHHH
Q 011747          393 SFGFASYLSSLLI  405 (478)
Q Consensus       393 ~~a~g~~l~~~l~  405 (478)
                      ...+|..+++.+.
T Consensus       154 ~~~iG~~~~~~~~  166 (460)
T PRK11462        154 LATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888877766554

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=86.41  E-value=25  Score=37.47  Aligned_cols=47  Identities=13%  Similarity=0.059  Sum_probs=39.1

Q ss_pred             HHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747          364 AFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG  410 (478)
Q Consensus       364 l~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~  410 (478)
                      ..+...+++++++.+.++.|+..+|+-..+.+.+..+++.+++...+
T Consensus       127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            44566788999999999999999999999888888888888775543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=86.21  E-value=12  Score=39.59  Aligned_cols=82  Identities=10%  Similarity=0.019  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-ChhhHHHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF-PDHMKSIANSLLFC  392 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a-P~~~ks~~~gl~~l  392 (478)
                      +.+|.+..+++++.......         .......+|....|++..++--+..+.-.+.....+ .++.|+...+.-..
T Consensus        80 il~g~i~~~i~~~llf~~p~---------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~  150 (473)
T PRK10429         80 ILIGTLANSVVLFLLFSAHL---------FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRF  150 (473)
T ss_pred             HhhhhHHHHHHHHHHHcCCC---------CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHH
Confidence            45566777777654432210         011234678888899998888888888999999998 47888888887455


Q ss_pred             HhhHHHHHHHHH
Q 011747          393 SFGFASYLSSLL  404 (478)
Q Consensus       393 ~~a~g~~l~~~l  404 (478)
                      ...+|..+.+.+
T Consensus       151 ~~~ig~~~~~~~  162 (473)
T PRK10429        151 FASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.68  E-value=19  Score=38.11  Aligned_cols=124  Identities=11%  Similarity=0.093  Sum_probs=65.7

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHH
Q 011747          308 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN  387 (478)
Q Consensus       308 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~  387 (478)
                      ++...|+..++++..+-++.....-. +      +.+.....+..+..-++.+++..+...+.+.++...-|+.+++   
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-~------~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a---  141 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVK-V------QTSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSA---  141 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheee-e------cCCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHH---
Confidence            45567899887765555554443211 1      1111123444555667788898888888888887666554444   


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 011747          388 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC  451 (478)
Q Consensus       388 gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~  451 (478)
                        ++...|++..++..+.-+....   .+++ .   +...+ ...||.+-+++.++..+.|..+
T Consensus       142 --~~~G~g~aGv~~s~~~ii~~a~---~~~~-~---~~~~~-a~~YF~~a~~v~l~~i~~~~~l  195 (437)
T TIGR00939       142 --VMSGQGLAGVLTSLAMILVKAS---GNDS-H---GLKKS-ALGYFGTPCVVQLICIVCYLLL  195 (437)
T ss_pred             --HHhcchhHHHHHHHHHHHHHHh---cCCc-c---chhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence              4444555555544332221110   0000 0   12222 2336666666677777766654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=84.40  E-value=11  Score=39.71  Aligned_cols=84  Identities=20%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHH---hhcChhhHHHHHHHH
Q 011747          314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFN---KQFPDHMKSIANSLL  390 (478)
Q Consensus       314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~---~~aP~~~ks~~~gl~  390 (478)
                      +.+|-++.+++.+..+.....           ..+........++.++|..+..+.+=+.+.   ++-|++ +|-.++..
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~-----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~  129 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPAS-----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFV  129 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHH
Confidence            566666666555555544321           122222333445555555555555444443   334566 88999999


Q ss_pred             HHHhhHHHHHHHHHHHHhh
Q 011747          391 FCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       391 ~l~~a~g~~l~~~l~~~~~  409 (478)
                      +....+|+.++..+++...
T Consensus       130 ~~~~~~G~lv~~~l~G~l~  148 (433)
T PF03092_consen  130 WGVRSVGSLVGSLLSGPLL  148 (433)
T ss_pred             HHHHHHHHHHHHHhhhhhh
Confidence            9999999998887776443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=83.24  E-value=1.9  Score=42.76  Aligned_cols=81  Identities=9%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc---chhHhHHHH
Q 011747           39 LVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIPT  115 (478)
Q Consensus        39 ~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g---~~~~F~i~~  115 (478)
                      -|.++.++++.........-+.++...+|+      +...+|...|-.-|+|-.+.+++++.+.+..|   |--+|.+..
T Consensus       355 Py~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  355 PYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            356777777777666555677777777765      58999999999999999999999999988644   555666655


Q ss_pred             HHHHHHHHHH
Q 011747          116 VLMIGAIILF  125 (478)
Q Consensus       116 v~m~~~liif  125 (478)
                      ..|.+-.+..
T Consensus       429 ~~~aL~svgi  438 (459)
T KOG4686|consen  429 GLMALTSVGI  438 (459)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=82.59  E-value=1.1  Score=47.88  Aligned_cols=86  Identities=20%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~i  113 (478)
                      +.+.+++.-+++++..|...+..-++.+++-+++      +...+|.+|...--..+++||++.+.+.+..| .+++|..
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            4445666666899999999999999999999876      35889999999999999999999998887665 8899998


Q ss_pred             HHHHHHHHHHHHH
Q 011747          114 PTVLMIGAIILFL  126 (478)
Q Consensus       114 ~~v~m~~~liifl  126 (478)
                      -.+.++++++++.
T Consensus       453 l~~lf~~gl~ll~  465 (477)
T PF11700_consen  453 LLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888888774

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.33  E-value=5.4  Score=44.63  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe------------
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD------------  103 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~------------  103 (478)
                      +.++++|..+.++|.    .-+.++|---.||...  +++....+.++|..--+|..+|.++.++..+            
T Consensus       237 ~llff~~q~l~GIG~----Tpi~tlGisYiDDnvk--~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i  310 (735)
T KOG3626|consen  237 FLLFFLGQLLLGIGA----TPIFTLGISYIDDNVK--KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI  310 (735)
T ss_pred             HHHHHHHHHHhhcCC----CCCccCCCcccccccc--ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence            446777888888877    4455555555554432  2356778888998888888888766543211            


Q ss_pred             ------ec-cchhHhHHHHHHHHHHHHHHHhcccce
Q 011747          104 ------SV-SWVIGFGIPTVLMIGAIILFLVGKKLY  132 (478)
Q Consensus       104 ------~~-g~~~~F~i~~v~m~~~liifl~g~~~~  132 (478)
                            .+ .||.+|++++..++++.+.++..-|.+
T Consensus       311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence                  12 499999999999998888877644433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=80.96  E-value=49  Score=35.31  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCh-hhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccC
Q 011747          346 QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD-HMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTND  424 (478)
Q Consensus       346 ~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~-~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~  424 (478)
                      ..+..|....|.+++++--++...--+......+. +.|....+.++....+|+.+...+...+..         ++.++
T Consensus       109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~---------~~g~~  179 (467)
T COG2211         109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK---------LFGGG  179 (467)
T ss_pred             CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCC
Confidence            36778888899999999888888888888777665 788899999999999998887766643322         11110


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011747          425 IDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ  462 (478)
Q Consensus       425 ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~  462 (478)
                         .+...|+....+++++..+.++.+.+..|-|..+.
T Consensus       180 ---~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~  214 (467)
T COG2211         180 ---DKALGYQGTALVLGVIGVILLLFCFFNVKERVVET  214 (467)
T ss_pred             ---cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence               11344667777777777777777777766666543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=80.69  E-value=1.3  Score=47.82  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhHHH
Q 011747           36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIP  114 (478)
Q Consensus        36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~i~  114 (478)
                      .+.+..--+++++..|.+-.+.+....|....+      +..++|.+..+..-+++++++-+++++.+..| |...|..+
T Consensus       388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~  461 (509)
T KOG2504|consen  388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC  461 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence            344444455666667777666667777877765      58999999999999999999999999988776 99999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 011747          115 TVLMIGAIILFLVGK  129 (478)
Q Consensus       115 ~v~m~~~liifl~g~  129 (478)
                      ++.++++....+.-+
T Consensus       462 g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  462 GLCFLLSAVLLLILR  476 (509)
T ss_pred             ChHHHHHHHHHHHhH
Confidence            999999997766543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=80.54  E-value=37  Score=35.49  Aligned_cols=81  Identities=15%  Similarity=0.087  Sum_probs=52.7

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHH
Q 011747          309 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS  388 (478)
Q Consensus       309 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~g  388 (478)
                      +-..|+.+..+++.++|++.++.+               ++++-+..-++.+++--+.-.+-+++....- +    ...+
T Consensus        87 ~y~~Ri~~~~~l~~~g~l~va~~~---------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~-~----~~l~  146 (402)
T PF02487_consen   87 PYWIRILICVALSAAGMLLVAFSP---------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYG-K----SSLS  146 (402)
T ss_pred             cchHHHHHHHHHHHHHHhheeecc---------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcC-c----cccc
Confidence            456799999999999998665432               3344445555555555555555666644332 2    3578


Q ss_pred             HHHHHhhHHHHHHHHHHHHhh
Q 011747          389 LLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       389 l~~l~~a~g~~l~~~l~~~~~  409 (478)
                      .|...+|.+..+|........
T Consensus       147 ~wssGTG~aGl~Ga~~y~~lT  167 (402)
T PF02487_consen  147 AWSSGTGGAGLVGALYYLGLT  167 (402)
T ss_pred             cccCCcChhhHHHHHHHHHHH
Confidence            888888888888876665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=80.05  E-value=22  Score=33.35  Aligned_cols=96  Identities=18%  Similarity=0.132  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCC--CCcchHHHHHHH
Q 011747          278 ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP--MSQVSVFWLAPQ  355 (478)
Q Consensus       278 ~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g--~~~~s~~wlv~~  355 (478)
                      .|.+.+.+..++..+..++.++|+       .+..++..+++...++....+.............+  +.........+.
T Consensus       107 ~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~  179 (205)
T PF01891_consen  107 ANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAGDYPWMALVQAYLPS  179 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence            466666666666677677666553       23345566666556665544433221111111101  122344456688


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhcCh
Q 011747          356 LILMGFCEAFNIIGQIEFFNKQFPD  380 (478)
Q Consensus       356 y~l~~lgEl~~~~~gle~~~~~aP~  380 (478)
                      ++++++.|-++.-....+..+.-|+
T Consensus       180 ~~~l~~~Eg~ltg~~v~~l~~~rP~  204 (205)
T PF01891_consen  180 HLLLAFPEGFLTGMVVTFLVVYRPE  204 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8999999999999999999988885

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	478
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		3e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 126/341 (36%), Gaps = 39/341 (11%)
Query: 54  RPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXXXXYIQDSVSWVIGFGI 113
           +P    F  DQFD +     +     F+ +Y                +  +    + FGI
Sbjct: 127 KPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183
Query: 114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRR---------LTLPQGQ 164
           P VLM  A + F +G+K Y+ + PE     G   V+ +A   +          L L  G 
Sbjct: 184 PGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGV 243
Query: 165 MDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELK--PDGTPVNQWRLCSIQQ 222
              + +   P   +       +     F+   A +      K  PD              
Sbjct: 244 SAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAA------------ 291
Query: 223 VEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMIT 282
           V+ V+ +              +   Q+ +  + QA   N  + P++   P  +  ++ + 
Sbjct: 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA---NDMVKPQW-FEPAMMQALNPLL 347
Query: 283 IGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLH 342
           + L +PF + VL PA+ ++      +T L+++G G+  + LS IV G ++        + 
Sbjct: 348 VMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQL------MMD 398
Query: 343 PMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK 383
             S +S+FW      L+ F E       +EF   Q P  MK
Sbjct: 399 GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	478
2xut_A	524	Proton/peptide symporter family protein; transport	4e-95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  296 bits (759), Expect = 4e-95
 Identities = 90/441 (20%), Positives = 161/441 (36%), Gaps = 24/441 (5%)

Query: 33  SMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVIL 92
              +     GL L+++G+GGI+P    F  DQFD             F+ +Y T      
Sbjct: 106 EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD---QSNKSLAQKAFDMFYFTINFGSF 162

Query: 93  ITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAA 152
                +  +  +    + FGIP VLM  A + F +G+K Y+ + PE     G   V+ +A
Sbjct: 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSA 222

Query: 153 YKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNN-ELKPDGTP 211
              +        +             + L  +P       L  A ++V            
Sbjct: 223 LLTKVEGKGNIGLVL--ALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280

Query: 212 VNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIP 271
               +      V+ V+ +++I+ ++A      +   Q+ +  + QA  M +         
Sbjct: 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFE 336

Query: 272 PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLV 331
           P  +  ++ + + L +PF + VL PA+ ++      +T L+++G G+  + LS IV G +
Sbjct: 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTI 393

Query: 332 ERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 391
           +      +       +S+FW      L+ F E       +EF   Q P  MK    S   
Sbjct: 394 QLMMDGGSA------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWT 447

Query: 392 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 451
            S    +    L    V   T        +   +       F+F  AG   L  + F   
Sbjct: 448 LSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFALY 502

Query: 452 ARRYRYKSGIQSLEDQNDLEL 472
           AR Y+ +   +      +L  
Sbjct: 503 ARSYQMQDHYRQATGSENLYF 523

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 57/384 (14%), Positives = 125/384 (32%), Gaps = 43/384 (11%)

Query: 25  FGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 84
            G    A       L   + L+ IGTG ++P         +D    E  +  ++ F+ + 
Sbjct: 97  LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD----EHDRRRDAGFSIFV 152

Query: 85  TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSG 144
               +   I   ++   Q++  + + F +  + M   ++++  G K  +           
Sbjct: 153 FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP-------HY 205

Query: 145 IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNE 204
           +      A ++ +  L +  +   G        + ++  + L           ++     
Sbjct: 206 LRPTDPLAPEEVKPLLVKVSLAVAGF-------IAIIVVMNLVGWNSLPAYINLLTIVAI 258

Query: 205 LKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGT-FTVSQAMKMNRH 263
             P            +   E ++ ++  IP++ A ++      Q         A +++  
Sbjct: 259 AIPVFYFAWMISSVKVTSTEHLR-VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS 317

Query: 264 LGPK--FQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIF 320
             P   FQ + P  + + +     LW          A +K        +   +  +G++F
Sbjct: 318 WFPVSWFQSLNPLFIMLYTPFFAWLWT---------AWKKN-----QPSSPTKFAVGLMF 363

Query: 321 SILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD 380
           + LS ++  +        A      +VS  WL     L+   E       +    K  P 
Sbjct: 364 AGLSFLLMAI------PGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK 417

Query: 381 HMKSIANSLLFCSFGFASYLSSLL 404
              S   S+ F S    S L++ L
Sbjct: 418 AFNSQMMSMWFLSSSVGSALNAQL 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 76/510 (14%), Positives = 146/510 (28%), Gaps = 168/510 (32%)

Query: 25  FGQCKSANSMQLGVLVMGLGLLSIGTGGIRP--CSIPFGVDQFDATTDEGVKGINSFF-N 81
              C S  +    VL M   LL      I P   S                  +     +
Sbjct: 189 LKNCNSPET----VLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 82  WYYTTFTVVILITQTVLVYIQDSV--SWVI-GFGIP-TVLMI---GAIILFLVGKKLY-- 132
             Y    +++L           +V  +     F +   +L+      +  FL        
Sbjct: 241 KPYEN-CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 133 VLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRF 192
            L     ++     + L+  Y    L              D P +  VL+  P       
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY----LDCRPQ---------DLPRE--VLTTNPRRL---- 330

Query: 193 LNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKC--LIKIIPIWAAGIISLTSISQQG 250
               ++I    E   DG  +  W        + V C  L  II    + +  L     + 
Sbjct: 331 ----SIIA---ESIRDG--LATW-----DNWKHVNCDKLTTII---ESSLNVLEPAEYRK 373

Query: 251 TFTVSQAMKMNRHLG--PK-FQIPPGTVGVISMITIGLW--LPFYDTVLVPALRKITKHE 305
            F           L   P    IP   + +       +W  +   D ++V  + K+ K+ 
Sbjct: 374 MF---------DRLSVFPPSAHIPTILLSL-------IWFDVIKSDVMVV--VNKLHKY- 414

Query: 306 GGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAF 365
              +L+++       SI S+ +   V+     + H              + I+    + +
Sbjct: 415 ---SLVEKQPKESTISIPSIYLELKVKLENEYALH--------------RSIV----DHY 453

Query: 366 NIIGQIEF--FNKQFPD---------HMKSIAN-------SLLFCSFGF----------- 396
           NI    +       + D         H+K+I +        ++F  F F           
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 397 ---ASYLSSLLITIV----HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFL 449
              +  + + L  +     + +       + L N I    LD   FL       N++   
Sbjct: 514 WNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAI----LD---FLPK--IEENLI--- 560

Query: 450 YCARRYRYKSGIQ-SLEDQNDLELVDPTKQ 478
                 +Y   ++ +L  +++    +  KQ
Sbjct: 561 ----CSKYTDLLRIALMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	478
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.82
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.25
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.78
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.43
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.21
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.1
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.02
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.57
2xut_A	524	Proton/peptide symporter family protein; transport	97.46
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	95.54
2cfq_A	417	Lactose permease; transport, transport mechanism,	90.51

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=2.9e-23  Score=219.58  Aligned_cols=405  Identities=21%  Similarity=0.290  Sum_probs=238.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|++.|+..++++|.+++++   +.+..+.|++++.+.|+|..+++.+.+++.+..||+..|.+.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            56778888899999999999999999999998653   123467889999999999999999999998888999999999


Q ss_pred             HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747          115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN  194 (478)
Q Consensus       115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (478)
                      ++..+++.+.++..++.+.+.+|++++..+..+.+..+.+++.... .   ... ...+..........+.+......+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  259 (524)
T 2xut_A          185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK-G---NIG-LVLALIGGVSAAYALVNIPTLGIVA  259 (524)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCCC--------------------CTTH-H---HHH-HHHHHHHHHHHHHTGGGTTTTCSSH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhccc-C---ccc-hhhhhhhhhhhhhhhcccchhhhhh
Confidence            9988888877766555444333433332222222222222211000 0   000 0000000000000000000000000


Q ss_pred             hhhhhcccCCCCCCCCCCccc-------ccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCC
Q 011747          195 KAAMIVDNNELKPDGTPVNQW-------RLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK  267 (478)
Q Consensus       195 ~a~~~~~~~~~~~~g~~~~~~-------~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g  267 (478)
                      .+.......   .+.....+|       +.++..+.+++|+.+..+++++....++..+.|..+.+..+...++.+.   
T Consensus       260 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  333 (524)
T 2xut_A          260 GLCCAMVLV---MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---  333 (524)
T ss_dssp             HHHHHHHHH---HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---
T ss_pred             hhhhhhhhh---hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---
Confidence            000000000   000000011       0122234456777878888888888999999999888877776665432   


Q ss_pred             cccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcc
Q 011747          268 FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQV  347 (478)
Q Consensus       268 ~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~  347 (478)
                      + ++.+.+..++++..++..|+.+++.+|.++|+++   ++++.+++.+|+++.+++++..+..+..+.      .....
T Consensus       334 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~  403 (524)
T 2xut_A          334 W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQLMMD------GGSAL  403 (524)
T ss_dssp             S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------TTCCC
T ss_pred             e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCc
Confidence            2 4667788888899999999999988887776542   356778899999999998877665543211      11246


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccccc-CCC
Q 011747          348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DID  426 (478)
Q Consensus       348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~-~ln  426 (478)
                      +.+|+++.+++.++++.+..+...+++.+.+|++.||..+|++.+...+|+.+++.+.+.+.+.+    .++|.++ +++
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----~~~~~~~~~~~  479 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMS  479 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----HHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccccccccccc
Confidence            78899999999999999999999999999999999999999999999999999999988765421    1124321 122


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccccCc
Q 011747          427 AGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND  469 (478)
Q Consensus       427 ~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~  469 (478)
                      .  ..+.|++.++++++..++++.+.+++++++++++++|+++
T Consensus       480 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (524)
T 2xut_A          480 V--TAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQATGSEN  520 (524)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             c--cccHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
Confidence            1  1223788888999988888888888887776655544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.82  E-value=3.9e-19  Score=186.18  Aligned_cols=356  Identities=14%  Similarity=0.152  Sum_probs=231.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|...|+..++++|.+++++.    +|..++++++.+.|+|..+++.+.+++.+..||++.|.++
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~  182 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA  182 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            456788888999999999999999999999987532    4778999999999999999999999998889999999999


Q ss_pred             HHHHHHHHHHHHhcccceeeeC--CCCCch--hhHHHHHHH--------------HHHhcccCCCCCCCCCCccccCCCC
Q 011747          115 TVLMIGAIILFLVGKKLYVLVE--PEGSIF--SGIGQVLVA--------------AYKKRRLTLPQGQMDHHGIFYDPPP  176 (478)
Q Consensus       115 ~v~m~~~liifl~g~~~~~~~~--p~g~pl--~~~~~vl~~--------------a~~~~~~~~~~~~~~~~~~~~~~~~  176 (478)
                      ++..+++++.++..++.+..++  +..++.  .+..+....              ....+..   .         ++   
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~---~---------~~---  247 (491)
T 4aps_A          183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN---S---------LP---  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC---C---------TT---
T ss_pred             HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCc---c---------cc---
Confidence            8888888877765443332211  111111  111110000              0000000   0         00   


Q ss_pred             cccccccCCccchh-hhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHH
Q 011747          177 KLFVLSKLPLTHQF-RFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVS  255 (478)
Q Consensus       177 ~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~  255 (478)
                               ..... .............         ..|+. ......++++.....++++....+|..+.+..+.+..
T Consensus       248 ---------~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (491)
T 4aps_A          248 ---------AYINLLTIVAIAIPVFYFA---------WMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT  308 (491)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHH---------HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHH
T ss_pred             ---------cchhhhhHHHHHHHHHHHH---------HHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence                     00000 0000000000000         00000 0112245677778888998999999999999887766


Q ss_pred             HHhh-hccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 011747          256 QAMK-MNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG  334 (478)
Q Consensus       256 qa~~-md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~  334 (478)
                      +..+ .+.+.     .+.+.+..++.+..++..|+..++.    +|.+++  .+....++.+|+++.+++++..+.....
T Consensus       309 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~----~r~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (491)
T 4aps_A          309 FAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLW----TAWKKN--QPSSPTKFAVGLMFAGLSFLLMAIPGAL  377 (491)
T ss_dssp             HHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHH----HHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHHH----HHHhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6543 33221     5677888999999999999888754    344332  2466788999999999998877766532


Q ss_pred             hhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q 011747          335 RRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTAR  414 (478)
Q Consensus       335 ~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~  414 (478)
                      ..      .....+.+|+++.+++.++++.+..+...+++.+..|++.||.++|++.....+|..+++.+.+.+.+.   
T Consensus       378 ~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---  448 (491)
T 4aps_A          378 YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---  448 (491)
T ss_dssp             CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---
T ss_pred             cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            10      123468899999999999999999999999999999999999999999999999999999887655431   


Q ss_pred             CCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011747          415 HGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ  462 (478)
Q Consensus       415 ~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~  462 (478)
                                    .....|+.+++++++..++++.+.++.+++.+++
T Consensus       449 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (491)
T 4aps_A          449 --------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQGV  482 (491)
T ss_dssp             --------------STTHHHHHTHHHHHHHHHHHHHC-----------
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                          1235677888888888888887777776654443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.25  E-value=1.2e-10  Score=119.51  Aligned_cols=313  Identities=10%  Similarity=-0.056  Sum_probs=173.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~i  113 (478)
                      +.+.++++..+.++|.|...+...+++.|.++++      +|.++++++..+.++|.++++.+.+++.+..| |++.|.+
T Consensus       118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~  191 (451)
T 1pw4_A          118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  191 (451)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            4556778888999999999999999999999754      58999999999999999999998888767788 9999999


Q ss_pred             HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747          114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL  193 (478)
Q Consensus       114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (478)
                      .++..++..++.+...+    ++|+...               ..  +.   +.    .+.+.+.               
T Consensus       192 ~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~--~~---~~----~~~~~~~---------------  228 (451)
T 1pw4_A          192 PAFCAILVALFAFAMMR----DTPQSCG---------------LP--PI---EE----YKNDYPD---------------  228 (451)
T ss_dssp             HHHHHHHHHHHHHHHCC----CSSTTTC---------------CC--SC---TT----TCCC------------------
T ss_pred             HHHHHHHHHHHHHhhcc----CCHhhcC---------------CC--Ch---hh----hcccccc---------------
Confidence            88776665554433221    1111100               00  00   00    0000000               


Q ss_pred             hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747          194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG  273 (478)
Q Consensus       194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~  273 (478)
                      +..      +   +... ...+   ++....+..+-..+..+.+....++..+....+.   ....+....+    .++.
T Consensus       229 ~~~------~---~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g----~~~~  288 (451)
T 1pw4_A          229 DYN------E---KAEQ-ELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW---SPTYLKEVKH----FALD  288 (451)
T ss_dssp             --------------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH---HHHHBTTBSC----CCHH
T ss_pred             cch------h---hhhc-cccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcC----CCHH
Confidence            000      0   0000 0000   0000001101111222222233333322222221   1222332222    2332


Q ss_pred             ---ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHH-HHHHHHHHHhhhhhhhhccCCCCcchH
Q 011747          274 ---TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSI-LSMIVAGLVERGRRASAHLHPMSQVSV  349 (478)
Q Consensus       274 ---~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~-ls~~~~~~~~~~~~~~~~~~g~~~~s~  349 (478)
                         .+.+...+..++..++..++    .+|..+     ...+.+.++.++.. ++++.....             ...+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  346 (451)
T 1pw4_A          289 KSSWAYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN-------------PAGNP  346 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC-------------CTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh-------------cccCH
Confidence               33444444444444444433    233310     11122334444333 333322111             01356


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhH-HHHHHHHHHHHhhcccccCCCCcccccCCCCc
Q 011747          350 FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF-ASYLSSLLITIVHGVTARHGHPDWLTNDIDAG  428 (478)
Q Consensus       350 ~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~-g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~  428 (478)
                      ++.+...++.+++-....+....++.+..|++.++..+|++.....+ |..+++.+.+.+.+..      +         
T Consensus       347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g---------  411 (451)
T 1pw4_A          347 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G---------  411 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C---------
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C---------
Confidence            66677778888888888888889999999999999999999999998 9999998887655321      1         


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhc
Q 011747          429 RLDYFYFLIAGLGGLNIVYFLYCARR  454 (478)
Q Consensus       429 ~~~~~f~~la~l~~v~~vif~~~~~~  454 (478)
                       ....|+..+++.++..++++...++
T Consensus       412 -~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          412 -WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             3445677777777777766655443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.78  E-value=3e-07  Score=93.70  Aligned_cols=87  Identities=15%  Similarity=0.146  Sum_probs=71.1

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE-eecc------
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-DSVS------  106 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~-~~~g------  106 (478)
                      .+.+.++++..+.++|.|...+...++++|.++++      +|.++++++..+.++|.++++.+.+++. +..+      
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  188 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV  188 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            45778888999999999999999999999999765      4788899999999999999999888876 5444      


Q ss_pred             -------------------chhHhHHHHHHHHHHHHHHH
Q 011747          107 -------------------WVIGFGIPTVLMIGAIILFL  126 (478)
Q Consensus       107 -------------------~~~~F~i~~v~m~~~liifl  126 (478)
                                         |++.|.+.++...+..++++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                               89999776665555554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.43  E-value=8.8e-08  Score=95.95  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP  114 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~  114 (478)
                      +.+.++++..+.++|.|...+...++..|.++++      +|.++++++..+.++|..+++.+.+++.+..||+..|.+.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            5667777888899999999999999999998754      4788999999999999999999999998888999999987


Q ss_pred             HHHHHHHHH
Q 011747          115 TVLMIGAII  123 (478)
Q Consensus       115 ~v~m~~~li  123 (478)
                      ++..++..+
T Consensus       161 ~~~~~~~~~  169 (375)
T 2gfp_A          161 LVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            776666554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.21  E-value=5.9e-06  Score=85.55  Aligned_cols=83  Identities=13%  Similarity=0.039  Sum_probs=61.5

Q ss_pred             hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe--------ec
Q 011747           34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD--------SV  105 (478)
Q Consensus        34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~--------~~  105 (478)
                      .+.+.++++-.+.++|.|+.-+...++++|..+++      +|.+...++..++++|.+++..+...+..        ..
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  197 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD  197 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence            46788899999999999999999999999987653      57888888899999999888765443322        23


Q ss_pred             cchhHhHHHHHHHHHHH
Q 011747          106 SWVIGFGIPTVLMIGAI  122 (478)
Q Consensus       106 g~~~~F~i~~v~m~~~l  122 (478)
                      +|++.+.+..+..++.+
T Consensus       198 ~~~~~~~~~~~~~~~~~  214 (491)
T 4gc0_A          198 GWRYMFASECIPALLFL  214 (491)
T ss_dssp             HHHHHHHTTHHHHHHHH
T ss_pred             hhHHHhhhhhhhhhhhh
Confidence            46666665554444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.10  E-value=0.00012  Score=74.23  Aligned_cols=112  Identities=8%  Similarity=-0.018  Sum_probs=84.3

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP  354 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~  354 (478)
                      +.+...+..++..|+...+.    .|.+       .-+-+.+|.++.+++.+.......            .-+.++++.
T Consensus        66 ~~~~~~~~~~i~~~~~G~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~  122 (438)
T 3o7q_A           66 IQSAFYFGYFIIPIPAGILM----KKLS-------YKAGIITGLFLYALGAALFWPAAE------------IMNYTLFLV  122 (438)
T ss_dssp             HHHHHHHHHHTTHHHHHHHH----HHSC-------HHHHHHHHHHHHHHHHHHHHHHHH------------TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHH----HHhc-------chHHHHHHHHHHHHHHHHHHhccc------------cccHHHHHH
Confidence            44455555555666655543    4543       223467788888777766543221            146777888


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ..++.|++.-...+....++.+..|++.|+..+|++....++|..+++.++....
T Consensus       123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.02  E-value=0.00015  Score=73.73  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=83.3

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+...+..|+...+    ..|+++       -+-+.+|.++.+++.+..++....           ..+.++++
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~  123 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSV----SDRSNP-------RVFLPAGLILAAAVMLFMGFVPWA-----------TSSIAVMF  123 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHSCH-------HHHHHHHHHHHHHHHHHHHHCHHH-----------HSSSSHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHH----HHhcCc-------hHHHHHHHHHHHHHHHHHHhhhhc-----------cccHHHHH
Confidence            34455555555566655544    345432       234567778888877766653210           03456777


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ...++.|++.-...+....++.+..|++.|+..+|++....++|..+++.+++..
T Consensus       124 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          124 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999998888654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.92  E-value=0.00032  Score=72.46  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=97.0

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhh-hcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRK-ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL  352 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r-~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl  352 (478)
                      ++.+...+...+..|+..++.    .| .++       -+-+.+|+++.+++.+..++.               .+.+++
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~----dr~~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  111 (491)
T 4aps_A           58 SIMAIYASMVYLSGTIGGFVA----DRIIGA-------RPAVFWGGVLIMLGHIVLALP---------------FGASAL  111 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHTSCH-------HHHHHHHHHHHHHHHHHHHSC---------------CSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hccccc-------hHHHHHHHHHHHHHHHHHHHh---------------hhHHHH
Confidence            344555566666666665543    44 321       223566777776666544321               345667


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcChhh--HHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcch
Q 011747          353 APQLILMGFCEAFNIIGQIEFFNKQFPDHM--KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL  430 (478)
Q Consensus       353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~--ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~  430 (478)
                      +...++.|+++-...+....++.+..|++.  |+..++++.....+|..+++.+++.+.+..      +|          
T Consensus       112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~----------  175 (491)
T 4aps_A          112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY----------  175 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH----------
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH----------
Confidence            788899999999999999999999999988  888888899999999999998887665321      23          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011747          431 DYFYFLIAGLGGLNIVYFLYCARRYRY  457 (478)
Q Consensus       431 ~~~f~~la~l~~v~~vif~~~~~~~~~  457 (478)
                      ..-|+..+++.++..++++...+++..
T Consensus       176 ~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          176 HVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            334555666666666666666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.90  E-value=2e-05  Score=80.50  Aligned_cols=87  Identities=11%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH-HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747          349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDA  427 (478)
Q Consensus       349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  427 (478)
                      .++++...++.+++.....+....+..+..|++.||..+|+ +....++|+.+++.+.+...+..               
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------------  376 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------------  376 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence            44555555666777666666778899999999999999998 57777888888888876543210               


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHh
Q 011747          428 GRLDYFYFLIAGLGGLNIVYFLYC  451 (478)
Q Consensus       428 ~~~~~~f~~la~l~~v~~vif~~~  451 (478)
                       .....|...++++++..++.+..
T Consensus       377 -g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          377 -GFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHhh
Confidence             12345666777777666655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.57  E-value=0.00067  Score=67.34  Aligned_cols=109  Identities=19%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747          275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP  354 (478)
Q Consensus       275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~  354 (478)
                      +.+...+..++..|+..++    .+|.++|       +-+.+|.++.+++.+..+..               .+.++++.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~   93 (375)
T 2gfp_A           40 VMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTT---------------SSLTVLIA   93 (375)
T ss_dssp             HHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------ccHHHHHH
Confidence            4455555555666655543    3555432       22457777777776655543               24566778


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      ..++.+++.....+....++.+..|++.|+..+|++....++|..+++.+++...
T Consensus        94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999998887554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.46  E-value=0.0016  Score=67.75  Aligned_cols=113  Identities=19%  Similarity=0.176  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH---
Q 011747          313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL---  389 (478)
Q Consensus       313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl---  389 (478)
                      -+.+|.++.+++.+..++..              .+.++++...++.|+++....|...+++.+..|++.|+..+++   
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  152 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFE--------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDM  152 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS--------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHH
Confidence            35667777777665544321              2567777888999999999999999999999999999877666   


Q ss_pred             HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011747          390 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY  455 (478)
Q Consensus       390 ~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~  455 (478)
                      +.....+|..+++.+++.+.+..      +|          ...|++.+++.++..++++...+++
T Consensus       153 ~~~~~~~g~~~g~~~~~~l~~~~------g~----------~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          153 FYFTINFGSFFASLSMPLLLKNF------GA----------AVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             HHHHHHHHHHHHHHTSTHHHHTS------CH----------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc------cH----------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888888887776544210      12          3455666666666555554444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=95.54  E-value=0.13  Score=52.52  Aligned_cols=63  Identities=13%  Similarity=0.036  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747          347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH  409 (478)
Q Consensus       347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~  409 (478)
                      -+.+.++..-++.|+|+-...+.+..++.+.+|++.|+..++++.....+|..++..+.....
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            466778888999999999999999999999999999999999999999999998887775544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=90.51  E-value=0.029  Score=56.67  Aligned_cols=82  Identities=7%  Similarity=0.084  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHH-HHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHH
Q 011747           40 VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW-YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLM  118 (478)
Q Consensus        40 ~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~-fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m  118 (478)
                      .+...+.+++.+.+-+...++..|.++++      .|.+++.+ +..+.++|+.++|.+.+++.+..||...|.+.++..
T Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~  389 (417)
T 2cfq_A          316 VILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA  389 (417)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence            33333445555544455567777777643      46677877 466777999999999999888889999999888887


Q ss_pred             HHHHHHHHh
Q 011747          119 IGAIILFLV  127 (478)
Q Consensus       119 ~~~liifl~  127 (478)
                      +++.++.+.
T Consensus       390 l~~~~~~~~  398 (417)
T 2cfq_A          390 LGFTLISVF  398 (417)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            877776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.09
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.63
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.3
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	95.16

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=7.5e-10  Score=110.34  Aligned_cols=86  Identities=13%  Similarity=0.035  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe-eccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~-~~g~~~~F~i  113 (478)
                      +...++++..+.++|.|..-+...++++|.++++      +|.++++++..+.++|..+++.+.+.+.. ..+|+..|.+
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            4456777778889999999999999999999754      48889999999999999999877665544 3589999988


Q ss_pred             HHHHHHHHHHHHH
Q 011747          114 PTVLMIGAIILFL  126 (478)
Q Consensus       114 ~~v~m~~~liifl  126 (478)
                      .++..++..++.+
T Consensus       189 ~~~~~~~~~~~~~  201 (447)
T d1pw4a_         189 PAFCAILVALFAF  201 (447)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHH
Confidence            7766665555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.1e-07  Score=91.73  Aligned_cols=114  Identities=11%  Similarity=0.072  Sum_probs=81.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH
Q 011747          311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL  390 (478)
Q Consensus       311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~  390 (478)
                      .+-+.++.++.+++++.....               .+.++.+...++.+++..+..+...+++.+..|++.|+..+|+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (417)
T d1pv7a_         289 KNALLLAGTIMSVRIIGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             ccchhhhHHHHHHhhhccccc---------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHH
Confidence            334556666666655543321               35677778889999999999999999999999999999999985


Q ss_pred             H-HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011747          391 F-CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY  455 (478)
Q Consensus       391 ~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~  455 (478)
                      + +..++|..+++.+.+...+..                .....|+..++++++..++.+++-++-
T Consensus       354 ~~~~~~~g~~i~~~~~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         354 FCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            4 667888888888876654321                123456677777777776666554433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=9.4e-06  Score=79.71  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747          274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA  353 (478)
Q Consensus       274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv  353 (478)
                      ++.+...+...+..|+...+.    .|.++       -+-+.+|+++.+++.+..+++...           ..+.++++
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~----Dr~g~-------r~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  120 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVS----DRSNP-------RVFLPAGLILAAAVMLFMGFVPWA-----------TSSIAVMF  120 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHSCH-------HHHHHHHHHHHHHHHHHHHHCHHH-----------HSSSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHcCc-------hHHHHHHHHHHHHHHhhccccchh-----------hhhHHHHH
Confidence            445555555566666665543    45431       234567888888887776655421           14566788


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747          354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV  408 (478)
Q Consensus       354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~  408 (478)
                      ...++.++++-...+....++.+..|++.|+..+|++.....+|..+++.+....
T Consensus       121 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            8889999999999999999999999999999999999999999999888776654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0021  Score=60.46  Aligned_cols=87  Identities=7%  Similarity=0.065  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHH-HhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747           35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT-TFTVVILITQTVLVYIQDSVSWVIGFGI  113 (478)
Q Consensus        35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~-~iNiGa~~~~~~~~~i~~~~g~~~~F~i  113 (478)
                      +.+.+++...+.+++.|...+...++..|.++++      .|.+.+.+++. +.++|..+++.+.+++.+++||+..|.+
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            4566777788889999999999999999998754      47788888764 5569999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 011747          114 PTVLMIGAIILFLV  127 (478)
Q Consensus       114 ~~v~m~~~liifl~  127 (478)
                      .++..+++.++.++
T Consensus       385 ~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         385 LGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777776666544