Citrus Sinensis ID: 011756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Secondary Structure (PSIPRED)
cHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHccccccHHHHHHHHcccccEEEcc
Coil and Loop (DISEMBL)
MILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGpavksewglssseesLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLagaglgsghVFFSWFmefvppsnrgkwMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVfmpesprylctkgritdAHNILDKIAQfnqtslpsgnltsdgtndldeefstseetpllssarKRTTVRKSGFSSFLmlfsprffKTTILLWVLYFGNSFVYYGIVLLASelsgsqskcsssillsenvqdASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIanifapeiyptsmrstgAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNtidgvsnskqvlvva
Flexible Loop (DISEMBL)
MILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQfnqtslpsgnLTSDGTNDLDEefstseetpllssarkrttvrKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFetkgkelvntidgvsnskqvlvva
Low Complexity Region (SEG)
MILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGlssseeslITTVVFAGMMSILGGALVTFVAGLLSAFSPNYisllilrglagaglgsgHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAselsgsqskcsssillsENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTaailllealivlsvvvilliPFETKGKELVNTIDGVSNSKQVLVVA
Disordered region (IsUnstruct)
*ILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQF*******************************************GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELS*****CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGV**********
Disordered Region (DISOPRED)
***AIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG******************************FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID**SNS*******
Disordered Region (DISEMBL)
MILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND***********************RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL*********SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Disordered Region (DISPRO)
MILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSL*************************************SGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVS*********
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	478	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.960	0.918	0.506	1e-121
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.891	0.777	0.352	2e-67
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.880	0.768	0.347	1e-65
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.880	0.768	0.347	1e-65
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.891	0.777	0.340	2e-65
P30638	520	Putative transporter ZK63	yes	no	0.882	0.811	0.325	1e-63
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.889	0.775	0.343	2e-61
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.889	0.775	0.345	3e-61
Q1LVS8	506	Putative transporter SVOP	no	no	0.884	0.835	0.297	9e-48
Q6PDF3	494	Putative transporter SVOP	no	no	0.880	0.852	0.293	9e-48

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/492 (50%), Positives = 328/492 (66%), Gaps = 33/492 (6%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           +T+DEAL  MGFGKFQ   LAY+G+GW +EAME+M+LSFVGPAV+S W LS+ +ESLIT+
Sbjct: 8   FTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITS 67

Query: 70  VVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVFAGM+                   +  A+VTFVAG LSAFSPNY+ L+ILR L G GL
Sbjct: 68  VVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGL 127

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G G V  SW++EF+P  +RG WMVVFS FWT G++ EA+LAW+VMP L WRWLLA S++P
Sbjct: 128 GGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVP 187

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSG-NLTSDGTNDLDEEF 231
           + +LL+F  +  ESPRYL  +GR  +A  IL+KIA+ N+T LP G   +   T   + + 
Sbjct: 188 SSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKN 247

Query: 232 STSEETPLLSSARKRTTV----------RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF 281
             +E T LL +      V          ++ GF S L L SP   K T+LLWV++FGN+F
Sbjct: 248 IPTENTHLLKAGESGEAVAVSKIVLKADKEPGF-SLLALLSPTLMKRTLLLWVVFFGNAF 306

Query: 282 VYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVG 341
            YYG+VLL +EL+ S ++C  +     N  D + Y +VFI SFAE PGLL +A +VDR+G
Sbjct: 307 AYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLG 365

Query: 342 RKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS 401
           RK SM  M    CIFLLPL++ QS  + T LL G R+     F +  I+APEIYPT++R+
Sbjct: 366 RKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRT 425

Query: 402 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 461
           TG GV  +VGRIGG++CPLVAVGLV  CHQT A+LL E +I++S + + L PFET G++L
Sbjct: 426 TGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDL 485

Query: 462 VNTIDGVSNSKQ 473
               D +S SK+
Sbjct: 486 T---DSISASKE 494

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 245/482 (50%), Gaps = 56/482 (11%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 70  VVFAGMM---SILGGA--------------LVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVF GMM   S+ G                + T   G+LSAF+P Y  +L+LRGL G G+
Sbjct: 128 VVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G      + + EF+P  +R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P
Sbjct: 188 GGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALP 247

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
             +  I   ++PES RY    G    A   L +IA  N   +P G L             
Sbjct: 248 LMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKL------------- 294

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
                 ++S    R  +R         LFSP+F  TT+LLW ++F N+F YYG+VLL +E
Sbjct: 295 ------IVSRQEDRGKIRD--------LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 293 LSGSQSKCSSSILLSENVQDASV---------YINVFITSFAELPGLLTAALLVDRVGRK 343
           L  +   CS S          S+         Y ++  T+ +E PGLL    ++DRVGRK
Sbjct: 341 LFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRK 400

Query: 344 LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG 403
            +M I FI      L L       +LT  L  AR F  G F  A ++ PE+YPT+ R+ G
Sbjct: 401 KTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPEVYPTATRALG 460

Query: 404 AGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELV 462
            G    + R+G ++ P +A V L +S + T  +L+     VL+ V    +P ETKG+ L 
Sbjct: 461 LGTCSGMARVGALITPFIAQVMLESSIYLT--VLVYSGCCVLAAVASCFLPIETKGRGLQ 518

Query: 463 NT 464
            +
Sbjct: 519 ES 520

Xenopus laevis (taxid: 8355)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  251 bits (640), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 251/487 (51%), Gaps = 66/487 (13%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 70  VVFAGMMS--ILGG---------------ALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVF GMMS   L G                L T   G+LSAF+P Y  +L+LRGL G G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G      + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
             +  +   ++PES RY    G    A   L +IA  N   +P G L             
Sbjct: 248 LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL------------- 294

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
                 ++S    R  +R         LF+P F  TT+LLW ++F N+F YYG+VLL +E
Sbjct: 295 ------IISRQEDRGKMRD--------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 293 L-------------SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDR 339
           L                ++KCS   L  E + +   Y+++  T+ +E PG+L    ++DR
Sbjct: 341 LFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDR 396

Query: 340 VGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS 398
           +GRK +M + F IF    LL  + +  N+ LT LL  AR F  G F  A ++ PE+YPT+
Sbjct: 397 LGRKKTMALCFVIFSFCSLLLFICVGRNV-LTLLLFIARAFISGGFQAAYVYTPEVYPTA 455

Query: 399 MRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK 457
            R+ G G    + R+G ++ P +A V L +S + T A+       +L+ +    +P ETK
Sbjct: 456 TRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETK 513

Query: 458 GKELVNT 464
           G+ L  +
Sbjct: 514 GRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  251 bits (640), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 251/487 (51%), Gaps = 66/487 (13%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 70  VVFAGMMS--ILGG---------------ALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVF GMMS   L G                L T   G+LSAF+P Y  +L+LRGL G G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G      + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
             +  +   ++PES RY    G    A   L +IA  N   +P G L             
Sbjct: 248 LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL------------- 294

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
                 ++S    R  +R         LF+P F  TT+LLW ++F N+F YYG+VLL +E
Sbjct: 295 ------IISRQEDRGKMRD--------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 293 L-------------SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDR 339
           L                ++KCS   L  E + +   Y+++  T+ +E PG+L    ++DR
Sbjct: 341 LFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDR 396

Query: 340 VGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS 398
           +GRK +M + F IF    LL  + +  N+ LT LL  AR F  G F  A ++ PE+YPT+
Sbjct: 397 LGRKKTMALCFVIFSFCSLLLFICVGRNV-LTLLLFIARAFISGGFQAAYVYTPEVYPTA 455

Query: 399 MRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK 457
            R+ G G    + R+G ++ P +A V L +S + T A+       +L+ +    +P ETK
Sbjct: 456 TRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETK 513

Query: 458 GKELVNT 464
           G+ L  +
Sbjct: 514 GRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 164/482 (34%), Positives = 244/482 (50%), Gaps = 56/482 (11%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 70  VVFAGMMS--ILGG---------------ALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVF GMMS   L G                L T   G+LSAF+P Y  +L+LRGL G G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G      + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
             +  +   ++PES RY    G    A   L +IA  N   +P G L             
Sbjct: 248 LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL------------- 294

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
                 ++S    R  +R         LF+P F  TT+LLW ++F N+F YYG+VLL +E
Sbjct: 295 ------IISRQEDRGKMRD--------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 293 LSGSQSKCS---------SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK 343
           L  +   CS         +   L+        Y+++  T+ +E PG+L    ++DR+GRK
Sbjct: 341 LFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRK 400

Query: 344 LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG 403
            +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G
Sbjct: 401 KTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALG 460

Query: 404 AGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELV 462
            G    + R+G ++ P +A V L +S + T A+       +L+ +    +P ETKG+ L 
Sbjct: 461 LGTCSGMARVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQ 518

Query: 463 NT 464
            +
Sbjct: 519 ES 520

Bos taurus (taxid: 9913)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  244 bits (623), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 243/486 (50%), Gaps = 64/486 (13%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           +T+DEA+  +GFG+FQ      +G+ W ++AME+M+LS + PA+  EWG+SS +++L+TT
Sbjct: 67  FTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTT 126

Query: 70  VVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
            VF+GMM                  +    LV  + G++S  SP++  LL  RGL G G+
Sbjct: 127 CVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGI 186

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G      + + EF+P + R K +V+  +FW  G+V EA LA+ VM    WR L+ LS++P
Sbjct: 187 GGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLP 246

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
             +  +   ++PES R+    G    A   L   A+ N+  LP+G L S           
Sbjct: 247 LGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVSS---------- 296

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
               T   S +R               L SP   KTTILLW ++   +F YYG+VL  + 
Sbjct: 297 ----TKAGSESR----------GDIANLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTV 342

Query: 293 LSGSQSKCSSSILLSENVQ-------DASVYINVFITSFAELPGLLTAALLVDRVGRKLS 345
           L  S  +C    L S   Q         S Y ++  T+ AE PGL+   L+++  GRK +
Sbjct: 343 LFQSHDECHGG-LFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKT 401

Query: 346 MTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAG 405
           M + +    IF   L        +T L+  AR F  G F  A ++ PE+YPT++R+ G G
Sbjct: 402 MALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLG 461

Query: 406 VAYAVGRIGGMVCPLVA-------VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG 458
              A+ RIG +V P +A       + L    + TAAI        L ++  L +P ETKG
Sbjct: 462 TCSAMARIGAIVTPFIAQVASEKSLSLPIGIYGTAAI--------LGLIASLSLPIETKG 513

Query: 459 KELVNT 464
           ++++++
Sbjct: 514 RQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 247/483 (51%), Gaps = 58/483 (12%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 70  VVFAGMMS--ILGGALV---------------TFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVF GMMS   L G +                T   G+LSAF+P Y  +L+LRGL G G+
Sbjct: 128 VVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G      + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAP 247

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
             V  +   ++PES RY    G    A   L +IA  N   +P G L             
Sbjct: 248 LLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL------------- 294

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
                 ++S    R  +R         LF+P F  TT+LLW ++F N+F YYG+VLL +E
Sbjct: 295 ------IISRQEDRGKMRD--------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 293 LSGSQSKCS---------SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK 343
           L  +   CS         +   L+        Y+++  T+ +E PG+L    ++DR+GRK
Sbjct: 341 LFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRK 400

Query: 344 LSMTIMF-IFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST 402
            +M + F IF    LL  + +  N+ LT LL  AR F  G F  A ++ PE+YPT+ R+ 
Sbjct: 401 KTMALCFVIFSLCSLLLFICIGRNV-LTLLLFIARAFISGGFQAAYVYTPEVYPTATRAL 459

Query: 403 GAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 461
           G G    + R+G ++ P +A V L +S + T A+       +L+ +    +P ETKG+ L
Sbjct: 460 GLGTCSGMARVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRAL 517

Query: 462 VNT 464
             +
Sbjct: 518 QES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  236 bits (602), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 167/483 (34%), Positives = 247/483 (51%), Gaps = 58/483 (12%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 70  VVFAGMMS--ILGG---------------ALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVF GMMS   L G                L T   G+LSAF+P Y  +L+LRGL G G+
Sbjct: 128 VVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G      + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAP 247

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
             +  +   ++PES RY    G    A   L +IA  N   +P G L             
Sbjct: 248 LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL------------- 294

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
                 ++S    R  +R         LF+P F  TT+LLW ++F N+F YYG+VLL +E
Sbjct: 295 ------IISRQEDRGKMRD--------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 293 LSGSQSKCS---------SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK 343
           L  +   CS         +   L+        Y+++  T+ +E PG+L    ++DR+GRK
Sbjct: 341 LFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRK 400

Query: 344 LSMTIMF-IFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST 402
            +M + F IF    LL  + +  N+ LT LL  AR F  G F  A ++ PE+YPT+ R+ 
Sbjct: 401 KTMALCFIIFSLCSLLLFICIGRNV-LTLLLFIARAFISGGFQAAYVYTPEVYPTATRAL 459

Query: 403 GAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 461
           G G    + R+G ++ P +A V L +S + T A+       +L+ V    +P ETKG+ L
Sbjct: 460 GLGTCSGMARVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAGVASCFLPIETKGRAL 517

Query: 462 VNT 464
             +
Sbjct: 518 QES 520

Mus musculus (taxid: 10090)

>sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1

 Score =  191 bits (486), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 226/487 (46%), Gaps = 64/487 (13%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           YT++EA+  +GFG F  L     G     EAME+M+L+ V P ++ EW L   + +L++T
Sbjct: 49  YTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQVALVST 108

Query: 70  VVFAGMMSILGGALVTFVAG-------------------LLSAFSPNYISLLILRGLAGA 110
           +VF G M  + G L  ++A                     L++FS +Y   + LR + G 
Sbjct: 109 MVFFGFM--VCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCMVGC 166

Query: 111 GLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSA 170
           G+ +    F    EF+P   R   + + S FW  GS+    L   V+P + WRW++  S 
Sbjct: 167 GVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIRFSV 226

Query: 171 IPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE 230
           IP+ VL+   +F+PES R+  + G I  A + L +IA+ N   LP G L      +    
Sbjct: 227 IPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMNNGVLPEGELREPEVTE---- 282

Query: 231 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLA 290
                   L+SSA +R                     T++LLW  +F  SF YYG VL +
Sbjct: 283 --RGNAVTLISSAFRR---------------------TSLLLWYSWFVASFSYYGSVLSS 319

Query: 291 SELSGSQSKCSSSILLSENVQ-------------DASVYINVFITSFAELPGLLTAALLV 337
           SEL      C +   L   ++             ++  Y  + I+   E+  +    +L+
Sbjct: 320 SELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLNIILL 379

Query: 338 DRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL-LTALLSGARMFSMGTFIIANIFAPEIYP 396
           + VGRK SM I+ +    F + LV + + +L  T LL   R      F +  I+  E+YP
Sbjct: 380 NIVGRKYSMVILLLLSAFFFM-LVNICTTMLGFTILLFLLRSVVSMNFNVVYIYTAEVYP 438

Query: 397 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET 456
           TS+RS G G   +  RIGGM+ P +A  L++     A      A I+ ++ V  L P ET
Sbjct: 439 TSVRSIGMGFCTSFSRIGGMIAPFIAQVLMSKSVILALSPFATACIICAIGVFFL-PIET 497

Query: 457 KGKELVN 463
           +G+ L+ 
Sbjct: 498 RGRALLQ 504

Danio rerio (taxid: 7955)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  191 bits (486), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 144/490 (29%), Positives = 243/490 (49%), Gaps = 69/490 (14%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           +T+++A+  +GFG+F        G     EAME+M+++ V P ++ EW L + + + +TT
Sbjct: 32  FTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTT 91

Query: 70  VVFAGMM--SILGGAL-----------VTFVAG----LLSAFSPNYISLLILRGLAGAGL 112
           +VF G M  SIL G L           ++F+ G    LL++FSP+YI  + LR + G G+
Sbjct: 92  MVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGV 151

Query: 113 GSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI 171
            SGH        EF+P   RG  + +   FW  GS+   ++A +V+P + WRWL+ +++I
Sbjct: 152 -SGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASI 210

Query: 172 PAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF 231
           P  +L++   F+PES R+  + G    A N L+ IA+ N++ +P G L            
Sbjct: 211 PGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLVE---------- 260

Query: 232 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAS 291
                 P+L   R R          F  L   ++ +TT+ +W+++ G SF YYG++L ++
Sbjct: 261 ------PILEK-RGR----------FADLLDSKYLRTTLQIWIIWLGISFAYYGVILASA 303

Query: 292 EL------SGSQSKCSSSILLSENVQDA--------------SVYINVFITSFAELPGLL 331
           EL       GS+S+    ++  E   D+              S Y  + I++  E+    
Sbjct: 304 ELLERDLVCGSKSESEPEVV--ETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNP 361

Query: 332 TAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFA 391
              L ++ +GR+LS++I      +F L L    S+  L   L   R      F    I+ 
Sbjct: 362 LNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYT 421

Query: 392 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL 451
            E+YPT MR+ G G + ++ RIG MV P ++  L+++     A+ L  ++ V+  +    
Sbjct: 422 AEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLMSASF-LGALCLFSSVCVVCAISAFT 480

Query: 452 IPFETKGKEL 461
           +P ETKG+ L
Sbjct: 481 LPIETKGRAL 490

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
224118680	492	predicted protein [Populus trichocarpa]	0.983	0.955	0.631	1e-161
255573803	498	sugar transporter, putative [Ricinus com	0.985	0.945	0.610	1e-158
255574249	497	sugar transporter, putative [Ricinus com	0.983	0.945	0.611	1e-157
383932368	482	MFS [Gossypium hirsutum]	0.953	0.946	0.622	1e-155
224118546	493	predicted protein [Populus trichocarpa]	0.972	0.943	0.607	1e-155
225443470	495	PREDICTED: synaptic vesicle 2-related pr	0.964	0.931	0.569	1e-136
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.958	0.936	0.528	1e-135
224122710	503	predicted protein [Populus trichocarpa]	0.974	0.926	0.533	1e-134
224118676	492	predicted protein [Populus trichocarpa]	0.958	0.930	0.567	1e-133
356523480	558	PREDICTED: synaptic vesicle 2-related pr	0.951	0.815	0.541	1e-133

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 308/488 (63%), Positives = 374/488 (76%), Gaps = 18/488 (3%)

Query: 6   QRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEES 65
            +LVYTLD+AL   GFGKFQ L LAY+GLGWF+EAME++ILSFVGPAVKS+W LSS++ES
Sbjct: 5   DQLVYTLDDALASAGFGKFQFLVLAYAGLGWFAEAMEILILSFVGPAVKSQWNLSSTQES 64

Query: 66  LITTVVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLA 108
           L++TVVFAGM+                   LG  ++T  AG LS FSPNY+SLLILR L 
Sbjct: 65  LLSTVVFAGMLVGAYSWGLFSDYCGRRQGFLGITIITSAAGFLSTFSPNYVSLLILRCLV 124

Query: 109 GAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 168
           G GLG G VF SWF+EFVP S+RG WMVVFSTFWTFG++ EAALAWIV+P L WRWLLA 
Sbjct: 125 GVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAF 184

Query: 169 SAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD 228
           S++P+   L F   +PESPRYL  KGRIT+AHNIL+KIAQ NQ+ LP G L SD T  LD
Sbjct: 185 SSLPSIAQLFFYWIVPESPRYLSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLD 244

Query: 229 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVL 288
           EE + S+ TPLLSS R   +  KSGFSSF+MLFS +  +TT+LLW+L+FGN+F YYGI+L
Sbjct: 245 EESAPSKYTPLLSSTRNLVSDFKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIIL 304

Query: 289 LASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI 348
           L SELS  + KC+S++L SEN+QD S+YINVFITS AELPG+L +A++VDR GRKLSM  
Sbjct: 305 LTSELSSEEGKCASTVLRSENLQDDSLYINVFITSLAELPGILLSAIIVDRFGRKLSMAF 364

Query: 349 MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY 408
           MF+  CIFLLPLV  Q   L TALL GARM ++GTF +A I+APE+YPT +R+TGAGVA 
Sbjct: 365 MFVLACIFLLPLVFHQHATLTTALLFGARMCAIGTFTVAAIYAPEVYPTVIRATGAGVAN 424

Query: 409 AVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGV 468
           AVGRIGGMVCPLVAVGLV  CH   AI+L E +IV+SVV +LL PFET G+EL +++   
Sbjct: 425 AVGRIGGMVCPLVAVGLVAGCHLKEAIILFEVVIVISVVCVLLFPFETSGRELSDSL-AA 483

Query: 469 SNSKQVLV 476
           S+ KQV+V
Sbjct: 484 SDPKQVVV 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 299/490 (61%), Positives = 359/490 (73%), Gaps = 19/490 (3%)

Query: 6   QRLV--YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSE 63
           +RL+  YTLDEAL  +GFGKFQGL L Y+GLG F+EAME+MILSFVGPAVKSEWGLSSS+
Sbjct: 8   ERLLCKYTLDEALAAVGFGKFQGLVLVYAGLGSFAEAMEMMILSFVGPAVKSEWGLSSSQ 67

Query: 64  ESLITTVVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRG 106
           ESL+T+VVFAGM+                  ILG  L+T  AG LS F PNYISL+ LR 
Sbjct: 68  ESLLTSVVFAGMLFGAYSWGLISDNYGRRKGILGSTLLTCGAGSLSTFCPNYISLITLRC 127

Query: 107 LAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLL 166
           L G GLG G VF SWF+EFVP S+RG WMVV+ST WTFG++ EA LAWIVMP L+WRWLL
Sbjct: 128 LVGIGLGGGPVFSSWFLEFVPASHRGTWMVVYSTSWTFGTIFEATLAWIVMPRLSWRWLL 187

Query: 167 ALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND 226
           A S++P+ VLL+F    PESPRYLCTKGR TDAH IL+KIA  NQ  LP G L SD T  
Sbjct: 188 AFSSLPSIVLLLFYRLAPESPRYLCTKGRFTDAHRILEKIALLNQAKLPGGILVSDSTTG 247

Query: 227 LDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI 286
           LDEE S+    PLLS ARKR +  KS FSSF MLFS R  KTT+LLWVLYFGNSF+YYGI
Sbjct: 248 LDEESSSLSHQPLLSLARKRVSSFKSAFSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGI 307

Query: 287 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM 346
           +LL SELSG Q +C S+    EN QD ++YI++FITS AELPG++ +A+ VDR GRK SM
Sbjct: 308 ILLTSELSGRQDECRSATSSLENHQDENLYIDIFITSLAELPGIILSAITVDRFGRKRSM 367

Query: 347 TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGV 406
             MF+  CIFLLPLV+ QS +L T+ L GARM ++GTF IA I+ PE+YPT +R+TG+GV
Sbjct: 368 IFMFVAACIFLLPLVSHQSAVLRTSFLFGARMCAIGTFTIACIYCPELYPTPVRTTGSGV 427

Query: 407 AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID 466
           A A GRIGGM+CPLVAVGLVT CH  A I++ E +  +S + +L  P+ETKG EL +++ 
Sbjct: 428 ASAAGRIGGMICPLVAVGLVTGCHVEAGIIVFEVVAAISAICLLFFPYETKGCELSDSVG 487

Query: 467 GVSNSKQVLV 476
                   LV
Sbjct: 488 PFDPKHNNLV 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/489 (61%), Positives = 365/489 (74%), Gaps = 19/489 (3%)

Query: 6   QRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEES 65
           Q LVY LDEAL  +GFGKFQG  L Y+GLGWFSEAMEVMILSFVGPAVK +W LSS++ES
Sbjct: 8   QNLVYNLDEALAAVGFGKFQGFVLVYAGLGWFSEAMEVMILSFVGPAVKLKWELSSTQES 67

Query: 66  LITTVVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLA 108
           L++TVVF GM+                  +L   ++T  AG +SAFSPNY++L++LR L 
Sbjct: 68  LLSTVVFGGMLIGACTWGLISDNYGRRKCVLSITVITSGAGFISAFSPNYLTLVVLRCLV 127

Query: 109 GAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 168
           G GLG  HVF SWF+EF+P S+RGKWMV+FSTFWT G + EA+LAWIVM  L WRWLLAL
Sbjct: 128 GFGLGGTHVFLSWFLEFIPTSHRGKWMVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLAL 187

Query: 169 SAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD 228
           S +P+F LL+F   +PESPRYLC KGR   AH +L+KIA  NQ  LP G L S G    D
Sbjct: 188 STVPSFSLLLFYGLVPESPRYLCLKGRTAQAHQVLEKIALVNQKELPPGMLVSYGKIKED 247

Query: 229 EEFSTSEET-PLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV 287
           EE S  E+   LL   R++ +  KSGFSSF +LFS    +TT+LLWVL+FGN F YYGI+
Sbjct: 248 EEISALEQKRSLLFMDREKISTLKSGFSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGII 307

Query: 288 LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT 347
           LL S+LS S+SKCS +IL S+N QD S++++V ITSFAELPG+L +A++VDR GRKLSM 
Sbjct: 308 LLTSQLSSSESKCSLTILHSQNPQDESLFMDVLITSFAELPGILLSAMMVDRFGRKLSMA 367

Query: 348 IMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVA 407
           IMFIF  IFLLPLV+ QS+IL T LL GARMFS+GTF +A+I+APE+YPTS+RSTGAG A
Sbjct: 368 IMFIFAWIFLLPLVSRQSDILTTGLLFGARMFSLGTFTVASIYAPELYPTSIRSTGAGTA 427

Query: 408 YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDG 467
            AVGRIGGMVCPLVAV LV++CH  AAI+L E +I ++VV ILL PFET G+EL + +  
Sbjct: 428 SAVGRIGGMVCPLVAVALVSNCHFKAAIILFEVVIAITVVCILLFPFETSGRELSDRL-A 486

Query: 468 VSNSKQVLV 476
              SKQ LV
Sbjct: 487 APESKQDLV 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/474 (62%), Positives = 351/474 (74%), Gaps = 18/474 (3%)

Query: 9   VYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLIT 68
           +YTLDEAL  +GFGKFQG  L Y+GLGWF+EAME+MILSF+G AVKSEW LSS +ESL++
Sbjct: 8   LYTLDEALETVGFGKFQGFVLGYAGLGWFAEAMEIMILSFIGQAVKSEWQLSSGQESLLS 67

Query: 69  TVVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAG 111
           TVVFAGM+                   L  ++VTF AGLLS FSPNY++L +LRGL G G
Sbjct: 68  TVVFAGMLLGANTWGLLSDNYGRRKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFG 127

Query: 112 LGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI 171
           LG   VF SWF+EF+P SNRG WMVVFSTFWTFGS+ EA LAWIVMP L WRW+LA SA+
Sbjct: 128 LGGSSVFLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAV 187

Query: 172 PAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF 231
           P+F LLI     PESPRYLC KG  +DA  IL+KIA  NQT LP G L S  +ND DEE 
Sbjct: 188 PSFALLILYGVAPESPRYLCMKGNTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEES 247

Query: 232 STSEET-PLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLA 290
           + SE T PLL S  K TT  KSGFSSF MLFS +  +TT+LLWVL+FG+SF YYGI+LL 
Sbjct: 248 APSENTAPLLPSLSKSTTQSKSGFSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLT 307

Query: 291 SELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF 350
           S+LS  QS C  S+  + N QD  +Y+N FITS AELPGLL +A+LVDRVGRK SM IMF
Sbjct: 308 SKLSSGQSTCFPSLQSNINPQDDGLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMF 367

Query: 351 IFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAV 410
               IFL PL+  Q  +L T LL GARM +MGTF +A+I++PE+YPTS+R+TGAGVA A+
Sbjct: 368 GLAFIFLTPLLIQQPAVLTTCLLFGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAI 427

Query: 411 GRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 464
           GRIGGMVCPLVAVGLV  CHQTAA+ L    IV+S+V I L P++TKG+EL +T
Sbjct: 428 GRIGGMVCPLVAVGLVNECHQTAAVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/482 (60%), Positives = 359/482 (74%), Gaps = 17/482 (3%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           YTLDEAL  +GFGKFQGL LAY+GLGWF+EAME+M+LSFVGP VKS+WGLSS +ESL++T
Sbjct: 8   YTLDEALACLGFGKFQGLVLAYAGLGWFAEAMELMLLSFVGPTVKSQWGLSSGQESLLST 67

Query: 70  VVFAGMM-SILGGALVT----------------FVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVFAGM+       LV+                F +GLLSAFSPNY SL+I+R L G GL
Sbjct: 68  VVFAGMLVGAYSWGLVSDNCGRRQAIHFSLPYIFQSGLLSAFSPNYESLVIIRCLVGLGL 127

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G   V  SWF+EFVP  +RGKWMVVFSTFWT G++ EA+LAW+VM  L+WRWLLA S++P
Sbjct: 128 GGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWLLAFSSLP 187

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
           +  LL+F   +PESPRYLC KGRI DAH IL KIA  NQ+ LP G L  D T   +E+ +
Sbjct: 188 SIALLLFYGIVPESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTVGQEEKSA 247

Query: 233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE 292
            S+ TPLLSS RK     KS FSSF MLFS    +TT+LLWVL FGN F YYGI+LL SE
Sbjct: 248 PSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYYGIILLTSE 307

Query: 293 LSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIF 352
           LS  Q KC S+IL SEN+Q+ S+YINVF+TS AELPGLL +A++VDR+GRKLSM +M + 
Sbjct: 308 LSSQQGKCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKLSMALMLVL 367

Query: 353 VCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR 412
            CIFL PL+   S  L TA+L GARM  MG+F IA ++APE+YPT++R+TGAGVA +VGR
Sbjct: 368 GCIFLFPLLFNVSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGAGVASSVGR 427

Query: 413 IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSK 472
           IGGM+CPLVAVGLVT C+ T AI+L E ++ +S    LL PFETKG+EL +++D VS+S 
Sbjct: 428 IGGMICPLVAVGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSDSVDHVSDSI 487

Query: 473 QV 474
           QV
Sbjct: 488 QV 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/488 (56%), Positives = 345/488 (70%), Gaps = 27/488 (5%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           YT+D+AL  MGFG FQ L LAY+G+GW SEAME+M+LSFVGPAV+S WGLSS EESLIT+
Sbjct: 8   YTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHEESLITS 67

Query: 70  VVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVFAGM+                   L  A+VT  AG LSAF+PNYISL+ILR L G GL
Sbjct: 68  VVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRCLVGLGL 127

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G G V  SWF+EF+P  NRG WMV+FS FWT G++ EA+LAW VMP L WRWLLALSA+P
Sbjct: 128 GGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAWCVMPTLGWRWLLALSALP 187

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
           + +LLIF    PESPRYLC KGR T+A ++L+KIA+ N+  LP G L SD    + E  +
Sbjct: 188 SLLLLIFYRVTPESPRYLCLKGRTTEALSVLEKIARMNRAELPPGILVSDHQVGVPENSN 247

Query: 233 TSEETPLLS------SARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI 286
            SE+  LLS      S+ K       G SS  ML SP+  ++T+LLW+++FGN+F YYG+
Sbjct: 248 PSEDMKLLSPEADSGSSHKDIDSNMGGISSLFMLLSPKLLRSTLLLWMVFFGNAFSYYGL 307

Query: 287 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM 346
           VLL SEL+  Q+KC  + L SE  QD + Y +VFITSFAE PGLL +A  VD +GRKLSM
Sbjct: 308 VLLTSELNNEQNKCGVAELQSEKTQDIN-YKDVFITSFAEFPGLLLSAATVDILGRKLSM 366

Query: 347 TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGV 406
           + MF   CIFLLPLV  Q   L TALL GAR+    TF +  I+APEIYPTS+R+TG GV
Sbjct: 367 SAMFFLCCIFLLPLVFHQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSVRTTGVGV 426

Query: 407 AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID 466
           A +VGRIGGM+CPLVAVGLV  CHQ AA++L E +I +S + ++L PFETKG+EL +T+ 
Sbjct: 427 ASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGRELKDTL- 485

Query: 467 GVSNSKQV 474
             S+S+QV
Sbjct: 486 --SSSEQV 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/481 (52%), Positives = 330/481 (68%), Gaps = 23/481 (4%)

Query: 6   QRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEES 65
           Q   Y++D+AL   GFG++Q L L+Y+G+G  +EAME+M+LSFVGP+V+ EW L+S +ES
Sbjct: 5   QSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQES 64

Query: 66  LITTVVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLA 108
           +IT++VF GM+                   L  A+VT  AG LSAF+PNY+SL+ LR L 
Sbjct: 65  MITSIVFVGMLIGAYTWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLV 124

Query: 109 GAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 168
           G GLG G V  SWF+EFVP   RG WMVVFS FWT G++ EA+LAW VMP   WRWLLAL
Sbjct: 125 GIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLAL 184

Query: 169 SAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD 228
           SA+P+FVLL+F V  PESPR+LC KGR+T+A ++L+K+A+ N   LPSG L SD   +LD
Sbjct: 185 SAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELD 244

Query: 229 EEFSTSEETPLLSSARKRTTVRKSGFSSF-----LMLFSPRFFKTTILLWVLYFGNSFVY 283
           E  STSE T LL+ A +  T+ +   SSF       L SP+  + T+LLW+ +FGN+F Y
Sbjct: 245 E-LSTSESTTLLADAEEDDTIIEDKVSSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSY 303

Query: 284 YGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK 343
           YGIVLL SELS     C+   + S +  DAS+Y NVFI+SFAE+PG   +A++VDR+GRK
Sbjct: 304 YGIVLLTSELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRK 363

Query: 344 LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG 403
           LSM  M    C+FL PL+  +++IL    L GAR+    +F I  I+APEIYPTS+R+TG
Sbjct: 364 LSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTG 423

Query: 404 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN 463
            GVA +VGRIGG++CPLVAV LV SC QT AILL E +I LS + +   PFETKG  L +
Sbjct: 424 IGVASSVGRIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLND 483

Query: 464 T 464
           T
Sbjct: 484 T 484

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122710|ref|XP_002330449.1| predicted protein [Populus trichocarpa] gi|222871861|gb|EEF08992.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/493 (53%), Positives = 334/493 (67%), Gaps = 27/493 (5%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           YT+D+A+  MGFGKFQ L L Y+G+GW SE+ME+MILSFVGPAVKS+W L+S +ESLIT+
Sbjct: 8   YTVDDAILAMGFGKFQYLVLLYAGMGWVSESMEMMILSFVGPAVKSDWDLTSQQESLITS 67

Query: 70  VVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVFAGM+                   L  A++TF AG LSAFSPNYI+LLI R L G GL
Sbjct: 68  VVFAGMLVGAYSWGVVSDRCGRRKGFLVTAIITFGAGFLSAFSPNYITLLISRCLVGLGL 127

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G G V  +WF+EFVP  NRG WMV+FS FWTFG++ EAALAWI+MP L WRWLLALSA+P
Sbjct: 128 GGGPVLLAWFLEFVPAPNRGAWMVIFSAFWTFGAIFEAALAWIIMPRLNWRWLLALSALP 187

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD------GTND 226
           +F LL+F    PESPRY C +G+  DA ++L+KIA+ N   LP G LT+D      G  +
Sbjct: 188 SFPLLLFYFMTPESPRYFCLEGQKIDALSVLNKIAKQNGKELPLGVLTTDNEIEAQGIKN 247

Query: 227 LDEEFSTSEETPLLSSARKRTTVRKSG-FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG 285
           L  E   +EE  + S+          G   S LML SP+  ++T+LLWV++FGN+F YYG
Sbjct: 248 LPTE--GTEEVAIPSATPLNWKDSDMGVLKSLLMLLSPKLIRSTVLLWVVFFGNAFSYYG 305

Query: 286 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLS 345
           +VLL +EL+   + C  +   S+   D   Y  V I SFAE PGL+ +AL+VDR+GRKLS
Sbjct: 306 LVLLTTELNNRSNTCHHTKAQSQGSSDVD-YKEVLIASFAEFPGLIVSALIVDRIGRKLS 364

Query: 346 MTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAG 405
           + ++F   CIFLLPLV  QS  + T LL GAR+   GTF I  I+APEIYPTS+RSTG G
Sbjct: 365 LAVLFFVSCIFLLPLVVHQSPSVTTVLLFGARICITGTFTIVFIYAPEIYPTSVRSTGIG 424

Query: 406 VAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTI 465
           VA ++GRIGGM+CPLVAV LV  CHQTAA++L   +I ++   ++L PFETKG EL ++I
Sbjct: 425 VASSMGRIGGMICPLVAVSLVQGCHQTAALILFVCIIFVAGCCVMLFPFETKGLELTDSI 484

Query: 466 DGVSNSKQVLVVA 478
               N K   V A
Sbjct: 485 SSTKNEKPKAVRA 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118676|ref|XP_002331420.1| predicted protein [Populus trichocarpa] gi|222873634|gb|EEF10765.1| predicted protein [Populus trichocarpa]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/492 (56%), Positives = 347/492 (70%), Gaps = 34/492 (6%)

Query: 7   RLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESL 66
            LVYT+DEAL  +GFGKFQGL L Y+GL WF+ AMEVMILSFVGPAVKS+W LSSS+ESL
Sbjct: 1   NLVYTVDEALASVGFGKFQGLVLVYAGLAWFAYAMEVMILSFVGPAVKSQWDLSSSQESL 60

Query: 67  ITTVVFAGMM--------------------------------SILGGALVTFVAGLLSAF 94
           ++T VF GM+                                  LG  L+T  AGLLSAF
Sbjct: 61  LSTAVFGGMLIGSFFWGLVSDHHGRRQTIISPLIPCINYMLKGFLGATLLTCGAGLLSAF 120

Query: 95  SPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAW 154
           SPNY SL+ILR L G+GLG G VF SWF+EFVP S+RGK M++ S FW FG++ EA LAW
Sbjct: 121 SPNYASLVILRCLVGSGLGGGSVFSSWFLEFVPASHRGKRMLLLSWFWAFGTIFEALLAW 180

Query: 155 IVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSL 214
           +VMP L+WRWLLA+S +PAF LL+F   +PESPRYLC KGRI DA+NIL+KIA  NQ+ L
Sbjct: 181 MVMPRLSWRWLLAVSCLPAFALLLFYSHVPESPRYLCMKGRINDAYNILEKIALLNQSKL 240

Query: 215 PSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWV 274
           P G L  D T  LDEE +TSE TPLLS+  K     +SGF SFLMLFS +  +TT+LLW 
Sbjct: 241 PPGELVPDSTIGLDEESATSEYTPLLSTTEKMDLDFRSGFQSFLMLFSSKLIRTTLLLWE 300

Query: 275 LYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAA 334
           L FGN F YY I+LL SELS  QS+C S++L SEN    S+YINVFI++ AELPG+L +A
Sbjct: 301 LLFGNVFSYYAIILLTSELSSWQSRCGSNLLKSENPD--SLYINVFISNLAELPGILLSA 358

Query: 335 LLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEI 394
            +VDR+GRKL++   F+   IFLLPLV  QS  L  + L GARM +   + +A I+  E+
Sbjct: 359 TIVDRIGRKLTVAFTFVLAGIFLLPLVYHQSATLTMSFLFGARMSTKAAYSVATIYVQEL 418

Query: 395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF 454
           YPTS+R+TGAG A A G++GGM+CPLVAVGLVTSC  T AI+L E L+ +S V ++ IP 
Sbjct: 419 YPTSVRATGAGAANAAGKVGGMICPLVAVGLVTSCQITEAIILFEVLMAISAVCVMFIPV 478

Query: 455 ETKGKELVNTID 466
           +TKG++L ++ID
Sbjct: 479 DTKGQKLCDSID 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523480|ref|XP_003530366.1| PREDICTED: synaptic vesicle 2-related protein-like [Glycine max]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/480 (54%), Positives = 328/480 (68%), Gaps = 25/480 (5%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITT 69
           YT+D+AL  +GFG FQ L LAY+G+GW SEAME+M+LSFVGPAV++ W LS+ EESLIT+
Sbjct: 80  YTVDDALVALGFGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHEESLITS 139

Query: 70  VVFAGMM-----------------SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL 112
           VVFAGM+                   L  A VT +AG LSAF+PNYI L++LR L G GL
Sbjct: 140 VVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTALAGFLSAFAPNYIFLIVLRSLVGIGL 199

Query: 113 GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP 172
           G G V  SWF+EFVP  NRG WMVVFS FWT G++ EA+LAWIVMP L WRWLLALS++P
Sbjct: 200 GGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAWIVMPKLGWRWLLALSSLP 259

Query: 173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS 232
              LL+F    PESPRYLC KGR  DA N+L+KIA+ N   LPSG L S+   +L +  +
Sbjct: 260 TSFLLLFYKVTPESPRYLCLKGRTADAINVLEKIARVNGRELPSGILVSEHEIELHKIDN 319

Query: 233 TSEETPLLSSARKRTTVRK------SGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI 286
            +E+  LLS         K         SS L+L SP+  ++T+LLW ++FGN+F YYG+
Sbjct: 320 PTEDARLLSPRTNEDEHPKGIVSNLGAISSLLVLLSPKLARSTLLLWAVFFGNAFSYYGL 379

Query: 287 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM 346
           VLL +EL+G  SKC S  L +E  QD   Y +VFI SFAELPGLL +A  VD++GRKLSM
Sbjct: 380 VLLTTELNG-HSKCMSDKLQTEKSQDVR-YKSVFIASFAELPGLLLSAAAVDKLGRKLSM 437

Query: 347 TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGV 406
           +IMF   CIFLLPL+      L T+ L  AR+    TF I  I+APE+YPTS+R+TG G+
Sbjct: 438 SIMFFMCCIFLLPLLFYLPEGLTTSFLFLARICITATFTIVYIYAPEMYPTSVRTTGVGI 497

Query: 407 AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID 466
           A +VGRIGGM+CPLVAVGLV  CHQTAA+LL E + ++S + ++  P ET G+EL N + 
Sbjct: 498 ASSVGRIGGMICPLVAVGLVHGCHQTAAVLLFEIVSLVSGICVMFFPIETMGQELRNNVQ 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.809	0.774	0.459	2.4e-106
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.416	0.359	0.323	5.5e-50
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.416	0.412	0.323	6.7e-50
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.416	0.363	0.323	2.3e-49
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.416	0.363	0.323	2.5e-49
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.416	0.363	0.319	3.3e-49
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.416	0.363	0.319	3.3e-49
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.416	0.363	0.319	4.2e-49
RGD|620277	548	Svop "SV2 related protein" [Ra	0.416	0.363	0.323	4.9e-49
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.416	0.363	0.323	4.9e-49

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 185/403 (45%), Positives = 240/403 (59%)

Query:    82 ALVTFVAGLLSAFSPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTF 141
             A+VTFVAG LSAFSPNY                  V  SW++EF+P  +RG WMVVFS F
Sbjct:    97 AVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAF 156

Query:   142 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 201
             WT G++ EA+LAW+VMP L WRWLLA S++P+ +LL+F  +  ESPRYL  +GR  +A  
Sbjct:   157 WTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALA 216

Query:   202 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST-SEETPLLSSARKRTTV----------R 250
             IL+KIA+ N+T LP G L+S+   +L+E  +  +E T LL +      V          +
Sbjct:   217 ILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADK 276

Query:   251 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENV 310
             + GFS  L L SP   K T+LLWV++FGN+F YYG+VLL                   N 
Sbjct:   277 EPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNS 335

Query:   311 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT 370
              D + Y +VFI SFAE PGLL +A +VDR+GRK SM  M    CIFLLPL++ QS  + T
Sbjct:   336 NDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITT 394

Query:   371 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 430
              LL G R+     F +  I+APEIYPT++R+TG GV  +VGRIGG++CPLVAVGLV  CH
Sbjct:   395 VLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCH 454

Query:   431 QTXXXXXXXXXXXXXXXXXXXXPFETKGKELVNTIDGVSNSKQ 473
             QT                    PFET G++L    D +S SK+
Sbjct:   455 QTIAVLLFEVVILVSGICVCLFPFETSGRDLT---DSISASKE 494

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                  E     S+    
Sbjct:   314 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEFFQAGDVCSISSRRKEVKAKCSLTCEY 373

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILL 369
                  Y ++  T+ +E PG+L    ++DR+GRK +M +  F+F    LL  + +  N+L 
Sbjct:   374 LTEEDYTDLLWTTLSEFPGVLVTLWIIDRIGRKKTMALSFFVFSFCSLLLFLCVGRNVL- 432

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   433 TVLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 492

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   493 VYLTLAVYSGCCLLAAVASFFL--PIETKGRGL 523

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 6.7e-50, Sum P(3) = 6.7e-50
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 361

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   362 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 421

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   422 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 452

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 2.3e-49, Sum P(3) = 2.3e-49
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 367

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 426

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVL- 426

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 3.3e-49, Sum P(3) = 3.3e-49
 Identities = 68/213 (31%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   307 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 366

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI-FVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F+ F    LL  + +  N +L
Sbjct:   367 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRN-ML 425

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   426 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 485

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   486 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 516

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 3.3e-49, Sum P(3) = 3.3e-49
 Identities = 68/213 (31%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI-FVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F+ F    LL  + +  N +L
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRN-ML 426

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 4.2e-49, Sum P(3) = 4.2e-49
 Identities = 68/213 (31%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI-FVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F+ F    LL  + +  N +L
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRN-ML 426

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.9e-49, Sum P(3) = 4.9e-49
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.9e-49, Sum P(3) = 4.9e-49
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 315
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   316 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 369
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 428
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   429 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 461
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.5060	0.9602	0.918	yes	no
P30638	YOU1_CAEEL	No assigned EC number	0.3251	0.8828	0.8115	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_164000007 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-67
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-32
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-25
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-23
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-18
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-11
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-10
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	6e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-09
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	8e-09
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-08
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-05
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	8e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.001
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.001
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.001
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	0.003
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.003

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  224 bits (574), Expect = 1e-67
 Identities = 132/488 (27%), Positives = 206/488 (42%), Gaps = 86/488 (17%)

Query: 10  YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFV--GPAVKSEWGLSSSEE--- 64
           + +D+       G          GL      ++    S+      + +EW L   +    
Sbjct: 71  FMVDQWANPSLLGCEPLKLSD-LGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKV 129

Query: 65  SLITTVVFAGMMSILGGA-------------------LVTFVAGLLSAFSPNYISLLILR 105
            L  +  F G++  LG                     LVT V+G+L+AFSPNY   L+ R
Sbjct: 130 DLTQSCFFVGVL--LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187

Query: 106 GLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRW 164
            L G G+G   V       EF+P   R     +   F++ G V    +A+ +     WRW
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRW 244

Query: 165 LLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT 224
           L    ++P F+  +   F+PESPR+L ++GRI +A  IL +IA+ N   LP+        
Sbjct: 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPA-------- 296

Query: 225 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVY 283
                E  +      LSS++K          SFL LF +P   KTT+ L +L+F  +F Y
Sbjct: 297 -----EVLSLSLEKDLSSSKK--------QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343

Query: 284 YGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK 343
           YG+VL    L G                  ++Y+++FI+   ELP  L   LL+DR+GR+
Sbjct: 344 YGLVLDLGNLGG------------------NIYLDLFISGLVELPAKLITLLLIDRLGRR 385

Query: 344 LSMTIMFIF--VCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS 401
            +M    +   V + LL  V +    L TAL    +      F +  ++  E+YPT +R+
Sbjct: 386 YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN 445

Query: 402 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF-----ET 456
            G GV   + R+G ++ P +               L   L++   + +L         ET
Sbjct: 446 LGVGVCSTMARVGSIISPFLV--------YLGEKWLFLPLVLFGGLALLAGILTLFLPET 497

Query: 457 KGKELVNT 464
           KG  L  T
Sbjct: 498 KGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  127 bits (321), Expect = 2e-32
 Identities = 102/423 (24%), Positives = 165/423 (39%), Gaps = 66/423 (15%)

Query: 24  FQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMM--SILGG 81
           +Q  A+  S L    +  ++  + F  PA+ +EWGL   +   + +    GM   ++  G
Sbjct: 14  YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73

Query: 82  AL--------------VTFVAG-LLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEF 125
            L              + F    LL A + N   LLILR LAG GLG       +   E+
Sbjct: 74  PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133

Query: 126 VPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI-PAFVLLIFIVFMP 184
            P   RG  + +    +  G+     LA  ++P+  WR L  +  I P  +LL+ + F+P
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLP 193

Query: 185 ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSAR 244
           ES  +L +K   T    I++ IA   Q    S                       L   +
Sbjct: 194 ESIDFLVSKRPET-VRRIVNAIAPQMQAEAQSA----------------------LPEQK 230

Query: 245 KRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV----LLASELSGSQSKC 300
                ++S    F  LF  +  + T+LLW+LYF      Y +      L  EL  S S  
Sbjct: 231 ATQGTKRS---VFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLA 287

Query: 301 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLP 359
           +                   + +F  + G +    L DR+G +++  + +   V   L+ 
Sbjct: 288 A---------------TGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVG 332

Query: 360 LVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCP 419
                  +LL      A  F  G            YPT++R+TG G A  +GR+G ++ P
Sbjct: 333 STLFSPTLLLLLGAI-AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGP 391

Query: 420 LVA 422
           ++A
Sbjct: 392 ILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  106 bits (267), Expect = 5e-25
 Identities = 87/408 (21%), Positives = 165/408 (40%), Gaps = 64/408 (15%)

Query: 76  MSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPSNRG 132
            S+L G ++  +  LL  F+   ++  L++ R + G G+G   V    ++ E  P   RG
Sbjct: 77  KSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRG 136

Query: 133 KWMVVFSTFWTFGSVSEAALAWIV---MPILTWRWLLALSAIPAFVLLIFIVFMPESPRY 189
               ++    TFG +  A +   +        WR  L L  +PA +LLI ++F+PESPR+
Sbjct: 137 ALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRW 196

Query: 190 LCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV 249
           L  KG++ +A  +L K+              SD   ++ EE  + E +            
Sbjct: 197 LVLKGKLEEARAVLAKL-----------RGVSDVDQEIQEEKDSLERS------------ 233

Query: 250 RKSGFSSFLMLFSPRFFKTTILLWVLYFG-------NSFVYYGIVLLASELSGSQSKCSS 302
            ++  +S+L LF  +  +  +L+ V+          N+  YY   +             +
Sbjct: 234 VEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFE-----------T 282

Query: 303 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-------LSMTIMFIFVCI 355
             L    +    V +  F+ +F        A  LVDR GR+         M I F+ + +
Sbjct: 283 LGLSDSLLVTIIVGVVNFVFTFI-------AIFLVDRFGRRPLLLLGAAGMAICFLVLGV 335

Query: 356 FLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI 413
            LL +   +    + +  +L     F++G   +  +   E++P  +R     +A A   +
Sbjct: 336 ALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWL 395

Query: 414 GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 461
              +   +   +  +      ++    L++  + V   +P ETKG+ L
Sbjct: 396 ANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRTL 442

Length = 449

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score =  104 bits (260), Expect = 1e-23
 Identities = 79/305 (25%), Positives = 129/305 (42%), Gaps = 38/305 (12%)

Query: 20  GFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMM--S 77
           G G+FQ       GL   ++ +EV ++ FV P+ + +  +  S + ++  +V+ GMM  +
Sbjct: 160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGA 219

Query: 78  ILGGAL---------------VTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSW 121
              G L               V       S+F   Y   L  R L+G G+G    + FS+
Sbjct: 220 FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSY 279

Query: 122 FMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-------------ILTWRWLLAL 168
           F EF+    RG+ +     FW  G +  AA+AW ++P               +WR  + +
Sbjct: 280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV 339

Query: 169 SAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSL--PSGNLTSDGTND 226
            A P    +  + FMPESPR+    G+  +A  IL  I   N  +   P    + +    
Sbjct: 340 CAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399

Query: 227 LDEEFSTSEETPLLSSARKRTTVRKSG-----FSSFLMLFSPRFFKTTILLWVLYFGNSF 281
           + +E    E      +  +R  VR        + +FL  F+P   + TI L  ++F  SF
Sbjct: 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF 459

Query: 282 VYYGI 286
            YYG+
Sbjct: 460 GYYGL 464

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 95/415 (22%), Positives = 160/415 (38%), Gaps = 69/415 (16%)

Query: 77  SILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPSNRG 132
           S+L  AL+  +  +L    AF+ +   L++ R L G G+G        ++ E  P + RG
Sbjct: 103 SLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRG 162

Query: 133 KWMVVFSTFWTFGSVSEAALAWIVMPI-------LTWRWLLALSAIPAFVLLIFIVFMPE 185
               ++    TFG +    +A+            L WR  L L  IPA +L + + F+PE
Sbjct: 163 ALTSLYQLAITFGIL----VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPE 218

Query: 186 SPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARK 245
           SPR+L  KGR+ +A   L ++                      E+    +E  L+   R 
Sbjct: 219 SPRWLVGKGRVEEARKSLARL-----------------RGTSGEDKELLDELELIDIKRS 261

Query: 246 RTTVRKSGFSSFLMLFS------PRFFKTTILLWVLYF--GNSFVYYGIVLLASELSGSQ 297
                +S   S+  LFS       R F   +L W   F   N+ +YY   +   E +G  
Sbjct: 262 IEK--RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF--ENAGVS 317

Query: 298 SKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-----------LSM 346
           +  +        +    V    F  +F        A  LVDR GR+           + +
Sbjct: 318 TDHAF-------LVSIIVGAVNFAFTF-------VAIFLVDRFGRRPLLLIGAAGMAICL 363

Query: 347 TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGV 406
            ++ I    F+        N+ +  +L     F+MG   +  +   EI+P S+R  G  +
Sbjct: 364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISI 423

Query: 407 AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 461
           A A   +   +   +   ++ S       +    L VL ++ +     ETKG+ L
Sbjct: 424 AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 16/212 (7%)

Query: 243 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS 302
                  +++       LF       T+LLW+ YF    V Y    L + L         
Sbjct: 198 QAAGAGKQRAPVLR--ALFGEGRATATLLLWISYFFTLIVLY---FLLNWLP-------- 244

Query: 303 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT 362
           S+L+ + +  +   +     +     G L    L+DR+  +  + +++  +   L  L  
Sbjct: 245 SLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA 304

Query: 363 LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 422
             S   +      A +F +G   +    AP  YPT +R TG G A AVGR+G M  PL+A
Sbjct: 305 APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Query: 423 VGLVTSCHQTAAILLLEA--LIVLSVVVILLI 452
            G + +  ++   ++  +  +I+++ +  LL+
Sbjct: 365 -GQLLALGRSTVGVIGASIPVILVAALAALLL 395

Length = 406

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 31/383 (8%)

Query: 82  ALVTFVAG-LLSAFSPNYISLLILR-----GLAGA-GLGSGHVFFSWFMEFVPPSNRGKW 134
           ++V F  G L   F+P Y +L I R     G+AG  G  + +V  SW     P   R K 
Sbjct: 91  SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW-----PKHLRNKA 145

Query: 135 MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 194
                + ++ G+V  A +  +V+P+  WR L  +  +P    L     +PE+  +     
Sbjct: 146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHA 205

Query: 195 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 254
                  ++D + +  +  + +  LT      L   F+ + +   + +      +  + F
Sbjct: 206 GKAPVRTMVDILYR-GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL--GLLCAAIF 262

Query: 255 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 314
            SF++  S + + T ++L V           +VL A   S        + L ++   D  
Sbjct: 263 ISFMVQSSGKRWPTGVMLMV-----------VVLFAFLYSWPIQALLPTYLKTDLGYDPH 311

Query: 315 VYINV-FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI--LLTA 371
              NV F + F    G      L D +G + +     +   + ++P+  +      +L  
Sbjct: 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL 371

Query: 372 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ 431
           LL   +M   G   +        + T  R+ G G  Y VG +GG + P++   +      
Sbjct: 372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431

Query: 432 TAAILLLEALIVLSVVVILLIPF 454
             A+  L     L+ VVILLI  
Sbjct: 432 GTALASLS--FSLTFVVILLIGL 452

Length = 496

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 119/529 (22%), Positives = 194/529 (36%), Gaps = 113/529 (21%)

Query: 12  LDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVG---------------PAVKSE 56
           L+EA T   FG     A+  +G+G+F+++ ++  +S V                 +V + 
Sbjct: 2   LEEADT-APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAA 60

Query: 57  WGLSSSEESLITTVVFAGMMSILGGALV-------TFVAGLLSAFSPNYIS------LLI 103
              S+S  +L   + F  +   LG   V         +A + S  SP          L  
Sbjct: 61  VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCF 120

Query: 104 LRGLAGAGLGSGHVFFSWFM-EFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-- 160
            R   G G+G  +   +    EF     RG  M        FG ++ A +A IV+     
Sbjct: 121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKH 180

Query: 161 ---------------------TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDA 199
                                 WR L+   A+PA + L F + +PE+PRY       T  
Sbjct: 181 SLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY-------TAD 233

Query: 200 HNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLM 259
                + A  + +++    +  +   D  E+ ST+ E P  S          S F  F  
Sbjct: 234 VAKDVEQAASDMSAVLQVKI--EAEPDEVEKASTAVEVPKASW---------SDF--FTH 280

Query: 260 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINV 319
            F  R  K  +     +F     +YG+ L       +Q    S+I  S      + Y  +
Sbjct: 281 FFKWRHGKHLLGTAGSWFLLDIAFYGVNL-------NQKVILSAIGYSPPAATNNAYEEL 333

Query: 320 FITSFAEL--------PGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTA 371
           + T+   L        PG      LVD +GRK    + F  + +    L    +++    
Sbjct: 334 YKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHG 393

Query: 372 LLSGARMFSMGTFIIANIFAP---------EIYPTSMRSTGAGVAYAVGRIGGMV----- 417
            L+   ++ +     AN F P         E++PT  RST  G++ A G+ G ++     
Sbjct: 394 FLA---IYVL-AQFFAN-FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF 448

Query: 418 CPLVAVGLVTSCHQTAA-----ILLLEALIVLSVVVILLIPFETKGKEL 461
             L   G  T  + T       + +    + L ++  LLIP ETKGK L
Sbjct: 449 LYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSL 496

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 11/203 (5%)

Query: 252 SGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ 311
           +     L L      +  +LL + +F  SF YYG++             S+         
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--------- 210

Query: 312 DASVYINVFITSFAELPGLLTAALLVDRVGRKLS-MTIMFIFVCIFLLPLVTLQSNILLT 370
            A   + + +     + G L   LL DR+GR+   + I  +   + LL L    S  LL 
Sbjct: 211 -AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 371 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 430
             L          F      A E+ P   R T +G+    G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 431 QTAAILLLEALIVLSVVVILLIP 453
                L+L AL +L+ +++LL+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 18/170 (10%)

Query: 33  GLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMM---------------- 76
            LG+F   ++  +LS   P +  + GLS+S+  LI +    G                  
Sbjct: 5   FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR 64

Query: 77  -SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKW 134
             +L G L+  +  LL AF+ +   LL+ R L G G G+ +    +   E+ PP  RG+ 
Sbjct: 65  RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA 124

Query: 135 MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMP 184
           + +FS  +  G++    L  ++   L WRWL  + AI   +L + ++F+ 
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 20/179 (11%)

Query: 28  ALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFA---------GMMSI 78
           A + + LGW  +A +  +++ V   V  E+GL++ + + + +             G+   
Sbjct: 13  AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD 72

Query: 79  LGG---ALVT-----FVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWF-MEFVPPS 129
             G    +VT         L   F+P YI++ I R + G G+G  +   + + +E  P  
Sbjct: 73  RYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132

Query: 130 NRGKWMVVFSTFWTFGSVSEAALAWIVMPI--LTWRWLLALSAIPAFVLLIFIVFMPES 186
            R K   +  + +  G+V  A +  +V+P+    WR L  +S +P    L     +PE+
Sbjct: 133 LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 39/139 (28%)

Query: 78  ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGK---- 133
           I+GG  V    GL S  SP YI+                       E  P   RGK    
Sbjct: 128 IIGGIGV----GLASMLSPMYIA-----------------------EIAPAHIRGKLVSF 160

Query: 134 --WMVVFST----FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESP 187
             + ++F      F  +        +W+      WR++ A  AIPA + L+ + F+PE+P
Sbjct: 161 NQFAIIFGQLVVYFVNYFIARSGDASWLNT--DGWRYMFASEAIPALLFLMLLYFVPETP 218

Query: 188 RYLCTKGRITDAHNILDKI 206
           RYL ++G+   A  IL KI
Sbjct: 219 RYLMSRGKQEQAEGILRKI 237

Length = 479

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 334 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILL-TALLSGARMFSMGTFIIANI 389
             L DR+GR+  + I  +   +  +PL+       +  L   L+ G  +           
Sbjct: 276 GALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGS 335

Query: 390 FAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCHQTAAI---LLLEALIVL 444
           F PE++PT +R TGA +AY +   I G   P +A  LV       AI   L   ALI L
Sbjct: 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 315 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 374
           +Y   F+ + A LPG + +ALL+D++GR   +    +  CI    L    S   + ALL 
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLC 656

Query: 375 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 434
                S+  +   ++   E+YP+  R+T  G   A+ +   ++  L+    V    + A 
Sbjct: 657 LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV-GITKAAP 715

Query: 435 ILLLEALIVLSVVVILLIPFETKGKEL 461
           IL   A +    ++ L +P +T+G+ L
Sbjct: 716 ILFASAALACGGLLALKLP-DTRGQVL 741

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 60/405 (14%), Positives = 119/405 (29%), Gaps = 85/405 (20%)

Query: 34  LGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMM----------------- 76
             + +     ++   +   +  + G+S +E  L+ T    G                   
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 77  SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWM 135
            +L G L+  +  LL  F+ +   LL+LR L G G G+      +   ++ PP  RG+ +
Sbjct: 64  VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123

Query: 136 VVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGR 195
            + S  +  G+     L  ++  +  WR    + AI A +  +    +            
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL------------ 171

Query: 196 ITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFS 255
                                                     P     +           
Sbjct: 172 -------------------------------------LPRPPPESKRPKPAEEAPAPLVP 194

Query: 256 SFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASV 315
           ++ +L         + L +  F    +   + L    L                +     
Sbjct: 195 AWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL---------------GLSALLA 239

Query: 316 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF---IFVCIFLLPLVTLQSNILLTAL 372
            + + +       G L    L DR+GR+  + +     I   + L  L   +S++ L   
Sbjct: 240 GLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299

Query: 373 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV 417
           L      +   F   N    ++ P   R T +G+    G +GG +
Sbjct: 300 LLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 21/230 (9%)

Query: 235 EETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLY--FGNSFVYYGIVLLAS 291
           EE  L    +   +       S   LF+  +F  T  +  VL+  FG ++  +G  LL +
Sbjct: 199 EEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG--LLPT 256

Query: 292 ELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI 351
            L+G            E      V   +   +F  + G +   L  DR+G K + +I  +
Sbjct: 257 YLAG------------EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLL 304

Query: 352 FVCIFLLPL--VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA 409
              +F+ PL  +   + +LL A L G    ++G   +   F  + +P  +R  G G+ Y 
Sbjct: 305 MSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYN 364

Query: 410 VGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 459
           +    G    + A  L  +    AA+  + A    +  ++L+I      +
Sbjct: 365 LAATSGTFNSMAATWLGITMGLGAALTFIVAF--WTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 79/407 (19%), Positives = 137/407 (33%), Gaps = 86/407 (21%)

Query: 46  LSFVGPAVKSEWGLSSSEESLITTVVFA---------GMMSILGGALVTFVAGLLS---- 92
            +   P +  E GLS ++  L+ +             G +S      V    GL+     
Sbjct: 14  FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV 73

Query: 93  ----AFSPNYISLLILRGLAG--AGLG---SGHVFFSWFMEFVPPSNRGKWMVVFSTFWT 143
                FS +   +  L  L G   G+G    G     WF      S RG W+  ++    
Sbjct: 74  NLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SRSERGTWVSFWNCSHN 129

Query: 144 FGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHN 201
            G      L    +  L +W W+  +  I A ++ LI  + + +SP+             
Sbjct: 130 VGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ------------- 176

Query: 202 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF 261
                              S G    +E    +EE    +  ++    +K  F  +++L 
Sbjct: 177 -------------------SCGLPPAEEMP--NEEPDGDAEKKEEELTKKQIFLQYVLL- 214

Query: 262 SPRFFKTTILLWVLYFGNSFVYY--GIVLLASELSGSQSKCSSSILLSENVQDASVYINV 319
                    +LW +  G  FVY     +L  S L  +Q K  S          AS    +
Sbjct: 215 -------NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE-------KASWAFTL 260

Query: 320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMF 379
           +      L G L A  L D++       +   F+ + ++ L+    N     L+    +F
Sbjct: 261 Y--ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLF 318

Query: 380 SMGTFI-----IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV 421
           ++G  +     +  + A E+ P     T AG       +GG++  L 
Sbjct: 319 ALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 26/159 (16%)

Query: 46  LSFVGPAVKSEWGLSSSEESLITTVVFAGM--MSILGG------------ALVTFVAGLL 91
           LSF  P ++ + GLS+++   + +    G       GG            A+   + G+ 
Sbjct: 13  LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72

Query: 92  S---AFSPNYISLLILRGLAGAGL-----GSGHVFFSWFMEFVPPSNRGKWMVVFSTFWT 143
           +   AF+  Y+SL ILR L GA       G   +  SWF    P S R   + +F++   
Sbjct: 73  TGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF----PASERATAVSIFNSAQG 128

Query: 144 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVF 182
            G +    L   ++   +W+W   +  +   +  +  + 
Sbjct: 129 LGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLK 167

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI-LLTALLSGAR 377
           V  ++   + G      L D +GR+ +     +   + ++P+  + +N+ +L   L   +
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339

Query: 378 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV 421
           M   G + I      E +PT  R+ G G  Y +G +GG + P++
Sbjct: 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 33/142 (23%), Positives = 53/142 (37%)

Query: 319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 378
           +   S         A  L DR GR+  + I  +   + LL L+   S  LL  L     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 379 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 438
                F  A     + +P   R    G+  A   +G  + PL+   L +     AA L+L
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 439 EALIVLSVVVILLIPFETKGKE 460
             L +L+ V+  L+      + 
Sbjct: 158 AILALLAAVLAALLLPRPPPES 179

Length = 346

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 78  ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFS----WFMEFVPPSNRGK 133
           +LG   +  V+ LLSA +P++  LL+ R LAG   G   VF+S         VPP  RG+
Sbjct: 81  LLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG---VFWSIAAALAARLVPPGKRGR 137

Query: 134 WMVVFSTFWTFGSVSEAALAWIVMPILTWRWL-LALSAIPAFVLLIFIVFMPES 186
            + +  T  T  +V    L   +  +  WR   LA++ +    LL+    +P S
Sbjct: 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPS 191

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 8/182 (4%)

Query: 272 LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLL 331
           L +L+ G         LL+             +     +  +   + V   S     G L
Sbjct: 1   LLLLFLGFFLSGLDRGLLSP--------ALPLLAEDLGLSASQAGLIVSAFSLGYALGSL 52

Query: 332 TAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFA 391
            A  L DR GR+  + +  +   +  L L    S  LL        +     +  A    
Sbjct: 53  LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALI 112

Query: 392 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL 451
            E +P   R    G+  A   +G ++ PL+   L  S       L+L  L +L  +++L 
Sbjct: 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172

Query: 452 IP 453
           + 
Sbjct: 173 LL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 21/152 (13%)

Query: 329 GLLTAALLV------------DRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 376
           G++TAAL V            D++GR+ SM        +F +P+++   N+       G 
Sbjct: 283 GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGL 342

Query: 377 RMFSMGTFI------IANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSC 429
            M ++   I      I+ I   E++P  +R+ G G++YAV   + G     VA+ L +  
Sbjct: 343 VMCAL--LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIG 400

Query: 430 HQTAAILLLEALIVLSVVVILLIPFETKGKEL 461
            +TA    +  + V++ +V L++  + KG  L
Sbjct: 401 METAFFWYVTLMAVVAFLVSLMLHRKGKGMRL 432

Length = 432

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 78  ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLG-SGHVFFSWFMEFVPPSNRGKWMV 136
           +L G  +  ++  + A S N   L+I R L G G   +     +   +  PP  RG  + 
Sbjct: 31  LLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALG 90

Query: 137 VFSTFWTFGSVSEAALAWIVMPILTWRWL---LALSAIPAFVLLIFIVFMPES 186
           + S     G +    L  ++   L WR     LA+ A+ AF+LL F   +PE+
Sbjct: 91  LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF--LLPET 141

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.98
PRK12307	426	putative sialic acid transporter; Provisional	99.98
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK03699	394	putative transporter; Provisional	99.94
PLN00028	476	nitrate transmembrane transporter; Provisional	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
PRK09705	393	cynX putative cyanate transporter; Provisional	99.94
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.92
PRK05122	399	major facilitator superfamily transporter; Provisi	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.92
PRK10504	471	putative transporter; Provisional	99.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.91
PRK12382	392	putative transporter; Provisional	99.9
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.89
KOG2533	495	consensus Permease of the major facilitator superf	99.89
TIGR00900	365	2A0121 H+ Antiporter protein.	99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.88
PRK09874	408	drug efflux system protein MdtG; Provisional	99.88
PRK11010	491	ampG muropeptide transporter; Validated	99.88
PRK15011	393	sugar efflux transporter B; Provisional	99.88
PRK11043	401	putative transporter; Provisional	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.86
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.86
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.85
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.85
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.84
TIGR00901	356	2A0125 AmpG-related permease.	99.83
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.81
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.81
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.8
PRK11902	402	ampG muropeptide transporter; Reviewed	99.8
PRK10054	395	putative transporter; Provisional	99.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.79
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.77
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.76
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.76
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.74
PRK09528	420	lacY galactoside permease; Reviewed	99.74
PTZ00207	591	hypothetical protein; Provisional	99.72
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.72
TIGR00805	633	oat sodium-independent organic anion transporter.	99.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.69
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.68
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.63
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.62
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.62
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.6
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.58
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.55
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.53
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.5
PRK10642	490	proline/glycine betaine transporter; Provisional	99.48
KOG2615	451	consensus Permease of the major facilitator superf	99.47
PRK09669	444	putative symporter YagG; Provisional	99.45
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.42
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.38
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.31
PF13347	428	MFS_2: MFS/sugar transport protein	99.29
PRK11462	460	putative transporter; Provisional	99.28
PLN00028	476	nitrate transmembrane transporter; Provisional	99.22
PRK10429	473	melibiose:sodium symporter; Provisional	99.21
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.17
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.16
PRK09848	448	glucuronide transporter; Provisional	99.15
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.12
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.11
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.11
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.1
PRK10054	395	putative transporter; Provisional	99.09
TIGR00895	398	2A0115 benzoate transport.	99.09
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.08
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.08
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.07
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.06
PRK10504	471	putative transporter; Provisional	99.06
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.06
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.06
TIGR00893	399	2A0114 d-galactonate transporter.	99.04
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.04
PRK03893	496	putative sialic acid transporter; Provisional	99.03
TIGR00891	405	2A0112 putative sialic acid transporter.	99.03
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.02
PRK03545	390	putative arabinose transporter; Provisional	99.0
PRK12307	426	putative sialic acid transporter; Provisional	99.0
KOG2563	480	consensus Permease of the major facilitator superf	99.0
PRK11663	434	regulatory protein UhpC; Provisional	99.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.99
COG2211	467	MelB Na+/melibiose symporter and related transport	98.98
TIGR00900	365	2A0121 H+ Antiporter protein.	98.98
PRK03699	394	putative transporter; Provisional	98.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.89
PRK10091	382	MFS transport protein AraJ; Provisional	98.89
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.89
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.85
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.83
PRK09874	408	drug efflux system protein MdtG; Provisional	98.82
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.82
PRK09528	420	lacY galactoside permease; Reviewed	98.8
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.78
PRK11043	401	putative transporter; Provisional	98.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.78
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.78
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.77
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.74
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.73
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.72
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.72
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.7
PRK10489	417	enterobactin exporter EntS; Provisional	98.7
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.7
PRK15011	393	sugar efflux transporter B; Provisional	98.7
PRK03633	381	putative MFS family transporter protein; Provision	98.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.69
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.69
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.69
TIGR00898	505	2A0119 cation transport protein.	98.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.67
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.67
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.67
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.63
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.63
PRK15075	434	citrate-proton symporter; Provisional	98.62
PRK05122	399	major facilitator superfamily transporter; Provisi	98.61
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.6
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.59
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.57
PRK09952	438	shikimate transporter; Provisional	98.56
KOG2615	451	consensus Permease of the major facilitator superf	98.55
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.55
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.53
PRK09705	393	cynX putative cyanate transporter; Provisional	98.52
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.5
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.49
PRK12382	392	putative transporter; Provisional	98.49
PRK11010	491	ampG muropeptide transporter; Validated	98.47
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.44
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.4
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.4
PRK10133	438	L-fucose transporter; Provisional	98.4
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.39
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.37
TIGR00901	356	2A0125 AmpG-related permease.	98.36
KOG0569	485	consensus Permease of the major facilitator superf	98.32
PTZ00207	591	hypothetical protein; Provisional	98.3
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.28
KOG0254	513	consensus Predicted transporter (major facilitator	98.27
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.26
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.23
PRK11902	402	ampG muropeptide transporter; Reviewed	98.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.19
KOG3626	735	consensus Organic anion transporter [Secondary met	98.16
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.16
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.11
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.99
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.94
TIGR00805	633	oat sodium-independent organic anion transporter.	97.93
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.93
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.91
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.9
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.86
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.81
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.8
KOG2532	466	consensus Permease of the major facilitator superf	97.8
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.79
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.75
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.74
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.66
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.51
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.45
KOG2533	495	consensus Permease of the major facilitator superf	97.29
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.26
PRK09669	444	putative symporter YagG; Provisional	97.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.18
COG0477	338	ProP Permeases of the major facilitator superfamil	97.14
PF13347	428	MFS_2: MFS/sugar transport protein	97.11
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.0
PRK10429	473	melibiose:sodium symporter; Provisional	96.99
KOG3810	433	consensus Micronutrient transporters (folate trans	96.96
KOG3762	618	consensus Predicted transporter [General function	96.96
PRK09848	448	glucuronide transporter; Provisional	96.89
PRK11462	460	putative transporter; Provisional	96.85
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.8
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.79
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.71
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.66
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.4
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.26
COG2211	467	MelB Na+/melibiose symporter and related transport	96.23
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.22
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.16
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.7
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.67
KOG3762	618	consensus Predicted transporter [General function	95.2
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	94.83
KOG2563	480	consensus Permease of the major facilitator superf	94.77
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.6
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	94.57
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.4
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.32
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.26
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.13
COG0477	338	ProP Permeases of the major facilitator superfamil	93.78
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.36
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	90.63
PF12832	77	MFS_1_like: MFS_1 like family	89.99
KOG2325	488	consensus Predicted transporter/transmembrane prot	89.37
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	88.37
COG3202	509	ATP/ADP translocase [Energy production and convers	85.71
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	85.55
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	83.04
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	82.19
PRK03612	521	spermidine synthase; Provisional	81.81

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=7.3e-56  Score=406.10  Aligned_cols=444  Identities=39%  Similarity=0.652  Sum_probs=370.5

Q ss_pred             cccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH---------
Q 011756            7 RLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS---------   77 (478)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~---------   77 (478)
                      .|...+||+++++|+|++|+...+++++||+.|.++.+..+++.|..+..|+++..|.+++.+..+.|+.+         
T Consensus        58 ~k~~tv~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~  137 (528)
T KOG0253|consen   58 AKSFTVDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSA  137 (528)
T ss_pred             cceeeehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheeh
Confidence            35667899999999999999999999999999999999999999999999999999999998888888766         


Q ss_pred             --------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHH
Q 011756           78 --------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE  149 (478)
Q Consensus        78 --------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~  149 (478)
                              +..+.+...+.+.+.+++||+..+.+.|.+.|+|+|+.++..++..|..|..+|+..+-+. ..|.+|.+..
T Consensus       138 d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~e  216 (528)
T KOG0253|consen  138 DTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFE  216 (528)
T ss_pred             hhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHH
Confidence                    4555666677778899999999999999999999999878888899999999999998888 8999999999


Q ss_pred             HHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccc
Q 011756          150 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  229 (478)
Q Consensus       150 ~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (478)
                      ..+++.+++..||||..+..+.|..+...+..++||||||.+.||++++|.+.+++++++|++..|...+....++++++
T Consensus       217 a~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~  296 (528)
T KOG0253|consen  217 ALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQ  296 (528)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhh
Confidence            99999999999999999998999999999999999999999999999999999999999999887765443332222222


Q ss_pred             ccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccccc-----
Q 011756          230 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI-----  304 (478)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----  304 (478)
                      +      +...++  .+.+..+++..+...+++|+++|+++++|..|++|.+.|||..++...+......|....     
T Consensus       297 e------~~~~~~--~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~  368 (528)
T KOG0253|consen  297 E------ESDLDD--SKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPT  368 (528)
T ss_pred             h------hhchhh--hhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchh
Confidence            1      111111  111122334456788999999999999999999999999999998887764433332211     


Q ss_pred             -ccc---cCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHh
Q 011756          305 -LLS---ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS  380 (478)
Q Consensus       305 -~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (478)
                       ...   -......-|.+.++..+..+||.++.++++||+|||+.|..+.++++++.+....-.+.....++.+.+.+|.
T Consensus       369 e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi  448 (528)
T KOG0253|consen  369 ELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI  448 (528)
T ss_pred             HHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence             110   0122234477888999999999999999999999999999999988888776655444455677888888999


Q ss_pred             hhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcc
Q 011756          381 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  460 (478)
Q Consensus       381 ~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~  460 (478)
                      .+.+...|+|.+|+||+.+|++|.|.+..++|+|++++|+++  +....+.+.+..+++++++++++.+.++|.|||||+
T Consensus       449 sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  449 SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            999999999999999999999999999999999999999987  344445567888999999999999999999999997


Q ss_pred             c
Q 011756          461 L  461 (478)
Q Consensus       461 l  461 (478)
                      +
T Consensus       527 l  527 (528)
T KOG0253|consen  527 L  527 (528)
T ss_pred             C
Confidence            5

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=7e-47  Score=395.72  Aligned_cols=451  Identities=26%  Similarity=0.414  Sum_probs=331.8

Q ss_pred             ccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH----------
Q 011756            8 LVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS----------   77 (478)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~----------   77 (478)
                      .+...|+++|+++.+++||.+++.++++++.+++|...+++..|.+++++++++.+.+++.+++++|.++          
T Consensus       148 ~~~~~d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsD  227 (742)
T TIGR01299       148 LAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLAD  227 (742)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999998887666          


Q ss_pred             -------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHH
Q 011756           78 -------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE  149 (478)
Q Consensus        78 -------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~  149 (478)
                             ++.+.+++.+++++++++++++.++++|++.|+|.|+. ++..+++.|++|+++||+..++.+.++.+|.+++
T Consensus       228 R~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila  307 (742)
T TIGR01299       228 KLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYA  307 (742)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                   45566777788888899999999999999999999876 4667889999999999999999999999999999


Q ss_pred             HHHHHHHhcC-------------cchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCC
Q 011756          150 AALAWIVMPI-------------LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  216 (478)
Q Consensus       150 ~~~~~~~~~~-------------~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  216 (478)
                      +.++..+.+.             .+||+++++.++|.++.++.++++||||||+..|||.+||.++++++++.|++....
T Consensus       308 ~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~  387 (742)
T TIGR01299       308 AAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGH  387 (742)
T ss_pred             HHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCc
Confidence            9887665442             369999999999999888888999999999999999999999999998776542110


Q ss_pred             C--CCC------CCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 011756          217 G--NLT------SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVL  288 (478)
Q Consensus       217 ~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (478)
                      .  ...      .+.+++..+..+. ...................+.+++.+|+++++++++++|++|++..+.||++..
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~  466 (742)
T TIGR01299       388 PEKVFSVNHIKTIHQEDELIEIESD-TGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSV  466 (742)
T ss_pred             hhHHHHHHHHHHhhhhhhhhccccc-ccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  000      0000000000000 000000000000000011123467789999999999999999999999999999


Q ss_pred             HHHhhhCCC------------CC---------------------c-----ccccc---c---------------c-----
Q 011756          289 LASELSGSQ------------SK---------------------C-----SSSIL---L---------------S-----  307 (478)
Q Consensus       289 ~~~~l~~~~------------~~---------------------~-----~~~~~---~---------------~-----  307 (478)
                      |.|.+....            +.                     .     .+...   .               .     
T Consensus       467 w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (742)
T TIGR01299       467 WFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFF  546 (742)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhh
Confidence            999763210            00                     0     00000   0               0     


Q ss_pred             ----------cC---------------------------------ccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 011756          308 ----------EN---------------------------------VQDASVYINVFITSFAELPGLLTAALLVDRVGRKL  344 (478)
Q Consensus       308 ----------~~---------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~  344 (478)
                                .+                                 ......+...++..++.++|.+++++++||+|||+
T Consensus       547 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~  626 (742)
T TIGR01299       547 KNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR  626 (742)
T ss_pred             hccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence                      00                                 00012344456677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHH
Q 011756          345 SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  424 (478)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~  424 (478)
                      ++..+.++.+++.+.+....+.....++.++..++..+.++..+.+.+|++|++.|++++|+++.++++|++++|.+.+.
T Consensus       627 ~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~  706 (742)
T TIGR01299       627 MLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGS  706 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888777776655544433222222222333344445667788999999999999999999999999999999999877


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHHhccccccCccc
Q 011756          425 LVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  461 (478)
Q Consensus       425 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l  461 (478)
                      +... +...++++++++.++++++.+++ |||+|+.|
T Consensus       707 L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l  741 (742)
T TIGR01299       707 FVGI-TKAAPILFASAALACGGLLALKL-PDTRGQVL  741 (742)
T ss_pred             HHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence            7654 33456777777777776666654 89999875

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=6.4e-44  Score=367.19  Aligned_cols=427  Identities=22%  Similarity=0.303  Sum_probs=292.8

Q ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhc-----CCCcchhhHHHHHHHHHHHH-----------
Q 011756           14 EALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEW-----GLSSSEESLITTVVFAGMMS-----------   77 (478)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~s~~~~G~~~-----------   77 (478)
                      |++|+.+++++|++++.+++++.+.|++|...++.+.|.+.+++     +.++.+.+++.+...+|.++           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~   82 (502)
T TIGR00887         3 EEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK   82 (502)
T ss_pred             chhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57799999999999999999999999999999999999987753     34556778888888776555           


Q ss_pred             ------HHHHHHHHHHHHHHHhhhch------HHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHH
Q 011756           78 ------ILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF  144 (478)
Q Consensus        78 ------~~~~~~~~~i~~~~~~~a~~------~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  144 (478)
                            +..+.+++.+++++++++++      +..++++|++.|++.|.. +....|+.|++|+|+||+.+++.+..+.+
T Consensus        83 ~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~  162 (502)
T TIGR00887        83 LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGF  162 (502)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence                  45566677777787787766      789999999999999986 45678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-----------------------CcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChh-HHH
Q 011756          145 GSVSEAALAWIVMP-----------------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT-DAH  200 (478)
Q Consensus       145 G~~~~~~~~~~~~~-----------------------~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~-~a~  200 (478)
                      |.++++.++..+.+                       .++||++|.++++|+++.++.++++||||||+..|+|+| +++
T Consensus       163 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~  242 (502)
T TIGR00887       163 GILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAA  242 (502)
T ss_pred             HHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHH
Confidence            99998888765421                       247999999999999988888899999999999999875 577


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccC----cchHHHHHHHHHHH
Q 011756          201 NILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS----PRFFKTTILLWVLY  276 (478)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~  276 (478)
                      +.+++.++.+..+         +.++.++..+  ++         +.  .+   .+++++++    +++++.++..+..+
T Consensus       243 ~~~~~~~~~~~~~---------~~~~~~~~~~--~~---------~~--~~---~~~~~l~~~~~~~~~~~~~~~~~~~~  297 (502)
T TIGR00887       243 SDMSAVLQVKIEA---------EPDEVEKAST--AV---------EV--PK---ASWSDFFTHFFKWRHGKHLLGTAGSW  297 (502)
T ss_pred             HHHHHHhcccccc---------Ccccccchhc--cc---------cc--hh---hhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            7777665321100         0001000000  00         00  00   12333332    23334444445556


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCCcccc-cccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 011756          277 FGNSFVYYGIVLLASELSGSQSKCSSS-ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCI  355 (478)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~  355 (478)
                      +...+.+|+...+.|.+....+..... ........-.....+..+..++.++|.++.++++||+|||+.++.+..+.++
T Consensus       298 ~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~  377 (502)
T TIGR00887       298 FLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTV  377 (502)
T ss_pred             HHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Confidence            666778888777776654322110000 0000000000111123444566788999999999999999988776655544


Q ss_pred             HHHHHHhhc---hhHHHHHHH-HHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc--
Q 011756          356 FLLPLVTLQ---SNILLTALL-SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--  429 (478)
Q Consensus       356 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~--  429 (478)
                      +...+....   .......+. ....++..+..+..+.+.+|++|++.|+++.|+++.+++++++++|++.+.+.+..  
T Consensus       378 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~  457 (502)
T TIGR00887       378 LFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP  457 (502)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccc
Confidence            333322211   111111111 11222234556677899999999999999999999999999999999998887632  


Q ss_pred             --------chhHHHHHHHHHHHHHHHHHHhccccccCcccchhhc
Q 011756          430 --------HQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID  466 (478)
Q Consensus       430 --------~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~~~~~  466 (478)
                              +....+.+++++++++.+.. ++.||||||++||...
T Consensus       458 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       458 TKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence                    12346777888877776654 5679999999987543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.4e-39  Score=316.84  Aligned_cols=413  Identities=22%  Similarity=0.330  Sum_probs=284.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HhhhhhcC--CCcchhhHHH----HHHHHHHHH---------
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVG--------PAVKSEWG--LSSSEESLIT----TVVFAGMMS---------   77 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--l~~~~~~~~~----s~~~~G~~~---------   77 (478)
                      .++....+.+.+.+|-+-.+|....++...        .+..+.++  +++++..++.    |.+++|.++         
T Consensus         5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la   84 (485)
T KOG0569|consen    5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA   84 (485)
T ss_pred             ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556666666677665555433        33344555  5555555544    445555444         


Q ss_pred             --------HHHHHHHHHHHHH---HHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 011756           78 --------ILGGALVTFVAGL---LSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFG  145 (478)
Q Consensus        78 --------~~~~~~~~~i~~~---~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  145 (478)
                              +..+.++..++++   .+-..+++++++++|++.|+..|... ....|+.|.+|++.||....+.+.+..+|
T Consensus        85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g  164 (485)
T KOG0569|consen   85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG  164 (485)
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence                    3334444444443   34456889999999999999988764 45678999999999999999999999999


Q ss_pred             HHHHHHHHHH--HhcCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhh-cCChhHHHHHHHHHHHHcCCCCCCCCCCCC
Q 011756          146 SVSEAALAWI--VMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT-KGRITDAHNILDKIAQFNQTSLPSGNLTSD  222 (478)
Q Consensus       146 ~~~~~~~~~~--~~~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  222 (478)
                      .+++..++.-  +.+...|++++.+..+|+++.++..+++|||||||.. |||.|||+|.+++++..+..+         
T Consensus       165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~---------  235 (485)
T KOG0569|consen  165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVE---------  235 (485)
T ss_pred             HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcch---------
Confidence            9999877653  4456679999999999999999999999999999999 899999999999997543211         


Q ss_pred             CCCCcccccCCCCcccccccccccccccccccchhhcccC-cchHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhC
Q 011756          223 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFG------NSFVYYGIVLLASELSG  295 (478)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~  295 (478)
                        .+.+++.++.++        ++  ..++...++.++++ +++|+...+...+.++      +...+|+..++..    
T Consensus       236 --~~~e~~~~e~~~--------~~--~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~----  299 (485)
T KOG0569|consen  236 --AEIEEMLREIEE--------EE--LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT----  299 (485)
T ss_pred             --hHHHHHHHHHHH--------hc--cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH----
Confidence              000000000000        00  00001124555555 4555554444443333      3445666665543    


Q ss_pred             CCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hch---hHHH
Q 011756          296 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQS---NILL  369 (478)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~---~~~---~~~~  369 (478)
                       .           +......-......+...++..+++.+++||.|||++++.+..++.++.+.+..   ..+   .+..
T Consensus       300 -a-----------G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~  367 (485)
T KOG0569|consen  300 -A-----------GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLS  367 (485)
T ss_pred             -c-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence             1           111122223345566778999999999999999999999887766654443321   111   1211


Q ss_pred             ----HHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 011756          370 ----TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  445 (478)
Q Consensus       370 ----~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~  445 (478)
                          .........+..|+.++.|.+.+|++|++.|+++.+++..+.++++++..+.++++.+..+. ..+++|.+.+.+.
T Consensus       368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~  446 (485)
T KOG0569|consen  368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIF  446 (485)
T ss_pred             HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence                12222333456688889999999999999999999999999999999999999988877765 6788899999999


Q ss_pred             HHHHHhccccccCcccchhhcccccc
Q 011756          446 VVVILLIPFETKGKELVNTIDGVSNS  471 (478)
Q Consensus       446 ~~~~~~~~pet~g~~l~~~~~~~~~~  471 (478)
                      .+..++++||||||+..|+.++.++.
T Consensus       447 ~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  447 LIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            99999999999999999988876543

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=3e-38  Score=326.00  Aligned_cols=407  Identities=31%  Similarity=0.536  Sum_probs=292.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH--HhHHhhhhhcCCC---cchhhHHHHHHHHHHHH---------
Q 011756           12 LDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILS--FVGPAVKSEWGLS---SSEESLITTVVFAGMMS---------   77 (478)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~---~~~~~~~~s~~~~G~~~---------   77 (478)
                      .|+..+..+.+++++..... +.....+..|....+  ...|++.+||+++   +.+.++..+++++|.++         
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~  151 (505)
T TIGR00898        73 VDQWANPSLLGCEPLKLSDL-GLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLS  151 (505)
T ss_pred             ccchhhhcccccccchhccc-CCCCCCCCCCCcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence            34444555566666543322 334444555544444  4578899999999   78899999999887665         


Q ss_pred             --------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHH
Q 011756           78 --------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS  148 (478)
Q Consensus        78 --------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~  148 (478)
                              ++.+.++..+++++.++++|++.+++.|++.|++.|.. +....++.|++|+++|++..++.+.++.+|.++
T Consensus       152 Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~  231 (505)
T TIGR00898       152 DRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL  231 (505)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH
Confidence                    55566777788888899999999999999999999885 466778999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcc
Q 011756          149 EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  228 (478)
Q Consensus       149 ~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (478)
                      ++.+++.+.   +||+.|++.+++.++..+..+++||||||+..++|.||+++.+++..+.|+++.+++..        +
T Consensus       232 ~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~--------~  300 (505)
T TIGR00898       232 LPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL--------S  300 (505)
T ss_pred             HHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHH--------h
Confidence            998887653   49999999999998887777889999999999999999999999998877543211000        0


Q ss_pred             cccCCCCcccccccccccccccccccchhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccc
Q 011756          229 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  307 (478)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  307 (478)
                      ..   .++ +     ..++   + +..+.++++ ++++++.++..+..++...+.||+...+.+.+.             
T Consensus       301 ~~---~~~-~-----~~~~---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  354 (505)
T TIGR00898       301 LS---LEK-D-----LSSS---K-KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG-------------  354 (505)
T ss_pred             hh---hhh-h-----hhhc---c-CCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC-------------
Confidence            00   000 0     0000   0 001234444 456666666666777777777887766544221             


Q ss_pred             cCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHHHHhhhhhh
Q 011756          308 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--ILLTALLSGARMFSMGTFI  385 (478)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~  385 (478)
                           .+.+.+..+.++..+++.++.++++||+|||+.+..+..+.++..+.+....+.  ...........++..+.++
T Consensus       355 -----~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (505)
T TIGR00898       355 -----GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQ  429 (505)
T ss_pred             -----CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence                 112344556677889999999999999999999888776665554443332221  2222333333344445567


Q ss_pred             hhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcccchh
Q 011756          386 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT  464 (478)
Q Consensus       386 ~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~~~  464 (478)
                      ..+.+.+|++|++.|+++.|+.+.++++|++++|.+.+ + ...+...++.+++++.+++.+..+ +.|||++++++|+
T Consensus       430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~t  505 (505)
T TIGR00898       430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPET  505 (505)
T ss_pred             HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCCC
Confidence            78899999999999999999999999999999999877 3 333445667777777777766655 4589999999874

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-38  Score=302.24  Aligned_cols=423  Identities=22%  Similarity=0.315  Sum_probs=297.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhc-C-------CCcchhhHHHHHHHHHHHH--------------
Q 011756           20 GFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEW-G-------LSSSEESLITTVVFAGMMS--------------   77 (478)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~~~~~~~s~~~~G~~~--------------   77 (478)
                      +.+++|...+.++++|.+.|+||.+.++.+.|.+.+.| +       +++.-.+.+..+.++|.++              
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            45899999999999999999999999999999998775 2       4455567777777777555              


Q ss_pred             ---HHHHHHHHHHHHHHHhhhc-------hHHHHHHHHHHhhcccCchhh-HHHHHhhccCCCCchhHHHHHHHHHHHHH
Q 011756           78 ---ILGGALVTFVAGLLSAFSP-------NYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFGS  146 (478)
Q Consensus        78 ---~~~~~~~~~i~~~~~~~a~-------~~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~  146 (478)
                         ....+++..+++++++++.       -..++.+.|++.|+|+|+.++ ..+..+|.+-+++||...+.....+.+|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence               2334556667776666542       257899999999999999865 45678999999999999999888899998


Q ss_pred             HHHHHHHHHHhc-------C--------cchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCCh-hHHHHHHHHHHHHc
Q 011756          147 VSEAALAWIVMP-------I--------LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRI-TDAHNILDKIAQFN  210 (478)
Q Consensus       147 ~~~~~~~~~~~~-------~--------~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~-~~a~~~l~~~~~~~  210 (478)
                      +.+.+++..+..       .        .=||..|.++.+|+++.++.|+.||||+||...+.|+ ++|.   ++.    
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~----  266 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDM----  266 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcc----
Confidence            888887766421       1        1399999999999999999999999999998544332 3322   111    


Q ss_pred             CCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011756          211 QTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLA  290 (478)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (478)
                      .++.. .        ++++..+..+         . ....++....+..++..++-+..+.....|+...+.+|+..+++
T Consensus       267 ~k~~~-~--------~~~~~~~~~~---------~-~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~  327 (538)
T KOG0252|consen  267 KKVLS-V--------DIEAESTAES---------D-VPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQ  327 (538)
T ss_pred             ccccc-c--------ccchhhcccc---------C-CCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHH
Confidence            11100 0        0000000000         0 00011111223333333344555566677888888899998888


Q ss_pred             HhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhH---
Q 011756          291 SELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI---  367 (478)
Q Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~---  367 (478)
                      ..+..+.+..++.....  ..-.....+.++..+..+||++++.+++|++|||++.+.++++.+++.+.+...+++.   
T Consensus       328 s~I~~~ig~~~~~~~~~--~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~  405 (538)
T KOG0252|consen  328 SVIFSAIGVIPSANTYH--ELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENT  405 (538)
T ss_pred             HHHHHhhccCCCcchHH--HHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccccc
Confidence            77664333222211100  0001233466777788899999999999999999999999998888877776654421   


Q ss_pred             -HHHHHH-HHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhh-----ccchhHHHHHHHH
Q 011756          368 -LLTALL-SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT-----SCHQTAAILLLEA  440 (478)
Q Consensus       368 -~~~~~~-~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~-----~~~~~~~~~~~~~  440 (478)
                       ...++. +...+...|++....++++|.||+++|+++.|++.+.|.+|++++.+.+.++.+     ..+....+++++.
T Consensus       406 ~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~  485 (538)
T KOG0252|consen  406 IGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAG  485 (538)
T ss_pred             CceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHH
Confidence             112222 233344678888899999999999999999999999999999999999888877     4444567888888


Q ss_pred             HHHHHHHHHHhccccccCcccchhhcccccc
Q 011756          441 LIVLSVVVILLIPFETKGKELVNTIDGVSNS  471 (478)
Q Consensus       441 ~~~i~~~~~~~~~pet~g~~l~~~~~~~~~~  471 (478)
                      +++++.++.+++ ||||||++||.-++.+..
T Consensus       486 ~~~~gi~~T~l~-pEtk~~~leei~~e~~~~  515 (538)
T KOG0252|consen  486 CMLLGILFTLLI-PETKGKSLEEISNEEESN  515 (538)
T ss_pred             HHHHhHheeEEe-ecccccCHHHhcChhhcc
Confidence            888887666665 699999999876555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=5.3e-34  Score=292.56  Aligned_cols=381  Identities=16%  Similarity=0.174  Sum_probs=246.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcch-hhHH-----HHHHHHHHHH-----------------HHHHH
Q 011756           26 GLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSE-ESLI-----TTVVFAGMMS-----------------ILGGA   82 (478)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-----~s~~~~G~~~-----------------~~~~~   82 (478)
                      +.+.+.+.+|+++|++|...+++..|.+.++|+.+.++ .+++     .++.++|..+                 +..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            56777888999999999999999999999999765533 2332     2333444332                 67778


Q ss_pred             HHHHHHHHHHhhhchHHH--------HHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011756           83 LVTFVAGLLSAFSPNYIS--------LLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA  153 (478)
Q Consensus        83 ~~~~i~~~~~~~a~~~~~--------l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  153 (478)
                      ++++++++++++++|+.+        ++++|+++|+|.|+.. ...++++|++|+|+||+..++.+.+..+|.++++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999975        8999999999999874 5667899999999999999999988888888887665


Q ss_pred             HHHh--------cCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 011756          154 WIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  225 (478)
Q Consensus       154 ~~~~--------~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (478)
                      ..+.        +.+|||++|++.++++++.++.+.++||||+|+..+++.++..+          +             
T Consensus       175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~----------~-------------  231 (490)
T PRK10642        175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR----------E-------------  231 (490)
T ss_pred             HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc----------c-------------
Confidence            4332        36899999999887777666777889999998644332211000          0             


Q ss_pred             CcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccc
Q 011756          226 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  305 (478)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  305 (478)
                      ...+    .+               +   .++++++++ +++.....+...+.....+|+...+.|.+.....       
T Consensus       232 ~~~~----~~---------------~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-------  281 (490)
T PRK10642        232 GLQD----GP---------------K---VSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNL-------  281 (490)
T ss_pred             cccc----cc---------------c---CCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            0000    00               0   012223322 2333333333344455667777777766442110       


Q ss_pred             cccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HH--hhchhHHHHHHHHHHHHHhhh
Q 011756          306 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LV--TLQSNILLTALLSGARMFSMG  382 (478)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~g  382 (478)
                         +.+............++.+++.++.++++||+|||+.+..+.....+.... +.  ...+........+...++..+
T Consensus       282 ---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  358 (490)
T PRK10642        282 ---HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC  358 (490)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence               111111122233445667788889999999999999877665433221111 11  111111111111111122222


Q ss_pred             hhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHHhccccccCccc
Q 011756          383 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKGKEL  461 (478)
Q Consensus       383 ~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l  461 (478)
                      ..+....+.+|++|++.|+++.|+.+.++++++.++|.+.+.+.+..+ ...+..+...+++++.+..+ +.|||+++.+
T Consensus       359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~~~  437 (490)
T PRK10642        359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCCCC
Confidence            334556777899999999999999999999999999999887766433 23344444555555555444 4589998766


Q ss_pred             ch
Q 011756          462 VN  463 (478)
Q Consensus       462 ~~  463 (478)
                      ++
T Consensus       438 ~~  439 (490)
T PRK10642        438 KG  439 (490)
T ss_pred             CC
Confidence            54

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=8.9e-34  Score=290.78  Aligned_cols=406  Identities=21%  Similarity=0.263  Sum_probs=266.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhc--------CCCcchhhHHHHHHHHHHHH----------------
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEW--------GLSSSEESLITTVVFAGMMS----------------   77 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~s~~~~G~~~----------------   77 (478)
                      .++|.++.+.+.++.+.+++|...++...|.++++|        ++++.+.+++.+.+++|..+                
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            578899999999999999999999999999988877        78888999999999887655                


Q ss_pred             -HHHHHHHHHHHHHHHhhh------------chHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHH
Q 011756           78 -ILGGALVTFVAGLLSAFS------------PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT  143 (478)
Q Consensus        78 -~~~~~~~~~i~~~~~~~a------------~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~  143 (478)
                       ++.+.+++.++++.++++            +++..++++|+++|++.|... ...++++|++|+|+||+.+++.+.+..
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence             445555666666665542            235778999999999999864 567789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCC
Q 011756          144 FGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  215 (478)
Q Consensus       144 ~G~~~~~~~~~~~~--------~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~  215 (478)
                      +|.++++.++..+.        +.+|||++|++.+++.++..+..+++||||+|+..++|.|++++.+++..+.+..   
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~---  243 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA---  243 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH---
Confidence            99999887766542        3579999999999888887777888999999999999999888777665321100   


Q ss_pred             CCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHH-H-HHHHHHHHHHHHHHHHHHhh
Q 011756          216 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILL-W-VLYFGNSFVYYGIVLLASEL  293 (478)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l  293 (478)
                              +...++.         ... .+++  .+    .....+.  +....... . ...+.....++....+.|.+
T Consensus       244 --------~~~~~~~---------~~~-~~~~--~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  297 (479)
T PRK10077        244 --------TQALQEI---------KHS-LDHG--RK----TGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEI  297 (479)
T ss_pred             --------HHHHHHH---------HHH-HHHh--hh----hhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence                    0000000         000 0000  00    0000110  00111111 0 11111122223333344433


Q ss_pred             hCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---chhHHH-
Q 011756          294 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILL-  369 (478)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~---~~~~~~-  369 (478)
                      ....+           ..............+..+++.+++++++||+|||+.+..+..+.++..+.+...   ...... 
T Consensus       298 ~~~~g-----------~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        298 FKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHcC-----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            21111           111111223334556678889999999999999999887776555443333211   111111 


Q ss_pred             -HHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHh------hccchhHHHHHHHHHH
Q 011756          370 -TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV------TSCHQTAAILLLEALI  442 (478)
Q Consensus       370 -~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~------~~~~~~~~~~~~~~~~  442 (478)
                       ..+......+..+..+..+.+.+|.+|++.|+++.|+++.++++++++++.+.+.+.      +..+....+.++++.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence             111111111222222456899999999999999999999999999999988776443      2233345677777777


Q ss_pred             HHHHHHHHhccccccCcccchhhcc
Q 011756          443 VLSVVVILLIPFETKGKELVNTIDG  467 (478)
Q Consensus       443 ~i~~~~~~~~~pet~g~~l~~~~~~  467 (478)
                      +++.++.+++.||||+|+++|..++
T Consensus       447 ~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        447 VLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHHhccccCCCCCHHHHHHH
Confidence            7777777888899999998875443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=291.30  Aligned_cols=411  Identities=23%  Similarity=0.326  Sum_probs=279.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHH--HHHHHHhHHhhhhhcC-----CCc--chhhHHHHHHHHHHHH----------------
Q 011756           23 KFQGLALAYSGLGWFSEAME--VMILSFVGPAVKSEWG-----LSS--SEESLITTVVFAGMMS----------------   77 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----l~~--~~~~~~~s~~~~G~~~----------------   77 (478)
                      +......+...++.+..++|  ....+...+.++++..     .+.  .+.+|+.++..+|..+                
T Consensus        41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~  120 (513)
T KOG0254|consen   41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK  120 (513)
T ss_pred             eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            45666667777777888887  4444555555555332     111  3448999998776544                


Q ss_pred             -HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011756           78 -ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWI  155 (478)
Q Consensus        78 -~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  155 (478)
                       ++.+.+++.++++++++++|+.+++++|+++|+|.|... +...|.+|++|++.||...+..+..+.+|.+++..++..
T Consensus       121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~  200 (513)
T KOG0254|consen  121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG  200 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             677888999999999999999999999999999999864 566789999999999999999999999999998666655


Q ss_pred             HhcC-cchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCC
Q 011756          156 VMPI-LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTS  234 (478)
Q Consensus       156 ~~~~-~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (478)
                      .... ++||.++++..+|+++..+..+++||||||+.++||.+||++.+++++..+..+         .+.+.++..   
T Consensus       201 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~---------~~~~~~~~~---  268 (513)
T KOG0254|consen  201 TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED---------VEVELELLK---  268 (513)
T ss_pred             hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc---------hHHHHHHHH---
Confidence            4322 589999999999999998888889999999999999999999999997532110         011111110   


Q ss_pred             CcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhCCCCCccccccccc
Q 011756          235 EETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFG------NSFVYYGIVLLASELSGSQSKCSSSILLSE  308 (478)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  308 (478)
                        ...........   +  .....++++++.+++..+...+...      +...||...++..     .           
T Consensus       269 --~~~~~~~~~~~---~--~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-----~-----------  325 (513)
T KOG0254|consen  269 --IKLLVEAEVAE---G--KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-----A-----------  325 (513)
T ss_pred             --HHHHHhhhccc---c--cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-----c-----------
Confidence              00000000000   0  0123445556666666654443332      2233454444321     0           


Q ss_pred             CccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---h--ch-------hHHH-HHHHHH
Q 011756          309 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---L--QS-------NILL-TALLSG  375 (478)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~---~--~~-------~~~~-~~~~~~  375 (478)
                      +..+.. ....++..+..+++.+++.++.||+|||+.++.+.....++.+.+..   .  .+       .+.. ......
T Consensus       326 g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (513)
T KOG0254|consen  326 GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLF  404 (513)
T ss_pred             CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHH
Confidence            111111 33455666778888889999999999999998877655544433321   1  10       0111 111222


Q ss_pred             HHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-HHHhccc
Q 011756          376 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVV-VILLIPF  454 (478)
Q Consensus       376 ~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~p  454 (478)
                      ...+..+..++.|.+.+|++|.+.|+++.+++..+++..+.+....+..+....+....+.++.+.+.+..+ .++++.|
T Consensus       405 v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~p  484 (513)
T KOG0254|consen  405 IFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVP  484 (513)
T ss_pred             HHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcc
Confidence            223445566778999999999999999999999999998888777666555543224566677777777767 7888999


Q ss_pred             cccCcccchhhcccc
Q 011756          455 ETKGKELVNTIDGVS  469 (478)
Q Consensus       455 et~g~~l~~~~~~~~  469 (478)
                      ||||++++|..+...
T Consensus       485 ETkg~sleei~~~~~  499 (513)
T KOG0254|consen  485 ETKGLTLEEINELFE  499 (513)
T ss_pred             cCCCCcHHHHHHHHH
Confidence            999999998766443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=1.8e-40  Score=337.72  Aligned_cols=399  Identities=29%  Similarity=0.493  Sum_probs=270.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhh--hhcCCCc---------chhhHHHHHHHHHHHH-----------------HHHHHH
Q 011756           32 SGLGWFSEAMEVMILSFVGPAVK--SEWGLSS---------SEESLITTVVFAGMMS-----------------ILGGAL   83 (478)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~---------~~~~~~~s~~~~G~~~-----------------~~~~~~   83 (478)
                      +.++-+.+++|....+...+...  .++..++         .+.+++.+..++|..+                 ++.+.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            34556899999999988876654  2222222         2457788888877655                 566777


Q ss_pred             HHHHHHHHHhhhc---hHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011756           84 VTFVAGLLSAFSP---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI  159 (478)
Q Consensus        84 ~~~i~~~~~~~a~---~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~  159 (478)
                      +..+++++.++++   |+..+.++|++.|+|.|... ....|+.|..|+|+||+..+..+.++.+|.+++..++......
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8888999999999   99999999999999999864 5677899999999999999999999999999988887665333


Q ss_pred             ---cchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCc
Q 011756          160 ---LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEE  236 (478)
Q Consensus       160 ---~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (478)
                         ++||+.+.+.++|+++.++.+.++||||||+.+|||+|||++.++++++.+..+   +        +.+++.++.++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~---~--------~~~~~~~~~~~  233 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED---E--------EIEEIKAEKKE  233 (451)
T ss_pred             cccccccccccccccccccccccccccccccceeccccccccccccccccccccccc---c--------ccccccccccc
Confidence               459999999999999888888999999999999999999999998865332111   0        01111000000


Q ss_pred             ccccccccccccccccccchhhcccCc-chHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCCCCCcccccccccCccchh
Q 011756          237 TPLLSSARKRTTVRKSGFSSFLMLFSP-RFFKTTILLWVLYFGNSFVY-YGIVLLASELSGSQSKCSSSILLSENVQDAS  314 (478)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (478)
                      .+          +.+   ...++++++ +++++......+........ +....+.+.+.....           ..+. 
T Consensus       234 ~~----------~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~-----------~~~~-  288 (451)
T PF00083_consen  234 SQ----------ESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAG-----------ISNS-  288 (451)
T ss_pred             cc----------ccc---eeeeeccccccccccccccccccccccccccccccccccccccccc-----------cccc-
Confidence            00          000   123344443 23344433333222222111 122222222221111           0001 


Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h--hch----hHHHHHHHH-HHHHHhhhhh
Q 011756          315 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T--LQS----NILLTALLS-GARMFSMGTF  384 (478)
Q Consensus       315 ~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~--~~~----~~~~~~~~~-~~~~~~~g~~  384 (478)
                       .....+..+..+++.+++.+++||+|||+.+..+...++++.+.+.   .  ...    ......... ...++..+..
T Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~  367 (451)
T PF00083_consen  289 -FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWG  367 (451)
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccc
Confidence             1222344455677788888999999999988877765554433332   1  111    111111111 1122333555


Q ss_pred             hhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcccchh
Q 011756          385 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT  464 (478)
Q Consensus       385 ~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~~~  464 (478)
                      +..+.+.+|+||+++|+++.|+++.+++++++++|.+.+.+.+..+....+.++++++++..++.+++.||||||+++|.
T Consensus       368 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei  447 (451)
T PF00083_consen  368 PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI  447 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH
Confidence            67789999999999999999999999999999999987776665543566778888888888899999999999999987


Q ss_pred             hcc
Q 011756          465 IDG  467 (478)
Q Consensus       465 ~~~  467 (478)
                      .++
T Consensus       448 ~~~  450 (451)
T PF00083_consen  448 QEM  450 (451)
T ss_pred             Hhh
Confidence            653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.5e-32  Score=280.71  Aligned_cols=370  Identities=32%  Similarity=0.467  Sum_probs=264.5

Q ss_pred             chhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHh
Q 011756           62 SEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFM  123 (478)
Q Consensus        62 ~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~  123 (478)
                      ....+..+.+++|.++                 ++.+.++..++++.+++++|++.+++.|+++|++.++. .+...++.
T Consensus       118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~  197 (521)
T KOG0255|consen  118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVA  197 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhhe
Confidence            3456677888887666                 66778888899999999999999999999999998776 46677889


Q ss_pred             hccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHH
Q 011756          124 EFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNIL  203 (478)
Q Consensus       124 E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l  203 (478)
                      |+.++|+|+.+..+....+..|.+. +..+.++.+  +||+.+++..+|+.+.++.+++.||||||+..|||.|||.+.+
T Consensus       198 E~~~~~~R~~~~~~~~~~~~~~~~~-~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l  274 (521)
T KOG0255|consen  198 EIVSPKQRGLALTLGGFFFVGGLML-PAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKIL  274 (521)
T ss_pred             eecCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHH
Confidence            9999999999999955555555444 444444433  9999999999999988777666779999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccC-cchHHHHHHHHHHHHHHHHH
Q 011756          204 DKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFV  282 (478)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~  282 (478)
                      ++..+.|+++....+.       .+...   +.++      ++ .....+...+.++++ ++.++.++.+++.++.....
T Consensus       275 ~~~a~~n~~~~~~~~~-------~~~~~---~~~~------~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~  337 (521)
T KOG0255|consen  275 KKIAKLNGRKLSVKEL-------LRLEL---LLRP------LK-LLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLV  337 (521)
T ss_pred             HHHHhhcCCCCCcHHH-------HHHHH---HhhH------hh-hhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHH
Confidence            9999877443221110       00000   0000      00 000011112444554 55778888888888888889


Q ss_pred             HHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 011756          283 YYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT  362 (478)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~  362 (478)
                      ||+..+....+.                  .+.+.+..+......++....+...|+.|||..+..+.....+.++....
T Consensus       338 y~gl~~~~~~lg------------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~  399 (521)
T KOG0255|consen  338 YYGLSLNVSGLG------------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGW  399 (521)
T ss_pred             HHhhhhhhhhcC------------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            999877654322                  23344555555678899999999999999999988887766655544443


Q ss_pred             h-chhH--HHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHH
Q 011756          363 L-QSNI--LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLE  439 (478)
Q Consensus       363 ~-~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~  439 (478)
                      . ....  ..........++....+...+.+.+|++|+.+|+.+.+.++.+++++++++|++...... ........+++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~  478 (521)
T KOG0255|consen  400 LPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFG  478 (521)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHH
Confidence            2 2121  233333444444455566779999999999999999999999999999999987543322 22233333456


Q ss_pred             HHHHHHHHHHHhccccccCcccchhhccccc
Q 011756          440 ALIVLSVVVILLIPFETKGKELVNTIDGVSN  470 (478)
Q Consensus       440 ~~~~i~~~~~~~~~pet~g~~l~~~~~~~~~  470 (478)
                      ....+.+++..++.|||++++++|+.++.++
T Consensus       479 ~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~  509 (521)
T KOG0255|consen  479 WLALLLGLLSLLLLPETKGKPLPGTLLDAEN  509 (521)
T ss_pred             HHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence            6777777777778899999999998888875

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=2.6e-30  Score=261.35  Aligned_cols=369  Identities=19%  Similarity=0.208  Sum_probs=231.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcC---CCcchhhHHHHHHHHHHH---H-----------------
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWG---LSSSEESLITTVVFAGMM---S-----------------   77 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~s~~~~G~~---~-----------------   77 (478)
                      .+++++..+..+++|+++|++|+..+++..|.+.+||+   .++.+.+...+.+.++..   +                 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34567777888889999999999999999999999985   444444444444433322   1                 


Q ss_pred             HHHHHHHHHHHHHHHhhhchHH--------HHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHH
Q 011756           78 ILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS  148 (478)
Q Consensus        78 ~~~~~~~~~i~~~~~~~a~~~~--------~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~  148 (478)
                      +..+.++++++++++++++|+.        .++++|+++|+|.|+.. ...++++|++|+|+||+..++.+.+...|.++
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            5667788888999999999875        59999999999999864 56788999999999999999999888888888


Q ss_pred             HHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCC
Q 011756          149 EAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  220 (478)
Q Consensus       149 ~~~~~~~~~--------~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  220 (478)
                      ++.+...+.        +.+|||++|++.++++++.++.+..+||||++..++                 .+        
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~-----------------~~--------  230 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA-----------------LK--------  230 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh-----------------hc--------
Confidence            776654432        367999999999999988777777899998742100                 00        


Q ss_pred             CCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 011756          221 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  300 (478)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  300 (478)
                                    +.                  .+++++++.  ++.........+.....+|+...|.|.+.....  
T Consensus       231 --------------~~------------------~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~--  274 (432)
T PRK10406        231 --------------EA------------------GSLKGLWRN--RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTA--  274 (432)
T ss_pred             --------------cc------------------ccHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence                          00                  011112221  122222222233334556777677665432110  


Q ss_pred             ccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH--hh-c-hhHHHHHHHHHH
Q 011756          301 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV--TL-Q-SNILLTALLSGA  376 (478)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~~  376 (478)
                              +.+.........+..+...++..+.|+++||+|||+.+..+..+.++....+.  .. . +......+....
T Consensus       275 --------g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (432)
T PRK10406        275 --------GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCA  346 (432)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence                    11111111112233344556667789999999999977665443332222111  11 1 111111111111


Q ss_pred             HHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhH-hHhHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHhccc
Q 011756          377 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLIPF  454 (478)
Q Consensus       377 ~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~l-g~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~p  454 (478)
                      .+......+..+.+.+|.+|+++|+++.|++++++++ ++...|.+.. +++..+.. ..+++.+++.+++.+..++  .
T Consensus       347 ~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~--l  423 (432)
T PRK10406        347 LLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM--L  423 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH--h
Confidence            1111122244678889999999999999999999886 3445777666 44443422 3344445555565555554  3


Q ss_pred             cccCccc
Q 011756          455 ETKGKEL  461 (478)
Q Consensus       455 et~g~~l  461 (478)
                      +++||+.
T Consensus       424 ~~~~~~~  430 (432)
T PRK10406        424 HRKGKGM  430 (432)
T ss_pred             hhccccc
Confidence            6677654

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=8.6e-30  Score=257.68  Aligned_cols=368  Identities=17%  Similarity=0.180  Sum_probs=233.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhhc--CCCcchhhHHHHH-----HHHHH---------HH--------
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPA-VKSEW--GLSSSEESLITTV-----VFAGM---------MS--------   77 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~l~~~~~~~~~s~-----~~~G~---------~~--------   77 (478)
                      .+++++...+.+++++|++|+..+++..|. +.+++  ++++. .+++.+.     .+++.         +.        
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            566678888889999999999999998875 56666  56655 5665432     11111         11        


Q ss_pred             HHHHHHHHHHHHHHHhhhchHH--------HHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHH
Q 011756           78 ILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS  148 (478)
Q Consensus        78 ~~~~~~~~~i~~~~~~~a~~~~--------~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~  148 (478)
                      +..+.+++.++++++++++|+.        .++++|+++|++.|+.. ....+..|+.|+|+||+..+..+.++.+|.++
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            5667788888999999999987        58999999999999874 55678999999999999999999999999998


Q ss_pred             HHHHHHHHh--------cCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCC
Q 011756          149 EAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  220 (478)
Q Consensus       149 ~~~~~~~~~--------~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  220 (478)
                      ++.+...+.        ..+|||++|.+.+++.++.+..+..+||||+|..+++|.++.                     
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~---------------------  235 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA---------------------  235 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc---------------------
Confidence            877665443        257999999999988877666777899999875332111000                     


Q ss_pred             CCCCCCcccccCCCCcccccccccccccccccccchhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 011756          221 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSK  299 (478)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  299 (478)
                             +      ++.+                 ..+.++ +++.   ........+.....+|....|.|.+..... 
T Consensus       236 -------~------~~~~-----------------~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-  281 (438)
T PRK09952        236 -------K------KRIP-----------------VIEALLRHPGA---FLKIIALRLCELLTMYIVTAFALNYSTQNL-  281 (438)
T ss_pred             -------c------ccCC-----------------HHHHHHHchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence                   0      0000                 000011 1211   122222233344445555555544321100 


Q ss_pred             cccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hchhH-HHHHHHHH
Q 011756          300 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNI-LLTALLSG  375 (478)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~  375 (478)
                               +.+.........+.....+++..+.++++||+|||+.+..+..+..+..+....   ..+.. ........
T Consensus       282 ---------g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  352 (438)
T PRK09952        282 ---------GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML  352 (438)
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                     011111111122334556677788999999999999877665444332222211   11111 11111122


Q ss_pred             HHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHh-HhHhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHHHhc
Q 011756          376 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCH--QTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       376 ~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~-lg~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      ..+......+..+.+.+|.+|++.|+++.|+.+.+++ +++.++|.+.+.+.+..+  +...+.+.+++.+++.+..+. 
T Consensus       353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-  431 (438)
T PRK09952        353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-
Confidence            2222223345678899999999999999999988877 789999999998876432  234455556666666655554 


Q ss_pred             cccc
Q 011756          453 PFET  456 (478)
Q Consensus       453 ~pet  456 (478)
                      .+||
T Consensus       432 ~~~~  435 (438)
T PRK09952        432 MKDN  435 (438)
T ss_pred             cccc
Confidence            4564

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=3e-30  Score=263.78  Aligned_cols=414  Identities=20%  Similarity=0.278  Sum_probs=264.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCC--------cchhhHHHHHHHHHHHH-----------------
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLS--------SSEESLITTVVFAGMMS-----------------   77 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~s~~~~G~~~-----------------   77 (478)
                      +..+...+.+.++.+.+++|...++...|.+..+++.+        ..+.+++.+.+.++..+                 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            33445556677788889999999999999988888776        78899999998877555                 


Q ss_pred             HHHHHHHHHHHHHHHhh---hchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011756           78 ILGGALVTFVAGLLSAF---SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA  153 (478)
Q Consensus        78 ~~~~~~~~~i~~~~~~~---a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  153 (478)
                      ++.+.+++.++.+++++   ..+++.++++|++.|+|.|... ....++.|++|+++|+++.++.+.+..+|.++++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            45556666666666644   3445689999999999988764 4567899999999999999999999999999999988


Q ss_pred             ---HHHhcCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccc
Q 011756          154 ---WIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  230 (478)
Q Consensus       154 ---~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (478)
                         ....+..+||+.|++.+++.++.++..+++||+|+++..+++.+++++..++....+.++           .+..+.
T Consensus       184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  252 (481)
T TIGR00879       184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED-----------KELLDE  252 (481)
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc-----------HHHHHH
Confidence               555567899999999887777777777889999999988888877766555442111000           000000


Q ss_pred             cCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCc
Q 011756          231 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  310 (478)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (478)
                      ....+.    ....++. ..+..+..+...+++..++..+.....++.....+.....+.|.+....+           .
T Consensus       253 ~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~  316 (481)
T TIGR00879       253 LELIDI----KRSIEKR-SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAG-----------V  316 (481)
T ss_pred             HHHHHH----HHHHHHh-hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcC-----------C
Confidence            000000    0000000 00000112222222111222222222222222212222233333221111           1


Q ss_pred             cchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh-ch------hHHHH-HHHHHHHHH
Q 011756          311 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL-QS------NILLT-ALLSGARMF  379 (478)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~~-~~------~~~~~-~~~~~~~~~  379 (478)
                      +............++.+++.+++++++||+|||+.+..+..+.++..+.+.   .. ..      ..... .......++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (481)
T TIGR00879       317 STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFF  396 (481)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHH
Confidence            111112233445566788999999999999999988776555444333322   11 11      11111 111222222


Q ss_pred             hhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCc
Q 011756          380 SMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  459 (478)
Q Consensus       380 ~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~  459 (478)
                      ..+..+..+.+.+|.+|++.|+++.|+.+...+++++++|.+.+.+.+..+....+.+++++++++.++.+++.||+|++
T Consensus       397 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~  476 (481)
T TIGR00879       397 AMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGR  476 (481)
T ss_pred             HccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCC
Confidence            33333556778899999999999999999999999999999988887765555667778888888888888888999988


Q ss_pred             ccch
Q 011756          460 ELVN  463 (478)
Q Consensus       460 ~l~~  463 (478)
                      +++|
T Consensus       477 ~~~~  480 (481)
T TIGR00879       477 TLEE  480 (481)
T ss_pred             Chhh
Confidence            7653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.3e-29  Score=254.28  Aligned_cols=374  Identities=17%  Similarity=0.238  Sum_probs=240.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .|.++.+...+++++++|++|+..+++..|.+++|+|+++++.|++.+.+++|..+                 +..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            35678888899999999999999999999999999999999999999998877554                 5566778


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-----  158 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-----  158 (478)
                      ++++++++++++|++++++.|++.|++.|... ....++.|++|+++||+.+++++.+..+|.++++.++..+.+     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            88888899999999999999999999998864 455678999999999999999999999999999999877653     


Q ss_pred             -CcchHHHHHHhhHHHHHH-HHHHHhcCCCch---hhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCC
Q 011756          159 -ILTWRWLLALSAIPAFVL-LIFIVFMPESPR---YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST  233 (478)
Q Consensus       159 -~~~WR~~f~i~~i~~~l~-~~~~~~lpESP~---~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (478)
                       ..|||+.|.+.++++++. ++.++++||+|+   |+..    +| ++..++..+.+..+             .++..+.
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~-~~~~~~~~~~~~~~-------------~~~~~~~  224 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----ED-KKALKEMIDNDQLT-------------LEQPEGA  224 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HH-HHHHHHHHHhcccc-------------ccccccc
Confidence             369999999998888765 445667899995   3221    11 11111111111000             0000000


Q ss_pred             CCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccch
Q 011756          234 SEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA  313 (478)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (478)
                      .++++            ......++++++++.    +.....+++....+++...|.|.+..+...         ..+..
T Consensus       225 ~~~~~------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~---------~~s~~  279 (412)
T TIGR02332       225 FAHAA------------MPQRSMLREIFTPAI----MLYTLAYFCLTNTLSAINIWTPQILQSFNQ---------GSSNI  279 (412)
T ss_pred             ccccc------------ccHHHHHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCcHH
Confidence            00000            000011223333332    233334444555566666676665532110         01111


Q ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 011756          314 SVYINVFITSFAELPGLLTAALLVDRVGRKLSM-TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP  392 (478)
Q Consensus       314 ~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  392 (478)
                      ..........++.++|.++.++++||++||+.. ........+.........+............+......+..+....
T Consensus       280 ~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  359 (412)
T TIGR02332       280 MIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPD  359 (412)
T ss_pred             HhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcc
Confidence            111223455677888999999999999977743 3322222222211111112211111111111111122233456667


Q ss_pred             cccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHHH
Q 011756          393 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLL  438 (478)
Q Consensus       393 E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~  438 (478)
                      |.+|++.|+++.|+.+.++++|++++|.+.+.+.+..+ +...+.+.
T Consensus       360 ~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~  406 (412)
T TIGR02332       360 QSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV  406 (412)
T ss_pred             cccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence            89999999999999999999999999999887776654 33344333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1.5e-30  Score=246.00  Aligned_cols=380  Identities=19%  Similarity=0.292  Sum_probs=272.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHH
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGAL   83 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~   83 (478)
                      +.++|+.+++...+|+...++-|-.++++.|.+.+|.++|..|.|.+.|.+.+.+.+                 +..+.+
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            568889999999999999999999999999999999999999999999999876555                 566788


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHH--HHHhcCc
Q 011756           84 VTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA--WIVMPIL  160 (478)
Q Consensus        84 ~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~--~~~~~~~  160 (478)
                      ++.+..++.+++++...+.++-++.|..-|.+ ++....++.|+|+||||+..++++++.++|..+.+++.  ..+..+.
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            88899999999999999999999999988876 45567789999999999999999999999999999888  7777788


Q ss_pred             chHHHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccc
Q 011756          161 TWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPL  239 (478)
Q Consensus       161 ~WR~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (478)
                      +||..|++.++.++++ ++..+.++|+|+=   .|-+.-        ++..+             +..+.+.  +|++  
T Consensus       183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GLP~i--------e~~~~-------------d~~e~~~--~~~~--  234 (448)
T COG2271         183 GWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGLPPI--------EEYRG-------------DPLEIYE--EEKE--  234 (448)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCH--------HHhhc-------------Cchhhhh--hhcc--
Confidence            9999999999888877 4556678888872   222110        00000             0000000  0000  


Q ss_pred             cccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhCCCCCcccccccccCccchhhH
Q 011756          240 LSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVY---YGIVLLASELSGSQSKCSSSILLSENVQDASVY  316 (478)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (478)
                                 +++ .+.++++.+-.. +.-.+|++.+++.+.|   |++..|.|.+..+..          +.+..+..
T Consensus       235 -----------~~~-ls~~~i~~~YVL-~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k----------~~s~~~a~  291 (448)
T COG2271         235 -----------NEG-LTAWQIFVKYVL-KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVK----------GFSLVKAN  291 (448)
T ss_pred             -----------CCC-ccHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----------CCCHHHHH
Confidence                       000 011111111111 1113455555665555   888889887653321          12223333


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHhhh--chHHHHHHHHHH-HHHHHHHHHhhc--hhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 011756          317 INVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIF-VCIFLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFA  391 (478)
Q Consensus       317 ~~~~~~~~~~~~g~~~~~~l~dr~--GRr~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~  391 (478)
                      ....+...++++|++++||++||+  |||.++...+.+ ..+++..+....  +.....++++..+++..|+..+.....
T Consensus       292 ~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a  371 (448)
T COG2271         292 WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAA  371 (448)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            455677889999999999999997  788776554333 333333332222  224455666667777788887888999


Q ss_pred             ccccCcChhHHHHHHHHHHHhH-hHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 011756          392 PEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  451 (478)
Q Consensus       392 ~E~~p~~~R~~~~g~~~~~~~l-g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  451 (478)
                      .|+.|++..|++.|+...++++ |+..+....+.+.+..++.+.|.++.+.++++.+....
T Consensus       372 ~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         372 AEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             hccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 88888777776666666667777766666655544443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.98  E-value=6e-29  Score=251.14  Aligned_cols=382  Identities=19%  Similarity=0.244  Sum_probs=248.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHH
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGAL   83 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~   83 (478)
                      .+++|+..++.+.++++.|++|++..++..|.+++|+|+++.+.+++.+.+.+|..+                 +..+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~   91 (426)
T PRK12307         12 ITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV   91 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            458899888999999999999999999999999999999999999999988777554                 556677


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 011756           84 VTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW  162 (478)
Q Consensus        84 ~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W  162 (478)
                      +..++.++.++++++..++++|++.|+|.|... ....++.|++|+|+|+++.++...+..+|.++++.+...+.+..+|
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            777888888999999999999999999988754 5567889999999999999999999999999999888777778899


Q ss_pred             HHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccc
Q 011756          163 RWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSS  242 (478)
Q Consensus       163 R~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (478)
                      |+.|++..++.++.+......||++++..++.+.               ++       ++.     +    ...+     
T Consensus       172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~---------------~~-------~~~-----~----~~~~-----  215 (426)
T PRK12307        172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG---------------KG-------KHS-----Q----SAWS-----  215 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc---------------cc-------ccc-----c----cchh-----
Confidence            9999987776665555555678887653211000               00       000     0    0000     


Q ss_pred             ccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHH
Q 011756          243 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFIT  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (478)
                               ....+.+++++++..+.........+.....++....+.|.+....+           .+...........
T Consensus       216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~  275 (426)
T PRK12307        216 ---------VFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEG-----------FDTGVVSNLMTAA  275 (426)
T ss_pred             ---------hhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHH
Confidence                     00011223333333222222222222212222223333333321111           1111111223344


Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-chhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      .++.+++.++.+++.||+|||+.+..+..++.+..+..... .+..... ...+...+...+..+..+.+..|.+|++.|
T Consensus       276 ~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  355 (426)
T PRK12307        276 AFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVR  355 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHH
Confidence            56778899999999999999998877665554433322221 1111111 112222122223334556778899999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhH-HHHHHHHHHHHHHHHHHhccccccC
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      +++.|+.+.++++++.++|.+.+.+.+..+... .++..++.+..+.....+..||+.+
T Consensus       356 g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (426)
T PRK12307        356 GLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLK  414 (426)
T ss_pred             hhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhhh
Confidence            999999999999999999999888877665332 2333333333443333344566543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=2.6e-28  Score=244.87  Aligned_cols=366  Identities=22%  Similarity=0.321  Sum_probs=246.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .+++|.+++.+.+..+.|++|+...+...|.+.+|+++++++.+++.+...+|...                 +..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            47999999999999999999999999999999999999999999999988776544                 4455566


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWR  163 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR  163 (478)
                      ..++.++.++++|++.+++.|++.|++.|... ....++.|++|+++||+.+++.+.+..+|..+++.++..+.+..+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  169 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR  169 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            66777778889999999999999999888753 45678899999999999999999999999999999888777788999


Q ss_pred             HHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccc
Q 011756          164 WLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSS  242 (478)
Q Consensus       164 ~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (478)
                      +.|++.++..++. .+...++||+|++...+++.++.+                                     ..   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------------------------~~---  209 (406)
T PRK11551        170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA-------------------------------------PV---  209 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh-------------------------------------hh---
Confidence            9999887655544 445567899987532211100000                                     00   


Q ss_pred             ccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHH
Q 011756          243 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFIT  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (478)
                                    .+..++++..+.....+..++.....++....+.|.+....+           .+...........
T Consensus       210 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~  264 (406)
T PRK11551        210 --------------LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG-----------LSRSQAGLVQIAF  264 (406)
T ss_pred             --------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CChhhhhHHHHHH
Confidence                          000111111112222233333333344445555554432211           1111111223444


Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      .++.+++.++.+++.||+|||+.+..+.....+.........+.+......+...+...+..+..+.+.+|.+|++.|++
T Consensus       265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~  344 (406)
T PRK11551        265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGT  344 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhh
Confidence            56788899999999999999998776554443333333322222222222222222333445667788899999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHhc
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~  452 (478)
                      +.|+.+.++++++.++|.+.+.+.+..+.. ..+.....+.+++.+..+..
T Consensus       345 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        345 GVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887654332 23333444444444444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=2.6e-28  Score=240.39  Aligned_cols=335  Identities=18%  Similarity=0.146  Sum_probs=220.9

Q ss_pred             HHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH-hhhchHHHHHHHH
Q 011756           43 VMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS----------------ILGGALVTFVAGLLS-AFSPNYISLLILR  105 (478)
Q Consensus        43 ~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~----------------~~~~~~~~~i~~~~~-~~a~~~~~l~~~R  105 (478)
                      -...++..|.+++||++++++.|++.+.+++|+.+                +..+.+...+.+... ..++|+.+++++|
T Consensus         7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R   86 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ   86 (368)
T ss_pred             HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34567789999999999999999999998887665                222222333233222 3337999999999


Q ss_pred             HHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHH-HHHHHhcC
Q 011756          106 GLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMP  184 (478)
Q Consensus       106 ~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~-~~~~~~lp  184 (478)
                      +++|+|.|...+.....+|++|+|+|++++++.+.+..+|.++++.++..+.+++|||+.|.+.++++++. ++.++++|
T Consensus        87 ~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903        87 LLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999988654455567999999999999999999999999999999998888899999999977766554 55667899


Q ss_pred             CCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcc
Q 011756          185 ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR  264 (478)
Q Consensus       185 ESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (478)
                      |+|++..   +..+.++                                     .              .+++++++++ 
T Consensus       167 ~~p~~~~---~~~~~~~-------------------------------------~--------------~~~~~~ll~~-  191 (368)
T TIGR00903       167 ALPFQAA---EGFGFKD-------------------------------------A--------------VKEFGALAGR-  191 (368)
T ss_pred             CCCCCCC---CCcchHH-------------------------------------H--------------HHHHHHHHcC-
Confidence            9997521   0000000                                     0              0012223322 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH-
Q 011756          265 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-  343 (478)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr-  343 (478)
                        +..+..+..+++....+|+...|.|.+....+           .+ ..   ......+..+.|.+..++++||..|| 
T Consensus       192 --~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g-----------~s-~~---~~~~~~l~~~~g~~g~~~~~d~~~r~~  254 (368)
T TIGR00903       192 --KDLWIIGAILGFGVALFDNLAIWLEAALRPAG-----------LE-DI---AGDAVALAILAGLIGVAVIPDRVARAG  254 (368)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CC-hH---HHHHHHHHHHHHHHHHHHhhHHhhhhh
Confidence              22334445566667777888888887653211           11 11   11222333445556678888887653 


Q ss_pred             --HHHHH-HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHH
Q 011756          344 --LSMTI-MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPL  420 (478)
Q Consensus       344 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~  420 (478)
                        +.... ...+.++.........+......+.....++..+.++..+.+.+|.+|++.|+++.|+.+..+++++..+|.
T Consensus       255 ~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~  334 (368)
T TIGR00903       255 LRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALAL  334 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHH
Confidence              33222 222222222222222222222223333334444555667889999999999999999999999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 011756          421 VAVGLVTSCHQTAAILLLEALIVLSVVVILL  451 (478)
Q Consensus       421 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  451 (478)
                      +.+.+..  +....+.+++++.+++.+.+++
T Consensus       335 ~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~  363 (368)
T TIGR00903       335 AAMLFIS--SAEAYFTFLAILITIAFAIALL  363 (368)
T ss_pred             HHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence            8877763  4445677778888887777653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=4.7e-28  Score=242.54  Aligned_cols=366  Identities=19%  Similarity=0.297  Sum_probs=241.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHH
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGAL   83 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~   83 (478)
                      .+++|++.+..+.++++.|++|+...+...|.+++++|+++.+.+++.+...++..+                 ++.+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999988776544                 455666


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Q 011756           84 VTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT-  161 (478)
Q Consensus        84 ~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-  161 (478)
                      +..+++++.+++++++.+++.|++.|++.+... ....++.|++|+++|++..++.+.+..+|..+++.++..+.+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            777888888899999999999999999988764 556788999999999999999999999999999998887766655 


Q ss_pred             -hHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccc
Q 011756          162 -WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLL  240 (478)
Q Consensus       162 -WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (478)
                       ||+.|.+.+++.++.++....+||+|++..++++.++.++..++..+...              ..+.    ..+ .. 
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~----~~~-~~-  225 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH--------------RIAN----IVM-TL-  225 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch--------------hhhh----hhh-hh-
Confidence             99999998888777777777899998875433322222221111110000              0000    000 00 


Q ss_pred             ccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHH
Q 011756          241 SSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF  320 (478)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (478)
                                   ....+. ..++.+.................++...+.|.+....          .+.+.........
T Consensus       226 -------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~s~~~~~~~~~  281 (405)
T TIGR00891       226 -------------AAAMVQ-SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD----------LGLSPHTVANIVV  281 (405)
T ss_pred             -------------hHHhhh-hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----------hCCCHHHHHHHHH
Confidence                         000000 0011111111122221222222222222222221100          0111111112234


Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL-VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ...++.+++.++.+++.||+|||+.+..+...+.+..+.. ....+.+......+...++..+.++..+.+.+|.+|++.
T Consensus       282 ~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (405)
T TIGR00891       282 FSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ  361 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch
Confidence            4556788899999999999999998877665443322221 121222222222222223334445566788899999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  430 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~  430 (478)
                      |+++.|+.+.++++++.++|.+.+.+.+..+
T Consensus       362 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       362 RAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999998887655

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=2.3e-28  Score=249.54  Aligned_cols=403  Identities=14%  Similarity=0.132  Sum_probs=252.4

Q ss_pred             cccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-------
Q 011756            5 IQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-------   77 (478)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-------   77 (478)
                      .++|+.|+++...+..+.|+.+.++..+.+++++.+.|+..++...|.+++|+|+++++.|++.+.+++++.+       
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~   86 (467)
T PRK09556          7 VRKPTLDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGY   86 (467)
T ss_pred             cCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4567788888777767788888999999999999999999999999999999999999999999999887655       


Q ss_pred             ----------HHHHHHHHHHHHHH-----HhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHH
Q 011756           78 ----------ILGGALVTFVAGLL-----SAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF  141 (478)
Q Consensus        78 ----------~~~~~~~~~i~~~~-----~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~  141 (478)
                                +..+.++++++++.     ++.++|++.+++.|++.|++.|.. +...+++.|++|+++||+++++++.+
T Consensus        87 l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~  166 (467)
T PRK09556         87 YADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNIS  166 (467)
T ss_pred             HhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecc
Confidence                      23333444444333     344789999999999999988765 45567899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCc---chHHHHHHhhHHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCC
Q 011756          142 WTFGSVSEAALAWIVMPIL---TWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSG  217 (478)
Q Consensus       142 ~~~G~~~~~~~~~~~~~~~---~WR~~f~i~~i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  217 (478)
                      ..+|.++++.+...+....   +||..|.+.+++.++..+ .+++.+|+|+..   +..++ ++..      +..     
T Consensus       167 ~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~------~~~-----  231 (467)
T PRK09556        167 HNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIF------GEP-----  231 (467)
T ss_pred             cchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhcc------cCc-----
Confidence            9999999988876554432   699999888877766544 444567777521   11111 0000      000     


Q ss_pred             CCCCCCCCCcccccCCCCcccccccccccccccccccchhh--cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 011756          218 NLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL--MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSG  295 (478)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  295 (478)
                        ..      ++. +..++++            ......+.  .+.++.    .+...+..+.....+++...|.|.+..
T Consensus       232 --~~------~~~-~~~~~~~------------~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~p~yl~  286 (467)
T PRK09556        232 --IS------EED-KETESTD------------MTKWQIFVEYVLKNPV----IWLLCFANIFLYIVRIGIDNWSPVYAF  286 (467)
T ss_pred             --cc------hhh-hcccccc------------CcHHHHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00      000 0000000            00000001  111222    223333334444455666666664432


Q ss_pred             CCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHH--HHHHhhchhHHHHHHH
Q 011756          296 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL--LPLVTLQSNILLTALL  373 (478)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  373 (478)
                      ..          .+.+............++.++|.+++|+++||+|||+..........+..  +......+........
T Consensus       287 ~~----------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T PRK09556        287 QE----------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASL  356 (467)
T ss_pred             Hc----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            11          01111111122334556788999999999999999986654432222211  1111111222221222


Q ss_pred             HHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhH-hHhHHHHHHHHHhh------------ccchhHHHHHHHH
Q 011756          374 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVT------------SCHQTAAILLLEA  440 (478)
Q Consensus       374 ~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~l-g~~~~p~~~~~l~~------------~~~~~~~~~~~~~  440 (478)
                      +...++..++....+....|.+|++.|+++.|+.+.++++ |++++|.+.+.+.+            ..++...+.++.+
T Consensus       357 ~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~  436 (467)
T PRK09556        357 FALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDI  436 (467)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHH
Confidence            2222222333333345667999999999999999999997 66899999998888            3344556666767


Q ss_pred             HHHHHHHHHHhcc-cccc
Q 011756          441 LIVLSVVVILLIP-FETK  457 (478)
Q Consensus       441 ~~~i~~~~~~~~~-pet~  457 (478)
                      +.+++.+..++.. .|+|
T Consensus       437 ~~~~~~~~~~~~~~~~~~  454 (467)
T PRK09556        437 AAIGCICLMAIVAVMEER  454 (467)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            7777665555442 3443

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=4.6e-27  Score=234.58  Aligned_cols=377  Identities=27%  Similarity=0.399  Sum_probs=251.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH--------------
Q 011756           12 LDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS--------------   77 (478)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~--------------   77 (478)
                      +++..+....+++++..++.+.+.++.++++....++..|.+.+++|.++.+.+++.+...++..+              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~   81 (398)
T TIGR00895         2 VQNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGR   81 (398)
T ss_pred             hhhHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Confidence            345555556678888888888889999999999999999999999999999999998887665444              


Q ss_pred             ---HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011756           78 ---ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA  153 (478)
Q Consensus        78 ---~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~  153 (478)
                         +..+.++..++.++.+++++++.+++.|++.|++.|.. +...+++.|++|+++|++..++.+.+..+|..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  161 (398)
T TIGR00895        82 KRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA  161 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence               44455566677777788899999999999999998875 45667899999999999999999999999999999999


Q ss_pred             HHHhcCcchHHHHHHhhH-HHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccC
Q 011756          154 WIVMPILTWRWLLALSAI-PAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS  232 (478)
Q Consensus       154 ~~~~~~~~WR~~f~i~~i-~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (478)
                      ..+.+..+||+.|.+.++ ..+...+...++||+|++..++ +++++++..++....+..+.         +.+..+   
T Consensus       162 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~---  228 (398)
T TIGR00895       162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA---------QSALPE---  228 (398)
T ss_pred             HHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc---------cccccc---
Confidence            888888899999998864 4444455677799999987665 55555555554432221100         000000   


Q ss_pred             CCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccc
Q 011756          233 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQD  312 (478)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  312 (478)
                        +++       +++ ..+   ...+.+++++..+.....+...+.....+++...+.|.+....+           .+.
T Consensus       229 --~~~-------~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~  284 (398)
T TIGR00895       229 --QKA-------TQG-TKR---SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG-----------FSL  284 (398)
T ss_pred             --ccc-------ccc-hhh---HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCH
Confidence              000       000 000   01222334444444444444444444555555555554332111           111


Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 011756          313 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP  392 (478)
Q Consensus       313 ~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  392 (478)
                      ...........++.+++.++.+++.||+|||+.............+......+........+...++..+..+..+.+.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  364 (398)
T TIGR00895       285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMA  364 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11112234555678889999999999999995444333222222222111222222222222333333344566788999


Q ss_pred             cccCcChhHHHHHHHHHHHhHhHhHHHHHHHHH
Q 011756          393 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  425 (478)
Q Consensus       393 E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l  425 (478)
                      |.+|++.|+++.|+.+.++++|+.++|.+.+.+
T Consensus       365 ~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       365 LFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999999999999987754

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=6.1e-27  Score=236.86  Aligned_cols=370  Identities=18%  Similarity=0.237  Sum_probs=224.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHH-HHH--HHH------------HHH--------HH
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLIT-TVV--FAG------------MMS--------IL   79 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-s~~--~~G------------~~~--------~~   79 (478)
                      ..+++....+.+++++|++|+..+++..|.+++|+++++.+.+.+. +..  ..+            ...        ++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   90 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI   90 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence            3455577788899999999999999999999999999888765443 221  111            111        56


Q ss_pred             HHHHHHHHHHHHHhhhchHH--------HHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 011756           80 GGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA  150 (478)
Q Consensus        80 ~~~~~~~i~~~~~~~a~~~~--------~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~  150 (478)
                      .+.+++.++++++++++|+.        .++++|+++|++.|... ....++.|++|+++||+.+++...+..+|..+++
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            67777888888999999987        46999999999998764 4567899999999999999999988888888777


Q ss_pred             HHHHHH--------hcCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCC
Q 011756          151 ALAWIV--------MPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  222 (478)
Q Consensus       151 ~~~~~~--------~~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  222 (478)
                      .++..+        .+.+|||++|++..++..+.+..+...||++++..++++                           
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------------------------  223 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR---------------------------  223 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc---------------------------
Confidence            776654        246799999998766544444444456665433110000                           


Q ss_pred             CCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccc
Q 011756          223 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  302 (478)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  302 (478)
                            .     +.++                 .++..  .+.++.........+.....+++...|.|.+..+..    
T Consensus       224 ------~-----~~~~-----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----  269 (434)
T PRK15075        224 ------P-----SMRE-----------------IFRSL--AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVL----  269 (434)
T ss_pred             ------c-----cccc-----------------HHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence                  0     0000                 00000  011112222222223334445556666665432110    


Q ss_pred             ccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-H-Hh-hchhH-HHHHHHHHHHH
Q 011756          303 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-L-VT-LQSNI-LLTALLSGARM  378 (478)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~-~-~~-~~~~~-~~~~~~~~~~~  378 (478)
                            +.+............++.+++.+++|+++||+|||+....+........+. . .. ..+.. ..........+
T Consensus       270 ------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (434)
T PRK15075        270 ------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSF  343 (434)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence                  111111122234455667888999999999999999877654333221111 1 11 11111 11111111111


Q ss_pred             HhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhH-hHhHHHHHHHHHhhccchhH--H-HHHHHHHHHHHHHHHHhccc
Q 011756          379 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTA--A-ILLLEALIVLSVVVILLIPF  454 (478)
Q Consensus       379 ~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~l-g~~~~p~~~~~l~~~~~~~~--~-~~~~~~~~~i~~~~~~~~~p  454 (478)
                      +.....+..+.+.+|.+|++.|+++.|+.+++++. ++.++|.+.+.+.+..+...  . +.+++.  +.+ .+..+...
T Consensus       344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~--~~~-~~~~~~~~  420 (434)
T PRK15075        344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAA--VCG-LIATLVLY  420 (434)
T ss_pred             HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHH--HHH-HHHHHHhc
Confidence            11122334567889999999999999998888886 58889999888877655321  2 222222  222 23334445


Q ss_pred             cccCcccc
Q 011756          455 ETKGKELV  462 (478)
Q Consensus       455 et~g~~l~  462 (478)
                      +.+|.+++
T Consensus       421 ~~~~~~~~  428 (434)
T PRK15075        421 RRRGARLQ  428 (434)
T ss_pred             cccchhhh
Confidence            66666654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=7.8e-27  Score=236.00  Aligned_cols=388  Identities=16%  Similarity=0.160  Sum_probs=246.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .++++.++..+.++++.+.+|+...+...|.+.+++|+++++.|++.+.+.++..+                 +..+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            35666777778899999999999999999999999999999999999988777554                 5566677


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWR  163 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR  163 (478)
                      +.++.++.++++|++.+++.|++.|++.|.. +....++.|++|+++||+.+++.+.+..+|..+++.+...+.+.+|||
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            7778888889999999999999999988765 455678899999999999999999999999999999888888889999


Q ss_pred             HHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccc
Q 011756          164 WLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSS  242 (478)
Q Consensus       164 ~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (478)
                      +.|.+.+++.++. ++..+++||+|++.....+.++.                     ++.+   +     .+++.    
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---------------------~~~~---~-----~~~~~----  224 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR---------------------HDAL---E-----LAQQQ----  224 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc---------------------cccc---c-----cchhc----
Confidence            9999988776654 44556789988753111000000                     0000   0     00000    


Q ss_pred             ccccccccccccch-hh-cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHH
Q 011756          243 ARKRTTVRKSGFSS-FL-MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF  320 (478)
Q Consensus       243 ~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (478)
                       +++    +.+.++ ++ ..++.   ++.+......+.....+++...|.|.+.....          +.+.........
T Consensus       225 -~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~a~~~~~  286 (434)
T PRK11663        225 -EGA----GLSRKEILTKYVLLN---PYIWLLSFSYVLVYVVRAAINDWGNLYMSETL----------GVDLVTANSAVS  286 (434)
T ss_pred             -ccc----CCChhhhHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCHHHHHHHHH
Confidence             000    000000 00 01111   11222222233333444555555554432110          111111112233


Q ss_pred             HHHhhhhhHHHHHHHHHhhh--chH-HHHHHHHH--HHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          321 ITSFAELPGLLTAALLVDRV--GRK-LSMTIMFI--FVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~--GRr-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      ...++.++|.++.++++||+  +|| ........  ......+......+........+...++..++........+|.+
T Consensus       287 ~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  366 (434)
T PRK11663        287 MFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECS  366 (434)
T ss_pred             HHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence            44567889999999999999  333 32221111  11111111111111111111222222222233333456678999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcc
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  460 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~  460 (478)
                      |++.|+++.|+.+..+++|+.++|.+.+.+.+..+....+...+++.+++.+..+.+.++.++++
T Consensus       367 ~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  431 (434)
T PRK11663        367 HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE  431 (434)
T ss_pred             cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence            99999999999999999999999999998888766666777777777777766666665555543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=7.5e-26  Score=233.13  Aligned_cols=408  Identities=18%  Similarity=0.276  Sum_probs=245.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      ++++++.+..++++++.+++|....+...|.+.+++|+++.+.+++.+.+.+|..+                 +..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            47888888899999999999999999999999999999999999999988776544                 4556666


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWR  163 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR  163 (478)
                      ..++.++.++++|++.+++.|++.|++.+.. .....++.|.+|+++|++..+....++.+|..+++.+...+.+..+||
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            7777888889999999999999999988775 455678899999999999999999999999999999998888889999


Q ss_pred             HHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccc
Q 011756          164 WLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSA  243 (478)
Q Consensus       164 ~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (478)
                      +.|++..++.++.++.+..+||++++...+++.++.++..+...+.+.+             .. ...............
T Consensus       175 ~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~  240 (496)
T PRK03893        175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHR-------------II-NILLTLAAAAALWFC  240 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhH-------------HH-HHHHHHHHHHHHHHH
Confidence            9999877777666666777899987644322222111111111000000             00 000000000000000


Q ss_pred             ccccccccccc-------------chhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCc
Q 011756          244 RKRTTVRKSGF-------------SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  310 (478)
Q Consensus       244 ~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (478)
                      ....  .....             ..+.....++.+..........+......++...+.|.+....          .+.
T Consensus       241 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~----------~g~  308 (496)
T PRK03893        241 FAGN--LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD----------LGY  308 (496)
T ss_pred             HHhh--hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh----------cCC
Confidence            0000  00000             0000000000111111111111111111112223333332111          011


Q ss_pred             cchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-chh-HHHHHHHHHHHHHhhhhhhhhh
Q 011756          311 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSN-ILLTALLSGARMFSMGTFIIAN  388 (478)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~  388 (478)
                      +............++.++|.++.++++||+|||+.+..+..+..+..+..... ... +......+...+...+.....+
T Consensus       309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (496)
T PRK03893        309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLP  388 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhH
Confidence            11112223344556778899999999999999998776655444333222221 111 1111222222222233344566


Q ss_pred             hhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHH-HHHHHHHHHhcccc
Q 011756          389 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEAL-IVLSVVVILLIPFE  455 (478)
Q Consensus       389 ~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~-~~i~~~~~~~~~pe  455 (478)
                      .+.+|.+|.+.|+++.|+.+.++.+|+.++|.+.+.+.+..+....+...+++ .+.+.+...+..|+
T Consensus       389 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (496)
T PRK03893        389 KLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS  456 (496)
T ss_pred             HHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            78889999999999999999999999999999988887766544444443333 33333333344443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.95  E-value=1.4e-24  Score=220.70  Aligned_cols=403  Identities=14%  Similarity=0.184  Sum_probs=237.3

Q ss_pred             ccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH------------
Q 011756           10 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS------------   77 (478)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~------------   77 (478)
                      .--++.+|.. ..+++|.++..+.+++.....|+..+++..|.+.++ ++++.+.+++.+.+.++..+            
T Consensus        13 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~   90 (452)
T PRK11273         13 RLPAAEIDPT-YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS   90 (452)
T ss_pred             cCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            3334455543 456677777777788888999999899999999988 99999999999998877555            


Q ss_pred             -----HHHHHHHHHHHHHHHhhh----chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHH
Q 011756           78 -----ILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV  147 (478)
Q Consensus        78 -----~~~~~~~~~i~~~~~~~a----~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~  147 (478)
                           ++.+.+++.++.++.+++    .++..+++.|++.|++.|.. +.....+.|++|+++||+.+++++.+..+|..
T Consensus        91 g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  170 (452)
T PRK11273         91 NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG  170 (452)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhh
Confidence                 455666666666666654    37888999999999988765 34456678999999999999999999988864


Q ss_pred             H-HHHHHHHHhcCcchHHHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 011756          148 S-EAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  225 (478)
Q Consensus       148 ~-~~~~~~~~~~~~~WR~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (478)
                      + ++++...+....+||+.|++.+++.++. ++..+++||+|+....+.+ +|.+         +  +.+     ++   
T Consensus       171 ~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~---------~--~~~-----~~---  230 (452)
T PRK11273        171 LPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYK---------N--DYP-----DD---  230 (452)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhh---------h--ccc-----cc---
Confidence            4 4444333333459999999988776665 4556778999874211111 0100         0  000     00   


Q ss_pred             CcccccCCCCcccccccccccccccccccch-hh-cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccc
Q 011756          226 DLDEEFSTSEETPLLSSARKRTTVRKSGFSS-FL-MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  303 (478)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  303 (478)
                       .++   +.++              +.+..+ +. ..++.+   ..+...+..+.....+++...+.|.+.....     
T Consensus       231 -~~~---~~~~--------------~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-----  284 (452)
T PRK11273        231 -YNE---KHEQ--------------ELTAKQIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEVK-----  284 (452)
T ss_pred             -ccc---ccCC--------------CccHHHHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence             000   0000              000000 00 111111   1122222222233344555555555442211     


Q ss_pred             cccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhh--chHHHHHH-HHHHHHHHHHHHHh--hchhHHHHHHHHHHHH
Q 011756          304 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTI-MFIFVCIFLLPLVT--LQSNILLTALLSGARM  378 (478)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--GRr~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  378 (478)
                           +...........+..++.+++.+++|+++||+  |||..... ......+....+..  ..+........+....
T Consensus       285 -----g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~  359 (452)
T PRK11273        285 -----HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGF  359 (452)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence                 01111111223344567788999999999999  55543222 11111111111111  1111111121222222


Q ss_pred             HhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhH-HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh-ccccc
Q 011756          379 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV-CPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL-IPFET  456 (478)
Q Consensus       379 ~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~pet  456 (478)
                      ...++......+..|.+|++.|+++.|+.+..+++|+.+ +|.+.+.+.+..+....+.+.+++++++.+.... ..+|+
T Consensus       360 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        360 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  439 (452)
T ss_pred             HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            222333334456779999999999999999999998765 7888888887766666677777777766655553 34555


Q ss_pred             cCcccchhhcc
Q 011756          457 KGKELVNTIDG  467 (478)
Q Consensus       457 ~g~~l~~~~~~  467 (478)
                      |++  ||..++
T Consensus       440 ~~~--~~~~~~  448 (452)
T PRK11273        440 RHH--EELLQK  448 (452)
T ss_pred             chH--HHHHhh
Confidence            443  444443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=4.5e-25  Score=219.62  Aligned_cols=367  Identities=17%  Similarity=0.222  Sum_probs=227.0

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchH
Q 011756           36 WFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNY   98 (478)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~   98 (478)
                      +..+.+|+..++...|.+++++|+++.+.+++.+...++..+                 +..+.++..++.++.++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            567889999999999999999999999999999988776554                 455666777778888899999


Q ss_pred             HHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHH
Q 011756           99 ISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLL  177 (478)
Q Consensus        99 ~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~  177 (478)
                      +.++++|++.|++.|.. +....++.|+.|+++|++..++.+....+|.++++.++..+.+..+||+.|.+.++..++..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            99999999999998775 45567899999999999999999999999999999999888888899999999887776654


Q ss_pred             H-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccch
Q 011756          178 I-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS  256 (478)
Q Consensus       178 ~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (478)
                      + ...+.||+|+..  +...++.++...+       +     ...+    .++    .+++             +....+
T Consensus       163 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~-----~~~~----~~~----~~~~-------------~~~~~~  207 (399)
T TIGR00893       163 VLWLKFIPDPPQKA--KWLTEEEKYIVVG-------G-----LLAE----QQG----KGPS-------------TPKKYQ  207 (399)
T ss_pred             HHhhheecCCCCcc--ccCCHHHHhhcch-------h-----hccc----ccc----cccc-------------CCCccc
Confidence            4 344567776421  1111111100000       0     0000    000    0000             000011


Q ss_pred             hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHH
Q 011756          257 FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALL  336 (478)
Q Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l  336 (478)
                      .++.++++   +.+......+.....++....+.|.+.....          +.+............++.+++.++.+++
T Consensus       208 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (399)
T TIGR00893       208 IKELLKDR---RVWGLALGQFLVNIGLGFFLTWFPTYLVQER----------GLSILEAGFMASLPGIVGFIGMILGGRL  274 (399)
T ss_pred             hHHHhcCH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------cccHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            22222221   1122222222223333333333333221100          0111111122344456678899999999


Q ss_pred             HhhhchHH--HHHHHH-HHHH-H--HHHHHHhh-chhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHH
Q 011756          337 VDRVGRKL--SMTIMF-IFVC-I--FLLPLVTL-QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA  409 (478)
Q Consensus       337 ~dr~GRr~--~~~~~~-~~~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~  409 (478)
                      .||+|||+  ...... ...+ .  ........ .+............++..+..+..+.+.+|.+|++.|+++.|+.+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  354 (399)
T TIGR00893       275 SDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINS  354 (399)
T ss_pred             HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHH
Confidence            99999996  111111 1111 1  11111111 1111111112222222333466778999999999999999999999


Q ss_pred             HHhHhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHH
Q 011756          410 VGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVIL  450 (478)
Q Consensus       410 ~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~  450 (478)
                      +.++|+.++|.+.+.+.+..+ ....+.+.+++.+++.+..+
T Consensus       355 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       355 LGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877665 44556666666666555444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.95  E-value=1.1e-24  Score=222.44  Aligned_cols=378  Identities=15%  Similarity=0.161  Sum_probs=233.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh----------------------hcCCCcchhhHHHHHHHHHHHH-
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKS----------------------EWGLSSSEESLITTVVFAGMMS-   77 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~~~s~~~~G~~~-   77 (478)
                      .++.++.+...+.+++.+++.|+..++++.|.+++                      |+++++.+.|++.+.+.+|..+ 
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            56788888888999999999999999999887766                      7889999999999999887665 


Q ss_pred             ----------------HHHHHHHHHHHHHHHhh--hchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHH
Q 011756           78 ----------------ILGGALVTFVAGLLSAF--SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVF  138 (478)
Q Consensus        78 ----------------~~~~~~~~~i~~~~~~~--a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~  138 (478)
                                      +..+.+++++++++..+  .+++..+++.|+++|++.|... ....++.|+.|+++||+.+++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence                            44455566666665543  3568889999999999998864 5667899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHHHH-HHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCC
Q 011756          139 STFWTFGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  216 (478)
Q Consensus       139 ~~~~~~G~~~~~~~~~~~~~~-~~WR~~f~i~~i~~~l~~~~-~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  216 (478)
                      ..+..+|.+++++++..+.+. .+||+.|.+.++++++..+. ..+.||+|+..   .+.++.++  +.+.+...     
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~--~~i~~~~~-----  242 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKFEK--KYINSSLQ-----  242 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHHHH--HHHHhhcc-----
Confidence            999999999999998888777 49999999999888776554 44567888632   11111111  11110000     


Q ss_pred             CCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 011756          217 GNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGS  296 (478)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  296 (478)
                                  +..  .+.            ..+   .++++.++.+   ..+......++....++....|.|.+...
T Consensus       243 ------------~~~--~~~------------~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~  290 (465)
T TIGR00894       243 ------------GQK--GST------------RQS---LPIKAIPKSL---PVWAIWFAIFGHFWLYTILPTYLPTFISW  290 (465)
T ss_pred             ------------ccc--CCC------------CCC---CCHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        000  000            000   0122222221   22233333444444555555565544321


Q ss_pred             CCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH--------HHHH--HHHHHHHHHHHh-hch
Q 011756          297 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM--------TIMF--IFVCIFLLPLVT-LQS  365 (478)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~--------~~~~--~~~~~~~~~~~~-~~~  365 (478)
                      ..          +.+.........+..++.+++.+++|+++||++||+..        ..+.  ...++..+.... ..+
T Consensus       291 ~~----------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (465)
T TIGR00894       291 VL----------RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA  360 (465)
T ss_pred             Hh----------CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            10          01111111122344566788899999999998755211        1111  111111111111 111


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc--c-hhHHHHHHHHHH
Q 011756          366 NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--H-QTAAILLLEALI  442 (478)
Q Consensus       366 ~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~--~-~~~~~~~~~~~~  442 (478)
                      .......+....++..+.....+....|..|. .+|++.|+.+..+.++++++|.+.+.+.+..  + ....+.+.++..
T Consensus       361 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~  439 (465)
T TIGR00894       361 FYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVN  439 (465)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHH
Confidence            22222222222222222333344555677765 8999999999999999999999988776542  2 234556666666


Q ss_pred             HHHHHHHHh
Q 011756          443 VLSVVVILL  451 (478)
Q Consensus       443 ~i~~~~~~~  451 (478)
                      +++.++..+
T Consensus       440 ~i~~i~~~~  448 (465)
T TIGR00894       440 ILCVIFYLI  448 (465)
T ss_pred             HHHHHHeee
Confidence            666555444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=1.2e-23  Score=210.05  Aligned_cols=353  Identities=15%  Similarity=0.107  Sum_probs=218.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 011756           25 QGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFV   87 (478)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i   87 (478)
                      ++..++.+.++.+....+........|.+.+|+|+++.+.+++.+.+.++..+                 +..+.++..+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   86 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA   86 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            34333333333333333333455567899999999999999999988766443                 5566777788


Q ss_pred             HHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Q 011756           88 AGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLL  166 (478)
Q Consensus        88 ~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f  166 (478)
                      +++.+++++|+++++++|+++|++.+.. +...+++.|++|+++||+++++...+..+|..+++.++..+.++.|||+.|
T Consensus        87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  166 (390)
T PRK03545         87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF  166 (390)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence            8888999999999999999999888765 345678899999999999999999999999999999998888888999999


Q ss_pred             HHhhHHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccc
Q 011756          167 ALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARK  245 (478)
Q Consensus       167 ~i~~i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (478)
                      ++.++..++..+ ...++||.|+.     ++++.                                              
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~----------------------------------------------  195 (390)
T PRK03545        167 LAIGGGALITLLLLIKLLPLLPSE-----HSGSL----------------------------------------------  195 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCC-----CcchH----------------------------------------------
Confidence            999887766543 34456765420     00000                                              


Q ss_pred             cccccccccchhhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCCCCcccccccccCccchhhHHHHHHHH
Q 011756          246 RTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLA-SELSGSQSKCSSSILLSENVQDASVYINVFITS  323 (478)
Q Consensus       246 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (478)
                               ++..+.++ ++.+....    ..+.....+++...+. +.+....+           .+............
T Consensus       196 ---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~g-----------~s~~~~~~~~~~~~  251 (390)
T PRK03545        196 ---------KSLPLLFRRPALVSLYL----LTVVVVTAHFTAYSYIEPFVQQVAG-----------LSENFATLLLLLFG  251 (390)
T ss_pred             ---------HHHHHHHhCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC-----------CCccHHHHHHHHHH
Confidence                     00111111 22221111    1111111222222222 22221111           11111111223445


Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHH
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  403 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~  403 (478)
                      ++.+++.+..+++.||.|||.....................+............+...+..........|..| +.|+++
T Consensus       252 ~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~  330 (390)
T PRK03545        252 GAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVA  330 (390)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHH
Confidence            6788899999999999999876443333222222211222222222222211111111222233455667776 688999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcc
Q 011756          404 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  453 (478)
Q Consensus       404 ~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  453 (478)
                      .|+.+...++|..++|.+.+.+.+..+....+...+.+.+++.+..++..
T Consensus       331 ~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        331 MALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999888877766677777777777766666553

>PRK03699 putative transporter; Provisional

Probab=99.94  E-value=5.4e-24  Score=212.65  Aligned_cols=358  Identities=15%  Similarity=0.146  Sum_probs=232.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      +.+|+++...+.+++++++.+....+...|.+++++|+++.+.+++.+...+|..+                 ++.+.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~   81 (394)
T PRK03699          2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL   81 (394)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            35778888899999999999999999999999999999999999999988776554                 4455667


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-cCcch
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM-PILTW  162 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~W  162 (478)
                      ..++.++.++++|+..+++.|++.|++.|... ....++.|+.|+++||+..+..+....+|..+++.+...+. +..+|
T Consensus        82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            77788888899999999999999999887653 45567899999999999999988888888888888776554 45799


Q ss_pred             HHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccc
Q 011756          163 RWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSS  242 (478)
Q Consensus       163 R~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (478)
                      |+.|.+.+++.++..+..++ .+.|+.  .+.+                            +   ++.  ..+       
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~----------------------------~---~~~--~~~-------  198 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLF-SEFPAL--GKHA----------------------------P---KAD--KPV-------  198 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCccc--cccC----------------------------c---ccc--Ccc-------
Confidence            99999888777655443332 233320  0000                            0   000  000       


Q ss_pred             ccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHH
Q 011756          243 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFIT  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (478)
                        .     +       ..++    +..+......+.....+++...|.|.+..+..          +.+...........
T Consensus       199 --~-----~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~  250 (394)
T PRK03699        199 --A-----K-------EKWG----IGVLFLAIAALLYILAQLTFISWVPEYAQKKF----------GMSLEDAGNLVSNF  250 (394)
T ss_pred             --c-----c-------ccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHhhHHHHHH
Confidence              0     0       0001    12222222333333444555555554432110          01111111112233


Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      .++..+|.++.++++||++||+.+.....+..+....+....+........+...++..+.++....+..|..|. .+++
T Consensus       251 ~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~  329 (394)
T PRK03699        251 WMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPK  329 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHH
Confidence            456788999999999999999987765544443333322222222222222222233334455556667777764 4678


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  451 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  451 (478)
                      ..|.....+++|+.++|.+.+.+.+..+....++..+++..++.+....
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            8899999999999999999998887766556666666666665544333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.94  E-value=4.1e-24  Score=218.33  Aligned_cols=379  Identities=13%  Similarity=0.101  Sum_probs=225.6

Q ss_pred             ccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH------------
Q 011756           10 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS------------   77 (478)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~------------   77 (478)
                      .|.+++++...+.+.|++.+......++.+.++....+...|.+++|+|++.++.+++.+.+.+|...            
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~   98 (476)
T PLN00028         19 EHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY   98 (476)
T ss_pred             ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455667667777888888888888999999998888889999999999999999988877766543            


Q ss_pred             -----HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 011756           78 -----ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL  152 (478)
Q Consensus        78 -----~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~  152 (478)
                           +..+.+++.++.++.++++|+..++++|++.|++.+.......+++|++|+++||+++++......+|..+++.+
T Consensus        99 G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~  178 (476)
T PLN00028         99 GPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL  178 (476)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence                 344556667777788889999999999999999887644444578999999999999999887666666665544


Q ss_pred             HHHH----hc-----CcchHHHHHHhhHHHHHHHHHHHhcC-CCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCC
Q 011756          153 AWIV----MP-----ILTWRWLLALSAIPAFVLLIFIVFMP-ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  222 (478)
Q Consensus       153 ~~~~----~~-----~~~WR~~f~i~~i~~~l~~~~~~~lp-ESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  222 (478)
                      ...+    ..     ..|||+.|++.+++.++..+..++++ +.|+     ++.+|.+       + +            
T Consensus       179 ~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~-~------------  233 (476)
T PLN00028        179 MPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------K-S------------  233 (476)
T ss_pred             HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------h-c------------
Confidence            3322    11     25899999999887776655545544 3342     1100000       0 0            


Q ss_pred             CCCCcccccCCCCcccccccccccccccccccchhhcc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 011756          223 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLML-FSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  301 (478)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  301 (478)
                            .   +.++.+.              ...+++. .+++    .+..+..++......++...+.|.+....    
T Consensus       234 ------~---~~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----  282 (476)
T PLN00028        234 ------G---TMPKDSF--------------SKVLRYGVTNYR----TWILALTYGYSFGVELTMDNIIAEYFYDR----  282 (476)
T ss_pred             ------C---ccccccH--------------HHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHhHHHHHHHHh----
Confidence                  0   0000000              0011111 1122    22222222222223333333433322111    


Q ss_pred             cccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH-------HHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 011756          302 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-------SMTIMFIFVCIFLLPLVTLQSNILLTALLS  374 (478)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (478)
                            .+.+.........+..++.+++.+++|+++||++||+       .......+.++..+.+....+.........
T Consensus       283 ------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~  356 (476)
T PLN00028        283 ------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI  356 (476)
T ss_pred             ------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence                  0111112222334556778889999999999998762       222222222222222222222222221222


Q ss_pred             HHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc
Q 011756          375 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       375 ~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      ...++..+..+..+.+.+|+.| +.|+++.|+.+..+++|+.++|.+.. .-...+....+.+.+++.+++.++.++.
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            2222222333456677777755 79999999999999899988887643 1112234456777777777776665554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2.9e-23  Score=199.54  Aligned_cols=357  Identities=20%  Similarity=0.221  Sum_probs=237.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHH
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVT   85 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~   85 (478)
                      +..+..++...++.+.-+.+-+.+.-.+|++.+|+|.|..+.|+..|.+.+|..+                 ++....++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            4444444555555666677777888889999999999999999999999887665                 56677888


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Q 011756           86 FVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRW  164 (478)
Q Consensus        86 ~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~  164 (478)
                      .++.+++++++||+.++++|++.|+.-|... +......+..||++|++++++...+..++.+++.+++.++.+.+|||.
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~  168 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA  168 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence            9999999999999999999999999999874 556778999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccc
Q 011756          165 LLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSA  243 (478)
Q Consensus       165 ~f~i~~i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (478)
                      .|++.+..+++.++ .+..+|  |+-.                     ++.+            .     .+        
T Consensus       169 ~F~~ia~l~ll~~~~~~~~lP--~~~~---------------------~~~~------------~-----~~--------  200 (394)
T COG2814         169 TFLAIAVLALLALLLLWKLLP--PSEI---------------------SGSL------------P-----GP--------  200 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC--CccC---------------------CCCC------------C-----cc--------
Confidence            99999988877744 566788  3300                     0000            0     00        


Q ss_pred             cccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHH
Q 011756          244 RKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITS  323 (478)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (478)
                               ....++.+.+|+.+.......+. ....+.  .+.+..|.+.+..+           .+....-......+
T Consensus       201 ---------~~~~~~~l~~p~v~~~l~~t~l~-~~g~F~--~ftYi~P~L~~v~g-----------~s~~~vs~~Ll~~G  257 (394)
T COG2814         201 ---------LRTLLRLLRRPGVLLGLLATFLF-MTGHFA--LYTYIRPFLESVAG-----------FSVSAVSLVLLAFG  257 (394)
T ss_pred             ---------hhHHHHHhcCchHHHHHHHHHHH-Hcchhh--hHHhHHHHHHHccC-----------CCHhHHHHHHHHHH
Confidence                     00122233344444333322222 222221  22233444432211           11122223456677


Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      ++.++|.+++|.+.|| +.|+.+........+..+.+.. ..+.+......+...+.............++ .-++.+..
T Consensus       258 v~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~  335 (394)
T COG2814         258 IAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADL  335 (394)
T ss_pred             HHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHH
Confidence            8889999999999999 7777666554444433333332 2223222222222222111111223445555 44699999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      +.++....-|+|...+..+.+.++++.+.....+.-+...+.+.++....
T Consensus       336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888887655445555555555555554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.94  E-value=4.2e-23  Score=206.01  Aligned_cols=342  Identities=16%  Similarity=0.107  Sum_probs=224.1

Q ss_pred             HHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 011756           44 MILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRG  106 (478)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~  106 (478)
                      ...+...|.+++|+++++++.+++.|.+.+|..+                 +..+..++.++.+.+++++|+..+++.|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            5677889999999999999999999998887655                 67788888999999999999999999999


Q ss_pred             HhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHhhHHHHHHHHHHHhcC
Q 011756          107 LAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMP  184 (478)
Q Consensus       107 l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~WR~~f~i~~i~~~l~~~~~~~lp  184 (478)
                      ++|+|.|... ....++.|+.| ++|+++++.+..+...|..+++.++..+.++. +||+.+.+.+++.++.++.++...
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS  184 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988754 34566788887 88999999999999999999988887776664 899998777666554433332221


Q ss_pred             -CCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCc
Q 011756          185 -ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSP  263 (478)
Q Consensus       185 -ESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (478)
                       +.|+         +                   +   +           .++..                 ..+.++++
T Consensus       185 ~~~~~---------~-------------------~---~-----------~~~~~-----------------~~~~l~~~  205 (393)
T PRK09705        185 AREVA---------S-------------------S---H-----------KTTTT-----------------PVRVVFTP  205 (393)
T ss_pred             cCCCc---------c-------------------c---c-----------CCCcC-----------------CcccccCH
Confidence             1110         0                   0   0           00000                 00011122


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 011756          264 RFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK  343 (478)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr  343 (478)
                      +.+    ......+.....+++...+.|.+..+.+           .+.........+..++.++|.++.+++.||.|||
T Consensus       206 ~~~----~l~~~~~~~~~~~~~~~~~lp~~l~~~g-----------~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~  270 (393)
T PRK09705        206 RAW----TLGVYFGLINGGYASLIAWLPAFYIEIG-----------ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR  270 (393)
T ss_pred             hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            222    2222223334455566555554432211           1111111223455577888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHhhhhhhhhhhhccccc-CcChhHHHHHHHHHHHhHhHhHHHHH
Q 011756          344 LSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFIIANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLV  421 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~-p~~~R~~~~g~~~~~~~lg~~~~p~~  421 (478)
                      +.+..+..+..+....+.. ..+.....  .....+...+.++.......+.+ |++.|++..|+.+.++++++.++|.+
T Consensus       271 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~  348 (393)
T PRK09705        271 KLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWF  348 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9877765544433322221 11111111  11111111223344444555666 46889999999999999999999999


Q ss_pred             HHHHhhccch-hHHHHHHHHHHHHHHHHHHhccccccCcccc
Q 011756          422 AVGLVTSCHQ-TAAILLLEALIVLSVVVILLIPFETKGKELV  462 (478)
Q Consensus       422 ~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~  462 (478)
                      .+.+.+..+. ...+.+.+++++++.++.+.+.|||++|...
T Consensus       349 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK09705        349 SGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWV  390 (393)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhc
Confidence            9988877653 3455666667777777778889999987654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.93  E-value=4.5e-23  Score=204.12  Aligned_cols=336  Identities=18%  Similarity=0.248  Sum_probs=210.0

Q ss_pred             HHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHH
Q 011756           41 MEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLI  103 (478)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~  103 (478)
                      .+....+...|.+++|+|+++.+.+++.+.+.+|..+                 +..+.++..++.+..++++|++.+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (377)
T TIGR00890        17 GYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL   96 (377)
T ss_pred             hHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778889999999999999999999999887655                 45667777888888999999999999


Q ss_pred             HHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHH-HH
Q 011756          104 LRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IV  181 (478)
Q Consensus       104 ~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~-~~  181 (478)
                      +|++.|++.|... .......|+.| |+||++.++...+..+|.++++++...+.+..+||+.|.+.++..++..+. .+
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988653 44456778876 679999999999999998877666666666789999999988877766544 44


Q ss_pred             hcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhccc
Q 011756          182 FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF  261 (478)
Q Consensus       182 ~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (478)
                      ++||+|+-.. +                  ++   .        +.      .+++                 .+.++.+
T Consensus       176 ~~~~~~~~~~-~------------------~~---~--------~~------~~~~-----------------~~~~~~~  202 (377)
T TIGR00890       176 LIGYPPGQLI-K------------------TN---I--------EV------SVKD-----------------YTVWEML  202 (377)
T ss_pred             heecCchhcc-c------------------cC---c--------cc------chhh-----------------hhHHHHH
Confidence            4555442000 0                  00   0        00      0000                 0011112


Q ss_pred             -CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhh
Q 011756          262 -SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV  340 (478)
Q Consensus       262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~  340 (478)
                       +++.+.    .....+...+.......+.+.+....           +.+............+..+++.+..+++.||+
T Consensus       203 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  267 (377)
T TIGR00890       203 RTPQFWV----LYLSFFLNAVSGLLLIGLYKPYGQSL-----------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKI  267 (377)
T ss_pred             cCccHHH----HHHHHHHHhHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222221    11111111111111111111111110           01111111223445567788999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHH
Q 011756          341 GRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVC  418 (478)
Q Consensus       341 GRr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~  418 (478)
                      |||+.+..+..+..+..+......+  ............+...+.....+.+.+|.+|++.|+++.|+.+...++|+.++
T Consensus       268 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~  347 (377)
T TIGR00890       268 GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFG  347 (377)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHH
Confidence            9999887766555444333332221  11111111111111122234456788899999999999999999999999999


Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHH
Q 011756          419 PLVAVGLVTSCHQTAAILLLEALIVLS  445 (478)
Q Consensus       419 p~~~~~l~~~~~~~~~~~~~~~~~~i~  445 (478)
                      |.+.+.+.+..+....+.+.+++.+++
T Consensus       348 ~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       348 GLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            999888877665555555555554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.92  E-value=2.2e-22  Score=202.64  Aligned_cols=366  Identities=17%  Similarity=0.088  Sum_probs=226.9

Q ss_pred             HHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHh-----h
Q 011756           37 FSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSA-----F   94 (478)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~-----~   94 (478)
                      ++..+.........|.+.++++.++.+.|++.+...++..+                 +..+..+..++.+..+     .
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~  106 (417)
T PRK10489         27 FISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence            34444455666778888888888999999999988777554                 1122222222222221     2


Q ss_pred             hchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHH
Q 011756           95 SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPA  173 (478)
Q Consensus        95 a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~  173 (478)
                      +++++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+....+|..+++.++..+.+..+||+.|.+.++..
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~  186 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGT  186 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            578899999999999887654 3445678899999999999999999999999999999988877789999999888777


Q ss_pred             HHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccc
Q 011756          174 FVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG  253 (478)
Q Consensus       174 ~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (478)
                      ++..+..+.+||+|+..  +++.+                                     ..++.              
T Consensus       187 ~~~~~~~~~l~~~~~~~--~~~~~-------------------------------------~~~~~--------------  213 (417)
T PRK10489        187 FITLLPLLRLPALPPPP--QPREH-------------------------------------PLRSL--------------  213 (417)
T ss_pred             HHHHHHHHhCCCCCCCC--ccccc-------------------------------------chHHH--------------
Confidence            66666667788765310  00000                                     00000              


Q ss_pred             cchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHH
Q 011756          254 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTA  333 (478)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  333 (478)
                      ...++..++++..+...+.....   . ...+...+.|.+.....          +.+....-.......++.+++.++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~p~~~~~~~----------g~~~~~~g~~~~~~~~g~~ig~~~~  279 (417)
T PRK10489        214 LAGFRFLLASPVVGGIALLGGLL---T-MASAVRVLYPALADEVW----------QMGAAQIGLLYAAVPLGAALGALTS  279 (417)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHH---H-HHHhHHHhhHHHHHhcc----------CCChhHhHHHHHHHHHHHHHHHHHH
Confidence            00111222222222222111111   1 11222333333321100          0111111112234456778888999


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhH
Q 011756          334 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI  413 (478)
Q Consensus       334 ~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~l  413 (478)
                      +++.||.++|+.+..+..+.++..+.+....+........+...+......+..+.+..|..|.+.|+++.|+.+...++
T Consensus       280 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  359 (417)
T PRK10489        280 GWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT  359 (417)
T ss_pred             HHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Confidence            99999977777666655444443333332222222112222221211112234467888999999999999999999999


Q ss_pred             hHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcccchhhcccc
Q 011756          414 GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVS  469 (478)
Q Consensus       414 g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~~~~~~~~  469 (478)
                      |..++|.+.+.+.+..+....+...+++.++..++.+...||+|+++++|..+|..
T Consensus       360 g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (417)
T PRK10489        360 GDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS  415 (417)
T ss_pred             hHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence            99999999998887766556677777777766677777779999999998776654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.92  E-value=2.3e-22  Score=203.76  Aligned_cols=383  Identities=15%  Similarity=0.190  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHH
Q 011756           24 FQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTF   86 (478)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~   86 (478)
                      ..+..+..+.+++.....++....+..|.+++ +|+++++.+++.+.+.++...                 +..+.++..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            45566677778889999999999999998876 599999999999998877655                 445555666


Q ss_pred             HHHHHHhhh----chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH-HhcCc
Q 011756           87 VAGLLSAFS----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWI-VMPIL  160 (478)
Q Consensus        87 i~~~~~~~a----~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~-~~~~~  160 (478)
                      ++.++.+.+    +++..+.+.|++.|++.|.. +....++.|++|+++||+.+++.+.+..+|..+++.+... +..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence            666655543    56788899999999988875 3455678899999999999999999999998888776554 33357


Q ss_pred             chHHHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccc
Q 011756          161 TWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPL  239 (478)
Q Consensus       161 ~WR~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (478)
                      +||+.|++.++..++. ++..+++||+|+...   +++..+        .++          |...+..+   +.+.+  
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~--------~~~----------~~~~~~~~---~~~~~--  236 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAMMRDTPQSCG---LPPIEE--------YRN----------DYPDDYNE---KAEQE--  236 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC---CCCchh--------ccc----------cccccccc---ccccc--
Confidence            9999999988877665 445667899887421   110000        000          00000000   00000  


Q ss_pred             cccccccccccccccchhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHH
Q 011756          240 LSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYIN  318 (478)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  318 (478)
                           .   +.++..  .+..+ +++.+..    ....+.....+++...+.|.+.....          +.+.......
T Consensus       237 -----~---~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~  292 (438)
T TIGR00712       237 -----L---TAKEIF--MQYVLPNKLLWYI----AIANVFVYLLRYGVLDWSPTYLKEVK----------HFALDKSSWA  292 (438)
T ss_pred             -----c---chHHHH--HHHHccCchHHHH----HHHHHHHHHHHHHHHHhHHHHHHHcc----------CCChhhHHHH
Confidence                 0   000000  01112 2222211    11112222333444445544332110          0111111122


Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHH---HHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFV---CIFLLPLVTL--QSNILLTALLSGARMFSMGTFIIANIFAPE  393 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E  393 (478)
                      .....+..+++.+++++++||++||+....+....   .+..+.+...  .+........+...+...++.........|
T Consensus       293 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  372 (438)
T TIGR00712       293 YFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALE  372 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            33445667889999999999996433211222111   1111111111  111211111122212122222222346779


Q ss_pred             ccCcChhHHHHHHHHHHHhHhH-hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          394 IYPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       394 ~~p~~~R~~~~g~~~~~~~lg~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      .+|++.|+++.|+.+.++++++ .++|.+.+.+.+..+....+.++.++.+++.+..++..||.|
T Consensus       373 ~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       373 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999875 578999888887766666777777777788788888888765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.92  E-value=5.6e-23  Score=211.13  Aligned_cols=377  Identities=14%  Similarity=0.156  Sum_probs=228.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 011756           28 ALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGL   90 (478)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~   90 (478)
                      ++..+.++.+.+.+|....+...|.+.+++|.++++.+++.+.+.++..+                 ++.+.++..++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45677788999999999999999999999999999999999988776544                 5566777788888


Q ss_pred             HHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHh
Q 011756           91 LSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALS  169 (478)
Q Consensus        91 ~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~  169 (478)
                      ++++++|+..++++|+++|++.|.. +...+++.|++|+++||+..+++.....+|..+++.++..+.++.+||+.|++.
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            8999999999999999999998875 456678999999999999999999999999999999999888889999999998


Q ss_pred             hHHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHH------H-HcCCCCCCCCCCCCCCCCcccccCC-CCccccc
Q 011756          170 AIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIA------Q-FNQTSLPSGNLTSDGTNDLDEEFST-SEETPLL  240 (478)
Q Consensus       170 ~i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  240 (478)
                      ++++++..+ ..+++||+++  .++++.|.....+....      . ..+++       .+ +.+....... .......
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~  232 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPE-------RG-WFDSNEILILSITGLVAI  232 (485)
T ss_pred             hHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCC-------CC-CCCchHHHHHHHHHHHHH
Confidence            877665543 4556787654  12223332221111110      0 00000       00 0000000000 0000000


Q ss_pred             ccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHH
Q 011756          241 SSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF  320 (478)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (478)
                      .....++...+++..+.+.+.+++++...+..    +...+.+++...+.|.+....          .+.+.........
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~----------~g~s~~~~g~~~~  298 (485)
T TIGR00711       233 IAFVVWELTDDNPLVDLRLFKYRNFTIGCVYM----SLLGLGLYGSFYLLPLYLQQV----------LGYTALQAGLHIL  298 (485)
T ss_pred             HHHHHHHHcCCCCccCHHHHcCCChHHHHHHH----HHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHH
Confidence            00000000001111122223333333222222    222223333333333322110          0111111122233


Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH--hh-chh-HHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV--TL-QSN-ILLTALLSGARMFSMGTFIIANIFAPEIYP  396 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p  396 (478)
                      ...++.+++.++.+++.||+|||+.+..+....++....+.  .. ... ...........+.....+........|.+|
T Consensus       299 ~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~  378 (485)
T TIGR00711       299 PVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLP  378 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44567788999999999999999988777655544333333  11 111 111111112211111222334555668889


Q ss_pred             cChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          397 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       397 ~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      ++.|+++.|+.+.+.++|+.+++.+.+.+.+.
T Consensus       379 ~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       379 PHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.92  E-value=1.1e-21  Score=196.50  Aligned_cols=350  Identities=16%  Similarity=0.094  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHHHHHHhHHh-hhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhh
Q 011756           34 LGWFSEAMEVMILSFVGPA-VKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFS   95 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a   95 (478)
                      ...+++.++........|. +++++|+++.+.|++.+++.++..+                 +..+.+++.++++..+++
T Consensus        22 ~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~  101 (399)
T PRK05122         22 MFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLA  101 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHh
Confidence            4455666666666666665 6889999999999999998887655                 444555555544443332


Q ss_pred             --------chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Q 011756           96 --------PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLL  166 (478)
Q Consensus        96 --------~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f  166 (478)
                              .++.++++.|+++|+|.+.. +....+..|+.|+++||++.++.+.+...|.++++.++..+.+..|||+.+
T Consensus       102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~  181 (399)
T PRK05122        102 GLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLG  181 (399)
T ss_pred             hhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence                    25778999999999998875 345677889999999999999999999999999999998888889999998


Q ss_pred             HHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccc
Q 011756          167 ALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKR  246 (478)
Q Consensus       167 ~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (478)
                      .+..+.+++..+.....||+++   +++                                        ++.         
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~---~~~----------------------------------------~~~---------  209 (399)
T PRK05122        182 LLIMLLALLGLLLARPRPAVPP---VKG----------------------------------------ERL---------  209 (399)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCC---CCc----------------------------------------cch---------
Confidence            8776655444333322333211   000                                        000         


Q ss_pred             ccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhh
Q 011756          247 TTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAE  326 (478)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (478)
                               +.++.++ +.++......    ...+.+.....+.+.+....+           .....  .......++.
T Consensus       210 ---------~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~  262 (399)
T PRK05122        210 ---------PFRRVLG-RVWPYGMGLA----LASIGFGTIATFITLYYAARG-----------WDGAA--LALTLFGVAF  262 (399)
T ss_pred             ---------hHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcc-----------cccch--HHHHHHHHHH
Confidence                     0000000 1111111111    111112222222222111111           00111  1122344566


Q ss_pred             hhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHH
Q 011756          327 LPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGV  406 (478)
Q Consensus       327 ~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~  406 (478)
                      +++.+..+++.||+|||+.+..+.....+.........+.+..........+.....++.......|..|.+.|+++.|+
T Consensus       263 ~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  342 (399)
T PRK05122        263 VGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGA  342 (399)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            77889999999999999987766555444433333333322222222222222223334445666789999999999999


Q ss_pred             HHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcccch
Q 011756          407 AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  463 (478)
Q Consensus       407 ~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~~  463 (478)
                      .+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+..+++ ++.++|+.+|
T Consensus       343 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  398 (399)
T PRK05122        343 YSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-YRRAPRAVPE  398 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-cccccccCCC
Confidence            9999999998888888888776666666767777777766555554 5566666554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=9.3e-22  Score=202.18  Aligned_cols=379  Identities=14%  Similarity=0.092  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 011756           25 QGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFV   87 (478)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i   87 (478)
                      ++.+++.++++.+....|...++...|.+.+|+|.+.++.+|+.+.+.++...                 ++.+.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45678888899999999999999999999999999999999999998876544                 5667778888


Q ss_pred             HHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Q 011756           88 AGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEF-VPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWL  165 (478)
Q Consensus        88 ~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~-~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~  165 (478)
                      +++.+++++|+++++++|+++|+|.|... .....+.+. .|+++|++..+++.....+|..++|.++..+.++.+|||.
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~  163 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV  163 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence            99999999999999999999999887653 334445454 5789999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHH------HHHHHcCCCCCCCCCCCCCCCCcccccCC-CCcc
Q 011756          166 LALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILD------KIAQFNQTSLPSGNLTSDGTNDLDEEFST-SEET  237 (478)
Q Consensus       166 f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  237 (478)
                      |++.....++. ++..+++||+|+-  ++++.|.....+.      .........  ..     .... ...... .-..
T Consensus       164 f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~--~~-----~~~~-~~~~~~~~~~~  233 (495)
T PRK14995        164 FLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTAL--KG-----FLSL-WVTSLTLLTGA  233 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhcc--cc-----CCch-HHHHHHHHHHH
Confidence            99887655554 3455668887642  1112222111110      000000000  00     0000 000000 0000


Q ss_pred             cccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHH
Q 011756          238 PLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYI  317 (478)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (478)
                      ........++...+.+..+.+.++++......    ...+.....+++...+.|......          .+.+....-.
T Consensus       234 ~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lq~v----------~g~s~~~ag~  299 (495)
T PRK14995        234 LLLGLFIRTQLAASRPMIDMRLFTHRIILSGV----VMAMTAMITLVGFELLMAQELQFV----------HGLSPLEAGM  299 (495)
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHhCCcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHH
Confidence            00000000000111222233322223222111    112222223333333333221100          0111111112


Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          318 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       318 ~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      ......++..++..+.|++.||+|||+.+..+..+.++....+...   .+.+..........+..............+.
T Consensus       300 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~  379 (495)
T PRK14995        300 FMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAA  379 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            2233445667788999999999999998777665544333222221   1122112122222221222233456666788


Q ss_pred             cCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                      .|.+.++.+.++.+...++|+.+++.+.+.+.+
T Consensus       380 ~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        380 APPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             CCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888776654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.92  E-value=4.3e-22  Score=198.31  Aligned_cols=330  Identities=20%  Similarity=0.258  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhcC--CCcchhhHHHHHHH--HHHH-------H-------------HHHHHHHHHHHHHH
Q 011756           36 WFSEAMEVMILSFVGPAVKSEWG--LSSSEESLITTVVF--AGMM-------S-------------ILGGALVTFVAGLL   91 (478)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~s~~~--~G~~-------~-------------~~~~~~~~~i~~~~   91 (478)
                      .+.|++|++..++..+.+.+++.  .++++.+.+.+...  .+..       +             +..+.++..++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            35799999999999999888764  45566666554322  1111       1             45566777788888


Q ss_pred             HhhhchHH--------HHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-----
Q 011756           92 SAFSPNYI--------SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM-----  157 (478)
Q Consensus        92 ~~~a~~~~--------~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-----  157 (478)
                      .++++++.        .+++.|+++|++.|.. +....++.|+.|+++|++..+..+.+..+|.++++.++..+.     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            88888875        4899999999998875 455678999999999999999999999999999888765442     


Q ss_pred             ---cCcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCC
Q 011756          158 ---PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTS  234 (478)
Q Consensus       158 ---~~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (478)
                         +.++||+.|.+.++..++..+....+||+|++..++++.                +        +            
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~--------~------------  205 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH----------------K--------K------------  205 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc----------------c--------c------------
Confidence               357999999998877776666667788887642111000                0        0            


Q ss_pred             CcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchh
Q 011756          235 EETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS  314 (478)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (478)
                      +..                  +.++.++++. +.........+.....++....+.|.+.....          +.+...
T Consensus       206 ~~~------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~  256 (394)
T TIGR00883       206 KRG------------------PIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQTL----------GLSANS  256 (394)
T ss_pred             ccC------------------CHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChhH
Confidence            000                  0011111111 11222222223333334444334443321100          011111


Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHH--HHHHhh--chhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011756          315 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL--LPLVTL--QSNILLTALLSGARMFSMGTFIIANIF  390 (478)
Q Consensus       315 ~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~  390 (478)
                      .........+...++.++.+++.||+|||+.+..+..+.....  ......  .+............+.....++..+.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  336 (394)
T TIGR00883       257 ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSF  336 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            1122344456678888899999999999997664433332221  111111  111222222222222222344567889


Q ss_pred             cccccCcChhHHHHHHHHHHH-hHhHhHHHHHHHHHhhccc
Q 011756          391 APEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCH  430 (478)
Q Consensus       391 ~~E~~p~~~R~~~~g~~~~~~-~lg~~~~p~~~~~l~~~~~  430 (478)
                      .+|.+|++.|+++.|+.+.++ .+|+.++|.+.+.+.+..+
T Consensus       337 ~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       337 LPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            999999999999999876665 4678899999888877655

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10504 putative transporter; Provisional

Probab=99.91  E-value=1.1e-20  Score=193.51  Aligned_cols=376  Identities=14%  Similarity=0.124  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Q 011756           29 LAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLL   91 (478)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~   91 (478)
                      +..+.++.+++.+|...++...|.+.+|+|.++.+.+++.+.+.++..+                 ++.+..+..++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   91 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF   91 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            4456678899999999999999999999999999999998887766443                 34455566667777


Q ss_pred             HhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhh
Q 011756           92 SAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSA  170 (478)
Q Consensus        92 ~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~  170 (478)
                      ++++++++.+++.|+++|++.|.. +...+++.|+.|+++|++..++......+|..+++.++..+.++.+||+.|.+..
T Consensus        92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~  171 (471)
T PRK10504         92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI  171 (471)
T ss_pred             HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence            788999999999999999998875 4556678999999999999999999999999999999988888899999999877


Q ss_pred             HHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHH------HHcCCCCCCCCCCCCCCCCcccccCCCC-ccccccc
Q 011756          171 IPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIA------QFNQTSLPSGNLTSDGTNDLDEEFSTSE-ETPLLSS  242 (478)
Q Consensus       171 i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  242 (478)
                      ....+..+ .....||++.   ++.|.|.+........      ..++.+.       ...... ....... .......
T Consensus       172 ~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~  240 (471)
T PRK10504        172 PVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKG-------LGLSPL-AIAGLVAVGVVALLL  240 (471)
T ss_pred             HHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCc-------CCcchH-HHHHHHHHHHHHHHH
Confidence            65554433 3444565542   2233333322211110      0000000       000000 0000000 0000000


Q ss_pred             ccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHH
Q 011756          243 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFIT  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (478)
                      ...++...+++..+.+.+.+++++.......+........++...++.....              +.+...........
T Consensus       241 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------g~~~~~~g~~~~~~  306 (471)
T PRK10504        241 YLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGL--------------GFSPFHAGLMMIPM  306 (471)
T ss_pred             HHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------CCCHHHHHHHHHHH
Confidence            0000000001111222223343332222122222222111111122111100              01111111122333


Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-chhH-H-HHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNI-L-LTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      .++.+++..+.+.+.||+|||+.+..+..+..+....+... ...+ . ...............++..+....+..|.+.
T Consensus       307 ~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  386 (471)
T PRK10504        307 VLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL  386 (471)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh
Confidence            44456666888999999999998877665444433322221 1111 1 1111111111122234456677788999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhcc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  429 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~  429 (478)
                      |+++.|+.+...++|..++|.+.+.+++..
T Consensus       387 ~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        387 ASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999888776543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.91  E-value=2.3e-22  Score=199.24  Aligned_cols=347  Identities=16%  Similarity=0.239  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhc
Q 011756           34 LGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSP   96 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~   96 (478)
                      .+++...+|+...++..|.+++++|+++++.+++.+...++..+                 +..+.++..++.++.++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            45678889999999999999999999999999999998776555                 5666777788888888999


Q ss_pred             hHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHhcCcchHHHHHHhhHHHH
Q 011756           97 NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA-ALAWIVMPILTWRWLLALSAIPAF  174 (478)
Q Consensus        97 ~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~WR~~f~i~~i~~~  174 (478)
                      +++.+++.|++.|++.|.. +...+++.|+.|+++|++..++.+.+..+|..+++ .++..+.+..+||+.|++.++..+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            9999999999999998875 45667899999999999999999999999999999 466666677899999998876665


Q ss_pred             HH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccc
Q 011756          175 VL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG  253 (478)
Q Consensus       175 l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (478)
                      +. ++..++.||+|+...   +.++              +   ++. .+   +.++..+ .++        ++....+  
T Consensus       162 ~~~~~~~~~~~~~~~~~~---~~~~--------------~---~~~-~~---~~~~~~~-~~~--------~~~~~~~--  206 (379)
T TIGR00881       162 IVSLICFLLLRDSPQSCG---LPPA--------------E---EMP-NE---EPDGDAE-KKE--------EELTKKQ--  206 (379)
T ss_pred             HHHHHHheeeCCCccccc---cCcc--------------c---cCc-cc---ccccccc-ccc--------ccccchH--
Confidence            54 445566788775211   0000              0   000 00   0000000 000        0000000  


Q ss_pred             cchhhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHH
Q 011756          254 FSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLT  332 (478)
Q Consensus       254 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  332 (478)
                       ...+.+++ +..+    ...+..+......++...+.|.+....          .+.+............++.+++.++
T Consensus       207 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~  271 (379)
T TIGR00881       207 -IFLQYVLLNKVLW----YISLGYVFVYVVRTGILDWSPLYLTQE----------KGFSKEKASWAFTLYELGGLVGTLL  271 (379)
T ss_pred             -HHHHHHHhcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHcchhHHH
Confidence             01112222 2222    111222222222223333333222110          0111111122234455677889999


Q ss_pred             HHHHHhhhch-HH-HHHHHHHH-HHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHH
Q 011756          333 AALLVDRVGR-KL-SMTIMFIF-VCIFLLPLVT--LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVA  407 (478)
Q Consensus       333 ~~~l~dr~GR-r~-~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~  407 (478)
                      .+++.||.++ |+ ........ ..........  ..+........+...++..++....+.+.+|.+|++.|+++.|+.
T Consensus       272 ~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  351 (379)
T TIGR00881       272 AGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFV  351 (379)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHH
Confidence            9999998643 33 22221111 1111111111  111111112222222223344445567889999999999999999


Q ss_pred             HHHHhHhHhHHHHHHHHHhhccc
Q 011756          408 YAVGRIGGMVCPLVAVGLVTSCH  430 (478)
Q Consensus       408 ~~~~~lg~~~~p~~~~~l~~~~~  430 (478)
                      +.++++++.++|.+.+.+.+..+
T Consensus       352 ~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       352 GFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             HHhhhhhhhhhhhhHHHHHHhhc
Confidence            99999999999999888876544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.91  E-value=4.5e-20  Score=184.14  Aligned_cols=166  Identities=20%  Similarity=0.190  Sum_probs=128.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .|.+|+.++.+.++......+.+...-..|.+.+|+|.++.+.++..+.+.++..+                 ++.+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~   94 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL   94 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            35577655555444444444443443447889999999999999998887665444                 4566677


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWR  163 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR  163 (478)
                      ..++.++.++++|++.+++.|+++|++.|.. +...+++.|++|+|+|+++.+....+.++|.++++.++..+.+.+|||
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~  174 (394)
T PRK10213         95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR  174 (394)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence            7778888888999999999999999998876 455678899999999999999999999999999999999988889999


Q ss_pred             HHHHHhhHHHHHHHH-HHHhcCCCc
Q 011756          164 WLLALSAIPAFVLLI-FIVFMPESP  187 (478)
Q Consensus       164 ~~f~i~~i~~~l~~~-~~~~lpESP  187 (478)
                      +.|++.++.+++..+ ....+||+|
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999998776665433 334467754

>PRK12382 putative transporter; Provisional

Probab=99.90  E-value=2e-20  Score=186.79  Aligned_cols=340  Identities=19%  Similarity=0.110  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHHHHhHHh-hhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHH---HH
Q 011756           34 LGWFSEAMEVMILSFVGPA-VKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGL---LS   92 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~---~~   92 (478)
                      ++.+.+...........|. +++|+|++..+.|++.+++.++..+                 ++.+.+...++++   +.
T Consensus        22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~  101 (392)
T PRK12382         22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLA  101 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhh
Confidence            3444444443333344443 6789999999999999998876555                 3333333333322   22


Q ss_pred             h-----hhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Q 011756           93 A-----FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLL  166 (478)
Q Consensus        93 ~-----~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f  166 (478)
                      +     ..+|++.++++|+++|++.+.. +...++..|+.|+|+|+++++..+.+...|..+++.++..+.+..|||+.+
T Consensus       102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~  181 (392)
T PRK12382        102 AILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALA  181 (392)
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            2     2368899999999999988765 344567889999999999999999999999999999988887888999987


Q ss_pred             HHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccc
Q 011756          167 ALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKR  246 (478)
Q Consensus       167 ~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (478)
                      .+..+..++.+......||+|..   +                            +            ++.+.       
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~---~----------------------------~------------~~~~~-------  211 (392)
T PRK12382        182 LTTMVLPLLAWAFNGTVRKVPAH---A----------------------------G------------ERPSL-------  211 (392)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCC---c----------------------------c------------cCchH-------
Confidence            76655444333333333332210   0                            0            00000       


Q ss_pred             ccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhh
Q 011756          247 TTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAE  326 (478)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (478)
                          +   +..+     ..++........    ...+.....+.+.+....+           .....  .......++.
T Consensus       212 ----~---~~~~-----~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~  262 (392)
T PRK12382        212 ----W---SVVG-----LIWKPGLGLALQ----GVGFAVIGTFVSLYFASKG-----------WAMAG--FTLTAFGGAF  262 (392)
T ss_pred             ----H---HHHH-----HHHHhHHHHHHH----HHHHhHHHHHHHHHHHhcC-----------CchhH--HHHHHHHHHH
Confidence                0   0000     011111111111    1111112122221111110           01111  1122344556


Q ss_pred             hhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHH
Q 011756          327 LPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGV  406 (478)
Q Consensus       327 ~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~  406 (478)
                      +++.+..+++.||+|||+.+..+..+..+.........+............+.....++.......|.+|++.|+++.|+
T Consensus       263 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  342 (392)
T PRK12382        263 VLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGG  342 (392)
T ss_pred             HHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            77889999999999999887766554444333333322222221111121111112234455677889999999999999


Q ss_pred             HHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc
Q 011756          407 AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       407 ~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      .+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+..+++
T Consensus       343 ~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        343 YAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999988877666667777777777766665544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=4.5e-20  Score=182.94  Aligned_cols=341  Identities=17%  Similarity=0.126  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHhHHh-hhhhcCCCcchhhHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHhhhch
Q 011756           37 FSEAMEVMILSFVGPA-VKSEWGLSSSEESLITTVVFAGMMS-----------------I-LGGALVTFVAGLLSAFSPN   97 (478)
Q Consensus        37 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~-~~~~~~~~i~~~~~~~a~~   97 (478)
                      ++..+.........|. +++++|.++.+.|++.+...++...                 + ..+.+...++.++.++++|
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   86 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN   86 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch
Confidence            3344444444444454 6788999999999998887553222                 2 2334444556677788999


Q ss_pred             HHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhH--HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHH
Q 011756           98 YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKW--MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAF  174 (478)
Q Consensus        98 ~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~  174 (478)
                      ++.+++.|++.|.+.+.. +....+..|+.|+++|++.  .+....+..+|.++++.++..+.+..+||+.|++.+++.+
T Consensus        87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~  166 (375)
T TIGR00899        87 YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFV  166 (375)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHH
Confidence            999999999998766544 3445667898888877754  5777778889999999998888888899999999988776


Q ss_pred             HHHHH-HHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccc
Q 011756          175 VLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG  253 (478)
Q Consensus       175 l~~~~-~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (478)
                      +..+. .+++||+|++...+                            +.    +     .+                  
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~----------------------------~~----~-----~~------------------  191 (375)
T TIGR00899       167 LCGVLVWLFLPSYPRGAPGA----------------------------LT----R-----LE------------------  191 (375)
T ss_pred             HHHHHHHHhCCCcccCcccc----------------------------cC----c-----ch------------------
Confidence            66444 45589987521000                            00    0     00                  


Q ss_pred             cchhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCcccccccccCccchhhHHHHHHHHhhhhhHHH
Q 011756          254 FSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELS-GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLL  331 (478)
Q Consensus       254 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  331 (478)
                         .++.+ +++.+.........+......    ..+.|.+. ...+           .+...............+++.+
T Consensus       192 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g-----------~~~~~~g~~~~~~~~~~~~~~~  253 (375)
T TIGR00899       192 ---VRGLLASRDTRLLFVACTLMWGCNILY----IINMPLLIIHELG-----------LPDKLAGLMMGTAAGLEIPFML  253 (375)
T ss_pred             ---hhhhhcCcchHHHHHHHHHHHHHHHHH----HhhhHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHH
Confidence               00011 122221111111112111111    11111111 0000           1111111111222344567788


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHH
Q 011756          332 TAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVG  411 (478)
Q Consensus       332 ~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~  411 (478)
                      ..+++.||+|||+.+..+.....+.........+.+..........+......+....+..|..|.+ |+++.|+.+...
T Consensus       254 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  332 (375)
T TIGR00899       254 LAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTG  332 (375)
T ss_pred             hHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHH
Confidence            8999999999999877665544333322222222222222222222222223345567788988865 569999999999


Q ss_pred             hHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 011756          412 RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  451 (478)
Q Consensus       412 ~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  451 (478)
                      ++|+.++|.+.+.+.+..+....+.+.+++.+++.+...+
T Consensus       333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       333 RVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            9999999999888877665555666666666666555433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=2.8e-20  Score=182.12  Aligned_cols=328  Identities=27%  Similarity=0.384  Sum_probs=231.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHh
Q 011756           31 YSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSA   93 (478)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~   93 (478)
                      .+.++.+.+.++....+...|.+.++++.++.+.+++.+...++..+                 +..+.....++.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34466778888888889999999999999999999998888766444                 4556666777777778


Q ss_pred             hhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHH
Q 011756           94 FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIP  172 (478)
Q Consensus        94 ~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~  172 (478)
                      +++++..+++.|++.|++.+.. +...+++.|+.|+|+|++..++.+....+|..+++.++..+.+..+||+.+.+.+++
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL  162 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8899999999999999998875 455678999999999999999999999999999999999888888999999998887


Q ss_pred             HHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccccccccc
Q 011756          173 AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKS  252 (478)
Q Consensus       173 ~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (478)
                      .++..+...++|  |+                                                                
T Consensus       163 ~~~~~~~~~~~~--~~----------------------------------------------------------------  176 (352)
T cd06174         163 GLLLALLLLFLL--RL----------------------------------------------------------------  176 (352)
T ss_pred             HHHHHHHHHHHH--HH----------------------------------------------------------------
Confidence            776655554443  00                                                                


Q ss_pred             ccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHH
Q 011756          253 GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLT  332 (478)
Q Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  332 (478)
                                      .+......+.....+.....+.+.+....          .+.++...........++.+++.+.
T Consensus       177 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~  230 (352)
T cd06174         177 ----------------LLLLALAFFLLSFGYYGLLTYLPLYLQEV----------LGLSAAEAGLLLSLFGLGGILGALL  230 (352)
T ss_pred             ----------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                            00011111111111222222222221110          0111122222344556778889999


Q ss_pred             HHHHHhhhchHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHH
Q 011756          333 AALLVDRVGRKL-SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVG  411 (478)
Q Consensus       333 ~~~l~dr~GRr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~  411 (478)
                      .+++.||+|||+ .+..+..+..+.........+.+..........+.....++....+..|..|++.|++..|+.+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (352)
T cd06174         231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFG  310 (352)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            999999999999 8777766555544444333322222222223333333445677889999999999999999999999


Q ss_pred             hHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 011756          412 RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  450 (478)
Q Consensus       412 ~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  450 (478)
                      ++++.++|.+.+.+.+..+....+.+.+++.+++.+..+
T Consensus       311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            999999999998887666666667777777776655544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.90  E-value=4.4e-20  Score=183.78  Aligned_cols=351  Identities=15%  Similarity=0.146  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhh-hcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 011756           26 GLALAYSGLGWFSEAMEVMILSFVGPAVKS-EWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFV   87 (478)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i   87 (478)
                      ++.+....++.......-+..+...+.+.+ |+++|++|.+++.++..++..+                 +..+.+++++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            345666777788888888889998888766 8999999999999987665433                 4556666777


Q ss_pred             HHHHHhhh-----chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH-----H
Q 011756           88 AGLLSAFS-----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWI-----V  156 (478)
Q Consensus        88 ~~~~~~~a-----~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~-----~  156 (478)
                      .++..+++     +|+.++++.|++.|++ |.. .+....+++++|+++||++.++.....++|..+++.+.-.     +
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            77778876     8999999999999997 444 4556779999999999999999965555666544433321     1


Q ss_pred             h-------------cCcchHHHHHHhhHHHHHHHHHHHh-cCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCC
Q 011756          157 M-------------PILTWRWLLALSAIPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  222 (478)
Q Consensus       157 ~-------------~~~~WR~~f~i~~i~~~l~~~~~~~-lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  222 (478)
                      .             +..+||...++-.++.++..+..++ +++.|.   .|.+.+|                        
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~~~------------------------  244 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASIAD------------------------  244 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCHHH------------------------
Confidence            1             1345888887777766655444433 433221   0000000                        


Q ss_pred             CCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCccc
Q 011756          223 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  302 (478)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  302 (478)
                                                       ....+++|+    ++++..++++....|.+...+.|.+....     
T Consensus       245 ---------------------------------~~~vlk~~~----~Wllslly~~tFG~fvg~s~~lp~~~~~~-----  282 (462)
T PRK15034        245 ---------------------------------QLPVLQRLH----LWLLSLLYLATFGSFIGFSAGFAMLAKTQ-----  282 (462)
T ss_pred             ---------------------------------HHHHhCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence                                             011122232    23333444444334444444444433110     


Q ss_pred             ccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH--hhch---hHHHHHHHHHHH
Q 011756          303 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV--TLQS---NILLTALLSGAR  377 (478)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~  377 (478)
                             .+.........+..+...+...++|+++||+|||+++.++.....++.....  ...+   ........+...
T Consensus       283 -------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l  355 (462)
T PRK15034        283 -------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGL  355 (462)
T ss_pred             -------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence                   1111222223444566677788999999999999988877654444332211  1111   111111112222


Q ss_pred             HHhhh-hhhhhhhhcccccCc---------------------ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHH
Q 011756          378 MFSMG-TFIIANIFAPEIYPT---------------------SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAA  434 (478)
Q Consensus       378 ~~~~g-~~~~~~~~~~E~~p~---------------------~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~  434 (478)
                      +...| .++..+-+++..||.                     +.-|...|+....|.+|+++-|.+++...+..+ ....
T Consensus       356 ~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~  435 (462)
T PRK15034        356 FLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGA  435 (462)
T ss_pred             HHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHH
Confidence            22222 244567777788874                     146788999999999999999988887776654 3456


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q 011756          435 ILLLEALIVLSVVVILLIP  453 (478)
Q Consensus       435 ~~~~~~~~~i~~~~~~~~~  453 (478)
                      +..+.+..+++.++.+.+.
T Consensus       436 ~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        436 MKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            7777777777777777653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=4.1e-20  Score=183.93  Aligned_cols=344  Identities=13%  Similarity=0.095  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhh
Q 011756           33 GLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFS   95 (478)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a   95 (478)
                      .++.+..+..........|.+++|+|.+..+.|++.+...+|..+                 +..+.+++.++.++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~   88 (382)
T PRK10091          9 ALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS   88 (382)
T ss_pred             HHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence            344555666666777788999999999999999999998877655                 556677778888889999


Q ss_pred             chHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHH
Q 011756           96 PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAF  174 (478)
Q Consensus        96 ~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~  174 (478)
                      +|++.+++.|++.|++.|... ....++.|+.|+++|++.++....+..+|..+++.++..+.+..+||+.|.+.++..+
T Consensus        89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~  168 (382)
T PRK10091         89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNI  168 (382)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHH
Confidence            999999999999999988753 4455678999999999999999999999999999998888788899999999887666


Q ss_pred             HHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccc
Q 011756          175 VLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG  253 (478)
Q Consensus       175 l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (478)
                      +..+ .++++||.++    +.+. +.                                    +                 
T Consensus       169 ~~~~~~~~~lp~~~~----~~~~-~~------------------------------------~-----------------  190 (382)
T PRK10091        169 AVLASIYFWVPDIRD----EAKG-GL------------------------------------R-----------------  190 (382)
T ss_pred             HHHHHHHHhCCCCCc----cccc-CH------------------------------------H-----------------
Confidence            5543 4556787542    0000 00                                    0                 


Q ss_pred             cchhhcccCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHH
Q 011756          254 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLT  332 (478)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  332 (478)
                       ..++.+++++.+.    .....+.....++... ...+.+....           +.+............++.+++.++
T Consensus       191 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~~~~~~~~~~~~~ig~~~  254 (382)
T PRK10091        191 -EQFHFLRSPAPWL----IFAATMFGNAGVFAWFSYIKPYMMFIS-----------GFSETSMTFIMMLVGLGMVLGNLL  254 (382)
T ss_pred             -HHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHhHH
Confidence             0001111122111    1111111111111111 1112221110           111111122234555678889999


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHhhhhhhh-hhhhcccccCcChhHHHHHHHHHH
Q 011756          333 AALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFII-ANIFAPEIYPTSMRSTGAGVAYAV  410 (478)
Q Consensus       333 ~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~E~~p~~~R~~~~g~~~~~  410 (478)
                      .+++.||+|||+.+..+..+..+..+.+.. ....+......+.......+.... ......+..|.+.++.+.  .+..
T Consensus       255 ~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  332 (382)
T PRK10091        255 SGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIA  332 (382)
T ss_pred             HheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHH
Confidence            999999999999877665544433322222 222222111111111111111221 223444555656665553  4667


Q ss_pred             HhHhHhHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHhc
Q 011756          411 GRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       411 ~~lg~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      .++|+.++|.+.+.+.+.. +....+...+..+++.......+
T Consensus       333 ~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        333 FNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            7899999999998887753 33344544444444444344444

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.89  E-value=8.4e-21  Score=192.92  Aligned_cols=377  Identities=12%  Similarity=0.082  Sum_probs=219.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      |.|+|.++..+.++......++..++...|.+.+++|++.++.+++.+.+.++..+                 ++.+.++
T Consensus        14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   93 (455)
T TIGR00892        14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL   93 (455)
T ss_pred             CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence            56788888888888888888888888999999999999999999998887654332                 4556667


Q ss_pred             HHHHHHHHhhhchHHHHHH-HHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 011756           85 TFVAGLLSAFSPNYISLLI-LRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW  162 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~-~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W  162 (478)
                      ..++.++++++++++.+++ .|++.|++.|.. .+...++.|++| ++|+++.++.+.+..+|..+++.+...+.+.+||
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw  172 (455)
T TIGR00892        94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW  172 (455)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence            7777888889999998875 579999998864 444566778886 7899999999999999999999988888888899


Q ss_pred             HHHHHHhhHHHHHHHHHHHh-cCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccc
Q 011756          163 RWLLALSAIPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLS  241 (478)
Q Consensus       163 R~~f~i~~i~~~l~~~~~~~-lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (478)
                      |+.|++.++..++..+..++ .|+.++..  +.+.++ +         ++.       ..+.    ..  ++.+...   
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~-~---------~~~-------~~~~----~~--~~~~~~~---  224 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKSKS-K---------EGL-------PPDG----ST--KKLSKKS---  224 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccccc-c---------ccC-------CCCC----cc--ccccccc---
Confidence            99999998776655443333 33322110  000000 0         000       0000    00  0000000   


Q ss_pred             cccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHH
Q 011756          242 SARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFI  321 (478)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (478)
                        ..+   ...+..+++.+.+++++.    .....+...+.++....+.+.+....+           .+....-....+
T Consensus       225 --~~~---~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~~~g-----------~s~~~~g~~~~~  284 (455)
T TIGR00892       225 --TAE---KINRFLDFSLFTHRGFLV----YLSGNVIMFLGFFAPIIFLVPYAKDKG-----------VDEYEAAFLLSI  284 (455)
T ss_pred             --hhh---hhhhhcchHHhcCchHHH----HHHHHHHHHHHccchHHHHHHHHHHcC-----------CCHHHHHHHHHH
Confidence              000   000011122222233321    111112222233333333332221111           111111122334


Q ss_pred             HHhhhhhHHHHHHHHHhhh--chHHHHHH--HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          322 TSFAELPGLLTAALLVDRV--GRKLSMTI--MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~--GRr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      ..++.+++.++++++.||.  ++|+....  +....++..+......+.+..........+......+..+....|.+|.
T Consensus       285 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~  364 (455)
T TIGR00892       285 IGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA  364 (455)
T ss_pred             HHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH
Confidence            4566677788889999973  33433222  2222222222222222222222212222222223344567788899999


Q ss_pred             ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH
Q 011756          398 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVV  447 (478)
Q Consensus       398 ~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~  447 (478)
                      +.|+++.|+.+....+|++++|.+.+.+.+..+ ....+.+.+++.+++.+
T Consensus       365 ~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       365 QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999887776543 33445554444444433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.89  E-value=2.7e-19  Score=178.00  Aligned_cols=151  Identities=16%  Similarity=0.266  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHH
Q 011756           37 FSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYI   99 (478)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~   99 (478)
                      +.............|.+++|+|+++++.+++.+.+.+|..+                 +..+.++..++.+..++++++.
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~   94 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE   94 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence            45556666666778999999999999999999998876554                 4556666777778888899999


Q ss_pred             HHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH
Q 011756          100 SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI  178 (478)
Q Consensus       100 ~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~  178 (478)
                      .+++.|++.|++.+.. +...+++.|+.|+++|++..+..+....+|..+++.++..+.++.+||+.|++.++..++..+
T Consensus        95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (385)
T TIGR00710        95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA  174 (385)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            9999999999998875 455678899999999999999999999999999999998888888999999988776665543


Q ss_pred             -HHHhcCCCc
Q 011756          179 -FIVFMPESP  187 (478)
Q Consensus       179 -~~~~lpESP  187 (478)
                       ..++.||++
T Consensus       175 ~~~~~~~~~~  184 (385)
T TIGR00710       175 LIFFILPETL  184 (385)
T ss_pred             HHHHhCCCCC
Confidence             445577764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.6e-21  Score=194.12  Aligned_cols=352  Identities=17%  Similarity=0.236  Sum_probs=216.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPA-VKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      |-.+.++.+.+..++....|+..++...-. ++.|.++..++.+.+.+++++|+++                 +....+.
T Consensus        41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~  120 (495)
T KOG2533|consen   41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL  120 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH
Confidence            344456666777788888888766654322 5678889999999999999999877                 4455666


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH------h
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV------M  157 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~------~  157 (478)
                      +++.+++++...|++.+++.|++.|+..++.. ....++.-|..+++||+.++++..+.++|.+++++++..+      .
T Consensus       121 w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~  200 (495)
T KOG2533|consen  121 WGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG  200 (495)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence            77777777889999999999999999998874 4566789999999999999999999999999999999885      3


Q ss_pred             cCcchHHHHHHhhHHHHHH-HHHHHhcCCCch--hhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCC
Q 011756          158 PILTWRWLLALSAIPAFVL-LIFIVFMPESPR--YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTS  234 (478)
Q Consensus       158 ~~~~WR~~f~i~~i~~~l~-~~~~~~lpESP~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (478)
                      ...||||+|.+.++..++. ++..+++|+.|.  |..++++.+-+   .++.++.+.++                    .
T Consensus       201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~~~--------------------~  257 (495)
T KOG2533|consen  201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLRESPSGG--------------------I  257 (495)
T ss_pred             CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHHhccCCC--------------------c
Confidence            4579999999999877776 456778999998  43332221111   11221111000                    0


Q ss_pred             Ccccccccccccccccccccchhhcc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccch
Q 011756          235 EETPLLSSARKRTTVRKSGFSSFLML-FSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA  313 (478)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (478)
                      +++              .+..++++. +.++    ++...+..++.....|+...|.|.+.....          +.+..
T Consensus       258 ~~~--------------~~~~~~~~a~~dp~----vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~----------~~s~~  309 (495)
T KOG2533|consen  258 ENK--------------FKWKGFKEALKDPG----VWPFSLCYFFLKLVNYGFSYWLPLYLKSNG----------GYSEL  309 (495)
T ss_pred             ccc--------------cCHHHHHHHHhchh----HHHHHHHHHHHhhccccHHHHHHHHHHcCC----------CcChH
Confidence            000              001122222 2233    333444455555556666666666543211          01111


Q ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHhh----hchHHHHHHHHHHHHHHH-HHHHhhchhHHHHHHHHHHHHHhhhhhhhhh
Q 011756          314 SVYINVFITSFAELPGLLTAALLVDR----VGRKLSMTIMFIFVCIFL-LPLVTLQSNILLTALLSGARMFSMGTFIIAN  388 (478)
Q Consensus       314 ~~~~~~~~~~~~~~~g~~~~~~l~dr----~GRr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  388 (478)
                      ......+...++++++.+++++++||    ..+|........+..... ..+.................+.......+..
T Consensus       310 ~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (495)
T KOG2533|consen  310 QANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIAL  389 (495)
T ss_pred             HhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHH
Confidence            11122344567788899999999999    455555444333222222 1111111122122212222222223344566


Q ss_pred             hhcccccCcChhHHHHHHHHHHH-hHhHhHHHHHHHHH
Q 011756          389 IFAPEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGL  425 (478)
Q Consensus       389 ~~~~E~~p~~~R~~~~g~~~~~~-~lg~~~~p~~~~~l  425 (478)
                      .+.++....+.|......++..+ ..+++++|.+....
T Consensus       390 ~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~  427 (495)
T KOG2533|consen  390 SWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSL  427 (495)
T ss_pred             hhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccc
Confidence            77777777777666655555554 45677777665433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.89  E-value=4.9e-20  Score=181.62  Aligned_cols=330  Identities=14%  Similarity=0.096  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhc-
Q 011756           35 GWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSP-   96 (478)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~-   96 (478)
                      +.+...+.........|....|++.++.+.+++.+...++..+                 ++.+.++..++.++.++++ 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   86 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL   86 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666667778888888999999999999988776544                 3444555556666666666 


Q ss_pred             ----hHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhH
Q 011756           97 ----NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI  171 (478)
Q Consensus        97 ----~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i  171 (478)
                          |++.+++.|++.|++.+.. +...+++.|+.|+++|++..++.+....+|.++++.++..+.+..+||+.|++.++
T Consensus        87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~  166 (365)
T TIGR00900        87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV  166 (365)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                9999999999999988875 45567899999999999999999999999999999999888888899999998887


Q ss_pred             HHHHHHHHHHhc--CCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccc
Q 011756          172 PAFVLLIFIVFM--PESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV  249 (478)
Q Consensus       172 ~~~l~~~~~~~l--pESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (478)
                      ..++..+..+.+  ||+++.    ++. +                            .       +++.. +   +    
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~----~~~-~----------------------------~-------~~~~~-~---~----  198 (365)
T TIGR00900       167 GFAISALLIVSVRIPELAAS----EIQ-A----------------------------L-------SNAVL-R---D----  198 (365)
T ss_pred             HHHHHHHHHHhcccccCCCc----ccc-c----------------------------c-------chhHH-H---H----
Confidence            666554433332  332210    000 0                            0       00000 0   0    


Q ss_pred             cccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhh
Q 011756          250 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELP  328 (478)
Q Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (478)
                         ..+.++.+++++..+........   ....+++.. .+.|.+....          .+.+............++.++
T Consensus       199 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  262 (365)
T TIGR00900       199 ---TREGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPYVQSKY----------LGRGSTHYGWVLAAFGLGALL  262 (365)
T ss_pred             ---HHhHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH----------hCCchHHHHHHHHHHHHHHHH
Confidence               00112223333222222211111   111111111 2222221100          001111111223344566788


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHH
Q 011756          329 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVA  407 (478)
Q Consensus       329 g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~  407 (478)
                      +.++.+++.||.|||+.+..+....++.........+ .+......+...+......+....+..|..|++.|+++.|+.
T Consensus       263 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (365)
T TIGR00900       263 GALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQ  342 (365)
T ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            8899999999999999877765544444333333222 222222222222222233455678889999999999999999


Q ss_pred             HHHHhHhHhHHHHHHHHHhhc
Q 011756          408 YAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       408 ~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      +.+.++++.++|.+.+.+.+.
T Consensus       343 ~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       343 FSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988877654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=2.8e-19  Score=179.42  Aligned_cols=167  Identities=19%  Similarity=0.144  Sum_probs=134.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      ++..+...+.+.++.+...++...+....|.+.+|+++++.+.++..+.+.++...                 +..+..+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            45555666677777788888887778888899999999999999999888776544                 4456666


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWR  163 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR  163 (478)
                      ..++.+..+++++++.+++.|++.|++.+.. +...+++.|..|+++|++..++......+|..+++.++..+.++.+||
T Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~  167 (406)
T PRK15402         88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR  167 (406)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            7777778888999999999999999988765 455677899999999999999988888888899999888877788999


Q ss_pred             HHHHHhhHHHHHHHH-HHHhcCCCch
Q 011756          164 WLLALSAIPAFVLLI-FIVFMPESPR  188 (478)
Q Consensus       164 ~~f~i~~i~~~l~~~-~~~~lpESP~  188 (478)
                      +.|++.++..++..+ ....+||+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        168 GMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            999988877666544 3445777653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=1.5e-20  Score=184.37  Aligned_cols=325  Identities=26%  Similarity=0.380  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHHHHHHhHH-hhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhh
Q 011756           34 LGWFSEAMEVMILSFVGP-AVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFS   95 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a   95 (478)
                      ++.+++.++........| .+.+++|.++++.+++.+...++..+                 +..+.++..++.++..++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence            556778888888888888 89999999999999999988776444                 455566666665555566


Q ss_pred             chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHH
Q 011756           96 PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAF  174 (478)
Q Consensus        96 ~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~  174 (478)
                      +|++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|.++++.++..+.+..+||+.|++.++..+
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~  162 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL  162 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence            88889999999999998765 45667899999999999999999999999999999999988888899999999998887


Q ss_pred             HHHHH-HHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccc
Q 011756          175 VLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG  253 (478)
Q Consensus       175 l~~~~-~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (478)
                      +..+. ..+++|+|+....+.+                           .+++       .++              +++
T Consensus       163 ~~~il~~~~~~~~~~~~~~~~~---------------------------~~~~-------~~~--------------~~~  194 (352)
T PF07690_consen  163 IAAILFILFLPEPPPPRERESP---------------------------KESE-------SKK--------------PKP  194 (352)
T ss_dssp             HHHHHHHCCC---STTTT--SS---------------------------TTTT---------H--------------HHC
T ss_pred             hhhhhHhhhhhhcccccccccc---------------------------cccc-------ccc--------------ccc
Confidence            77553 3556655431100000                           0000       000              000


Q ss_pred             cch-hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCcc-chhhHHHHHHHHhhhhhHHH
Q 011756          254 FSS-FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ-DASVYINVFITSFAELPGLL  331 (478)
Q Consensus       254 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~  331 (478)
                      ..+ ++.+++++...   ......+...+.++....+.|.+....          .+.+ .........+..+..+++.+
T Consensus       195 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  261 (352)
T PF07690_consen  195 LKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEV----------LGFSGPSQAGLLFSIFGIVGIIGSL  261 (352)
T ss_dssp             CCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHH----------HHCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhc----------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            111 22222222111   122222222333333444444321100          0111 11111223444566677788


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHH
Q 011756          332 TAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY  408 (478)
Q Consensus       332 ~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~  408 (478)
                      +.+++.||+|+|+..........+..+....   ..+............+.....++....+..|..|++.|+++.|+.+
T Consensus       262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  341 (352)
T PF07690_consen  262 LAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFN  341 (352)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999999877655544333332222221   1112222222222222233345667889999999999999999999


Q ss_pred             HHHhHhHhHHH
Q 011756          409 AVGRIGGMVCP  419 (478)
Q Consensus       409 ~~~~lg~~~~p  419 (478)
                      ..+++++.++|
T Consensus       342 ~~~~~~~~igP  352 (352)
T PF07690_consen  342 SIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC
Confidence            99999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00897 2A0118 polyol permease family

Probab=99.88  E-value=1e-18  Score=175.10  Aligned_cols=365  Identities=15%  Similarity=0.125  Sum_probs=204.7

Q ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------H
Q 011756           16 LTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------I   78 (478)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~   78 (478)
                      ++++|+.|.-....+...+..+.++...   ++..| +.+|+|+++.+.|++.+.+.++..+                 +
T Consensus         6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l   81 (402)
T TIGR00897         6 LQKIGIPLNLLWGYIGVVVFMTGDGLEQ---GWLSP-FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM   81 (402)
T ss_pred             HHHcCCCchhhHHHHHHHHHHHhhhhHH---HhHHH-HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            4556665555554444433333344333   33334 4478899999999999988776444                 3


Q ss_pred             HHHHHHHHHHHHHH---hh-hchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHH-HHHHHH
Q 011756           79 LGGALVTFVAGLLS---AF-SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS-VSEAAL  152 (478)
Q Consensus        79 ~~~~~~~~i~~~~~---~~-a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~  152 (478)
                      ..+..+..+++++.   ++ .+|+..+++.|++.|+|.+.. +....++.|..|+++||+++++.+.+..+|. ++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~  161 (402)
T TIGR00897        82 MIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY  161 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555554433   23 368889999999999987664 3445677899999999999999999999996 578888


Q ss_pred             HHHHhcCcchHHHHHHhhHHHHHHH-HHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccccc
Q 011756          153 AWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  231 (478)
Q Consensus       153 ~~~~~~~~~WR~~f~i~~i~~~l~~-~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (478)
                      +..+.+..||+..++.......+.. +..+..+|.|+       +++                      ++      ++ 
T Consensus       162 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------------~~------~~-  205 (402)
T TIGR00897       162 SSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT-------PQH----------------------MQ------TR-  205 (402)
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC-------ccc----------------------cc------CC-
Confidence            8777777886655444332222222 22223333211       000                      00      00 


Q ss_pred             CCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCcc
Q 011756          232 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ  311 (478)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (478)
                        .+.++.           +   +..+.+++.+   +.+......+.+...+++...+.|.+.+..+           .+
T Consensus       206 --~~~~~~-----------~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s  255 (402)
T TIGR00897       206 --EKFSEL-----------G---KAATILFTNP---NVLLGGMVRIINTIGLFGFAVFLPMFVAELG-----------FS  255 (402)
T ss_pred             --cchhhH-----------H---HHHHHHHcCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CC
Confidence              000000           0   0111222221   1122222333344455555555554432211           11


Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHH---h--hchhHHHHHHHHHHHHHhhhhhh
Q 011756          312 DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLV---T--LQSNILLTALLSGARMFSMGTFI  385 (478)
Q Consensus       312 ~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~-~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~g~~~  385 (478)
                      ............++.+++.+..++++||+|||+.... +.....+....+.   .  ..+............++..+ ..
T Consensus       256 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~  334 (402)
T TIGR00897       256 TSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG-YV  334 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH-HH
Confidence            1111112234456788899999999999999886532 2222222111111   1  11111111111112121112 22


Q ss_pred             hhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc
Q 011756          386 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       386 ~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      .......|..| +.|+++.|+.+...++++.++|.+.+.+.+..+....+.+.+++.+++.+...|.
T Consensus       335 ~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       335 PLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            23344567655 6899999999999999999999999988887776667777777777776666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.88  E-value=4.7e-19  Score=177.81  Aligned_cols=352  Identities=15%  Similarity=0.136  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhcCCCcchh-----hHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Q 011756           34 LGWFSEAMEVMILSFVGPAVKSEWGLSSSEE-----SLITTVVFAGMMS-----------------ILGGALVTFVAGLL   91 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~   91 (478)
                      ++.+..++.........|.+.+++|++..+.     |++.+...++..+                 ++.+.+...++.++
T Consensus        21 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  100 (408)
T PRK09874         21 LGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL  100 (408)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence            4455566666666677888888899886653     6666665544333                 44455556666677


Q ss_pred             HhhhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhH
Q 011756           92 SAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI  171 (478)
Q Consensus        92 ~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i  171 (478)
                      .++++|++.+++.|++.|++.+..+....++.|..|+++||+..+....+..+|.++++.++..+.+..+||+.|++.++
T Consensus       101 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  180 (408)
T PRK09874        101 MGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS  180 (408)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            77889999999999999987554444556788999999999999999999999999999999888888899999998887


Q ss_pred             HHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccccccc
Q 011756          172 PAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVR  250 (478)
Q Consensus       172 ~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (478)
                      ..++..+ ..+++||+++-.   .+.++ .                                  +.              
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~----------------------------------~~--------------  208 (408)
T PRK09874        181 VLFLCFLVTLFCIRENFQPV---SKKEM-L----------------------------------HM--------------  208 (408)
T ss_pred             HHHHHHHHHHHHhccCcccc---cchhh-h----------------------------------HH--------------
Confidence            6665543 445566654210   00000 0                                  00              


Q ss_pred             ccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchh--hHHHHHHHHhhhhh
Q 011756          251 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS--VYINVFITSFAELP  328 (478)
Q Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  328 (478)
                      +   .....+.+++.+..........   .........+.+.+.....         .......  ......+..++.+.
T Consensus       209 ~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~l~~~~  273 (408)
T PRK09874        209 R---EVVTSLKNPKLVLSLFVTTLII---QVATGSIAPILTLYVRELA---------GNVSNIAFISGMIASVPGVAALL  273 (408)
T ss_pred             H---HHHHhCcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh---------ccchHHHHHHHHHHHHHHHHHHH
Confidence            0   0001111222222111111111   0111011111111100000         0000000  00111223455566


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHH
Q 011756          329 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY  408 (478)
Q Consensus       329 g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~  408 (478)
                      +....+++.||+|||+.+..+.....+..+......+.+..........+......+.......+..|.+.|++..|+.+
T Consensus       274 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  353 (408)
T PRK09874        274 SAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ  353 (408)
T ss_pred             HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence            77788899999999998877665554433333332222222222122222222223444556678889999999999999


Q ss_pred             HHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc
Q 011756          409 AVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       409 ~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      .+..+|..++|.+.+.+.+..+....+.+.+++.+++.+..++.
T Consensus       354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888776666667777777777766665554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.88  E-value=1.4e-18  Score=177.93  Aligned_cols=351  Identities=17%  Similarity=0.114  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHH-------HHHHH--------------HHHHHHHHHHHHHHHhh
Q 011756           36 WFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVF-------AGMMS--------------ILGGALVTFVAGLLSAF   94 (478)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~-------~G~~~--------------~~~~~~~~~i~~~~~~~   94 (478)
                      .+..+......+...|...++.|.+.++.+.......       +|-..              +..+.+...++..+.++
T Consensus        21 ~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~  100 (491)
T PRK11010         21 GFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            3567777778888888888888999888887622211       12111              23344444444445555


Q ss_pred             h---chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHh
Q 011756           95 S---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-ILTWRWLLALS  169 (478)
Q Consensus        95 a---~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~WR~~f~i~  169 (478)
                      .   ++++.+.+.|++.|++.+.. ....++..|++|+++||+..++...++.+|.++++.++..+.+ ..|||..|++.
T Consensus       101 ~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~  180 (491)
T PRK11010        101 LEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM  180 (491)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence            4   47888999999999877654 4556789999999999999999999999999999998888877 57999999999


Q ss_pred             hHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccc
Q 011756          170 AIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV  249 (478)
Q Consensus       170 ~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (478)
                      ++..++..+..+++||+|+..    +.++.                                  .+ ++           
T Consensus       181 a~l~ll~~l~~~~~~e~~~~~----~~~~~----------------------------------~~-~~-----------  210 (491)
T PRK11010        181 AALLIPCIIATLLAPEPTDTI----PVPKT----------------------------------LE-QA-----------  210 (491)
T ss_pred             HHHHHHHHHHHHhcCCCcccc----ccccc----------------------------------hh-hh-----------
Confidence            887777666666788876420    00000                                  00 00           


Q ss_pred             cccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhCCCCCcccccccccCccchhhHHH-HHHHHhhhh
Q 011756          250 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLL-ASELSGSQSKCSSSILLSENVQDASVYIN-VFITSFAEL  327 (478)
Q Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  327 (478)
                         ...+++++++++...........+   ....+....+ .+.+....           +.+....-.. .....++.+
T Consensus       211 ---~~~~l~~~~~~~~~~~~ll~~~l~---~~~~~~~~~~~~~~l~~~~-----------G~s~~~~g~~~~~~g~i~~i  273 (491)
T PRK11010        211 ---VVAPLRDFFGRNNAWLILLLIVLY---KLGDAFAMSLTTTFLIRGV-----------GFDAGEVGLVNKTLGLLATI  273 (491)
T ss_pred             ---HHHHHHHHHcCcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHH
Confidence               000122233222111111111111   1111111111 22221111           1111111111 123345778


Q ss_pred             hHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH---HHhhchhH-HHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHH
Q 011756          328 PGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP---LVTLQSNI-LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  403 (478)
Q Consensus       328 ~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~  403 (478)
                      +|.+++++++||+|||+.+..+.....+..+.   .....++. ......+...+......+..+.+..++.|.+.+++.
T Consensus       274 iG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~  353 (491)
T PRK11010        274 VGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQ  353 (491)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence            99999999999999988766544433322211   11211121 111111111111111224457778899999999999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcc
Q 011756          404 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  453 (478)
Q Consensus       404 ~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  453 (478)
                      .|+.+....+|+.+++.+.+.+.+..+....|.+.+++++.+.+..+++.
T Consensus       354 ~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        354 FALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888876665667777777777766666553

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.88  E-value=1.3e-18  Score=173.79  Aligned_cols=347  Identities=13%  Similarity=0.118  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHHHhH-HhhhhhcCCCcchhhHHHHHH-HHHHHH-----------------HHHHHHHHHHHHHHHhhhc
Q 011756           36 WFSEAMEVMILSFVG-PAVKSEWGLSSSEESLITTVV-FAGMMS-----------------ILGGALVTFVAGLLSAFSP   96 (478)
Q Consensus        36 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~s~~-~~G~~~-----------------~~~~~~~~~i~~~~~~~a~   96 (478)
                      .+++..-........ +.+++|+++++++.|++.+.. ..+...                 +..+.+...++..+.++++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  103 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNR  103 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444434433 446889999999999987654 334322                 2233444455566677889


Q ss_pred             hHHHHHHHHHHh-hcccCchhhHHHHHhhccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHH
Q 011756           97 NYISLLILRGLA-GAGLGSGHVFFSWFMEFVPPSNR--GKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPA  173 (478)
Q Consensus        97 ~~~~l~~~R~l~-Gig~g~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~  173 (478)
                      +++++++.|.+. |.+....+....+..|+.|+++|  +...+..+.+.++|.+++++++..+.++.|||..|++.++..
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~  183 (393)
T PRK15011        104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAF  183 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence            998876655544 44433234445566777777666  455688888999999999999998888889999999988766


Q ss_pred             HHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccccccccc
Q 011756          174 FVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKS  252 (478)
Q Consensus       174 ~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (478)
                      ++..+ ..+++||+|+-   +++  +                         +    +     +.+..     +     ++
T Consensus       184 ~~~~~~~~~~~~~~~~~---~~~--~-------------------------~----~-----~~~~~-----~-----~~  214 (393)
T PRK15011        184 IVCGVMVWLFLPSMRKE---LPL--A-------------------------T----G-----TLEAP-----R-----RN  214 (393)
T ss_pred             HHHHHHHHhhcCccCCC---Ccc--c-------------------------c----c-----ccccc-----c-----cc
Confidence            65543 45567887530   000  0                         0    0     00000     0     00


Q ss_pred             ccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHH
Q 011756          253 GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLT  332 (478)
Q Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  332 (478)
                               ++..+.........+    ..++....+.|.+....          .+.+.............+.+++.++
T Consensus       215 ---------~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~----------~~~~~~~~g~~~~~~~~~~i~~~~~  271 (393)
T PRK15011        215 ---------RRDTLLLFVICTLMW----GTNSLYIINMPLFIINE----------LHLPEKLAGVMMGTAAGLEIPTMLI  271 (393)
T ss_pred             ---------cccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                     000111111111111    11122222233221100          0011111111122333456778899


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHh
Q 011756          333 AALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR  412 (478)
Q Consensus       333 ~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~  412 (478)
                      .++++||+|||+.+..+.....+.........+.+..........+......+..+.+..|.+|.+ |+++.++.+...+
T Consensus       272 ~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~  350 (393)
T PRK15011        272 AGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSR  350 (393)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHH
Confidence            999999999999776554433332222222222222111111111111111233456678999865 9999999999999


Q ss_pred             HhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          413 IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       413 lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      +|+.++|.+.+.+.+..+....+.+.+++.+++.+..++ .||+
T Consensus       351 lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  393 (393)
T PRK15011        351 VGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR-IKDV  393 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence            999999999888777655545555555565665544444 3553

>PRK11043 putative transporter; Provisional

Probab=99.87  E-value=3.5e-18  Score=171.23  Aligned_cols=310  Identities=12%  Similarity=0.171  Sum_probs=189.7

Q ss_pred             HHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 011756           45 ILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGL  107 (478)
Q Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l  107 (478)
                      ......|.+++++++++++.+++.+++.+|..+                 +..+..+..++.++.+++++++.+++.|++
T Consensus        24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  103 (401)
T PRK11043         24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFV  103 (401)
T ss_pred             HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            334456778899999999999999998877555                 455566667777788889999999999999


Q ss_pred             hhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhcCCC
Q 011756          108 AGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPES  186 (478)
Q Consensus       108 ~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpES  186 (478)
                      .|++.+... ....++.|+.|+++|++..+.......+|..+++.++..+.++.+||+.|++.++..++..+..++++|+
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999877653 3456788999999999999888888888999999998888888899999999888777666555666665


Q ss_pred             chhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhccc-Ccch
Q 011756          187 PRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRF  265 (478)
Q Consensus       187 P~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~  265 (478)
                      ++.    .+.++.+                                                      .+.++.+ ++++
T Consensus       184 ~~~----~~~~~~~------------------------------------------------------~~~~~~~~~~~~  205 (401)
T PRK11043        184 KKA----RKQSQDA------------------------------------------------------LTFKQLLKSKTY  205 (401)
T ss_pred             CCc----cccchHH------------------------------------------------------HHHHHHHcChhH
Confidence            420    0000000                                                      0111111 2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 011756          266 FKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLS  345 (478)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~  345 (478)
                      +.....    .......++....+.|.+....+           .+....-.......++.++|.+..+++.||+|||+.
T Consensus       206 ~~~~~~----~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~  270 (401)
T PRK11043        206 LGNVLI----FAACSAAFFAWLTGSPFILEQMG-----------YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL  270 (401)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHhHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            221111    11111222223333333221111           111111111223345567788888999999999986


Q ss_pred             HHHHHHHHHHHHH---HHHhh-chhHH-HHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHH
Q 011756          346 MTIMFIFVCIFLL---PLVTL-QSNIL-LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPL  420 (478)
Q Consensus       346 ~~~~~~~~~~~~~---~~~~~-~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~  420 (478)
                      .........+...   ..... .+... .........+.....++.......|..| +.|+++.|+.+.++..++..++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~  349 (401)
T PRK11043        271 LPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASL  349 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHH
Confidence            5443332222211   11111 11111 1111111112222233444555567776 57999999999999988889888


Q ss_pred             HHHHHhhc
Q 011756          421 VAVGLVTS  428 (478)
Q Consensus       421 ~~~~l~~~  428 (478)
                      +.+.+.+.
T Consensus       350 ~~g~l~~~  357 (401)
T PRK11043        350 LVSALIST  357 (401)
T ss_pred             HHHHccCC
Confidence            88877654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=2.7e-18  Score=171.43  Aligned_cols=141  Identities=21%  Similarity=0.290  Sum_probs=115.7

Q ss_pred             HHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhh
Q 011756           47 SFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAG  109 (478)
Q Consensus        47 ~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G  109 (478)
                      ....|.+.+++|.++.+.++..+.+.+|...                 +..+.+...++.++...++|+..+++.|++.|
T Consensus        23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  102 (392)
T PRK10473         23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG  102 (392)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3568999999999999999998888766444                 45566666777778888999999999999999


Q ss_pred             cccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH-HHHhcCCCc
Q 011756          110 AGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESP  187 (478)
Q Consensus       110 ig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~-~~~~lpESP  187 (478)
                      ++.+... ....++.|..|+++|++..+..+....+|..+++.++..+.+..+||+.|++.++..++..+ ..+++||++
T Consensus       103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9888753 45678899999999999999999999999999999988877778999999998876665533 455677764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.86  E-value=3.2e-18  Score=170.26  Aligned_cols=336  Identities=16%  Similarity=0.131  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhh
Q 011756           32 SGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAF   94 (478)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~   94 (478)
                      ..++.++...+........|.+.+|+|.++.+.|++.+.+.+|..+                 +..+.++..++.++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~   90 (381)
T PRK03633         11 LLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL   90 (381)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3366778889988999999999999999999999999999887555                 45566666777778888


Q ss_pred             hchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHH
Q 011756           95 SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPA  173 (478)
Q Consensus        95 a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~  173 (478)
                      ++|++.+++.|+++|++.|... .....+.|..|+++||+..+.+..+..+|..+++.++..+.+...|+..+....+..
T Consensus        91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  170 (381)
T PRK03633         91 MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLA  170 (381)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            9999999999999999988753 444567788999999999999999999999999999887655433333222211111


Q ss_pred             HHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccc
Q 011756          174 FVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG  253 (478)
Q Consensus       174 ~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (478)
                      .+..+.....||+++                                 + +    +     +.+                
T Consensus       171 ~~~~~~~~~~~~~~~---------------------------------~-~----~-----~~~----------------  191 (381)
T PRK03633        171 AILPLLFTRILNQQA---------------------------------E-N----H-----DST----------------  191 (381)
T ss_pred             HHHHHHHhcccCCCC---------------------------------C-C----C-----CCC----------------
Confidence            111111111111100                                 0 0    0     000                


Q ss_pred             cchhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHH
Q 011756          254 FSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLT  332 (478)
Q Consensus       254 ~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  332 (478)
                        +..+ +.+++.+.. ....+..   ...+.....+.|.+....+           .+............++.+++.+.
T Consensus       192 --~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~lp~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~~~~  254 (381)
T PRK03633        192 --SIWPMLKLRQARLG-VNGCIIS---GIVLGSLYGLMPLYLNHQG-----------MSDASIGFWMALLVSAGILGQWP  254 (381)
T ss_pred             --CHHHHHHhcchHHH-HHHHHHH---HHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHhh
Confidence              0001 112222211 1111111   1111111122232221111           11111111223444667888999


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHh
Q 011756          333 AALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR  412 (478)
Q Consensus       333 ~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~  412 (478)
                      .+++.||+|||+.+..+.....+...... .. ........ ..........+....+..|..|.+.++...+..+....
T Consensus       255 ~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~-l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (381)
T PRK03633        255 IGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAMAPALF-ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYT  331 (381)
T ss_pred             hHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHH-HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            99999999999987766544433222221 11 11111111 11111223345667778899998888888888777788


Q ss_pred             HhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 011756          413 IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  446 (478)
Q Consensus       413 lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  446 (478)
                      +|+.++|.+.+.+.+..+....+.+.+++.++..
T Consensus       332 lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        332 VGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            9999999999988877665566666666655544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.3e-21  Score=185.69  Aligned_cols=167  Identities=25%  Similarity=0.316  Sum_probs=145.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      ++..++.+++.++.-+.+.+|+..+..+.+.++..||+++++.|++++.+.++.++                 +..+..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            45555666677788899999999999999999999999999999999998877655                 5668889


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-h
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT-W  162 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-W  162 (478)
                      |.++++.+++++.|+++.++|.+.|+|++.. +++.+.+++.+|..+|+++.++++...++|..+|.+++..+.+..+ |
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence            9999999999999999999999999999886 5678899999999999999999999999999998888877766555 9


Q ss_pred             HHHHHHhhHHHHHH-HHHHHhcCCCch
Q 011756          163 RWLLALSAIPAFVL-LIFIVFMPESPR  188 (478)
Q Consensus       163 R~~f~i~~i~~~l~-~~~~~~lpESP~  188 (478)
                      ||.|...++.++++ ++.+++.+|.+|
T Consensus       188 r~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhhccCccc
Confidence            99999999888877 445667788754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=7e-19  Score=167.49  Aligned_cols=359  Identities=19%  Similarity=0.211  Sum_probs=225.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHH-HHHHH----------------HHHHHHHH
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVF-AGMMS----------------ILGGALVT   85 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~-~G~~~----------------~~~~~~~~   85 (478)
                      +-|.+.+....+......+--+..+...+.+++|+++|+.|.+++.+... .|...                ...+.++.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            34445555555555555556677788889999999999999999988853 34333                44555565


Q ss_pred             HHHHHHHhhhch---HHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Q 011756           86 FVAGLLSAFSPN---YISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT-  161 (478)
Q Consensus        86 ~i~~~~~~~a~~---~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-  161 (478)
                      .+-.+..+++.+   ++++++++.+.|++-|...+..++.++++||+++|.++++.. .-++|..+...++-.+....+ 
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~  168 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF  168 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence            666666666654   459999999999987777777778999999999999999999 666777766666555544556 


Q ss_pred             --hHHHHHHhhHHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccc
Q 011756          162 --WRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETP  238 (478)
Q Consensus       162 --WR~~f~i~~i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (478)
                        ||....+-.++.++..+ .++.+.|.|+...++++.+                               .         
T Consensus       169 ~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~-------------------------------~---------  208 (417)
T COG2223         169 LAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL-------------------------------P---------  208 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc-------------------------------h---------
Confidence              99988887777776544 4555666655310000000                               0         


Q ss_pred             ccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHH
Q 011756          239 LLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYIN  318 (478)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  318 (478)
                                      .+++..++   .+.++.+.+.++...-.+-++..+.|.+...+.          ..+....-..
T Consensus       209 ----------------~~~~~v~~---~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f----------g~~~~~Ag~~  259 (417)
T COG2223         209 ----------------AQLKAVFS---NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF----------GLSPVTAGLI  259 (417)
T ss_pred             ----------------hHHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHH
Confidence                            01111111   123444555555544444455555554432211          1111111112


Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc-------hhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-------SNILLTALLSGARMFSMGTFIIANIFA  391 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~  391 (478)
                      .....+.+...-.++|+++||+|.|+.+...+..++++........       +.............+....++..+-.+
T Consensus       260 a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~I  339 (417)
T COG2223         260 AFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMI  339 (417)
T ss_pred             HHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeec
Confidence            2333344455567899999999999988777766655544433321       111111112222222222345678888


Q ss_pred             ccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHHhc
Q 011756          392 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       392 ~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      +.+||. .-+...|+...+|.+|++.-|...+...+..+ ....+.++..+.+++.+..+..
T Consensus       340 p~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         340 PVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             hHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            888875 67888899999999999999998888877766 4567777888777777666654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.86  E-value=2.3e-19  Score=177.37  Aligned_cols=158  Identities=19%  Similarity=0.275  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHh-hhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 011756           31 YSGLGWFSEAMEVMILSFVGPA-VKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLS   92 (478)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~   92 (478)
                      ..+++.+....+....+...|. +++++|+++.+.+++.+...++..+                 +..+.++..++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4556667777888888889995 9999999999999999998776554                 455677777788888


Q ss_pred             hhhc-hHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc----------Ccc
Q 011756           93 AFSP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP----------ILT  161 (478)
Q Consensus        93 ~~a~-~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~----------~~~  161 (478)
                      ++++ +++.+++.|++.|++.+...+...++.|+.|+++|++..++......+|..+++.++..+..          +.+
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~  164 (366)
T TIGR00886        85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA  164 (366)
T ss_pred             HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            8899 99999999999999855444556788999999999999999987777777766666543322          348


Q ss_pred             hHHHH-HHhhHHH-HHHHHHHHhcCCCch
Q 011756          162 WRWLL-ALSAIPA-FVLLIFIVFMPESPR  188 (478)
Q Consensus       162 WR~~f-~i~~i~~-~l~~~~~~~lpESP~  188 (478)
                      ||+.| ...++.. +...+...+.||+|+
T Consensus       165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       165 WGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            99999 4434433 333445556778764

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=6.7e-18  Score=170.60  Aligned_cols=345  Identities=14%  Similarity=0.103  Sum_probs=202.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      ++.....+....+..+.-++++...+...|.+++++++++.+.+++.+.+.+|..+                 +..+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34455555555566677788889999999999999999999999999999887666                 4556667


Q ss_pred             HHHHHHHH---hhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh---
Q 011756           85 TFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM---  157 (478)
Q Consensus        85 ~~i~~~~~---~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~---  157 (478)
                      +.++.+++   ++++|+..++++|+++|+|.|... ....++.|+.|+++|++.++..+..+.+|..+++.++..+.   
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~  180 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77777654   568999999999999999998764 45667788877887777899999999999999988765432   


Q ss_pred             -c--------------C--------cchHHHHHHhh-HHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCC
Q 011756          158 -P--------------I--------LTWRWLLALSA-IPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQT  212 (478)
Q Consensus       158 -~--------------~--------~~WR~~f~i~~-i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~  212 (478)
                       +              .        .+||++|+... +..++.++ ....+||.|.     ++.+               
T Consensus       181 ~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~---------------  240 (438)
T PRK10133        181 VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHS---------------  240 (438)
T ss_pred             CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccc---------------
Confidence             0              0        25666765433 33333322 2333454211     0000               


Q ss_pred             CCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011756          213 SLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLAS  291 (478)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (478)
                                     ++    .+ .+.              ..+.+.++ +|+++...+.. ..   .....++...|.+
T Consensus       241 ---------------~~----~~-~~~--------------~~~~~~ll~~~~~~~~~l~~-~~---~~~~~~~~~~~~~  282 (438)
T PRK10133        241 ---------------DA----KQ-GSF--------------SASLSRLARIRHWRWAVLAQ-FC---YVGAQTACWSYLI  282 (438)
T ss_pred             ---------------cc----cc-cch--------------hhhHHHHHhCchHHHHHHHH-HH---HHHHHHHHHHHHH
Confidence                           00    00 000              00111222 23333222211 11   1122222222222


Q ss_pred             hh-hCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 011756          292 EL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT  370 (478)
Q Consensus       292 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (478)
                      .+ ....          .+.+....-.......++.+.|...++++.||+|||+.+..+..+.+..++......... ..
T Consensus       283 ~~l~~~~----------~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~  351 (438)
T PRK10133        283 RYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GL  351 (438)
T ss_pred             HHHhhhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HH
Confidence            11 1100          011111112223445567788999999999999999987776555443332222222211 12


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHH
Q 011756          371 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILL  437 (478)
Q Consensus       371 ~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~  437 (478)
                      ..+....++....++..+....|.+|.+ .+++.++.. ++.+|+.+.|.+.+.+.+..+ ....+++
T Consensus       352 ~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v  417 (438)
T PRK10133        352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence            2222333344456677888888988864 567777775 455778888888787766544 2344443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.85  E-value=7e-18  Score=167.49  Aligned_cols=141  Identities=18%  Similarity=0.330  Sum_probs=116.4

Q ss_pred             HHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhh
Q 011756           47 SFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAG  109 (478)
Q Consensus        47 ~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G  109 (478)
                      ....|.+.+++|+++++.+++.+++.++..+                 +..+.++..++.+...+++++..+++.|++.|
T Consensus        11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g   90 (377)
T PRK11102         11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHG   90 (377)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            3556788889999999999999988776544                 45566667777778888999999999999999


Q ss_pred             cccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHH-HHHHhcCCCc
Q 011756          110 AGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESP  187 (478)
Q Consensus       110 ig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~-~~~~~lpESP  187 (478)
                      ++.+.. +...+++.|+.|+++|++..++.+....+|..+++.++..+.+..+||+.|.+.++..++.. +..+++||++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102         91 LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            988765 34567889999999999999999999999999999998888888899999998887766653 4456677764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.85  E-value=7.4e-18  Score=168.18  Aligned_cols=351  Identities=13%  Similarity=0.062  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhc
Q 011756           34 LGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSP   96 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~   96 (478)
                      ++.++..+......+..+...+|++.++.+.+++.+.+.++...                 ++.+.+++.++++.+++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~   89 (393)
T PRK11195         10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI   89 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence            45566665333345555566788998998999999988776555                 5556666666666666666


Q ss_pred             hHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHH
Q 011756           97 NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFV  175 (478)
Q Consensus        97 ~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l  175 (478)
                      +.   ++.|+++|++.+.. +...+++.|++|+++|++++++.+....+|.+++|.+++.+.+. .|+..+.+.+...++
T Consensus        90 ~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~  165 (393)
T PRK11195         90 HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLL  165 (393)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            64   78999999998876 45677899999999999999999999999999999999887664 488887776655554


Q ss_pred             HHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccc
Q 011756          176 LLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFS  255 (478)
Q Consensus       176 ~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (478)
                      ..+....+||+|+..  +++.++..+.++...                                               .
T Consensus       166 ~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~-----------------------------------------------~  196 (393)
T PRK11195        166 AALFNLFIPRLGARR--PGQSWNPIALLRDFF-----------------------------------------------H  196 (393)
T ss_pred             HHHHHhcCCCCcccc--cccCCCHHHHHHHHH-----------------------------------------------H
Confidence            455566789876421  000000000000000                                               0


Q ss_pred             hhhcccCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHH
Q 011756          256 SFLMLFSPRFFKTTIL-LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAA  334 (478)
Q Consensus       256 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  334 (478)
                      ..+.+++++..+.... ....+.......+....+.+...+              .+....-.......++.++|.+..+
T Consensus       197 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg--------------~s~~~~G~~~~~~~~g~i~g~~~~~  262 (393)
T PRK11195        197 ACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG--------------ITLNQPAYLQAVVAIGIAVGAGAAA  262 (393)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CChhHHHHHHHHHHHHHHHHHHHHH
Confidence            1112222222222222 122222222223333333332211              1111111223445567788888889


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh-hHHHHHHHHHHHhH
Q 011756          335 LLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM-RSTGAGVAYAVGRI  413 (478)
Q Consensus       335 ~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~-R~~~~g~~~~~~~l  413 (478)
                      .+.||.++|+.+..+..+ +...+.+....+.+......+...+..............|.-|.+. +|++.++.+...++
T Consensus       263 ~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~  341 (393)
T PRK11195        263 RLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENL  341 (393)
T ss_pred             HHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHH
Confidence            999998888876665433 2222222222222212222222222111122334555667666655 79999999999999


Q ss_pred             hHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcc
Q 011756          414 GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  453 (478)
Q Consensus       414 g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  453 (478)
                      +..++..+...+ ...+-...+.+.+...+++....+.+.
T Consensus       342 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        342 AMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             HHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999888877644 333434444444444455555555554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=3.3e-19  Score=178.65  Aligned_cols=345  Identities=20%  Similarity=0.314  Sum_probs=211.9

Q ss_pred             hhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhh--chHHHHHHHHHHhhcccCc
Q 011756           54 KSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFS--PNYISLLILRGLAGAGLGS  114 (478)
Q Consensus        54 ~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a--~~~~~l~~~R~l~Gig~g~  114 (478)
                      +.+|+++++|++++.|+++.|.++                 +..+.+++++++++.-.+  .+++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            347889999999999999999877                 445566666666665433  3455789999999999998


Q ss_pred             h-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHHHHH-HhcCCCchhhh
Q 011756          115 G-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFI-VFMPESPRYLC  191 (478)
Q Consensus       115 ~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~WR~~f~i~~i~~~l~~~~~-~~lpESP~~l~  191 (478)
                      . +......+.|+|++||++..++...+..+|.+++.++++.+.+. .||+..|++.++.+++..+.+ ++..|+|+-  
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~--  222 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK--  222 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence            6 45566789999999999999999999999999999999988877 999999999999888875554 556688873  


Q ss_pred             hcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHH
Q 011756          192 TKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTIL  271 (478)
Q Consensus       192 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  271 (478)
                       |.+..+.+  ++++.+...+                +    ..         ++  +.+   .+++.+++.   +..+.
T Consensus       223 -h~~is~~E--l~~I~~~k~~----------------~----~~---------~~--~~~---vP~~~i~ts---~~vwa  262 (466)
T KOG2532|consen  223 -HPNISEKE--LKYIEKGKSE----------------A----HV---------KK--KPP---VPYKAILTS---PPVWA  262 (466)
T ss_pred             -CCCCCHHH--HHHHHhcccc----------------c----cc---------CC--CCC---CCHHHHHcC---HHHHH
Confidence             22222211  1122111000                0    00         00  001   133334432   13334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH--------
Q 011756          272 LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK--------  343 (478)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr--------  343 (478)
                      .|+..++....++.+..+.|.+...        .+..+..+  ......+..+...+-.+++|.++||+.+|        
T Consensus       263 i~~~~f~~~~~~~~l~~y~PtY~~~--------VL~f~v~~--~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~r  332 (466)
T KOG2532|consen  263 IWISAFGGNWGFYLLLTYLPTYLKE--------VLGFDVRE--TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVR  332 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHH--------HhCCChhh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHH
Confidence            5555555555555555555544321        00111111  11223355566677788999999998552        


Q ss_pred             HHH-HHHHHHHHHHHHHHHhhch-hH-HHHHHHHHHHHHhhhhhhhhhhhccccc-CcChhHHHHHHHHHHHhHhHhHHH
Q 011756          344 LSM-TIMFIFVCIFLLPLVTLQS-NI-LLTALLSGARMFSMGTFIIANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCP  419 (478)
Q Consensus       344 ~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~E~~-p~~~R~~~~g~~~~~~~lg~~~~p  419 (478)
                      +.+ .++....+++++.+.+..+ +. ....++..... ..|.. ....+.+-.. .++.-+..+|+++.++.+.++++|
T Consensus       333 kifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~-~~g~~-~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P  410 (466)
T KOG2532|consen  333 KIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIG-LSGFN-ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAP  410 (466)
T ss_pred             HHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHH-Hcccc-hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            222 3444455555555444332 22 22333322222 22222 2222233333 678999999999999999999999


Q ss_pred             HHHHHHhhcc---chhHHHHHHHHHHHHHHHHHHhc
Q 011756          420 LVAVGLVTSC---HQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       420 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      .+.+.+....   .+...|++.+++.+++.++..++
T Consensus       411 ~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  411 LLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            9988777421   23345666666666665444343

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.85  E-value=1.1e-17  Score=167.48  Aligned_cols=325  Identities=14%  Similarity=0.122  Sum_probs=202.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHh
Q 011756           31 YSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSA   93 (478)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~   93 (478)
                      ..+...+.-+++....+...|.+++++|+++.+.|++.+...+|..+                 ++.+.+++.++.++..
T Consensus         7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~   86 (410)
T TIGR00885         7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW   86 (410)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            33445566677778888899999999999999999999999887665                 4555666666665543


Q ss_pred             ---hhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Q 011756           94 ---FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-----------  158 (478)
Q Consensus        94 ---~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-----------  158 (478)
                         ..+|++.+++.|++.|+|.|.. ....+++.|..|+++|++..++.+..+.+|..+++.++..+..           
T Consensus        87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~  166 (410)
T TIGR00885        87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL  166 (410)
T ss_pred             HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence               3468999999999999999876 4556788899999999999999999999999999988765531           


Q ss_pred             ---------------CcchHHHHHHhhHHHHHHHHHHHh--cCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCC
Q 011756          159 ---------------ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  221 (478)
Q Consensus       159 ---------------~~~WR~~f~i~~i~~~l~~~~~~~--lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  221 (478)
                                     ..+||++|.+.++..++..+...+  +||.++     +  ++                       
T Consensus       167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~~-----------------------  216 (410)
T TIGR00885       167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--DA-----------------------  216 (410)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--cc-----------------------
Confidence                           136999998888766655443333  333211     0  00                       


Q ss_pred             CCCCCcccccCCCCcccccccccccccccccccchhhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 011756          222 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  300 (478)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  300 (478)
                             +      +.+..              .+.++.++ ++++.. .+..+.+.+...   +...+.+.+...... 
T Consensus       217 -------~------~~~~~--------------~~~~~~~~~~~~~~~-~l~~f~yvg~e~---~~~s~l~~y~~~~~~-  264 (410)
T TIGR00885       217 -------K------QISFS--------------ASLSRLARIRHYREG-VIAQFFYVGVQI---MCWTFIIQYAVRLIP-  264 (410)
T ss_pred             -------c------cccch--------------hhHHHHHhChhHHHH-HHHHHHHHHHHH---HHHHHHHHHHhhccC-
Confidence                   0      00000              00011111 222221 111122222211   111122221111000 


Q ss_pred             ccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHh
Q 011756          301 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS  380 (478)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (478)
                           . ........+  ..........|.++++++.||+++|+.+.++..++.++.+......+... ...+....++.
T Consensus       265 -----~-~~~~~a~~~--~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~  335 (410)
T TIGR00885       265 -----G-MTAGFAANY--NIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFM  335 (410)
T ss_pred             -----C-CCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHH
Confidence                 0 000001111  11222445789999999999999999877766655554444333332222 22333333455


Q ss_pred             hhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          381 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       381 ~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      ...|+..+....+.++++.+..+.+++...  +|+.+.|.+.+.+.+.
T Consensus       336 s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       336 SLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence            566788899999999988887777777665  9999999999988773

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.84  E-value=2.8e-17  Score=165.09  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 011756           30 AYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLS   92 (478)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~   92 (478)
                      ...++.-+....+........|.+.++++.+.++.++..+.+++|...                 ++.+.+++.++++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            334444455556666667778889999999999999999998887654                 556677788888889


Q ss_pred             hhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhH
Q 011756           93 AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI  171 (478)
Q Consensus        93 ~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i  171 (478)
                      ++++|++.++++|+++|++.+... ....+..|+.|+++|++.+++......+|..+++.++..+.++.|||+.|++.++
T Consensus        99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~  178 (413)
T PRK15403         99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV  178 (413)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            999999999999999999887543 3456688999999999999999999999999999999888778899999999988


Q ss_pred             HHHHHHHH-HHhcCCCch
Q 011756          172 PAFVLLIF-IVFMPESPR  188 (478)
Q Consensus       172 ~~~l~~~~-~~~lpESP~  188 (478)
                      ..++..+. .+++||+++
T Consensus       179 ~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        179 MGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHhCCCCcc
Confidence            77766543 456888753

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.84  E-value=1.4e-16  Score=159.23  Aligned_cols=162  Identities=12%  Similarity=0.100  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 011756           27 LALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAG   89 (478)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~   89 (478)
                      +.+....+......+.........|.+.+++|+++.+.+++.+.+.++..+                 +..+.....++.
T Consensus         8 ~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   87 (394)
T PRK11652          8 NLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGT   87 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence            333444444445556655666678889999999999999999988777554                 455666667777


Q ss_pred             HHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q 011756           90 LLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL  168 (478)
Q Consensus        90 ~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i  168 (478)
                      +...+++|++.+++.|++.|++.+... ....+..|..|+++|++..+..+.+..+|..+++.++..+.+..+||+.|++
T Consensus        88 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         88 LVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             HHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            778889999999999999999887653 3445678999999999999999999999999999998888888899999999


Q ss_pred             hhHHHHHH-HHHHHhcCCCch
Q 011756          169 SAIPAFVL-LIFIVFMPESPR  188 (478)
Q Consensus       169 ~~i~~~l~-~~~~~~lpESP~  188 (478)
                      .++..++. ++..+++||+|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        168 LLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHhCCccCc
Confidence            87766554 344566788753

>TIGR00901 2A0125 AmpG-related permease

Probab=99.83  E-value=1e-17  Score=165.11  Aligned_cols=305  Identities=10%  Similarity=0.088  Sum_probs=177.6

Q ss_pred             HHHHHhHHhhhhhcCCCcchhhHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHHhhh---chHH
Q 011756           44 MILSFVGPAVKSEWGLSSSEESLITTVVFA-------GMMS--------------ILGGALVTFVAGLLSAFS---PNYI   99 (478)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~-------G~~~--------------~~~~~~~~~i~~~~~~~a---~~~~   99 (478)
                      ...++..|.+.+|+|++.++.|++.+....       |...              ++.+.+...+.....++.   .++.
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~   84 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP   84 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence            456778888999999999999988644321       1111              233344444554555566   3555


Q ss_pred             HHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc--------hHHHHHHhh
Q 011756          100 SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT--------WRWLLALSA  170 (478)
Q Consensus       100 ~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--------WR~~f~i~~  170 (478)
                      .+...+++.|.+.+.. ++..+++.|++|+|+|+++.++...+..+|.++++.++..+.+..+        ||..|++.+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a  164 (356)
T TIGR00901        85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA  164 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence            6677777777655544 3456789999999999999999999999999999999888777777        999999999


Q ss_pred             HHHHHHHHHHHh-cCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccc
Q 011756          171 IPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV  249 (478)
Q Consensus       171 i~~~l~~~~~~~-lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (478)
                      +..++..+..++ .||+++.   +.+.++..                                    ++.          
T Consensus       165 i~~l~~~~~~~~~~~e~~~~---~~~~~~~~------------------------------------~~~----------  195 (356)
T TIGR00901       165 LLILPGLLVTLFLAKEPQED---ASVPKPLT------------------------------------QAV----------  195 (356)
T ss_pred             HHHHHHHHHHHHhccCCCcc---cccchhHH------------------------------------HHH----------
Confidence            877766555543 5775321   00000000                                    000          


Q ss_pred             cccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhh-HHHHHHHHhhhhh
Q 011756          250 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASV-YINVFITSFAELP  328 (478)
Q Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  328 (478)
                          ...++.+++++..++.+......+.....++....+.+.+....           +.+.... ........+..++
T Consensus       196 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------g~~~~~~g~~~~~~~~~~~~~  260 (356)
T TIGR00901       196 ----LKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-----------GFSKEEIALVAKINGLLGAIL  260 (356)
T ss_pred             ----HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHhHHHHHHHHHH
Confidence                00122222222212222222222233344444433333322111           1111111 1122223345678


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-----------chhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          329 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-----------QSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       329 g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      |.++++++.||+|||+.+..+..+..+........           .+.+......+...+.....++....+..|.+|+
T Consensus       261 g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~  340 (356)
T TIGR00901       261 GGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP  340 (356)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence            99999999999999988776665444333222211           1112122222222233334556678999999999


Q ss_pred             ChhHHHHHHHHHHHh
Q 011756          398 SMRSTGAGVAYAVGR  412 (478)
Q Consensus       398 ~~R~~~~g~~~~~~~  412 (478)
                      +.|++..|+.+...+
T Consensus       341 ~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       341 KFGATQMALLSSLSA  355 (356)
T ss_pred             CccHHHHHHHHHHHh
Confidence            999999999887654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.81  E-value=2.6e-16  Score=157.44  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=109.6

Q ss_pred             HHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHh
Q 011756           46 LSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLA  108 (478)
Q Consensus        46 ~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~  108 (478)
                      ..+..+.+++++|+++.+.|++.+...++...                 ++.+.....++.+..+++++++.+++.|++.
T Consensus        30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  109 (400)
T PRK11646         30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS  109 (400)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44455567889999999999998875443222                 5556667777777788889999999999999


Q ss_pred             hcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH-HHHhcCC
Q 011756          109 GAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPE  185 (478)
Q Consensus       109 Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~-~~~~lpE  185 (478)
                      |++.+.. +...+++.|++|+++||+..++......+|..+++.++..+. .++||+.|++.++..++..+ ..+++||
T Consensus       110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9987654 445677899999999999999999999999999999988877 68999999988776655433 3445555

>TIGR00889 2A0110 nucleoside transporter

Probab=99.81  E-value=3.5e-16  Score=157.27  Aligned_cols=351  Identities=12%  Similarity=0.057  Sum_probs=192.1

Q ss_pred             HHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 011756           45 ILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS------------------ILGGALVTFVAGLLSAFSPNYISLLILRG  106 (478)
Q Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~------------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~  106 (478)
                      ..++..+.+++++|+++.|.|++.+++.++.++                  +..+.+...++..+..+.+++..+++.|+
T Consensus        21 ~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (418)
T TIGR00889        21 WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLL  100 (418)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            345666778888999999999999998877555                  33444555566666778889999999999


Q ss_pred             HhhcccCchh-hHH----HHHh----hccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHH
Q 011756          107 LAGAGLGSGH-VFF----SWFM----EFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLL  177 (478)
Q Consensus       107 l~Gig~g~~~-~~~----~~~~----E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~  177 (478)
                      +.|++.+... ...    .+..    |......|.|..+.      +|..+++.++..+....+|+.. ++.++..++..
T Consensus       101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~~f-~~~~~~~~~~~  173 (418)
T TIGR00889       101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNIQL-YITAGSSALLG  173 (418)
T ss_pred             HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhHHH-HHHHHHHHHHH
Confidence            9998765432 222    2333    33444456666553      4556666666554333456654 44554444454


Q ss_pred             HHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchh
Q 011756          178 IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSF  257 (478)
Q Consensus       178 ~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (478)
                      +..+++||+|+-   +++.++                           +..      +  .      .     +  ....
T Consensus       174 ~~~~~~~e~~~~---~~~~~~---------------------------~~~------~--~------~-----~--~~~~  202 (418)
T TIGR00889       174 VFALTLPDIPVA---KSTAKM---------------------------SIK------V--M------L-----G--LDAF  202 (418)
T ss_pred             HHHhcCCCCCCC---cccccc---------------------------CHH------H--H------h-----h--hhHH
Confidence            556678888641   000000                           000      0  0      0     0  0000


Q ss_pred             hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHH
Q 011756          258 LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLV  337 (478)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  337 (478)
                      ..+++++++.......+....... ++  .+..+.+.+ .+.  +... ..............+..+..+++.+..++++
T Consensus       203 ~~~k~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~-~g~--~~~~-~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~  275 (418)
T TIGR00889       203 ILFKNKRMAIFFFFSMLLGAPLQI-TN--IFGNGFLHE-FGR--NPEF-ADSFVVKNASIWMSLSQFSEIFFILTIPFFL  275 (418)
T ss_pred             HHhcCCCeeeHHHHHHHHHhHHHH-HH--HhHHHHHHH-hcc--cccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111223322211111111111111 11  111111111 000  0000 0000001111223444566788889999999


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHhhch-h---HHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHH-HHHh
Q 011756          338 DRVGRKLSMTIMFIFVCIFLLPLVTLQS-N---ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY-AVGR  412 (478)
Q Consensus       338 dr~GRr~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~-~~~~  412 (478)
                      ||+|||+++..+....++.......... .   +.................+....+.+|.+|++.|++++|+.+ ....
T Consensus       276 dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~  355 (418)
T TIGR00889       276 KRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG  355 (418)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence            9999999988877665554333322111 1   111111111111111223445678899999999999999997 4567


Q ss_pred             HhHhHHHHHHHHHhhccc------hhHHHHHHHHHHHHHHHHHHhccccccCcc
Q 011756          413 IGGMVCPLVAVGLVTSCH------QTAAILLLEALIVLSVVVILLIPFETKGKE  460 (478)
Q Consensus       413 lg~~~~p~~~~~l~~~~~------~~~~~~~~~~~~~i~~~~~~~~~pet~g~~  460 (478)
                      +|+.++|.+.+.+.+..+      +...+.+.+++.++..+..+++.||++++-
T Consensus       356 lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       356 FGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            899999999998877643      345566777777777788888888887653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.80  E-value=7.4e-16  Score=153.32  Aligned_cols=342  Identities=14%  Similarity=0.032  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH--------------HHHH----HHHHHHHH-HHHhh
Q 011756           34 LGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS--------------ILGG----ALVTFVAG-LLSAF   94 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~--------------~~~~----~~~~~i~~-~~~~~   94 (478)
                      ++++...+-........|...+|+|.+..+.|++.++..++...              ....    .....+.. .....
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~   90 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG   90 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444444556677789999999999998887655332              0101    11111111 23346


Q ss_pred             hchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHH
Q 011756           95 SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPA  173 (478)
Q Consensus        95 a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~  173 (478)
                      +++++.+++.|.++|.+.+.. +...++..|+  +++|++..+......++|.+++++++..+.+++|||..|.+..+..
T Consensus        91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~  168 (382)
T TIGR00902        91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL  168 (382)
T ss_pred             hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            789999999999999877654 4444555554  5788999999999999999999999998888899999998876543


Q ss_pred             HHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccc
Q 011756          174 FVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG  253 (478)
Q Consensus       174 ~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (478)
                      .+.++ ...++|+|+    ++++++                              +    .+.++               
T Consensus       169 ~~~~~-~~~~~~~~~----~~~~~~------------------------------~----~~~~~---------------  194 (382)
T TIGR00902       169 AFMLI-GFLIKPTIP----PKDAIP------------------------------E----DESQG---------------  194 (382)
T ss_pred             HHHHH-HHHcCCCCC----CCcccc------------------------------c----ccccc---------------
Confidence            32222 333444321    000000                              0    00000               


Q ss_pred             cchhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHH
Q 011756          254 FSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLT  332 (478)
Q Consensus       254 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  332 (478)
                      .++..+++ +|+.+.-.....+.... ...++   .+.+.+....+           .+....-....+..+..+++...
T Consensus       195 ~~~~~~~l~~~~~~~~l~~~~l~~~~-~~~~~---~~~~~~l~~~g-----------~s~~~~g~l~~~~~~~~i~~~~~  259 (382)
T TIGR00902       195 DSAFIALLKNPMNLRFLAAVCLIQGA-HAAYY---GFSAIYWQAAG-----------ISASATGLLWGIGVLAEIIIFAF  259 (382)
T ss_pred             chhHHHHHcChHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHCC-----------CCHhHHHHHHHHHHHHHHHHHHH
Confidence            00112222 23333222211221111 11121   12222111111           11111111223455677888899


Q ss_pred             HHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHH-H
Q 011756          333 AALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAV-G  411 (478)
Q Consensus       333 ~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~-~  411 (478)
                      .+.+.||+|+|+.+..+.....+....+....+.+.....-....+.....++....+.++. |.+.|++++++.+.. .
T Consensus       260 ~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~  338 (382)
T TIGR00902       260 SNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAM  338 (382)
T ss_pred             hHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHH
Confidence            99999999999998887776665544444433333222222222111122233445566677 999999999997654 4


Q ss_pred             hHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 011756          412 RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVV  448 (478)
Q Consensus       412 ~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  448 (478)
                      .+|..++|.+.+.+.+..+ ...|+..+++.+++.++
T Consensus       339 g~g~~~g~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       339 GGLIAIFTAFAGFIYPTLG-AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence            5788889999998887765 35566666666655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.80  E-value=2.9e-16  Score=178.04  Aligned_cols=355  Identities=13%  Similarity=0.022  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHhHHhhhhhcCCCcc--hhhHHHHHHHHHHHH-----------------HHHHHHHHHHHH---HHHhhhc
Q 011756           39 EAMEVMILSFVGPAVKSEWGLSSS--EESLITTVVFAGMMS-----------------ILGGALVTFVAG---LLSAFSP   96 (478)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~---~~~~~a~   96 (478)
                      ...|........+.+..+++.+..  ..+++.+++.++..+                 ++.+.++..++.   .++..++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~  101 (1146)
T PRK08633         22 AFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG  101 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            455666666666777777776544  367778877766544                 333333333333   3344567


Q ss_pred             hHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC---------cchHHHH
Q 011756           97 NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI---------LTWRWLL  166 (478)
Q Consensus        97 ~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~---------~~WR~~f  166 (478)
                      +++.++++|++.|++.|.. ++..+++.|++|+++|++++++.+.+..+|.++++.++..+...         .+|++.+
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~  181 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPA  181 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHH
Confidence            8999999999999988875 45567899999999999999999999999999999998877654         2455555


Q ss_pred             HHhhHH-HHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccc
Q 011756          167 ALSAIP-AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARK  245 (478)
Q Consensus       167 ~i~~i~-~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (478)
                      .+..+. .++.++..+.+||+|++...+++                                 . ......         
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~-~~~~~~---------  218 (1146)
T PRK08633        182 GLVLLAVAVLGLIFAYRLPKVPAAAPEVFD---------------------------------K-KKYLFP---------  218 (1146)
T ss_pred             HHHHHHHHHHHHHHHhcCcCCCCCCccccc---------------------------------c-cccccH---------
Confidence            444433 33344556668888763211000                                 0 000000         


Q ss_pred             cccccccccchhhcccCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccch-hhHHHHHHHH
Q 011756          246 RTTVRKSGFSSFLMLFSPRFFKTTIL-LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA-SVYINVFITS  323 (478)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  323 (478)
                           +.....++.+++.+......+ ..+.++...    ....+.+.+....          .+.+.. ..........
T Consensus       219 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------~g~s~~~~~g~~~~~~~  279 (1146)
T PRK08633        219 -----KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQ----LAQANFPAYAKEV----------LGLDNTFQVQYLLAASA  279 (1146)
T ss_pred             -----HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHH----------hCCCcHHHHHHHHHHHH
Confidence                 000012233343333222221 111111111    1111111111000          001111 1112233445


Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHH
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  403 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~  403 (478)
                      ++.++|.++.+++.||.++|+.+.++..+.++..+.+....+.+...+..+...++........+.+..|..|.+.||++
T Consensus       280 ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~  359 (1146)
T PRK08633        280 IGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKV  359 (1146)
T ss_pred             HHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhh
Confidence            66788899999999999998877666554444333333222222222222222222222334567888899999999999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHhcccc
Q 011756          404 AGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFE  455 (478)
Q Consensus       404 ~g~~~~~~~lg~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~pe  455 (478)
                      .|+.+.+.++++.+++.+...+... .+....+.+.+.+.++..+......|+
T Consensus       360 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (1146)
T PRK08633        360 LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPD  412 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999887777665433221 112223334444444444444433444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.80  E-value=9e-16  Score=153.82  Aligned_cols=153  Identities=18%  Similarity=0.093  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHHhh
Q 011756           36 WFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFA-------GMMS--------------ILGGALVTFVAGLLSAF   94 (478)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~-------G~~~--------------~~~~~~~~~i~~~~~~~   94 (478)
                      ++.++..........|..-+|-|++.+|.|++..+...       |...              ++.+.+...++....++
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~   87 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF   87 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence            46677777777788888877889999999988666432       2221              33334444444444455


Q ss_pred             h---chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHh
Q 011756           95 S---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI-LTWRWLLALS  169 (478)
Q Consensus        95 a---~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~WR~~f~i~  169 (478)
                      .   .+++.+++..++.|+..+.. ++..+++.|+.|+|+|++..++...++.+|.++++.++..+.+. .|||..|++.
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~  167 (402)
T PRK11902         88 CPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLM  167 (402)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHH
Confidence            5   35777888887777655544 45567899999999999999999999999999999988877775 5999999998


Q ss_pred             hHHHHHHHHHHHhcCCCch
Q 011756          170 AIPAFVLLIFIVFMPESPR  188 (478)
Q Consensus       170 ~i~~~l~~~~~~~lpESP~  188 (478)
                      ++..++..+..+++||+++
T Consensus       168 a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        168 AGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HHHHHHHHHHHHhcCCCcc
Confidence            8776666555667888754

>PRK10054 putative transporter; Provisional

Probab=99.80  E-value=3.5e-16  Score=156.22  Aligned_cols=329  Identities=13%  Similarity=0.098  Sum_probs=189.6

Q ss_pred             HHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHh
Q 011756           46 LSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLA  108 (478)
Q Consensus        46 ~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~  108 (478)
                      ..+..+.+++++|+++.+.|++.+...++...                 ++.+.+...++.+..++++|++.++++|++.
T Consensus        27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (395)
T PRK10054         27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALI  106 (395)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34455667889999999999999987654333                 4445555566667778899999999999998


Q ss_pred             hcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH-HHHhcCCC
Q 011756          109 GAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPES  186 (478)
Q Consensus       109 Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~-~~~~lpES  186 (478)
                      |.+.+.. +....++.|..|+++|++..++.....++|..+++.++..+.. .+||..|.+.++..++..+ ..+++||+
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        107 NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8765543 3456788999999999999999999999999999999887664 6999999988776665533 33446654


Q ss_pred             chhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhccc-Ccch
Q 011756          187 PRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRF  265 (478)
Q Consensus       187 P~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~  265 (478)
                      ++    +++.++ +                            +     +.                   +.++.+ +++.
T Consensus       186 ~~----~~~~~~-~----------------------------~-----~~-------------------~~~~~~~~~~~  208 (395)
T PRK10054        186 EK----AIATET-G----------------------------S-----VW-------------------SPSVLLQDKAL  208 (395)
T ss_pred             cc----ccccch-h----------------------------h-----hh-------------------hhhhhccCcee
Confidence            32    000000 0                            0     00                   000111 1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHH
Q 011756          266 FKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLS  345 (478)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~  345 (478)
                      +.......+..+...........+.+... .           ...................++.....+.+.||.+||+.
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  276 (395)
T PRK10054        209 LWFTCSGFLASFVSGAFASCISQYVMVVA-D-----------SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL  276 (395)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHhc-c-----------cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH
Confidence            22211111111111100000111111110 0           00000111111122223334455677789999999998


Q ss_pred             HHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHH
Q 011756          346 MTIMFIFVCIFLLPLVTL-QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  424 (478)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~  424 (478)
                      +..+..+..+....+... .+.+.................+..+....|..|++.|++..+.. +.+++|..++|.+.+.
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        277 MTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ-SLGWLGAAINPLVSGV  355 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH-HHHHHHHHHHHHHHHH
Confidence            777654444333322222 22221111111111111122334566788999999999999864 4777999999999999


Q ss_pred             HhhccchhHHHHHHHHHHHHH
Q 011756          425 LVTSCHQTAAILLLEALIVLS  445 (478)
Q Consensus       425 l~~~~~~~~~~~~~~~~~~i~  445 (478)
                      +.+..+....+.+++.+..+.
T Consensus       356 l~~~~g~~~~~~~~~~~~~~~  376 (395)
T PRK10054        356 ILTTLPPWSLFVILALAIVAA  376 (395)
T ss_pred             HHHHcChhhHHHHHHHHHHHH
Confidence            988776555555544444333

>TIGR00896 CynX cyanate transporter

Probab=99.79  E-value=1.3e-16  Score=157.21  Aligned_cols=310  Identities=18%  Similarity=0.195  Sum_probs=182.0

Q ss_pred             HHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 011756           45 ILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGL  107 (478)
Q Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l  107 (478)
                      ..+...|.+++|+|++..+.+++.+...++..+                 +..+.++..++.+.. .++++..+++.|++
T Consensus        18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~   96 (355)
T TIGR00896        18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTAL   96 (355)
T ss_pred             cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence            445678899999999999999999998877555                 344444555555555 67899999999999


Q ss_pred             hhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHhhHHHHHHHHHHHhcC
Q 011756          108 AGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL--TWRWLLALSAIPAFVLLIFIVFMP  184 (478)
Q Consensus       108 ~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~--~WR~~f~i~~i~~~l~~~~~~~lp  184 (478)
                      .|+|.|... ....+..|+.| ++|+++.+..+.+..+|..+++.+...+.++.  +||+.|.+.++..++.  ...++|
T Consensus        97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~--~~~~~~  173 (355)
T TIGR00896        97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA--LLAWIP  173 (355)
T ss_pred             HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHhh
Confidence            999987643 33456678876 68999999999999999999988877665543  4999988766544333  223455


Q ss_pred             CCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhccc-Cc
Q 011756          185 ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SP  263 (478)
Q Consensus       185 ESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~  263 (478)
                      |+++      +++                 +     ++     +.     ...                  ..+..+ ++
T Consensus       174 ~~~~------~~~-----------------~-----~~-----~~-----~~~------------------~~~~~~~~~  197 (355)
T TIGR00896       174 QVRR------RVA-----------------A-----NQ-----TT-----TRL------------------TPVRIWRSP  197 (355)
T ss_pred             hhcc------ccC-----------------C-----CC-----CC-----CCC------------------CCchhhcCH
Confidence            5421      000                 0     00     00     000                  000111 12


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhh-ch
Q 011756          264 RFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV-GR  342 (478)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-GR  342 (478)
                      +.+.    ...........+++...+.|.+....+           .+....-.......++.+++.+..+++.||+ +|
T Consensus       198 ~~~~----~~~~~~~~~~~~~~~~~~lp~~~~~~g-----------~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       198 LAWQ----VTVFFGLQSGLYYSLIGWLPAILISHG-----------ASAATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence            2221    111222233344444444444332111           1111111223445567888999999999999 45


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcc-cccCcChhHHHHHHHHHHHhHhHhHHHHH
Q 011756          343 KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP-EIYPTSMRSTGAGVAYAVGRIGGMVCPLV  421 (478)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-E~~p~~~R~~~~g~~~~~~~lg~~~~p~~  421 (478)
                      |+.+..+..+..+.........+..... ......+.....++....... +..+++.+++..|+.+.++++++.++|.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~  341 (355)
T TIGR00896       263 RGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLF  341 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555554444433332222222111111 111111111122333344444 44456778999999999999999999999


Q ss_pred             HHHHhhccc
Q 011756          422 AVGLVTSCH  430 (478)
Q Consensus       422 ~~~l~~~~~  430 (478)
                      .+.+.+..+
T Consensus       342 ~G~l~~~~g  350 (355)
T TIGR00896       342 VGVLHDISG  350 (355)
T ss_pred             HHHHHHHhc
Confidence            888876544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.77  E-value=1.3e-15  Score=172.32  Aligned_cols=337  Identities=10%  Similarity=-0.043  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhH-HhhhhhcCCCcc-hhhHHHHHHHHHHHH----------------HH----HHHHHH
Q 011756           28 ALAYSGLGWFSEAMEVMILSFVG-PAVKSEWGLSSS-EESLITTVVFAGMMS----------------IL----GGALVT   85 (478)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~~s~~~~G~~~----------------~~----~~~~~~   85 (478)
                      +++...++.+.|.++...+.+.. ..+..+.+.++. ..++..+.+.++..+                ++    ...++.
T Consensus        16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~   95 (1140)
T PRK06814         16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI   95 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence            34444566677777776655443 345444444333 355666666554333                11    122222


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Q 011756           86 FVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRW  164 (478)
Q Consensus        86 ~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~  164 (478)
                      ....+.....+|+++++++|+++|++.+.. ++..+++.|++|+++|++++++.+.+..+|.++++.++.++....+||+
T Consensus        96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~  175 (1140)
T PRK06814         96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI  175 (1140)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            223333334589999999999999998865 5667789999999999999999999999999999999999988899999


Q ss_pred             HHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccc
Q 011756          165 LLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSAR  244 (478)
Q Consensus       165 ~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (478)
                      .|+...+..++.++..+++||+|.-  .+++.                                .     +.. ..    
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------------------------~-----~~~-~~----  211 (1140)
T PRK06814        176 LVALLMGIAVLGWLASLFIPKTGNA--APDLK--------------------------------I-----DRN-II----  211 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCC--CCCCe--------------------------------e-----ccc-hH----
Confidence            9966556666556666677776420  00000                                0     000 00    


Q ss_pred             ccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHh
Q 011756          245 KRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSF  324 (478)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (478)
                            ++....++..++.+......+.   .+...+.++....+.|.+....          .+..............+
T Consensus       212 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~  272 (1140)
T PRK06814        212 ------RSTITLLKYAKADKRIWLAILG---ISWFWLVGAVVLSQLPLLAKET----------LGGDENVATLFLAVFSV  272 (1140)
T ss_pred             ------HHHHHHHHHHhcCchHHHHHHH---HHHHHHHHHHHHHHhHHHHHHH----------cCCchHHHHHHHHHHHH
Confidence                  0000122223332222221111   1111111222222333222110          00111111122344456


Q ss_pred             hhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--------------------chhHHHHHHHHHHHHHhhhhh
Q 011756          325 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--------------------QSNILLTALLSGARMFSMGTF  384 (478)
Q Consensus       325 ~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~g~~  384 (478)
                      +.++|.++.++++|+.++++.+..+..+.+++.+.+...                    .+.+...+..+...++.....
T Consensus       273 g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  352 (1140)
T PRK06814        273 GVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYI  352 (1140)
T ss_pred             HHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhH
Confidence            778899999999988776665444433332222211110                    111212221222222222233


Q ss_pred             hhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          385 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       385 ~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                      ...+.+..+..|.+.||++.|+.+.++.++..+++.+.+.+..
T Consensus       353 ~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        353 VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999988776653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.76  E-value=1.8e-15  Score=153.37  Aligned_cols=322  Identities=15%  Similarity=0.042  Sum_probs=185.5

Q ss_pred             HHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhhhch-
Q 011756           41 MEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS----------------------ILGGALVTFVAGLLSAFSPN-   97 (478)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~----------------------~~~~~~~~~i~~~~~~~a~~-   97 (478)
                      .......+..+.+.+++|+++.+.|++.++..+...+                      ++.+.....++.++...+++ 
T Consensus        14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~   93 (437)
T TIGR00792        14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF   93 (437)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence            3444445667778888999999999999987665444                      44555556666665655553 


Q ss_pred             -----HHHHHHHHHHhhcccCchh-hHHHHHhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-------cCcchH
Q 011756           98 -----YISLLILRGLAGAGLGSGH-VFFSWFMEFV-PPSNRGKWMVVFSTFWTFGSVSEAALAWIVM-------PILTWR  163 (478)
Q Consensus        98 -----~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-------~~~~WR  163 (478)
                           ...+++.+++.+++.+... +..++..|.+ ++++|++..++.+.+..+|.++++.+...+.       +..+||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence                 4567788888887776543 3445677887 5789999999998888888877766544332       246899


Q ss_pred             HHHHHhhHHHHHHHHH-HHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccc
Q 011756          164 WLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSS  242 (478)
Q Consensus       164 ~~f~i~~i~~~l~~~~-~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (478)
                      +.+.+.++..++..+. .+..||+|+.     ++                        +      ++    .++.+.   
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~------------------------~------~~----~~~~~~---  211 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKERYSE-----IP------------------------K------NI----EKKLSL---  211 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEecCCC-----CC------------------------c------cc----ccCCCH---
Confidence            9999888877666443 4456665310     00                        0      00    000000   


Q ss_pred             ccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHH
Q 011756          243 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFIT  322 (478)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (478)
                                 ...++.+++.+..+....   ..+.....++....+.+.+....          .+..... .....+.
T Consensus       212 -----------~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~  266 (437)
T TIGR00792       212 -----------KQIFKALFKNDQLLILCL---AYLFYNLAFNIKNGVQVYYFTYV----------LGDPELF-SYMGSIA  266 (437)
T ss_pred             -----------HHHHHHHhCCHHHHHHHH---HHHHHHHHHHHHcchhheeEeee----------cCChHHH-HHHHHHH
Confidence                       012223333222221111   11111222222111112111100          0001111 1122334


Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHhhhhhhhhhhhcccccC-----
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYP-----  396 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p-----  396 (478)
                      .++.+++.++.++++||+|||+.+..+..+..+..+...... +.+..........+.....++..+.+.+|..|     
T Consensus       267 ~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  346 (437)
T TIGR00792       267 IVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWK  346 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            567788899999999999999988777655444333332222 22222222222222222334556777777754     


Q ss_pred             --cChhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc
Q 011756          397 --TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  429 (478)
Q Consensus       397 --~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~  429 (478)
                        .+.+|+..|+.+.+.++|+.+++.+.+.+.+..
T Consensus       347 ~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       347 TGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              567899999999999999999999988876543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.76  E-value=1.1e-14  Score=144.79  Aligned_cols=330  Identities=10%  Similarity=-0.028  Sum_probs=178.2

Q ss_pred             HHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH--------------H----HHHHHHHHHH-HHHHhhhchHHHHHHH
Q 011756           44 MILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS--------------I----LGGALVTFVA-GLLSAFSPNYISLLIL  104 (478)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~--------------~----~~~~~~~~i~-~~~~~~a~~~~~l~~~  104 (478)
                      .......|...+|++.+..+.|++.+++.++...              .    ....+...+. ......++|++.+++.
T Consensus        21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  100 (382)
T PRK11128         21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVA  100 (382)
T ss_pred             HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            3334445666788899999999999998765333              0    0001111111 1223346889999999


Q ss_pred             HHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhc
Q 011756          105 RGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM  183 (478)
Q Consensus       105 R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~l  183 (478)
                      |++.|++.+.. +...++..++  +++|++..+.......+|..++|.++..+.+++|||..|++.++..++..+...+.
T Consensus       101 ~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  178 (382)
T PRK11128        101 IGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLR  178 (382)
T ss_pred             HHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHcc
Confidence            99999877654 3334444454  45678888888888889999999999998888999999988776544443333344


Q ss_pred             CCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccC-
Q 011756          184 PESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-  262 (478)
Q Consensus       184 pESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  262 (478)
                      ||.++    +++.+                              ++   ..+                 ...++++.++ 
T Consensus       179 ~~~~~----~~~~~------------------------------~~---~~~-----------------~~~~~~~i~~~  204 (382)
T PRK11128        179 PTIMP----QGESR------------------------------QQ---ESA-----------------GWPAWKALLKE  204 (382)
T ss_pred             CCCCC----ccccc------------------------------cc---ccc-----------------ccchHHHHHcC
Confidence            54311    00000                              00   000                 0001222333 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 011756          263 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR  342 (478)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GR  342 (478)
                      |+.++-.....+.....    .+...+.+.+..+.+         .+.....  ....+..+..+++....+++.||+|+
T Consensus       205 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~g---------~s~~~~g--~~~~~~~~~~~~~~~~~g~l~~r~~~  269 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSH----AAYYGFSAIYWQAAG---------YSASTIG--YLWSLGVVAEVLIFAFSNRLFRRWSA  269 (382)
T ss_pred             hhHHHHHHHHHHHHHHh----HhHHHHHHHHHHHCC---------CCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            33332222122221111    111111111111111         0011111  11223445677788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHh-HhHhHHHHH
Q 011756          343 KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLV  421 (478)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~-lg~~~~p~~  421 (478)
                      |+.+..+....++..+......+.+......+...+......+....+..+. |.+.+++..++.+...+ +|..++|.+
T Consensus       270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i  348 (382)
T PRK11128        270 RDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL  348 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998777665555443333333333222222222111111223344555565 55567888998775544 566889999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHH
Q 011756          422 AVGLVTSCHQTAAILLLEALIVLSV  446 (478)
Q Consensus       422 ~~~l~~~~~~~~~~~~~~~~~~i~~  446 (478)
                      .+.+.+..+. ..++..+++.+++.
T Consensus       349 ~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        349 SGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHhccH-HHHHHHHHHHHHHH
Confidence            8888877653 34555555544443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.74  E-value=9e-16  Score=150.38  Aligned_cols=163  Identities=15%  Similarity=0.198  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcch-hhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSE-ESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .+....++.|.+|.+.+-  |...+++.|.+.+|+|+|++| .|.+.+.++.|+.+                 +..+.+.
T Consensus        24 ~W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~  101 (511)
T TIGR00806        24 SWRVLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS  101 (511)
T ss_pred             chhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            455567778888866553  667889999999999999999 99999999888766                 5667788


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRW  164 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~  164 (478)
                      +++.+++.++++++..|.+.|++.|++.|+......++..|+|+++|+++.+++..+..+|.+++++++.. +..+|||+
T Consensus       102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~  180 (511)
T TIGR00806       102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWIS  180 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchh
Confidence            89999999999999999999999999999887667889999999999999999999999999999999888 55689999


Q ss_pred             HHHHhhH---HHHHHHHHHHhcCCCch
Q 011756          165 LLALSAI---PAFVLLIFIVFMPESPR  188 (478)
Q Consensus       165 ~f~i~~i---~~~l~~~~~~~lpESP~  188 (478)
                      .+-...+   ...+.+++-+++|-.+|
T Consensus       181 y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       181 YSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            7755533   33334566778885544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.74  E-value=6.6e-15  Score=148.44  Aligned_cols=133  Identities=12%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             HHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhH
Q 011756          322 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  401 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~  401 (478)
                      ..+...++.+..+++.||+|||+.+..+..+.++.........+.+......................+.+|.+|.+.|+
T Consensus       271 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a  350 (420)
T PRK09528        271 QVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA  350 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee
Confidence            34556788999999999999999877766555443333333333332222111111111112233456788999999999


Q ss_pred             HHHHH-HHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccc
Q 011756          402 TGAGV-AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  454 (478)
Q Consensus       402 ~~~g~-~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~p  454 (478)
                      ++.+. .+..+.+|++++|.+.+.+.+..+....+...+++.+++.++.++..+
T Consensus       351 ~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        351 TIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             eeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            98776 456678999999999998888766666777777776666655555543

>PTZ00207 hypothetical protein; Provisional

Probab=99.72  E-value=1.2e-14  Score=148.99  Aligned_cols=180  Identities=17%  Similarity=0.166  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHH-HHHHHH---------------HHHHHHHHH
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVV-FAGMMS---------------ILGGALVTF   86 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~-~~G~~~---------------~~~~~~~~~   86 (478)
                      .++|.+++...+...+.+. .+..+...|.+++++|++..+.+++.+.. ..|...               +..+.+++.
T Consensus        24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            4555555544443333333 34556777899999999999998887763 222211               566777888


Q ss_pred             HHHHHHhhh------chHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011756           87 VAGLLSAFS------PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI  159 (478)
Q Consensus        87 i~~~~~~~a------~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~  159 (478)
                      ++.++++++      ++++++++.|++.|+|.+... .....+.+++| ++||++.++...+..+|..+.+.+...+.. 
T Consensus       103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-  180 (591)
T PTZ00207        103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-  180 (591)
T ss_pred             HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            888888887      689999999999999977653 34456788986 789999999999999999865554443332 


Q ss_pred             cchHHHHHHhhHHHHHH-HHHHH--hcCCCchhhhhcCChhHHHHHHHH
Q 011756          160 LTWRWLLALSAIPAFVL-LIFIV--FMPESPRYLCTKGRITDAHNILDK  205 (478)
Q Consensus       160 ~~WR~~f~i~~i~~~l~-~~~~~--~lpESP~~l~~~~~~~~a~~~l~~  205 (478)
                      .+|+..|++.++.+++. ++...  ..||+|+|..+++|.+|+++..++
T Consensus       181 ~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~  229 (591)
T PTZ00207        181 DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRL  229 (591)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHh
Confidence            47888887777655544 33333  357888887777666666665433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.3e-15  Score=154.59  Aligned_cols=406  Identities=17%  Similarity=0.165  Sum_probs=228.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      |-|-|.+++.+++..++..--....+...+.++++++-+..+.+|+.|+.......                 .+.+.++
T Consensus        41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v  120 (509)
T KOG2504|consen   41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV  120 (509)
T ss_pred             CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence            56777777666665544433345556678889999999999999999987543222                 5667778


Q ss_pred             HHHHHHHHhhhchHHHHHHH-HHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 011756           85 TFVAGLLSAFSPNYISLLIL-RGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW  162 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~-R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W  162 (478)
                      ..++.+++.++++++++++. =++.|+|.|..+ +....+..++ +|+|+.++++...+.++|.++-+.+.-.+.+..||
T Consensus       121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~  199 (509)
T KOG2504|consen  121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGW  199 (509)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCc
Confidence            88888999999999877655 456778888754 3334445454 77899999999999999999999998888899999


Q ss_pred             HHHHHHhhHHHHHHHHH-HHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCC---CCccc
Q 011756          163 RWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST---SEETP  238 (478)
Q Consensus       163 R~~f~i~~i~~~l~~~~-~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  238 (478)
                      |+.+++.+...+-.++. ...-|.+|+-.  +. .++..+.       ...+.+..+...+.+...+.....   .+...
T Consensus       200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (509)
T KOG2504|consen  200 RGALLIFGGISLNVLVAGALLRPLSPPKK--PN-EEKDLRN-------SAASVESTPKPVELRISERDSGLKKLSLSNLA  269 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCCC--ch-hhhhhcc-------ccccccccccccccccccCCCCCCcccccchh
Confidence            99999888766555443 34445444421  11 1111111       000000000000000000000000   00000


Q ss_pred             ccccccccccccccccchhhcccCcchHH-HHH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhH
Q 011756          239 LLSSARKRTTVRKSGFSSFLMLFSPRFFK-TTI-LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVY  316 (478)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (478)
                      ..+.  .++.....+.+....++..+..+ +.. ..........+.++-+..+.+....+.           ...+....
T Consensus       270 ~~~~--~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~-----------g~~~~~aa  336 (509)
T KOG2504|consen  270 TLKR--GPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSL-----------GLSSNDAA  336 (509)
T ss_pred             hhhh--CCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCChhhhH
Confidence            0000  00000000000000011111111 111 122222233334444444444443211           12223333


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHhhhchH--HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhh-hhhhhccc
Q 011756          317 INVFITSFAELPGLLTAALLVDRVGRK--LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFI-IANIFAPE  393 (478)
Q Consensus       317 ~~~~~~~~~~~~g~~~~~~l~dr~GRr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~E  393 (478)
                      ....+.++..++|.++.|++.|+-..|  .....+.+++++..+......+..... .......+..|.+. .......|
T Consensus       337 ~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~-~~~~~fG~~~g~~~~l~~~i~~~  415 (509)
T KOG2504|consen  337 FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLI-VFSILFGFCVGSFSSLTPVILVD  415 (509)
T ss_pred             HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566778899999999999998743  344455555555443333333322211 22222223334333 34568889


Q ss_pred             ccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHHhc
Q 011756          394 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       394 ~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      +.+++.-+.+.|+...+.-++..++|.+.+.+.+..+. ...+...+++.+++.++.++.
T Consensus       416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            99999999999999999999999999999977776653 345556666666665554444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.70  E-value=1e-15  Score=160.78  Aligned_cols=157  Identities=16%  Similarity=0.201  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 011756           30 AYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLS   92 (478)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~   92 (478)
                      +.+.+..+....+....+.+.|+++++|++++.+.|++.|.+.+|..+                 +..+.+++++++++.
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            444567788888889999999999999999999999999998887655                 333556667777666


Q ss_pred             hhhc---------------------------------------------------hHHHHHHHHHHhhcccCchh-hHHH
Q 011756           93 AFSP---------------------------------------------------NYISLLILRGLAGAGLGSGH-VFFS  120 (478)
Q Consensus        93 ~~a~---------------------------------------------------~~~~l~~~R~l~Gig~g~~~-~~~~  120 (478)
                      ++..                                                   .+..++++|+++|+|.+... ...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            5542                                                   25678899999999998864 5678


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------------chHHHHHHhhHHHHHHHH
Q 011756          121 WFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL----------------------TWRWLLALSAIPAFVLLI  178 (478)
Q Consensus       121 ~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~----------------------~WR~~f~i~~i~~~l~~~  178 (478)
                      |+.|++|+++|++..+++.....+|..++++++..+...+                      +||..|.+.++.+++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887765321                      378888888887777666


Q ss_pred             HHHhcCCC
Q 011756          179 FIVFMPES  186 (478)
Q Consensus       179 ~~~~lpES  186 (478)
                      ..+++||.
T Consensus       276 ~l~~~p~~  283 (633)
T TIGR00805       276 PFFFFPKA  283 (633)
T ss_pred             HHHhCccc
Confidence            66677765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.69  E-value=2e-13  Score=136.62  Aligned_cols=339  Identities=13%  Similarity=0.098  Sum_probs=175.7

Q ss_pred             HHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHH---HHhhh-----chHHHHHHH
Q 011756           50 GPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGL---LSAFS-----PNYISLLIL  104 (478)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~---~~~~a-----~~~~~l~~~  104 (478)
                      .+.+.+++|+++.+.|++.+...++..+                 ++.+.....++..   ...++     +.+..+.+.
T Consensus        26 ~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (396)
T TIGR00882        26 PIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVG  105 (396)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3345677899999999999988765444                 2222222222111   11111     223456777


Q ss_pred             HHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHh-
Q 011756          105 RGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVF-  182 (478)
Q Consensus       105 R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~-  182 (478)
                      |++.|++.+.. +....+..|..+  ++++..+......++|..+++.++..+. ..+||.+|++.++..++..+..+. 
T Consensus       106 ~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       106 GLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             HHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHh
Confidence            88888887764 334455555433  3344555555666788888888877654 469999999988777665444443 


Q ss_pred             cCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccC
Q 011756          183 MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS  262 (478)
Q Consensus       183 lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (478)
                      .||+|+.       ++.++           +.             +.   +.++.               +.++..++++
T Consensus       183 ~~~~~~~-------~~~~~-----------~~-------------~~---~~~~~---------------~~~~~~~~l~  213 (396)
T TIGR00882       183 KPKAPSS-------ATVAN-----------AL-------------GA---NASAF---------------SLKLALELFR  213 (396)
T ss_pred             CCCCchh-------hhhhc-----------cc-------------cc---ccCCC---------------CHHHHHHHHc
Confidence            4554431       00000           00             00   00000               0012223333


Q ss_pred             -cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 011756          263 -PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVG  341 (478)
Q Consensus       263 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~G  341 (478)
                       |+.+....    ..+.....+.....+.+.+.....       ..........-....+..+...++....+++.||+|
T Consensus       214 ~~~~~~~~l----~~~~~~~~~~~~~~~~~~y~~~~~-------~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g  282 (396)
T TIGR00882       214 QRKFWMFVL----YVVGVACVYDVFDQQFANFFTSFF-------ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIG  282 (396)
T ss_pred             CCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc-------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             32222111    111111111111111111110000       000000011111223344556777888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHH-HHHHHhHhHhHHHH
Q 011756          342 RKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGV-AYAVGRIGGMVCPL  420 (478)
Q Consensus       342 Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~-~~~~~~lg~~~~p~  420 (478)
                      ||+.+..+..+.++.........+.+......................+..|..|++.|+++.+. .+....+|+.++|.
T Consensus       283 ~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~  362 (396)
T TIGR00882       283 AKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLST  362 (396)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence            99988776655544333323222332222222221111111122344567788999999998877 46678899999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 011756          421 VAVGLVTSCHQTAAILLLEALIVLSVVVILL  451 (478)
Q Consensus       421 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  451 (478)
                      +.+.+.+..+....+.+.+++.++..++..+
T Consensus       363 l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       363 LAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999888766667777777776666655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.68  E-value=3.4e-13  Score=137.55  Aligned_cols=375  Identities=17%  Similarity=0.150  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHh
Q 011756           31 YSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSA   93 (478)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~   93 (478)
                      .+++.+....+-....+-+.+.+..|.|-+ ++.+|+.+...++...                 ++++.++..++++.++
T Consensus        48 ~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   48 AFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence            344555545555555556678888898854 5666766665554333                 6778888899999999


Q ss_pred             hhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHH
Q 011756           94 FSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPA  173 (478)
Q Consensus        94 ~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~  173 (478)
                      .++|...++++-.+.|+|.|........++|..|.|+|+...++...........++.++..+..+.+|||.|++.++..
T Consensus       127 tA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~  206 (599)
T PF06609_consen  127 TAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS  206 (599)
T ss_pred             cCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence            99999999999999999987765444457999999999988777666655555566777766666779999999988765


Q ss_pred             HHHHHHHHhcCCCchhhhhcCChh---HHHHHHHHHHHHcC----------CCCCCCCCCCCCCCCcccccCCCCccccc
Q 011756          174 FVLLIFIVFMPESPRYLCTKGRIT---DAHNILDKIAQFNQ----------TSLPSGNLTSDGTNDLDEEFSTSEETPLL  240 (478)
Q Consensus       174 ~l~~~~~~~lpESP~~l~~~~~~~---~a~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (478)
                      .+.++...+.-..|++-..+++..   |..+.++.+...--          -...-.  ..+.+.+.+      .-....
T Consensus       207 ~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~--~~~~W~Sa~------VIa~lv  278 (599)
T PF06609_consen  207 GIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGY--PYYPWKSAH------VIAPLV  278 (599)
T ss_pred             HHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCcc------chhhHH
Confidence            554433322223344433333322   22222222211000          000000  000000000      000000


Q ss_pred             c------cc-ccccc-ccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccc
Q 011756          241 S------SA-RKRTT-VRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQD  312 (478)
Q Consensus       241 ~------~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  312 (478)
                      .      .. ..+.. ..+++..+.+.+.++   |......+..+...+.||+...+-|....+..  .+...   ....
T Consensus       279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf--~~d~~---~~~~  350 (599)
T PF06609_consen  279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR---RGFAALLVISFISGMNFFSVNILWPQQVVNVF--GSDPI---SITE  350 (599)
T ss_pred             HHHHHHHHHHHhhhhccCCCCcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCc---ccce
Confidence            0      00 00000 112233333222222   22222233334455556665443333221100  00000   0000


Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhhhh
Q 011756          313 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-IMFIFVCIFLLPLVT--LQSNILLTALLSGARMFSMGTFIIANI  389 (478)
Q Consensus       313 ~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~  389 (478)
                      ..  ......+++...|.++.+.+..+++|-|..+ .+.....+++-.+..  .++......+.++..+...+...+...
T Consensus       351 ~~--~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~  428 (599)
T PF06609_consen  351 IG--WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV  428 (599)
T ss_pred             ee--hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence            11  1112334455667777888888888766543 443333322222222  122222222333333322233334556


Q ss_pred             hcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHH
Q 011756          390 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  424 (478)
Q Consensus       390 ~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~  424 (478)
                      ...-..|.+.-+++.|+..++..+|+.++..+...
T Consensus       429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            66667899999999999999999988888665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.66  E-value=1.4e-12  Score=130.11  Aligned_cols=347  Identities=12%  Similarity=0.001  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHH--HHHHHHHHH------------------H-HHHHHHHHH-
Q 011756           30 AYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLIT--TVVFAGMMS------------------I-LGGALVTFV-   87 (478)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--s~~~~G~~~------------------~-~~~~~~~~i-   87 (478)
                      ......++.++..........|..-+|.|.+.++.|.+.  ++....-..                  . +...+.... 
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~   83 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC   83 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence            345566788899988888888998899999999999974  222222111                  1 111111111 


Q ss_pred             HHHHHhh--hch-HHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Q 011756           88 AGLLSAF--SPN-YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWR  163 (478)
Q Consensus        88 ~~~~~~~--a~~-~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR  163 (478)
                      ...+..+  ..+ ...++..-++.++..... +....+..|..++++|+...+....+..+|.++++.....+.++.|||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~  163 (390)
T TIGR02718        84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR  163 (390)
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            1111111  222 223343333333333332 334456789989999999999998888999999998887778888999


Q ss_pred             HHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccc
Q 011756          164 WLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSA  243 (478)
Q Consensus       164 ~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (478)
                      ..|++.++..++..+..++++|+++     ++.++.                             +    .+        
T Consensus       164 ~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~~-----------------------------~----~~--------  197 (390)
T TIGR02718       164 PAFLLVACVPLASLVCVLWLKDRAV-----ASPEAP-----------------------------L----AR--------  197 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCc-----Cccccc-----------------------------h----hh--------
Confidence            9999998777665555555544321     000000                             0    00        


Q ss_pred             cccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHH-
Q 011756          244 RKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFIT-  322 (478)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (478)
                                ..+++++++++..+......+.+......+++.  ..+.+.+ .           +.+....-...... 
T Consensus       198 ----------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~~-~-----------G~s~~~ig~~~~~~~  253 (390)
T TIGR02718       198 ----------RASLFRFFRRPLAWSLLALALLSAMTAVSGFGL--SKLYLVD-A-----------GWPLEWIGRLGMAGG  253 (390)
T ss_pred             ----------HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHH--hhHHHHh-c-----------CCCHHHHHHHHhHHH
Confidence                      001122222222222222222221111122221  1122211 1           11111111111111 


Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHH-HHHHHHhh-----chhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCI-FLLPLVTL-----QSNILLTALLSGARMFSMGTFIIANIFAPEIYP  396 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p  396 (478)
                      ....+.|.+.++++.||+|+|+.+..+..+... ........     ..............+......+..+....+..+
T Consensus       254 ~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  333 (390)
T TIGR02718       254 AVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAG  333 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            234567788999999999999987766544322 11111111     011111111111111111222334455455555


Q ss_pred             c-ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 011756          397 T-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  446 (478)
Q Consensus       397 ~-~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  446 (478)
                      . +.|++.+++.++...+|..++|.+.+.+.+..+....+...+++.+++.
T Consensus       334 ~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       334 DGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            5 8999999999999999999999999988876655455555555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.63  E-value=1.6e-12  Score=133.62  Aligned_cols=167  Identities=14%  Similarity=0.006  Sum_probs=109.7

Q ss_pred             cccccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhhhhhcCCCcchhhHHHHHHHHH-------
Q 011756            3 LAIQRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILS-FVGPAVKSEWGLSSSEESLITTVVFAG-------   74 (478)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~s~~~~G-------   74 (478)
                      -|-|+++..+|-.+.+   ++.....   +.+..+++.+-...+. +..+.+++++|+++++.+++.+.+...       
T Consensus         3 ~~~~~~~~~~~~~~~~---~p~~~~~---~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~   76 (500)
T PRK09584          3 TANQKPTESVSLNAFK---QPKAFYL---IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAI   76 (500)
T ss_pred             CCCCCCCCCCChhhhc---CCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777766655542   2222222   2222233333333233 344456788999988877776654321       


Q ss_pred             --HHH---------HHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCC--chhHHHHHH
Q 011756           75 --MMS---------ILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFS  139 (478)
Q Consensus        75 --~~~---------~~~~~~~~~i~~~~~~~a~-~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~  139 (478)
                        ...         +..+.++..++..+.++++ +...++++|+++|+|.|.. +...+++.|++|+++  |+...+++.
T Consensus        77 ~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~  156 (500)
T PRK09584         77 GGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYY  156 (500)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHH
Confidence              111         4445556666667777764 5667788999999998875 344567899998754  445778888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHH
Q 011756          140 TFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFV  175 (478)
Q Consensus       140 ~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l  175 (478)
                      .+.++|..+++.++..+.++.|||+.|.+.++..++
T Consensus       157 ~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        157 MSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            999999999999999988889999999988754433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.62  E-value=2.5e-12  Score=131.45  Aligned_cols=143  Identities=15%  Similarity=0.081  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhHHhhhhhcCCCcchhhHHHHHHHHH-HHH-----------------HHHHHHHHHHHH
Q 011756           29 LAYSGLGWFSEAMEVMIL-SFVGPAVKSEWGLSSSEESLITTVVFAG-MMS-----------------ILGGALVTFVAG   89 (478)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~s~~~~G-~~~-----------------~~~~~~~~~i~~   89 (478)
                      +..+.+..+.+.+....+ ++....+++++|+++.+.+++.+.+... +..                 ++.+.+++.+++
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~   95 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY   95 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            333333334444443333 3444556788999999988887776421 111                 567777888888


Q ss_pred             HHHhhhchHHH-HHHHHHHhhcccCch-hhHHHHHhhccCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Q 011756           90 LLSAFSPNYIS-LLILRGLAGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWL  165 (478)
Q Consensus        90 ~~~~~a~~~~~-l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~  165 (478)
                      +.++++++... ++++|.++|+|.|.. +...+.+.|.+|++  +|++..+++..+.++|..+++.++..+.++.|||+.
T Consensus        96 ~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~  175 (489)
T PRK10207         96 FMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVT  175 (489)
T ss_pred             HHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence            88888877554 558999999999876 45567889999987  457788999999999999999999998888999999


Q ss_pred             HHHhhH
Q 011756          166 LALSAI  171 (478)
Q Consensus       166 f~i~~i  171 (478)
                      |++.++
T Consensus       176 F~i~~i  181 (489)
T PRK10207        176 YNLCGA  181 (489)
T ss_pred             HHHHHH
Confidence            998654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.62  E-value=1e-11  Score=126.86  Aligned_cols=143  Identities=15%  Similarity=0.064  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHhHHh-hhhh--cCCCcchhhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Q 011756           34 LGWFSEAMEVMILSFVGPA-VKSE--WGLSSSEESLITTVVFAGMMS------------------ILGGALVTFVAGLLS   92 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~--~~l~~~~~~~~~s~~~~G~~~------------------~~~~~~~~~i~~~~~   92 (478)
                      +..+.+.+-...+....|. ++++  +|+++.+.+++.+.+.++..+                  +..+.++..++.++.
T Consensus        17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~   96 (475)
T TIGR00924        17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML   96 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            4445555554444444444 4555  899999999998887654333                  455666667777777


Q ss_pred             hhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q 011756           93 AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL  168 (478)
Q Consensus        93 ~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i  168 (478)
                      ++++++..++++|.+.|+|.|.. +...++++|++|+++   |++..+++..+.++|..+++.++..+.++.|||+.|.+
T Consensus        97 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~  176 (475)
T TIGR00924        97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL  176 (475)
T ss_pred             HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            88888999999999999998875 455677889998765   88899999999999999999999988888899999988


Q ss_pred             hhHHHHHH
Q 011756          169 SAIPAFVL  176 (478)
Q Consensus       169 ~~i~~~l~  176 (478)
                      .++..++.
T Consensus       177 ~~~~~~~~  184 (475)
T TIGR00924       177 AAVGMVIG  184 (475)
T ss_pred             HHHHHHHH
Confidence            77544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.60  E-value=6.9e-12  Score=119.30  Aligned_cols=329  Identities=16%  Similarity=0.186  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH---hhh
Q 011756           36 WFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLS---AFS   95 (478)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~---~~a   95 (478)
                      .+.-++.........|.+++-|+++..|.+++...++.|+.+                 ++.+..++.+++.+-   +..
T Consensus        22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~  101 (422)
T COG0738          22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS  101 (422)
T ss_pred             HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344455555666788999999999999999999999988766                 566777777777655   355


Q ss_pred             chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC---------------
Q 011756           96 PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI---------------  159 (478)
Q Consensus        96 ~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~---------------  159 (478)
                      .+|..++++-|+.|.|.|.. ..+-+|++-..|++.-.+.+...+..+++|.+++|+++..+..+               
T Consensus       102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~  181 (422)
T COG0738         102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIK  181 (422)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHH
Confidence            68999999999999999974 45567888888888888889999999999999999998765431               


Q ss_pred             ----cchHHHHHHhhHHHHHHHHHHHh--cCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCC
Q 011756          160 ----LTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST  233 (478)
Q Consensus       160 ----~~WR~~f~i~~i~~~l~~~~~~~--lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (478)
                          ..||++|...+...+++.+....  +||-+.                                 +..   ++.   
T Consensus       182 ~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------------------------~~~---~~~---  222 (422)
T COG0738         182 GADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------------------------AAP---SLG---  222 (422)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc---------------------------------ccc---ccc---
Confidence                14777777666555544443322  222110                                 000   000   


Q ss_pred             CCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccch
Q 011756          234 SEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA  313 (478)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (478)
                       +         .     + .. ...++++.+..+.-.+..+++.+.....+.   |.+.+..+.          .+.++.
T Consensus       223 -~---------~-----~-~~-~~~~l~~~~~~~~gvl~~FlYVG~Eva~gs---fl~~y~~~~----------~g~~~~  272 (422)
T COG0738         223 -A---------S-----G-SA-GLSSLFQNKHLRLGVLAIFLYVGAEVAIGS---FLVSYLEEL----------LGLNEQ  272 (422)
T ss_pred             -c---------c-----c-cc-hHHHHHhChHHHHHHHHHHHHHhHHHHHHH---HHHHHHHhc----------CCccHH
Confidence             0         0     0 00 122333333333333333334433222221   111111110          011111


Q ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 011756          314 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPE  393 (478)
Q Consensus       314 ~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E  393 (478)
                      ..-........+..+|...+.++..|+...+.+....++..+.++......+..... ......++....++..+....+
T Consensus       273 ~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfslal~  351 (422)
T COG0738         273 QAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLALK  351 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHh
Confidence            111123344456788888888898999888887766655554444444444433222 2333344556678888999999


Q ss_pred             ccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHH
Q 011756          394 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL  436 (478)
Q Consensus       394 ~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~  436 (478)
                      ..| ++-..+.++ -.++-+||.+.|.+.+.+.+..+....+.
T Consensus       352 ~l~-~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         352 NLG-EHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             ccC-cccccccee-eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            999 444444443 34556889999999998877655433343

>TIGR00788 fbt folate/biopterin transporter

Probab=99.58  E-value=6e-13  Score=135.55  Aligned_cols=351  Identities=12%  Similarity=0.042  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH---------------------HHHHHHHHH
Q 011756           28 ALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS---------------------ILGGALVTF   86 (478)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~---------------------~~~~~~~~~   86 (478)
                      .+..+...++..|.-........|.+++++|++.++.+...++..+...+                     ++.+.++..
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~  106 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGS  106 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHH
Confidence            34455556778888744444556778888999999998888887655444                     233333331


Q ss_pred             -HHHHHHhhhchHHHHH-HHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Q 011756           87 -VAGLLSAFSPNYISLL-ILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF---WTFGSVSEAALAWIVMPIL  160 (478)
Q Consensus        87 -i~~~~~~~a~~~~~l~-~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~---~~~G~~~~~~~~~~~~~~~  160 (478)
                       +.....+..++..... +.+++.+++.+.. .+.-.++.|..+ ++++...+.....   ..+|.++++.+++.+.+..
T Consensus       107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~  185 (468)
T TIGR00788       107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT  185 (468)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2212223335544444 4888888887765 455678899998 5554433333333   3479999999888888888


Q ss_pred             chHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccc
Q 011756          161 TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLL  240 (478)
Q Consensus       161 ~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (478)
                      +||..|++.+...++..+...++||++.....+.+.++ .                         .......    ....
T Consensus       186 ~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~-------------------------~~~~~~~----~~~~  235 (468)
T TIGR00788       186 LTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL-E-------------------------MNMALLT----LGVL  235 (468)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhcccccccccccccccc-h-------------------------hhhhhhh----hhHH
Confidence            99999999887666666666778886421000000000 0                         0000000    0000


Q ss_pred             ccccccccccccccchhhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHH
Q 011756          241 SSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINV  319 (478)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (478)
                      +       ..++..++....++ |..++......+.       |.    ..+......... ..  ...+.+........
T Consensus       236 ~-------~~~~~~~~l~~~l~~~~i~~~l~fifl~-------~~----~~~~~~~~~f~~-~~--~~lG~s~~~~G~~~  294 (468)
T TIGR00788       236 A-------NVKVQILGLRGAIQLLEIAKPLIFIFLS-------YA----NLPGASGSVFCA-TT--QCLPGGPSFSGMSK  294 (468)
T ss_pred             H-------HHHHHHHHHHHHHhcHHHHHHHHHHHHH-------Hh----hcCCCCceeEEE-Ec--ccCCCCcchhhhHH
Confidence            0       00000111211222 2222111111110       00    000000000000 00  00111112222223


Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----h------chhHHHHHHHHHHHHHhhhhhhhhhh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----L------QSNILLTALLSGARMFSMGTFIIANI  389 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~g~~~~~~~  389 (478)
                      ...+++.++|..+.+...+|++.|+++..+..+..+..+....    .      .+............+.....+.....
T Consensus       295 ~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~  374 (468)
T TIGR00788       295 VVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLV  374 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHH
Confidence            3455778888888888889999999888877655543322110    0      01111111111111111122334578


Q ss_pred             hcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc
Q 011756          390 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  430 (478)
Q Consensus       390 ~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~  430 (478)
                      +..+..|.+.+++.+++.+++.++|..+++.+.+.+.+..+
T Consensus       375 ~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       375 LLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88899999999999999999999999999987776655544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.57  E-value=3.2e-11  Score=123.40  Aligned_cols=291  Identities=15%  Similarity=0.066  Sum_probs=171.9

Q ss_pred             chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHH
Q 011756           96 PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAF  174 (478)
Q Consensus        96 ~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~  174 (478)
                      .+.+.+++.-++.|++.+.. +.-.+.+-|..|+++...+++..+...++..++||.+++.+....|=.+.|.+.++.-+
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl  180 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL  180 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888999999999887765 44567789999999999999999999999999999999988777888888888876544


Q ss_pred             HHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccccccccccc
Q 011756          175 VLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF  254 (478)
Q Consensus       175 l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (478)
                      +........+..++    +.+ .+.++..+.                                 .              .
T Consensus       181 ~~i~~l~~~~~~~~----~~~-~~~e~~~~~---------------------------------l--------------~  208 (524)
T PF05977_consen  181 ISILALLRWKPPPP----PSS-LPRERFFSA---------------------------------L--------------R  208 (524)
T ss_pred             HHHHHHHHcccccc----ccc-cchhhhhhh---------------------------------H--------------H
Confidence            44333333322110    000 000000000                                 0              0


Q ss_pred             chhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHH
Q 011756          255 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAA  334 (478)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  334 (478)
                      ..++..++.+..+..++....+......++   ...|.+....          .+......-......+++++.|.++.+
T Consensus       209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~---aLlPl~a~~~----------l~~~a~~yGll~a~~gvGai~Gal~~~  275 (524)
T PF05977_consen  209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVW---ALLPLFARDV----------LGGGASGYGLLLAAFGVGAILGALLLP  275 (524)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHhhhHHH---HhhhHHHHHH----------hCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            012222222333333222221111111112   1223222100          011111111223455677788888888


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHh
Q 011756          335 LLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIG  414 (478)
Q Consensus       335 ~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg  414 (478)
                      .+.+|+++++++..+.+..++..+.+....+.+.....++..++..............+..|.++||+..++...+...+
T Consensus       276 ~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~  355 (524)
T PF05977_consen  276 RLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGG  355 (524)
T ss_pred             HhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHH
Confidence            88888888887777666666555555554444443333444333333444556778889999999999999999888888


Q ss_pred             HhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 011756          415 GMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  451 (478)
Q Consensus       415 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  451 (478)
                      ..++..+.+.+.+..+....+.+.++..+++.++.+.
T Consensus       356 ~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  356 MPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887777666555555544444455444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01272 gluP glucose/galactose transporter

Probab=99.55  E-value=7.3e-12  Score=120.53  Aligned_cols=274  Identities=12%  Similarity=0.073  Sum_probs=156.6

Q ss_pred             hhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc--------------
Q 011756           94 FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP--------------  158 (478)
Q Consensus        94 ~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~--------------  158 (478)
                      ...+|..+++.-|+.|.|.+.. .....|+++..|++++.+.+++.+..+.+|.+++|.++..+..              
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4678999999999999999875 5667899999999999999999999999999999999886552              


Q ss_pred             --CcchHHHHHHhhHHHHHHHHHHHh--cCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCC
Q 011756          159 --ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTS  234 (478)
Q Consensus       159 --~~~WR~~f~i~~i~~~l~~~~~~~--lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (478)
                        ..+||++|++.+....+..+...+  +||..+      ++++                           +..+. +..
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~---------------------------~~~~~-~~~  131 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA---------------------------RVSSG-DTT  131 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc---------------------------ccccc-ccc
Confidence              147999998665544444333333  455311      0000                           00000 000


Q ss_pred             CcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchh
Q 011756          235 EETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS  314 (478)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (478)
                      +               +     .+.+.++.    ..+..+..+.....--+...|.+.+......        .+.+...
T Consensus       132 ~---------------~-----~~~~~~~~----~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~--------~g~s~~~  179 (310)
T TIGR01272       132 Q---------------K-----TSAFQFTH----LVLGALGIFVYVGAEVSAGSFLVNFLSDPHA--------LGLPEDQ  179 (310)
T ss_pred             c---------------h-----hhHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------CCCCHHH
Confidence            0               0     00011111    1111111111111111222233322211000        0111111


Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          315 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       315 ~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      .-........+..+|.++++++.||+|+|+.+..+..++++..+............ ......++....++.......+.
T Consensus       180 a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~  258 (310)
T TIGR01272       180 AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLALNA  258 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            11123344456788999999999999999887766555544433222222221111 22223344445667777788888


Q ss_pred             cCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHH
Q 011756          395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL  436 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~  436 (478)
                      +|.+ .+++.++. .++.+|+.+.|.+.+.+.+..+...+++
T Consensus       259 ~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       259 LGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             hhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            8754 45666764 6788999999999888877665444554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.53  E-value=2.8e-11  Score=113.53  Aligned_cols=332  Identities=20%  Similarity=0.181  Sum_probs=200.1

Q ss_pred             HHHHHhHHhhhhhcCCCcchhhHHHHHHHHHH--HH---------------HHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 011756           44 MILSFVGPAVKSEWGLSSSEESLITTVVFAGM--MS---------------ILGGALVTFVAGLLSAFSPNYISLLILRG  106 (478)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~--~~---------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~  106 (478)
                      ..++..++.+++|+|+|.+..|++.++-.+-.  ..               +..+.++..++.++-... +...++.+-.
T Consensus        29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~  107 (395)
T COG2807          29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTL  107 (395)
T ss_pred             hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence            44556678899999999999999999875432  22               334444445555544433 6778899999


Q ss_pred             HhhcccCchhh-HHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHhhHHHHHHHHHHHhcC
Q 011756          107 LAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMP  184 (478)
Q Consensus       107 l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~WR~~f~i~~i~~~l~~~~~~~lp  184 (478)
                      +.|.|++...+ ..+++-|.+|+ +-|.+++.|....+.|..+++.++..+..+. +||....+-++|+++.++.++  |
T Consensus       108 l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl--P  184 (395)
T COG2807         108 LAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL--P  184 (395)
T ss_pred             HHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh--h
Confidence            99999887654 45678888865 5789999999999999999988887776665 799999999999987766543  4


Q ss_pred             CCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcc
Q 011756          185 ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR  264 (478)
Q Consensus       185 ESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (478)
                      ...|..    +  +                             +.    ..+          .       .+...+++.+
T Consensus       185 q~~r~~----~--~-----------------------------~~----~~~----------~-------~~~~~vw~~~  208 (395)
T COG2807         185 QALREQ----A--A-----------------------------SI----ATK----------L-------VSVRKVWRSP  208 (395)
T ss_pred             hccccc----c--c-----------------------------cc----ccc----------c-------ccccccccCc
Confidence            332210    0  0                             00    000          0       0001112111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhc-hH
Q 011756          265 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVG-RK  343 (478)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~G-Rr  343 (478)
                         ..+.+.+.+..++..||...-|.|.+....+           .+....-....+..+..++..+....+.+|.. +|
T Consensus       209 ---~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G-----------~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r  274 (395)
T COG2807         209 ---LAWQVTLFMGLQSLLYYIVIGWLPAILIDRG-----------LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR  274 (395)
T ss_pred             ---hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-----------CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence               1222333444578889999999988764322           11111122334556778899999999999764 44


Q ss_pred             HHHHHHHHHHHH--HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhccccc-CcChhHHHHHHHHHHHhHhHhHHHH
Q 011756          344 LSMTIMFIFVCI--FLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPL  420 (478)
Q Consensus       344 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~-p~~~R~~~~g~~~~~~~lg~~~~p~  420 (478)
                      +........+.+  +.+.+.-.+..+...   ........+.++..-.....-. ..+..+.-.|++..+|++-+..+|.
T Consensus       275 ~~~~~~~~~~l~G~~G~~~~P~~~~~lw~---~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~  351 (395)
T COG2807         275 PLVVLALLLMLVGLVGLLLAPGQLPILWA---LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW  351 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence            433322222211  111111111112221   1111112234444444444433 4466678889999999999999999


Q ss_pred             HHHHHhhccchh-HHHHHHHHHHHHHHHHHHhc
Q 011756          421 VAVGLVTSCHQT-AAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       421 ~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~  452 (478)
                      +++.+.+..+.. .....+..+.+...+..+..
T Consensus       352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         352 LFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             hHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            999998876643 34444455444444444443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.50  E-value=2.2e-10  Score=115.94  Aligned_cols=146  Identities=20%  Similarity=0.236  Sum_probs=98.4

Q ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHhhhchH--HHHHHHHHHHHH-HHHHHH-h------hchhHHHHHHHHHHHHHhhhh
Q 011756          314 SVYINVFITSFAELPGLLTAALLVDRVGRK--LSMTIMFIFVCI-FLLPLV-T------LQSNILLTALLSGARMFSMGT  383 (478)
Q Consensus       314 ~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr--~~~~~~~~~~~~-~~~~~~-~------~~~~~~~~~~~~~~~~~~~g~  383 (478)
                      ......++..+.+++|+++.+++.||+|-|  +++..+.....+ .+..+. .      .++.+...++......+..+.
T Consensus       318 ~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~  397 (477)
T PF11700_consen  318 QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGI  397 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhH
Confidence            344455677788999999999999999998  666554433322 121111 0      222333222322333333345


Q ss_pred             hhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHHhccccccCcc
Q 011756          384 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILLIPFETKGKE  460 (478)
Q Consensus       384 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~pet~g~~  460 (478)
                      ++..-++.+|+.|++..+.-+|+-...++..++++|.+++.+.+..+. ..++....++.+++.++ ++..++.||+.
T Consensus       398 qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l-l~~v~~~~g~~  474 (477)
T PF11700_consen  398 QSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL-LFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-Hhhccchhhhh
Confidence            666788999999999999999999999999999999999988777653 34555556665666544 45566777764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.48  E-value=3.4e-12  Score=131.25  Aligned_cols=158  Identities=18%  Similarity=0.087  Sum_probs=107.3

Q ss_pred             hHHh-hhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHH---HHHhhhchHHHHHHHHHH
Q 011756           49 VGPA-VKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAG---LLSAFSPNYISLLILRGL  107 (478)
Q Consensus        49 ~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~---~~~~~a~~~~~l~~~R~l  107 (478)
                      ..|. +++++|.+..+.++..+...+|..+                 +..+.+...+++   +....+++...++++|++
T Consensus       272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (490)
T PRK10642        272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM  351 (490)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3444 5567788877766665555544332                 222222222211   112234567888899999


Q ss_pred             hhcccCch-hhHHHHHhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHHHHHHhcC
Q 011756          108 AGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMP  184 (478)
Q Consensus       108 ~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~-~~WR~~f~i~~i~~~l~~~~~~~lp  184 (478)
                      .|++.+.. .....++.|.+|++.||+..++ ++.+...| .++|.+...+.+. .+|+.++++..+++++.++..+++|
T Consensus       352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p  430 (490)
T PRK10642        352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK  430 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            99876654 2445567899999999998886 56655444 5566665555443 4688888888888887777777889


Q ss_pred             CCchhhhhc-----CChhHHHHHHHHHH
Q 011756          185 ESPRYLCTK-----GRITDAHNILDKIA  207 (478)
Q Consensus       185 ESP~~l~~~-----~~~~~a~~~l~~~~  207 (478)
                      |||+|+.+|     ||.|||+++++|++
T Consensus       431 es~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        431 ETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             cccCCCCCCccccccchhhHHHHhhccc
Confidence            999999865     99999999999886

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.47  E-value=3.8e-11  Score=112.95  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=96.1

Q ss_pred             CcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchhhHHHHH
Q 011756           60 SSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWF  122 (478)
Q Consensus        60 ~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~  122 (478)
                      +....|.+.|++.++..+                 +..+++..++.-.+-++++|+..+++.|++.|+.-|...+..+++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii  145 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII  145 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence            445678889988776555                 455555556666778899999777778999999999887888899


Q ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-C-cchHHHHHH----hhHHHHH-HHHHHHhcCCCch
Q 011756          123 MEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-I-LTWRWLLAL----SAIPAFV-LLIFIVFMPESPR  188 (478)
Q Consensus       123 ~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-~-~~WR~~f~i----~~i~~~l-~~~~~~~lpESP~  188 (478)
                      +|+.++|+|++.++..++.+++|.++||.+++++.. . ..=+++|..    ..+.... ...+.+++||+-+
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            999999999999999999999999999999988654 1 111222333    2233333 3445678999933

>PRK09669 putative symporter YagG; Provisional

Probab=99.45  E-value=2.5e-10  Score=115.94  Aligned_cols=312  Identities=13%  Similarity=0.045  Sum_probs=161.2

Q ss_pred             HHhHHhhhhhcCCCcchhhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhhhch------H
Q 011756           47 SFVGPAVKSEWGLSSSEESLITTVVFAGMMS----------------------ILGGALVTFVAGLLSAFSPN------Y   98 (478)
Q Consensus        47 ~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~----------------------~~~~~~~~~i~~~~~~~a~~------~   98 (478)
                      .+..+...+++|+++.+.|.+.+..-+--.+                      ++.+.+...+...+....|+      +
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            4555667788999999988888776543222                      33444444444433333432      4


Q ss_pred             HHHHHHHHHhhcccCch-hhHHHHHhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHHHH----Hh---cCcchHHHHHHh
Q 011756           99 ISLLILRGLAGAGLGSG-HVFFSWFMEFV-PPSNRGKWMVVFSTFWTFGSVSEAALAWI----VM---PILTWRWLLALS  169 (478)
Q Consensus        99 ~~l~~~R~l~Gig~g~~-~~~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~----~~---~~~~WR~~f~i~  169 (478)
                      ..+++..++.+.+.... .+..++..|++ ++++|++..+.-.....+|..+++.+...    +.   +..+||..+.+.
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~  189 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM  189 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            55666666666544433 23446788988 55889998888877777777766554332    21   135799888877


Q ss_pred             hHHHHHHHHH-HHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccccc
Q 011756          170 AIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTT  248 (478)
Q Consensus       170 ~i~~~l~~~~-~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (478)
                      ++...+..+. .+..+|.++                          +     +       +    +++.+          
T Consensus       190 ~ii~~v~~~~~~~~~~e~~~--------------------------~-----~-------~----~~~~~----------  217 (444)
T PRK09669        190 GLLGVVLFFCCFFMTKERYT--------------------------P-----E-------V----DNSSS----------  217 (444)
T ss_pred             HHHHHHHHHHHhCCeEEecC--------------------------C-----C-------C----cCCCC----------
Confidence            7665554333 222333210                          0     0       0    00000          


Q ss_pred             ccccccchhhcccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhh
Q 011756          249 VRKSGFSSFLMLFSPRFFKTTILLWVL-YFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAEL  327 (478)
Q Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (478)
                          ..++++..++.+.++......+. ....... .+..   ..+...        .  ....+... .......+..+
T Consensus       218 ----~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~-~~~~---~y~~~~--------~--~~~~~~~~-~~~~~~~i~~i  278 (444)
T PRK09669        218 ----VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTR-GGAT---LYYVNY--------V--LLRPDLAT-LFLVTGMIAGL  278 (444)
T ss_pred             ----HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-hhhh---heeeee--------e--cCCHHHHH-HHHHHHHHHHH
Confidence                00123333333333222222111 1111110 0110   000000        0  00111111 11123335567


Q ss_pred             hHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhhhhhcccccC-------cC
Q 011756          328 PGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQSNILLTALLSGARMFSMGTFIIANIFAPEIYP-------TS  398 (478)
Q Consensus       328 ~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p-------~~  398 (478)
                      ++..+.+++.||+|||+.+..+.....+.......  ..+.+..........+......+..+...+|..+       .+
T Consensus       279 i~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r  358 (444)
T PRK09669        279 FGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRR  358 (444)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcC
Confidence            78888899999999999887665443322221111  1222222222222222223344567888888775       34


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  429 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~  429 (478)
                      ..|...|..+.+.++|..++|.+.+.+++..
T Consensus       359 ~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        359 LDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4577788888899999999998888776543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.42  E-value=2.6e-09  Score=107.70  Aligned_cols=364  Identities=17%  Similarity=0.115  Sum_probs=184.7

Q ss_pred             HHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhhhchHHHHH-
Q 011756           46 LSFVGPAVKSEWGLSSSEESLITTVVFAGMMS----------------------ILGGALVTFVAGLLSAFSPNYISLL-  102 (478)
Q Consensus        46 ~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~----------------------~~~~~~~~~i~~~~~~~a~~~~~l~-  102 (478)
                      .++..| +-+++|.+..+.+++.....+..++                      ++.+.+...++..+.++++++..++ 
T Consensus        24 ~~~l~~-yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~  102 (477)
T TIGR01301        24 LSLLTP-YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFG  102 (477)
T ss_pred             HHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcc
Confidence            344444 4467899888888887765443222                      2223444444445555666543221 


Q ss_pred             -----------HHHHHhhc-----ccCch-hhHHHHHhhccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh--cC--
Q 011756          103 -----------ILRGLAGA-----GLGSG-HVFFSWFMEFVPPSNR--GKWMVVFSTFWTFGSVSEAALAWIVM--PI--  159 (478)
Q Consensus       103 -----------~~R~l~Gi-----g~g~~-~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~~~~~~~~~~~--~~--  159 (478)
                                 +.+++.|+     +.... .+..+++.|.+|+++|  +.+.++.+....+|.++++.++....  ..  
T Consensus       103 ~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~  182 (477)
T TIGR01301       103 DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFP  182 (477)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence                       13444443     33322 2345678999999866  67899999999999999998886531  11  


Q ss_pred             -----------cchHHHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCc
Q 011756          160 -----------LTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  227 (478)
Q Consensus       160 -----------~~WR~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (478)
                                 .+-|..|.+.++..++. ++..+..+|.|...  .   +|..+                       ++.
T Consensus       183 ~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~---~~~~~-----------------------~~~  234 (477)
T TIGR01301       183 FTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--S---DDFIN-----------------------SEA  234 (477)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--c---ccchh-----------------------hhc
Confidence                       15788999888766655 44456688876310  0   00000                       000


Q ss_pred             ccccCCCCcccccccccccccccccccchhhcccCcchHHHH-HHHHHHHHHH-HHHHHHHHHHHHhhhCCCCCcccccc
Q 011756          228 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTT-ILLWVLYFGN-SFVYYGIVLLASELSGSQSKCSSSIL  305 (478)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~  305 (478)
                      ++..+..++...           ++-+++++++  |+..++. +...+.|++. .+.+|.......++...... .    
T Consensus       235 ~~~~~~~~~~~~-----------~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~-~----  296 (477)
T TIGR01301       235 APPSKHGEEAFF-----------GELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVN-Q----  296 (477)
T ss_pred             ccccccchhhhH-----------HHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCc-c----
Confidence            000000000000           0001111111  2222222 2222333321 11122222222222211110 0    


Q ss_pred             cccCccch---hhHHHHHHHHhhhhhHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHhhch----------------
Q 011756          306 LSENVQDA---SVYINVFITSFAELPGLLTAALLVDRVGR-KLSMTIMFIFVCIFLLPLVTLQS----------------  365 (478)
Q Consensus       306 ~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~l~dr~GR-r~~~~~~~~~~~~~~~~~~~~~~----------------  365 (478)
                       ...+.+.   .. ....+.++...+.+++...+.+|+|+ |+....+.++.++++....+..+                
T Consensus       297 -~~~y~~gvr~G~-~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~  374 (477)
T TIGR01301       297 -GAKYDDGVRAGA-FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLP  374 (477)
T ss_pred             -hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Confidence             0011111   11 11223333334455667778899985 66767776655555444332111                


Q ss_pred             -----hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh--HHHHHHHHHHHhHhHhHHHHHHHHHhhccch--hHHHH
Q 011756          366 -----NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ--TAAIL  436 (478)
Q Consensus       366 -----~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R--~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~--~~~~~  436 (478)
                           ......+....++.....++++|.+.+|..|.+.|  |.-+|+.|.+-.+..++.....+.+.+..+.  ...+.
T Consensus       375 ~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~  454 (477)
T TIGR01301       375 PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFV  454 (477)
T ss_pred             cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHH
Confidence                 01111112122222233456789999999996555  8889999998888777777666654444332  23445


Q ss_pred             HHHHHHHHHHHHHHhccccccC
Q 011756          437 LLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       437 ~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      +-++..+++.+..++.+|.++.
T Consensus       455 ~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       455 VGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC
Confidence            5556677888888888887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.38  E-value=1.4e-08  Score=100.88  Aligned_cols=111  Identities=17%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHH---HHHHhh-hhhhhhhhhcccc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNILLTALLSG---ARMFSM-GTFIIANIFAPEI  394 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~-g~~~~~~~~~~E~  394 (478)
                      .+..+.+++-....+++..|+|-|+++..+.....+=...+... ++.+........   ...... ..+.....+..|.
T Consensus       250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~  329 (400)
T PF03825_consen  250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI  329 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            35557788899999999999999999888877666544444433 232222221111   112222 2344567889999


Q ss_pred             cCcChhHHHHHHHHHHHh-HhHhHHHHHHHHHhhccc
Q 011756          395 YPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCH  430 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~-lg~~~~p~~~~~l~~~~~  430 (478)
                      .|.+.|++++++.+.+.. +|+.++..+.+.+.+..+
T Consensus       330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            999999999999888764 789999999998887754

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.1e-10  Score=110.61  Aligned_cols=130  Identities=18%  Similarity=0.236  Sum_probs=107.0

Q ss_pred             hcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchh-h
Q 011756           56 EWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-V  117 (478)
Q Consensus        56 ~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~  117 (478)
                      +.+-.+.+.|++.++..+-..+                 ++.+..++...+++-++.++|+++++.|.++|+|.+... .
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            3444566788887776432222                 777888888999999999999999999999999987654 4


Q ss_pred             HHHHHhhccCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhcCC
Q 011756          118 FFSWFMEFVPPS-NRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPE  185 (478)
Q Consensus       118 ~~~~~~E~~p~~-~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpE  185 (478)
                      ..+.+++.+|++ +||+++|+.-.+..+|.+++|+.++++.+..|.+.+|.+.++..++-....+++-|
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            567788999986 57999999999999999999999999988899999999999988887776666544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.29  E-value=4.6e-09  Score=106.19  Aligned_cols=313  Identities=20%  Similarity=0.195  Sum_probs=175.1

Q ss_pred             HHhHHhhhhhcCCCcchhhHHHHHHHH-HHHH---------------------HHHHHHHHHHHHHHHhhh-c-------
Q 011756           47 SFVGPAVKSEWGLSSSEESLITTVVFA-GMMS---------------------ILGGALVTFVAGLLSAFS-P-------   96 (478)
Q Consensus        47 ~~~~~~~~~~~~l~~~~~~~~~s~~~~-G~~~---------------------~~~~~~~~~i~~~~~~~a-~-------   96 (478)
                      .+..+-..+..++++...|.+....-+ +.+.                     ++.+.+...++..+.... |       
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            355556667778888777776665422 2221                     444555555554444444 3       


Q ss_pred             hHHHHHHHHHHhhcccCchh-hHHHHHhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhc----C---cchHHHHH
Q 011756           97 NYISLLILRGLAGAGLGSGH-VFFSWFMEFVP-PSNRGKWMVVFSTFWTFGSVSEAALAWIVMP----I---LTWRWLLA  167 (478)
Q Consensus        97 ~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~----~---~~WR~~f~  167 (478)
                      ....+.+.-++..++..... +..++..|.++ +++|.+..+.-+.+..+|.++.+.+...+.+    .   .+||+...
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            23345666666666555443 34567889998 5799999999888888888765555544332    1   27999998


Q ss_pred             HhhHHHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccc
Q 011756          168 LSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKR  246 (478)
Q Consensus       168 i~~i~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (478)
                      +.++..++..+ .....+|.++      +.++                              +    .++.+        
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~------~~~~------------------------------~----~~~~~--------  213 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSV------EVTE------------------------------Q----EKKIS--------  213 (428)
T ss_pred             HHHHHHHHHhhhhhheeeeccc------cccc------------------------------c----ccccc--------
Confidence            88877776644 4445666110      0000                              0    00000        


Q ss_pred             ccccccccchhhcccCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhh
Q 011756          247 TTVRKSGFSSFLMLFSPRFFKTTILLWV-LYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFA  325 (478)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (478)
                            -.+.++.+++.|.++......+ .+++.....-...++.....+..             ....  ....+..+.
T Consensus       214 ------~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-------------~~~~--~~~~~~~~~  272 (428)
T PF13347_consen  214 ------LRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-------------GLIS--IFMLIFFVA  272 (428)
T ss_pred             ------cccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-------------hhhH--HHHHHHHHH
Confidence                  0112334444333333322222 22222211111111111111100             0011  112344566


Q ss_pred             hhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc------
Q 011756          326 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPT------  397 (478)
Q Consensus       326 ~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~------  397 (478)
                      .+++..+.++++||+|||+.+..+..+.++..+.+....  +.+................+...+...+|+.+.      
T Consensus       273 ~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg  352 (428)
T PF13347_consen  273 SIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTG  352 (428)
T ss_pred             HHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcC
Confidence            788889999999999999998887776665544444332  333333333333333334456678888888763      


Q ss_pred             -ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          398 -SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       398 -~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                       +..|.-.|+.+...+++..+++.+.+.+++.
T Consensus       353 ~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  353 RRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             CCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence             4458888999999999999998887776544

>PRK11462 putative transporter; Provisional

Probab=99.28  E-value=1.8e-08  Score=102.71  Aligned_cols=126  Identities=17%  Similarity=0.138  Sum_probs=74.7

Q ss_pred             hhhhcCCCcchhhHHHHHH---------HHHHHH-------------HHHHHHHHHHHHHHHhhhch------HHHHHHH
Q 011756           53 VKSEWGLSSSEESLITTVV---------FAGMMS-------------ILGGALVTFVAGLLSAFSPN------YISLLIL  104 (478)
Q Consensus        53 ~~~~~~l~~~~~~~~~s~~---------~~G~~~-------------~~~~~~~~~i~~~~~~~a~~------~~~l~~~  104 (478)
                      ..+..|+++...|.+....         .+|.+.             ++.+.+...++..+.-..|+      ...+.+.
T Consensus        36 yt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~  115 (460)
T PRK11462         36 YTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAIT  115 (460)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            4455677777666655543         123333             44444444444444333332      3345555


Q ss_pred             HHHhhcccCchh-hHHHHHhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-------CcchHHHHHHhhHHHHH
Q 011756          105 RGLAGAGLGSGH-VFFSWFMEFVP-PSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-------ILTWRWLLALSAIPAFV  175 (478)
Q Consensus       105 R~l~Gig~g~~~-~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~WR~~f~i~~i~~~l  175 (478)
                      -++..++..... +..++..|.++ +++|.+..++-..+..+|..+++.+...+..       ..+|+....+.+++.++
T Consensus       116 ~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i  195 (460)
T PRK11462        116 YTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFM  195 (460)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence            555554444332 33456789988 7899999999999988888777666443221       14688887777776655


Q ss_pred             HHH
Q 011756          176 LLI  178 (478)
Q Consensus       176 ~~~  178 (478)
                      ...
T Consensus       196 ~~~  198 (460)
T PRK11462        196 MLA  198 (460)
T ss_pred             HHH
Confidence            543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.22  E-value=2.4e-09  Score=109.64  Aligned_cols=180  Identities=13%  Similarity=0.200  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH
Q 011756          265 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL  344 (478)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~  344 (478)
                      .++.....+..++......++.....|.+....+           .+............++..++.+..|+++||+|||+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~  102 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLN-----------LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY  102 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence            3445555555555555555555444444442221           11111111223444667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHH
Q 011756          345 SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  424 (478)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~  424 (478)
                      .+..+.++.++..+......+.....+..+...+ ..+.......+.+|.+|++.|+++.|+.+..+++|+.+++.+.+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~-~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~  181 (476)
T PLN00028        103 GSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGF-SLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL  181 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887766555544433333322222222222222 222233344567899999999999999998888888887766544


Q ss_pred             Hhh----c-----cchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          425 LVT----S-----CHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       425 l~~----~-----~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      +..    .     .++...+.+.+++.++..+..++++++.
T Consensus       182 i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~  222 (476)
T PLN00028        182 VFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL  222 (476)
T ss_pred             HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            321    1     2344566666766666655656554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.21  E-value=4.2e-08  Score=100.49  Aligned_cols=107  Identities=14%  Similarity=0.073  Sum_probs=65.4

Q ss_pred             HHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h-hch-hHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 011756          322 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T-LQS-NILLTALLSGARMFSMGTFIIANIFAPEIYP  396 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p  396 (478)
                      ..+..+++.++.+++.||+|||+.+..+..+..+..+...   . ..+ .+...+............+...+.+.+|..+
T Consensus       275 ~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id  354 (473)
T PRK10429        275 AGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVD  354 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3466788888999999999999988766554332222211   1 111 1221111112212222344556778888844


Q ss_pred             -----cCh--hHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          397 -----TSM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       397 -----~~~--R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                           +..  .|...|....+.+++..+++.+.+.+++.
T Consensus       355 ~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        355 YGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             hhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 434  46677888888999999999888877643

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.17  E-value=2.1e-07  Score=91.26  Aligned_cols=141  Identities=11%  Similarity=0.085  Sum_probs=94.2

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      .+..+.+.+...+..++.+|+|-|+.++++..+.++=........+.+.....-..-..-.........-|.++.+|++.
T Consensus       266 s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl  345 (412)
T PF01306_consen  266 SVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL  345 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH
Confidence            34456678889999999999999999888777766655544544444432222111111111122345678999999999


Q ss_pred             hHHHHHHHHHH-HhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcc
Q 011756          400 RSTGAGVAYAV-GRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  460 (478)
Q Consensus       400 R~~~~g~~~~~-~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~  460 (478)
                      .++...+...+ .+++..+.+.+.+.+.++.|...+|++++.+.+...++..+.++..+.+.
T Consensus       346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence            99999997544 56888888888899999887667888888888777777777765544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.17  E-value=1e-09  Score=91.87  Aligned_cols=133  Identities=18%  Similarity=0.186  Sum_probs=92.1

Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHH
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  403 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~  403 (478)
                      ++.+++....+++.||+|||+.+..+.....+..+......+.+.................+..+.+..|.+|++.|+++
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            34556778889999999999988776655554443333333332222222222222233345667888999999999999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          404 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       404 ~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      .++.+...+++..++|.+.+.+.+..+....+.+.+.+.+++.+..+++.|||
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999888776655555566677777777777777777764

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.16  E-value=2.5e-09  Score=96.68  Aligned_cols=102  Identities=13%  Similarity=0.031  Sum_probs=63.8

Q ss_pred             hhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHh-hchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHH
Q 011756          326 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LVT-LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  403 (478)
Q Consensus       326 ~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~  403 (478)
                      ..+-..+.|.++||.||+...+.+..+..+..=. +.+ ..+++..+.++-..  .. ......|...+-+.|.+.-|||
T Consensus       313 sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLs--ys-llAcslWP~va~~vpE~qLGTa  389 (459)
T KOG4686|consen  313 SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLS--YS-LLACSLWPCVASLVPEEQLGTA  389 (459)
T ss_pred             hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhh--HH-HHHHHHhhhhhhhCCHHHhcch
Confidence            3445677889999999999877655443322111 111 12333222222111  00 0011246667778888999999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHHhhccc
Q 011756          404 AGVAYAVGRIGGMVCPLVAVGLVTSCH  430 (478)
Q Consensus       404 ~g~~~~~~~lg~~~~p~~~~~l~~~~~  430 (478)
                      .|++.++.++|-.+.|++.+.+.+..+
T Consensus       390 ygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  390 YGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            999999999999999998887766544

>PRK09848 glucuronide transporter; Provisional

Probab=99.15  E-value=1.7e-07  Score=95.44  Aligned_cols=105  Identities=10%  Similarity=0.009  Sum_probs=65.3

Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc----
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPT----  397 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~----  397 (478)
                      ++.+++..+.+++.||+|+|+.+..+..+..+..+.+....  +.+.................+..+...+|..|.    
T Consensus       275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~  354 (448)
T PRK09848        275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL  354 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            44567788889999999999988877655444333222221  112111111112122223344556666676654    


Q ss_pred             ---ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          398 ---SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       398 ---~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                         +.+|...|+.+...++|..+++.+.+.+++.
T Consensus       355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4569999999999999999999887776543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.12  E-value=7.3e-09  Score=104.13  Aligned_cols=139  Identities=9%  Similarity=-0.031  Sum_probs=93.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++...+.+..+++.||+|||+.+..+.++..+..+......+.......-+...+...+.++....+.+|.+|++.
T Consensus        50 s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  129 (412)
T TIGR02332        50 TLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF  129 (412)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence            34445667788889999999999999887766655544443333332222222222222222234555678899999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhc------cchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTS------CHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~------~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      |+++.|+.+....+|..++|.+.+.+...      .++...+.+.++..++..++.+++.||++.
T Consensus       130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            99999999999899999999887766532      345566766666666655666667778763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.11  E-value=1.4e-07  Score=90.86  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=96.8

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 011756          313 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP  392 (478)
Q Consensus       313 ~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  392 (478)
                      .+.....+..++.+++|++..+++.||+|-|+++..+.++.....+...+...+.....+-.....+..+..+..-++.+
T Consensus       288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~  367 (438)
T COG2270         288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLA  367 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            44555667778889999999999999999998877776554433332222222211111111122223345667788999


Q ss_pred             cccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHhccccccCc
Q 011756          393 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLIPFETKGK  459 (478)
Q Consensus       393 E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~pet~g~  459 (478)
                      ++.|++.-+.-+|+-+..+|..++.+|++...+.+..+.. ..+..+..+.+++.+ .+...|+.+.+
T Consensus       368 ~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~~~~  434 (438)
T COG2270         368 RLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVPGRR  434 (438)
T ss_pred             HhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCCCCc
Confidence            9999999999999999999999999999988776665542 344455555556544 44444544333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.11  E-value=4.5e-09  Score=104.40  Aligned_cols=141  Identities=19%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .....++..++.++.|++.||+|||+.+..+..+..+..+......+.+......+...+......+....+..|.+|.+
T Consensus        46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  125 (385)
T TIGR00710        46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE  125 (385)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH
Confidence            34445667888899999999999999988876665554444333333322222222222222223455678889999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  459 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~  459 (478)
                      .|+++.|+.+....++..++|.+.+.+.+..++...+.+.+.+.++..+..++..||++.+
T Consensus       126 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       126 ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999888776665655666666666666666666667776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.10  E-value=1.2e-08  Score=101.89  Aligned_cols=137  Identities=12%  Similarity=0.066  Sum_probs=93.6

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ...++..++.++.+.++||+|||+.+..+..+.++..+......+.+.....-....+......+....+.+|.+|.+.|
T Consensus        63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~  142 (394)
T PRK10213         63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV  142 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence            44566677888999999999999998887776655444333333333222222222222223345667788899999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +.+.++......++..++|.+.+.+.+..++...+.+.+.+.++..+......||++
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999888777666666666666555555444444457754

>PRK10054 putative transporter; Provisional

Probab=99.09  E-value=5.8e-09  Score=104.26  Aligned_cols=136  Identities=13%  Similarity=0.082  Sum_probs=89.7

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ...++.+.+.+..|+++||+|||+.+..+.....+..+...+..+.+.................+....+.+|.+|++.|
T Consensus        51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  130 (395)
T PRK10054         51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK  130 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence            33456677888999999999999988877665554443333333322222211111111112234567788899999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +++.|+.+...++|..++|.+.+.+.. .++...+.+.+++.+++.+...++.||++
T Consensus       131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999998876654 45556666666666666555555555543

>TIGR00895 2A0115 benzoate transport

Probab=99.09  E-value=3.4e-09  Score=105.56  Aligned_cols=138  Identities=20%  Similarity=0.143  Sum_probs=93.2

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++.+++.++.++++||+|||+.+..+..+..+..+......+.+......+...+......+....+.+|.+|.+.
T Consensus        59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (398)
T TIGR00895        59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF  138 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence            34456678889999999999999999888766555444433333322222222222222222344567889999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+++.|+......+|+.++|.+.+.+.+..++...+.+.+++..+..++.+++.||+.
T Consensus       139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999998887766555545555554455555555566667764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.08  E-value=7.7e-09  Score=103.74  Aligned_cols=139  Identities=17%  Similarity=0.135  Sum_probs=92.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .....++..++.+..|+++||+|||+.+..+..+..+..+......+.+......+..........+....+.+|.+|++
T Consensus        56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  135 (406)
T PRK11551         56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR  135 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH
Confidence            34455677888999999999999999988876555444333333333222222222222222233455678889999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      .|+++.++.+....+|+.++|.+...+.+..++...+.+.+++.++..+...++.||++
T Consensus       136 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        136 LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999987665555444555566655555555555555567764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.08  E-value=7.8e-09  Score=104.70  Aligned_cols=167  Identities=17%  Similarity=0.227  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhh-chHHHHHHH
Q 011756          271 LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIM  349 (478)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-GRr~~~~~~  349 (478)
                      .+........+.+|+...+.+.+....          .+.+................++.+.+|+++||+ |||+.+.++
T Consensus        13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462         13 YVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            344444556667787766665443211          011112222222333355567888999999999 999998887


Q ss_pred             HHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHhhhhh-hhhhhhcccccCcC--hhHHHHHHHHHHHhHhHhHHHHHHHHH
Q 011756          350 FIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTF-IIANIFAPEIYPTS--MRSTGAGVAYAVGRIGGMVCPLVAVGL  425 (478)
Q Consensus       350 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-~~~~~~~~E~~p~~--~R~~~~g~~~~~~~lg~~~~p~~~~~l  425 (478)
                      .....+..+.+.... ............ ....|.. +....+.+|.||++  .|.++.++.+..+++|+.++|.+.+.+
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li-~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAII-VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHH-HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            766554333322211 111111111111 1122222 34567889999986  799999999999999999999999988


Q ss_pred             hhccchhHHHHHHHHHHHHHHHH
Q 011756          426 VTSCHQTAAILLLEALIVLSVVV  448 (478)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~i~~~~  448 (478)
                      .+..++...|.+.++..+++.+.
T Consensus       162 ~~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        162 QEEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HhhhChHHHHHHHHHHHHHHHHH
Confidence            77666656666544444444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.07  E-value=1.5e-06  Score=88.32  Aligned_cols=140  Identities=11%  Similarity=0.054  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHhHHh-hhhhcCCCcchhhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhh
Q 011756           34 LGWFSEAMEVMILSFVGPA-VKSEWGLSSSEESLITTVVFAGMMS------------------ILGGALVTFVAGLLSAF   94 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~------------------~~~~~~~~~i~~~~~~~   94 (478)
                      +..+.+.+-...+....|. +.+++|+++.+.+.+.+.+.+....                  ++.+.++..++.++.+.
T Consensus        16 ~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~   95 (493)
T PRK15462         16 ALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA   95 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444 4667899999988887776543221                  34444455555444443


Q ss_pred             hc-hHHHHHHHHHHhhcccCch-hhHHHHHhhccCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhh
Q 011756           95 SP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSA  170 (478)
Q Consensus        95 a~-~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~  170 (478)
                      .+ +...++++-.+.++|.|.. +...+++.|.+|++  +|....++.....++|..++|.++..+.++.|||+.|.+.+
T Consensus        96 ~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaa  175 (493)
T PRK15462         96 SEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAA  175 (493)
T ss_pred             hhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence            32 2223343333444455543 33456789999986  78889999999999999999999999888899999999876


Q ss_pred             HHH
Q 011756          171 IPA  173 (478)
Q Consensus       171 i~~  173 (478)
                      +..
T Consensus       176 igm  178 (493)
T PRK15462        176 VGM  178 (493)
T ss_pred             HHH
Confidence            533

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.06  E-value=9.1e-09  Score=102.74  Aligned_cols=140  Identities=15%  Similarity=0.080  Sum_probs=94.6

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++...+.+..|+++||+|||+.+..+.....+.........+........+.........+...+.+..|.+|.+.
T Consensus        45 ~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~  124 (392)
T PRK10473         45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR  124 (392)
T ss_pred             HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence            34445667788999999999999999887766555444333332222222221222222222234556788899999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  459 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~  459 (478)
                      |+++.++.+....++..++|.+...+.+..++...+.+.+++.++..++.++..||++.+
T Consensus       125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            999999999999999999998877665555555666677776666666666667777543

>PRK10504 putative transporter; Provisional

Probab=99.06  E-value=1.6e-08  Score=103.70  Aligned_cols=180  Identities=11%  Similarity=0.014  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHH
Q 011756          267 KTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM  346 (478)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~  346 (478)
                      +..+.++..++...+..+....+.|.+....+           .+............++...+.++.|+++||+|||+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~   78 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLG-----------ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF   78 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            34444555555555555555555555442211           1111111122333455677889999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHh
Q 011756          347 TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  426 (478)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~  426 (478)
                      ..+..+.++..+......+............+......+....+..|.+|.+.|+++.|+.+..+.+|..++|.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         79 FTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            87665554433333332222222222222222222234556778889999999999999999999999999999988887


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          427 TSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       427 ~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +..++...+.+...+..++.+......|+.+
T Consensus       159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        159 EYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7666556666666555666666666656543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.06  E-value=1.5e-08  Score=107.63  Aligned_cols=107  Identities=17%  Similarity=0.127  Sum_probs=76.3

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++.++|.+++|+++||+|||+.++++.++.++..+...+..+.+...+.-++..+...+..+..+.+.+|.+|.+.
T Consensus       209 s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~  288 (742)
T TIGR01299       209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK  288 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            34457788999999999999999999888766555444433333222222222233333333445678999999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHh
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLV  426 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~  426 (478)
                      |++..++...+..+|+++++.+...+.
T Consensus       289 Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       289 RGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998887665544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.06  E-value=1.9e-08  Score=98.42  Aligned_cols=138  Identities=19%  Similarity=0.116  Sum_probs=93.7

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|+++||+|||+.+..+..+.++..+...+..+.+......+..........+....+..|.+|.+.
T Consensus        39 ~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~  118 (352)
T PF07690_consen   39 SAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE  118 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhh
Confidence            44556678889999999999999998887776665553322222333322222233333333445667889999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+++.|+.+....+|..++|.+.+.+.+..++...+++.+++.++..++..++.++.+
T Consensus       119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP  176 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred             hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence            9999999999999999999998887765555556677777777777665444444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.04  E-value=5.3e-09  Score=103.83  Aligned_cols=139  Identities=14%  Similarity=0.133  Sum_probs=96.2

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|+++||+|||+.+..+..+.++.........+.+......+...+......+....+.+|.+|++.
T Consensus        36 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  115 (399)
T TIGR00893        36 SAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE  115 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH
Confidence            44556678888999999999999998887766555444433333332222222222222223344566789999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      |+++.++......+|..++|.+.+.+.+..++...+.+.+++.++..+..++..||++.
T Consensus       116 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       116 RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            99999999999999999999988877666665566666666666666666666666543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.04  E-value=1.4e-08  Score=101.81  Aligned_cols=139  Identities=19%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.++.|.++||+|||+.+..+.....+..+......+.+......+..........+..+.+..|.+|++.
T Consensus        55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  134 (406)
T PRK15402         55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD  134 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence            34456677888999999999999999887766555544433333322222222122211111223456777889999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      |.++.++......++..++|.+.+.+.+..++...+.+.+++.++..+..++..||++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99999999888888889999887777665555566777777766666666666788754

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.03  E-value=2.6e-08  Score=102.74  Aligned_cols=164  Identities=19%  Similarity=0.197  Sum_probs=100.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhch
Q 011756          263 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR  342 (478)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GR  342 (478)
                      ++.++....+++.++.+.+.+.......|.+....+           .+............++..++.+..|+++||+||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~   84 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFG-----------LTTVQAASLISAAFISRWFGGLLLGAMGDRYGR   84 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            334444444555555555555544444454432211           111111222334456678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHH
Q 011756          343 KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA  422 (478)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~  422 (478)
                      |+.+..+..+.++..+......+.+......+...+...+.++....+..|.+|.+.|+++.++.+....+|+.++|.+.
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888776655544443333333322222222222223334556678889999999999999999999999999999988


Q ss_pred             HHHhhccchhHHHHH
Q 011756          423 VGLVTSCHQTAAILL  437 (478)
Q Consensus       423 ~~l~~~~~~~~~~~~  437 (478)
                      +.+.+..++...+.+
T Consensus       165 ~~l~~~~~w~~~f~~  179 (496)
T PRK03893        165 SLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHhccCCHHHHHHH
Confidence            877665554444443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.03  E-value=2.5e-08  Score=99.62  Aligned_cols=137  Identities=17%  Similarity=0.122  Sum_probs=87.5

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|+++||+|||+.+..+..+..+..+......+.+......+.......+.++....+..|.+|.+.
T Consensus        54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  133 (405)
T TIGR00891        54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL  133 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence            34456678889999999999999999887766555444433333332222222222222222344556778889999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH--QTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+++.|+.+....+|..++|.+...+.+..+  +...+.+.+...++ .++.....||++
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~  192 (405)
T TIGR00891       134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAE  192 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            9999999999999999999988776665443  33344433333333 333444457754

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.02  E-value=2.1e-08  Score=100.87  Aligned_cols=138  Identities=12%  Similarity=0.050  Sum_probs=94.1

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      +..++...+.+..|+++||+|||+.+..+..+.++..+......+.....+.-+.............+.+..|.+|.+.|
T Consensus        59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~  138 (413)
T PRK15403         59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG  138 (413)
T ss_pred             HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            33466677888999999999999998877665554444333333322222222222211111223456788899999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      +++.++.+....++..++|.+.+.+.+..++...|.+.+++.++..+..++..||++.
T Consensus       139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999999887777665566677777777777766665666788754

>PRK03545 putative arabinose transporter; Provisional

Probab=99.00  E-value=4.1e-08  Score=98.00  Aligned_cols=137  Identities=9%  Similarity=0.026  Sum_probs=91.6

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ...++..++.+..+.+.||+|||+++..+..+.++..+......+.+...+.-..........++....+.+|.+|.+.|
T Consensus        52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545         52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            33445566777888999999999998887766555444433333332222222222222222234556788899999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +++.|+......++..++|.+...+.+..++...+.+.++++++..+......||.+
T Consensus       132 ~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        132 AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999998877766556666777777766666555555556543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.00  E-value=3.2e-08  Score=99.95  Aligned_cols=118  Identities=19%  Similarity=0.134  Sum_probs=81.2

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++...+.+..|+++||+|||+.+..+....++.........+.+...+.-+.......+.++....+..|.+|++.
T Consensus        60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~  139 (426)
T PRK12307         60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL  139 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence            34556778889999999999999999988776665544443333333222222222222222345566778899999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHH
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  437 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~  437 (478)
                      |+++.|+......+|..++|.+.+.+.+..++...+++
T Consensus       140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            99999999988889999998887766665555445544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.00  E-value=7.9e-08  Score=93.11  Aligned_cols=378  Identities=16%  Similarity=0.136  Sum_probs=203.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHH-----HHHH------------HHHHHH
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFA-----GMMS------------ILGGAL   83 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~-----G~~~------------~~~~~~   83 (478)
                      .-+.+|.+++.+.+-.++++++-...+...-..+.-|+ +++...|+.-.+++     |...            ...+..
T Consensus        39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~  117 (480)
T KOG2563|consen   39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV  117 (480)
T ss_pred             cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence            34788888888888889999888877777777777788 55555555544432     2111            344444


Q ss_pred             HHHHHHHHHhhhc------hHH--HHHHHHHHhhcccCchhhH-HHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011756           84 VTFVAGLLSAFSP------NYI--SLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAW  154 (478)
Q Consensus        84 ~~~i~~~~~~~a~------~~~--~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~  154 (478)
                      .-.+++.+-..+.      .++  ....+..+.+.+.--.... .-.-.-|+|+++|..++.+-..+..+|..++.++.-
T Consensus       118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp  197 (480)
T KOG2563|consen  118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP  197 (480)
T ss_pred             HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence            5555554433332      222  3445555544332111111 123356789999999998888888888888777766


Q ss_pred             HHhcC------cchHHH--HHHhhHHHHH-HHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 011756          155 IVMPI------LTWRWL--LALSAIPAFV-LLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  225 (478)
Q Consensus       155 ~~~~~------~~WR~~--f~i~~i~~~l-~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (478)
                      .+.++      ..|-.-  |......+.+ +.+.....+|.|+.                         |+...      
T Consensus       198 ilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-------------------------Pps~s------  246 (480)
T KOG2563|consen  198 ILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-------------------------PPSAS------  246 (480)
T ss_pred             eecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-------------------------CCchh------
Confidence            55443      357663  4433322222 22233334443331                         00000      


Q ss_pred             CcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccc
Q 011756          226 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  305 (478)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  305 (478)
                         +     +..+  +         ..-.++.+.+++.+   +.+++.+.+..+...+|+....+.......        
T Consensus       247 ---~-----~~~~--~---------~~f~~si~~~~~n~---~F~il~~~ygi~~g~F~~l~~~l~~~l~~s--------  296 (480)
T KOG2563|consen  247 ---Q-----AALQ--D---------ASFPKSIKSCFKNR---QFIILAICYGIGLGLFNSLSTLLNLALCPS--------  296 (480)
T ss_pred             ---H-----hhhh--c---------CcHHHHHHHHHcCc---cHHHHHHHHhhhHHHHHHHHHHhhhccccc--------
Confidence               0     0000  0         00012333344322   233444555555555555554433111000        


Q ss_pred             cccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHH-HHHHHHHHHHHHHHHH-Hhh---chhHHHHHHHHHHHHHh
Q 011756          306 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-SMTIMFIFVCIFLLPL-VTL---QSNILLTALLSGARMFS  380 (478)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~  380 (478)
                       .......+  ....+..+++..|+++.|.+.||.+.-+ .+........+..+.+ ...   .+.++........+++.
T Consensus       297 -gY~~~~aG--~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  297 -GYEGVFAG--YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             -cCCccccc--hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence             01111111  2234445667889999999999986543 3333332222221111 111   11222222222333455


Q ss_pred             hhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc----hhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          381 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH----QTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       381 ~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~----~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      .+..++.+-...|.-=+..-++..|+.+..|++.+++-+++.+...+..+    +...-+.+...++.+.+++.++.|+-
T Consensus       374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence            56667777788888666778889999999999988888887776655544    23334555666677777888888887


Q ss_pred             cCcccch
Q 011756          457 KGKELVN  463 (478)
Q Consensus       457 ~g~~l~~  463 (478)
                      |.++.|+
T Consensus       454 ~R~~~e~  460 (480)
T KOG2563|consen  454 RRLRAEA  460 (480)
T ss_pred             HhHhhhh
Confidence            7766654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.00  E-value=2.7e-08  Score=100.83  Aligned_cols=137  Identities=12%  Similarity=0.081  Sum_probs=92.6

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|++.||+|||+.+.++..+.++..+......+.+......+...+.....++....+.+|.+|.+.
T Consensus        65 ~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  144 (434)
T PRK11663         65 TLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE  144 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence            44556778889999999999999999888777666555444333332222222222222222234556788899999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      |+++.|+.+..+.+|+.++|.+.+.+.+..++...+.+.+++.++..+...+..||+
T Consensus       145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999888777666666666666655554444444444553

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.99  E-value=1.7e-08  Score=103.79  Aligned_cols=139  Identities=14%  Similarity=0.037  Sum_probs=96.2

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.++.++++||+|||+.+..+..+..+..+......+........+...+......+....+..|.+|++.
T Consensus        44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~  123 (485)
T TIGR00711        44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK  123 (485)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence            44556778889999999999999999888776655544444333332222222223222233344567888999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      |+++.++......+|..++|.+.+.+.+..++...+++.+.+.++..++..+..||.+.
T Consensus       124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            99999999999999999999988877766555556666665656555566666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.98  E-value=7e-07  Score=88.65  Aligned_cols=286  Identities=17%  Similarity=0.161  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHhhhch------HHHHHHHHHHhhcccCchh-hHHHHHhhccC-CCCchhHHHHHHHHHHHHHHHH
Q 011756           78 ILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGH-VFFSWFMEFVP-PSNRGKWMVVFSTFWTFGSVSE  149 (478)
Q Consensus        78 ~~~~~~~~~i~~~~~~~a~~------~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~  149 (478)
                      ++.+.+..++.+.++-.+++      ....++.-.+.|++..... +..++..|+.+ ++||-+..++-+.+..+|.++.
T Consensus        86 lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~  165 (467)
T COG2211          86 LLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLV  165 (467)
T ss_pred             HHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666663      3445566666666655433 23355677776 4799999999999999998776


Q ss_pred             HHHHHHHh----c---CcchHHHHHHhhHHHHHHHHHH-HhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCC
Q 011756          150 AALAWIVM----P---ILTWRWLLALSAIPAFVLLIFI-VFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  221 (478)
Q Consensus       150 ~~~~~~~~----~---~~~WR~~f~i~~i~~~l~~~~~-~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  221 (478)
                      ..+...+.    +   ..|||..-.+.++.+++..++- +...|-+.         |+                 .  +.
T Consensus       166 ~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---------~~-----------------~--~~  217 (467)
T COG2211         166 AVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV---------ET-----------------Q--PT  217 (467)
T ss_pred             HHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---------cc-----------------c--cC
Confidence            65554332    1   4589998888887776664443 33444321         00                 0  00


Q ss_pred             CCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCCCCc
Q 011756          222 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWV-LYFGNSFVYYGIVLLASELSGSQSKC  300 (478)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~  300 (478)
                                ++.++.+.              ..++..+++.|.++..++..+ .+.+.++..-...++...        
T Consensus       218 ----------~~~~~~~~--------------~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y--------  265 (467)
T COG2211         218 ----------KTGVKLKL--------------KDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY--------  265 (467)
T ss_pred             ----------cccccccH--------------HHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE--------
Confidence                      00000000              012233333333322222222 122221111111111000        


Q ss_pred             ccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHH
Q 011756          301 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARM  378 (478)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  378 (478)
                            ..+..+..............+.+.++...+.+|+|+|+++.++..+..+....+.+...  .....+..++...
T Consensus       266 ------~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~  339 (467)
T COG2211         266 ------VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGV  339 (467)
T ss_pred             ------EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Confidence                  01122222222334444556667889999999999999998887665554444333222  2222222233333


Q ss_pred             HhhhhhhhhhhhcccccC-----cChh--HHHHHHHHHHHhHhHhHHHHHHHHHhhcc
Q 011756          379 FSMGTFIIANIFAPEIYP-----TSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTSC  429 (478)
Q Consensus       379 ~~~g~~~~~~~~~~E~~p-----~~~R--~~~~g~~~~~~~lg~~~~p~~~~~l~~~~  429 (478)
                      .....++..|+..+|...     +..|  |...|....+.++|..++.++.+.++...
T Consensus       340 g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         340 GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344456678888886643     3333  77778888889999999988877766443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.98  E-value=6.1e-08  Score=95.27  Aligned_cols=132  Identities=14%  Similarity=0.041  Sum_probs=86.8

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc-----hhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-----SNILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      .+..++..++.+..|+++||+|||+.+..+..+..+.........     +.+..........+......+....+.+|.
T Consensus        41 ~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  120 (365)
T TIGR00900        41 LAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDL  120 (365)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344566777889999999999999998877655443333222211     222222222222222222345567889999


Q ss_pred             cCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh
Q 011756          395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  451 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  451 (478)
                      +|++.|+++.|+.+....+|..++|.+.+.+.+..++...+.+.+...++..+....
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       121 VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998887766655555555555544444444443

>PRK03699 putative transporter; Provisional

Probab=98.98  E-value=8.3e-08  Score=95.92  Aligned_cols=128  Identities=15%  Similarity=0.146  Sum_probs=83.6

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ...++...+.++.+++.||+|||+.+..+..+.++..+......+.+...+..+..........+....+..|.+|++.|
T Consensus        50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r  129 (394)
T PRK03699         50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR  129 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence            44566788899999999999999988877655554443333333332222222222222222334556778899999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHH
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVV  448 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~  448 (478)
                      +.+.+..+....+++.++|.+.+.+... .++...+.+.+.+.++..++
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            9999998888888889999887766543 34555666656555544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.95  E-value=2.3e-08  Score=99.14  Aligned_cols=138  Identities=14%  Similarity=0.097  Sum_probs=96.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++...+.+..|+++||+|||+.+..+.....+.........+.+......+...++.....+....+..|.+|.+.
T Consensus        33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  112 (377)
T PRK11102         33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE  112 (377)
T ss_pred             HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            34456677888999999999999999888776655544444333332222222222222222334456788899999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+++.++.+....+|..++|.+.+.+.+..++...+.+.+.+.++..+...+..||++
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9999999999999999999998877766555556666666766666666666667764

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.94  E-value=8.2e-08  Score=95.92  Aligned_cols=139  Identities=17%  Similarity=0.032  Sum_probs=88.5

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|+++||+|||+.+..+.....+..+......+.+......+...+......+....+..|.+|.+.
T Consensus        50 ~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  129 (394)
T PRK11652         50 AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ  129 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence            44556678888999999999999998887765554443333332222222222122211111222344567788999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      |+.+.++.+....++..++|.+.+.+.+..++...+.+.+.+.++..+...++.||++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99999998888888888999887776665555556666655555554555556677643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.92  E-value=1.2e-07  Score=97.62  Aligned_cols=136  Identities=17%  Similarity=0.062  Sum_probs=90.5

Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhccccc-CcChhH
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY-PTSMRS  401 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~-p~~~R~  401 (478)
                      .++...+.+..|+++||+|||+.+..+..+..+..+......+.+...+.-........+..+.......+.+ |++.|+
T Consensus        51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~  130 (495)
T PRK14995         51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN  130 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4445566788999999999999998877666554444443333332222222222222222233344444554 789999


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          402 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       402 ~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      ++.|+......+|..++|.+.+.+.+..++.+.|++...+.++..++..++.||.++
T Consensus       131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999998888777666677777666666666666666777543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.91  E-value=8e-08  Score=97.88  Aligned_cols=138  Identities=14%  Similarity=0.043  Sum_probs=83.7

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL----QSNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      ....++..++.++.|+++||+|||+++..+..+.++..+.....    .+........+...++....++.......|.+
T Consensus        70 ~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~  149 (452)
T PRK11273         70 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW  149 (452)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhC
Confidence            44556678889999999999999998888776555444433321    11112222222222222222344455677999


Q ss_pred             CcChhHHHHHHHHHHHhHhHh-HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          396 PTSMRSTGAGVAYAVGRIGGM-VCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |++.|+++.|+.+....+|+. .+|.+...+....++...+++.+.+.++..++.+++.||+.
T Consensus       150 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        150 SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            999999999998888888764 45543322322234455666666666665555666666653

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.90  E-value=5.1e-08  Score=98.92  Aligned_cols=138  Identities=16%  Similarity=0.097  Sum_probs=88.3

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc---hhH-HHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNI-LLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      ....++..++.+..|+++||+|||+.+..+..+.++..+......   +.. ......+...+.....++.......|.+
T Consensus        68 ~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~  147 (438)
T TIGR00712        68 SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW  147 (438)
T ss_pred             HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhc
Confidence            445567788899999999999999988776655554433332211   111 1111112222221122344566777999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |++.|+++.|+.+....+++.++|.+....... .++...+.+.++++++..+..+++.||++
T Consensus       148 ~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       148 SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            999999999999999999999888776654433 34455666667776666666666666653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.89  E-value=1.1e-08  Score=101.07  Aligned_cols=138  Identities=15%  Similarity=0.115  Sum_probs=90.8

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|+++||+|||+.+..+..+.++..+......+.+...+..+...+......+....+.+|.+|.+.
T Consensus        37 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  116 (379)
T TIGR00881        37 SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE  116 (379)
T ss_pred             HHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh
Confidence            44456677888999999999999999888776655544444333333322222222222222334566788999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHH-HHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPL-VAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+++.++.+....+|+.++|. +...+....++...+.+.+++.++..+..+++.||++
T Consensus       117 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       117 RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            999999999999999999984 4444444444455566666666655555666656543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.89  E-value=1.2e-07  Score=94.32  Aligned_cols=138  Identities=11%  Similarity=0.031  Sum_probs=93.5

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|+++||+|||+.+..+..+.++..+......+.+......+...+......+....+..|.+|.+.
T Consensus        45 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  124 (382)
T PRK10091         45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK  124 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence            44457778899999999999999999888776666554444443333322222222222212223444667789999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+.+.++......++..++|.+...+.+..++...+.+.+...++..+..++..||.+
T Consensus       125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999988888999999888776666556666677766666666555566677754

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.89  E-value=5.1e-08  Score=96.84  Aligned_cols=168  Identities=17%  Similarity=0.170  Sum_probs=112.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhH-Hhhhh-hcCCCcchhhHHHHHHHHHHHH------------------HHH
Q 011756           21 FGKFQGLALAYSGLGWFSEAMEVMILSFVG-PAVKS-EWGLSSSEESLITTVVFAGMMS------------------ILG   80 (478)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~l~~~~~~~~~s~~~~G~~~------------------~~~   80 (478)
                      -.+.+|+.+.++.+-.++.+.+..+..... |.+++ |.+-+.+-.|++.++..+|-++                  ++.
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~  107 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV  107 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence            357788877777666666666654333332 22322 2344556689999998888665                  566


Q ss_pred             HHHHHHHHHHHH---h-hhc-hHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011756           81 GALVTFVAGLLS---A-FSP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWI  155 (478)
Q Consensus        81 ~~~~~~i~~~~~---~-~a~-~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~  155 (478)
                      +.++..++.++-   . ..+ .-+.++++|++.|+|.|...+.-+|++..+..++|-|+.+....+..+|..+||.+...
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            666666666443   2 233 56789999999999999887888899999999999999999999889999988888766


Q ss_pred             Hhc--Ccc-----------hHHHHHHhhHHHHHHHH-HHHhcCCCch
Q 011756          156 VMP--ILT-----------WRWLLALSAIPAFVLLI-FIVFMPESPR  188 (478)
Q Consensus       156 ~~~--~~~-----------WR~~f~i~~i~~~l~~~-~~~~lpESP~  188 (478)
                      +.+  ..|           .-.+-|+..+..++.++ +..++.|.+|
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            533  112           22233445444444433 3445677654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.88  E-value=2.3e-07  Score=92.96  Aligned_cols=133  Identities=11%  Similarity=-0.020  Sum_probs=87.0

Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      .+......++.|.++||+|||+.+..+.....+..+......+.+.................+....+..|.+|++.|++
T Consensus        56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            34445556888999999999999888776666554444433333322222222222111223445677889999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      +.|+.+...++|..++|.+.+.+. ..++...+.+.+...++..+...+..||.
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999888776 44555556665555555544444455653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.88  E-value=9.8e-08  Score=94.27  Aligned_cols=136  Identities=13%  Similarity=-0.011  Sum_probs=88.6

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ...++..++.+..|+++||+|||+++..................+.......-+.. ....+.....+...+|.+|++.|
T Consensus        34 ~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~-G~g~~~~~~~~~~~~~~~~~~~r  112 (368)
T TIGR00903        34 TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLA-ALGQPFLLNAFAPAASQIREERR  112 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HhHhHHHHHHHHHHHHHcCHHHH
Confidence            34466778888999999999999876544332222211111111111111111111 12223333445556899999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +++.++......+|+.+++.+...+.+..++...+.+.+++.++..++.++..||.+
T Consensus       113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999988887776666666777767777777777777778754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.87  E-value=1.6e-07  Score=92.74  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      ....++..++.+..|+++||+|||+.+..+..+..+..+...... +.+......+... ...+.+.....+.+|.+|++
T Consensus        44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~  122 (366)
T TIGR00886        44 AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIG-IAGGSFASCMPWISFFFPKK  122 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhchhhHhHHHHHHHhcCHh
Confidence            445567788899999999999999998887766655444433333 2222221212221 12233445567888999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                      .|+++.++....+++|..+++.+.+.+..
T Consensus       123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886       123 IQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999998888888887777665543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.85  E-value=1.6e-07  Score=96.12  Aligned_cols=169  Identities=17%  Similarity=0.126  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhh-hchHHHHHHH
Q 011756          271 LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDR-VGRKLSMTIM  349 (478)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr-~GRr~~~~~~  349 (478)
                      .++...+...+.||+...+.+.+.....        ..+.+............+...++.+++|+++|| +|||+.+..+
T Consensus        14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~--------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924        14 TLFFVELWERFSYYGMQGILAVYLVQQA--------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            3444555667777877666554432110        001111122222334456678889999999999 8999998888


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhh-hhhhhhhhcccccCcCh---hHHHHHHHHHHHhHhHhHHHHHHHHH
Q 011756          350 FIFVCIFLLPLVTLQSNILLTALLSGARMFSMG-TFIIANIFAPEIYPTSM---RSTGAGVAYAVGRIGGMVCPLVAVGL  425 (478)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~E~~p~~~---R~~~~g~~~~~~~lg~~~~p~~~~~l  425 (478)
                      ..+.++..+.+....+........... ....+ ..+....+.+|.+|.+.   |+++.++.+...++|+.++|.+.+.+
T Consensus        86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~-g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l  164 (475)
T TIGR00924        86 GIVLMLGHFMLAMSIYPDLIFYGLGTI-AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI  164 (475)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence            766655444433332222221111111 12222 23455678889998754   89999999999999999999998887


Q ss_pred             hhccchhHHHHHHHHHHHHHHHH
Q 011756          426 VTSCHQTAAILLLEALIVLSVVV  448 (478)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~i~~~~  448 (478)
                      .+..++...+.+.++..+++.+.
T Consensus       165 ~~~~g~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       165 AENYGYHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHH
Confidence            76555555665555444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.83  E-value=9.3e-08  Score=94.37  Aligned_cols=136  Identities=14%  Similarity=0.071  Sum_probs=84.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .....++..++.+..|.++||+|||+.+..+..+.++..+......+.+................++.......|.+| +
T Consensus        44 ~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~  122 (377)
T TIGR00890        44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-D  122 (377)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-c
Confidence            345556778889999999999999999888776655544443333332222222222222112223344455667777 5


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  455 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pe  455 (478)
                      .|+++.++......+|..+++.+...+.+..++...+.+.+++.++..+..+++.+|
T Consensus       123 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       123 KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            699999999888888887766555655554455556666666666665555555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.82  E-value=4.1e-07  Score=91.24  Aligned_cols=135  Identities=19%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      +..+...++.+..|+++||+|||+.+..+....++..+......+.+..........+ ..+..+....+..|.+|.+.|
T Consensus        62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~  140 (408)
T PRK09874         62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGL-LGGFVPNANALIATQVPRNKS  140 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHHhHHHHHHHhcCHhhh
Confidence            3445567778889999999999998887665554443333332222222211112111 223344456677789999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      +++.|+.+....+|..++|.+.+.+.+..++...+.+.+++.++..+..+++.||.
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999888776655555667777766666666666655654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.82  E-value=2.9e-07  Score=95.08  Aligned_cols=107  Identities=19%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhch------hHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS------NILLTALLSGARMFSMGTFIIANIFAP  392 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~  392 (478)
                      .....++.+++.+..+++.||+|||+.+..+..+..+..+......+      .....+.-+...+...+.++....+.+
T Consensus        62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  141 (502)
T TIGR00887        62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS  141 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34455778899999999999999999887766554443333222211      111222222232333344567789999


Q ss_pred             cccCcChhHHHHHHHHHHHhHhHhHHHHHHHHH
Q 011756          393 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  425 (478)
Q Consensus       393 E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l  425 (478)
                      |.+|++.|+++.++.+....+|..+++.+...+
T Consensus       142 e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       142 EFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888888765543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.80  E-value=1.2e-07  Score=95.54  Aligned_cols=148  Identities=12%  Similarity=0.050  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHH
Q 011756           37 FSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYI   99 (478)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~   99 (478)
                      ..+..+.....+..+.. .+.+.+..+.|.+.+...++...                 +..+.++..++.++.++++|.+
T Consensus       238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~  316 (420)
T PRK09528        238 FYDVFDQQFPNFFASFF-ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPL  316 (420)
T ss_pred             HHHHHHHHHHHHHHHHH-hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence            34444444333333322 22355566777776655433222                 3444445555556677889999


Q ss_pred             HHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHH-
Q 011756          100 SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVL-  176 (478)
Q Consensus       100 ~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~-  176 (478)
                      .+++.+++.|++.+.. .....++.|..|++.|+...+. ++....+|.++++.+.+.+.+..|||..|.+.++..++. 
T Consensus       317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~  396 (420)
T PRK09528        317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT  396 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            9999999999877654 3445678899999999987654 667788999999999999888889999999877655544 


Q ss_pred             HHHHHhcCC
Q 011756          177 LIFIVFMPE  185 (478)
Q Consensus       177 ~~~~~~lpE  185 (478)
                      .+.+..+++
T Consensus       397 ~~~~~~~~~  405 (420)
T PRK09528        397 LISVFTLSG  405 (420)
T ss_pred             HHHHHHhcC
Confidence            334444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.78  E-value=1.5e-07  Score=78.50  Aligned_cols=101  Identities=25%  Similarity=0.359  Sum_probs=81.2

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Q 011756           86 FVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRW  164 (478)
Q Consensus        86 ~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~  164 (478)
                      .++.+....+++++.+.+.+++.|++.+.. +....+..|..|+++|++..++.+....+|..+++.+...+.+..+||+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  118 (141)
T TIGR00880        39 VLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA  118 (141)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHH
Confidence            334444455688999999999999988765 3456778999999999999999999999999999999988888889999


Q ss_pred             HHHHhhHHHHHHHH-HHHhcCCC
Q 011756          165 LLALSAIPAFVLLI-FIVFMPES  186 (478)
Q Consensus       165 ~f~i~~i~~~l~~~-~~~~lpES  186 (478)
                      .+.+.++..++..+ ..++.||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880       119 PFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCC
Confidence            99988876666544 44445664

>PRK11043 putative transporter; Provisional

Probab=98.78  E-value=6.6e-07  Score=89.62  Aligned_cols=136  Identities=17%  Similarity=0.101  Sum_probs=88.7

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      .+..++...+.++.|+++||+|||+.+..+..+..+..+......+.+......+..................|.+|.+.
T Consensus        48 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  127 (401)
T PRK11043         48 SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK  127 (401)
T ss_pred             HHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence            34456678889999999999999999887765554443333332222222211112111111222334567789999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  455 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pe  455 (478)
                      |+...+..+....+++.++|.+.+.+.+..++...+.+.+++.++..+..++++|+
T Consensus       128 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        128 ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999998888889999999988877776666666666666666665555555444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.78  E-value=2.7e-07  Score=89.93  Aligned_cols=130  Identities=22%  Similarity=0.176  Sum_probs=88.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..|+++||+|||+.+..+.....+..+......+.+.................+....+..|.+|++.
T Consensus        41 ~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  120 (352)
T cd06174          41 SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE  120 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc
Confidence            44456678889999999999999998887776665544443333222222222222222222334566889999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  449 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  449 (478)
                      |+++.++.+....+|+.++|.+.+.+.+..++...+.+.+.+.++..+..
T Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988877765544455555555544444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.78  E-value=5.9e-07  Score=89.73  Aligned_cols=132  Identities=10%  Similarity=-0.060  Sum_probs=84.7

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ...+.......+.|+++||+|||+++..+..+..+..+......+.   ....+..........+....+.+|.+|.+.|
T Consensus        46 ~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~  122 (393)
T PRK11195         46 FFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKL  122 (393)
T ss_pred             HHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            3345667778899999999999999888766554433322222111   1111222223333456678899999999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +++.|+......++..++|.+.+.+.+.. ....+.+.+.+.+++ .+..+..||.+
T Consensus       123 ~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        123 VKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            99999999999999999999988776642 233333333333333 33345566654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.77  E-value=3.3e-07  Score=93.93  Aligned_cols=110  Identities=13%  Similarity=0.019  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC--hhHHH
Q 011756          328 PGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTS--MRSTG  403 (478)
Q Consensus       328 ~g~~~~~~l~dr-~GRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~--~R~~~  403 (478)
                      ...+++|+++|| +|||+.+..+..+..+..+......+ ...................+......+|.||++  .|+.+
T Consensus        65 ~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~  144 (489)
T PRK10207         65 GLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGA  144 (489)
T ss_pred             HHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcc
Confidence            345689999999 99999999887666554443333222 111111111221111122344567889999987  45888


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHH
Q 011756          404 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  437 (478)
Q Consensus       404 ~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~  437 (478)
                      .++.+...++|+.++|.+.+.+.+..++...|++
T Consensus       145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i  178 (489)
T PRK10207        145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL  178 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            9999999999999999988888776665555555

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.74  E-value=1.9e-07  Score=95.21  Aligned_cols=128  Identities=15%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             HHhhhhhcCCCcchhhHHHHHHHHHHHH-------------------HHH--HHHHHHHHHHHHhhhchHHHHHHHHHHh
Q 011756           50 GPAVKSEWGLSSSEESLITTVVFAGMMS-------------------ILG--GALVTFVAGLLSAFSPNYISLLILRGLA  108 (478)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~s~~~~G~~~-------------------~~~--~~~~~~i~~~~~~~a~~~~~l~~~R~l~  108 (478)
                      .|...++.++++.+.+++.+...++.+.                   ...  +.+...++.++...++|++.+++.+++.
T Consensus       264 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~  343 (455)
T TIGR00892       264 LVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFF  343 (455)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            3444566899999988888776544332                   011  1111122233445678899999999999


Q ss_pred             hcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHhhHHHHHHH
Q 011756          109 GAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVLL  177 (478)
Q Consensus       109 Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~WR~~f~i~~i~~~l~~  177 (478)
                      |++.|... ...+++.|..|+++||+..++.+....+|.++++.+++.+.+.. +|++.|.+.++..++..
T Consensus       344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            99887753 45677889999999999999999999999999999998887766 59999998887655443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.73  E-value=2e-07  Score=96.83  Aligned_cols=134  Identities=17%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      .+..++.++|.++.|+++||+|||+++..+.++..++.+...+..+.....++-++.+++..+.....+.+.+|+++++.
T Consensus       125 s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~  204 (521)
T KOG0255|consen  125 SLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ  204 (521)
T ss_pred             HHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch
Confidence            44456778899999999999999999999888777776665665555555555566666677778888999999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+.+..+ ..+.+.++.+.|....++..  ++...+++......+..+. ++++||++
T Consensus       205 R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  205 RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            9999999 88888889888888777765  3444444444444444333 66666766

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.72  E-value=1.3e-06  Score=89.67  Aligned_cols=132  Identities=20%  Similarity=0.113  Sum_probs=86.4

Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh--chhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL--QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      +-.+.-.+.+|.++||+.||++++.+-.+.++....+.   ..  .+.+...++.+....+.....+......+|+.|.+
T Consensus        56 LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~  135 (524)
T PF05977_consen   56 LPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE  135 (524)
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence            33455567899999999999998877655433222211   11  12233233323332222233455678999999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  455 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pe  455 (478)
                      ....++++.....++...++|.+.+.++...+....+.+-+.+.++..+....+.++
T Consensus       136 ~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~  192 (524)
T PF05977_consen  136 DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPP  192 (524)
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            999999999999999999999998888776666566666555555554444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.72  E-value=2.8e-07  Score=94.00  Aligned_cols=138  Identities=20%  Similarity=0.089  Sum_probs=86.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      .....++..++.+..|+++||+|||+.+..+..+..+..+......   +.+......+...+.....++....+.+|.+
T Consensus        77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  156 (481)
T TIGR00879        77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA  156 (481)
T ss_pred             HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence            3455567788999999999999999998877655544333322211   1111222222222222233455678899999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHH---HHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVA---VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |.+.|+++.++.+....+|..++|.+.   .......++...+.+.+...++. ++..++.||+.
T Consensus       157 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~  220 (481)
T TIGR00879       157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESP  220 (481)
T ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence            999999999999999999999999876   32223334444555533333333 34445567764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.8e-07  Score=90.13  Aligned_cols=141  Identities=17%  Similarity=0.133  Sum_probs=105.6

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....+.+-++-.+.|.++||.+.|+.+..+.++++++.+.+.+..+..+..++......+-...++.+....+.-||++.
T Consensus        71 s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e  150 (448)
T COG2271          71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE  150 (448)
T ss_pred             HHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence            44456677888999999999999999999999998888777765544444444544444333346778889999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHH--HHHhhccchhHHHHHHHHHHHHHHHHHHhcc---ccccCcc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVA--VGLVTSCHQTAAILLLEALIVLSVVVILLIP---FETKGKE  460 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~---pet~g~~  460 (478)
                      ||+-.++-|...++|+.+.|.+.  ..+..+.++...|++-++++++..++.++..   ||+.|.+
T Consensus       151 RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP  216 (448)
T COG2271         151 RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP  216 (448)
T ss_pred             cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence            99999999999999999998887  5555554556677777777766666666654   5555644

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.70  E-value=6.9e-07  Score=90.01  Aligned_cols=137  Identities=15%  Similarity=0.088  Sum_probs=84.3

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h-hchh-HHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T-LQSN-ILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      ....++.+++.+..|+++||+|||+.+..+..+.++..+...   . ..+. +......+..........+....+.+|.
T Consensus        59 ~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  138 (417)
T PRK10489         59 TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPAL  138 (417)
T ss_pred             HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            444566778889999999999999987765544443222211   1 1111 2111111222111111234456778899


Q ss_pred             cCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      .|.+.|+++.++.+....+|..++|.+.+.+.+..++.+.+.+.++..++..+. .+..||++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~  200 (417)
T PRK10489        139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPALP  200 (417)
T ss_pred             cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCCC
Confidence            999999999999999999999999998887766555555555555544444443 33445543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.70  E-value=7.6e-07  Score=91.40  Aligned_cols=138  Identities=14%  Similarity=0.050  Sum_probs=85.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---------chhHHH---HHHHHHHHHHhhhhhhh
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---------QSNILL---TALLSGARMFSMGTFII  386 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~g~~~~  386 (478)
                      .....++...+.++.|+++||+|||+++..+..+..+..+.....         .+....   .+.-+...+...+.++.
T Consensus        61 ~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~  140 (479)
T PRK10077         61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML  140 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhH
Confidence            344557778899999999999999999887765544333222210         111111   11112222333344566


Q ss_pred             hhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          387 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       387 ~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      ...+.+|.+|.+.|+++.|+......+|..+++.+...+.        ...++...+++.+++.++.. +..++.||+.
T Consensus       141 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~  218 (479)
T PRK10077        141 SPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETP  218 (479)
T ss_pred             HHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCc
Confidence            7889999999999999999998888888888776544332        12234455555555555544 3355568875

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.70  E-value=8e-07  Score=88.81  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=95.9

Q ss_pred             hhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCc
Q 011756           52 AVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGS  114 (478)
Q Consensus        52 ~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~  114 (478)
                      .+++++++++.+.+++.+...++.+.                 +..+.....+.......++++..+++.|++.+++.|.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45677899988888876654332211                 1222222222222334567788888899998887665


Q ss_pred             h-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhcCC
Q 011756          115 G-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPE  185 (478)
Q Consensus       115 ~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpE  185 (478)
                      . .....+..|..|+ +||+.+++++....+|..+++.++..+.++.||+..|.+.+++.++.++..+++||
T Consensus       322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4 2344567899885 59999999999999999999999998888889999999988888877777777765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.70  E-value=1.6e-06  Score=86.27  Aligned_cols=109  Identities=14%  Similarity=-0.014  Sum_probs=72.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .....++...+.+..++++||+|||+.+..+.....+.........+.+...+..+..........+.......+..|.+
T Consensus        47 ~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (381)
T PRK03633         47 SSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR  126 (381)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            34445677888999999999999999888877665554443333333222222222222222222333344556788889


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                      .|+++.+..+....+|..++|.+.+.+.+
T Consensus       127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633        127 NRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999998776544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.69  E-value=2.8e-09  Score=109.53  Aligned_cols=150  Identities=20%  Similarity=0.257  Sum_probs=2.7

Q ss_pred             HHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH--------
Q 011756           37 FSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLL--------   91 (478)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~--------   91 (478)
                      +.++.-......+.+++++.|++++++.|++.+.+-+|..+                 +-.+.++..+++++        
T Consensus        13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~   92 (539)
T PF03137_consen   13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS   92 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence            44466666666778899999999999999999988655333                 11111111111110        


Q ss_pred             ---------------------H-------------------h--hhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCC
Q 011756           92 ---------------------S-------------------A--FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPP  128 (478)
Q Consensus        92 ---------------------~-------------------~--~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~  128 (478)
                                           +                   .  ...-+..++++.++.|+|....+ ...+|+-|.+++
T Consensus        93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~  172 (539)
T PF03137_consen   93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK  172 (539)
T ss_dssp             -----------------------------------------------------------SSS------------------
T ss_pred             CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence                                 0                   0  00114568999999998887654 567899999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhcC------------------c----chHHHHHHhhHHHHHHHHHHHhcCCC
Q 011756          129 SNRGKWMVVFSTFWTFGSVSEAALAWIVMPI------------------L----TWRWLLALSAIPAFVLLIFIVFMPES  186 (478)
Q Consensus       129 ~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~------------------~----~WR~~f~i~~i~~~l~~~~~~~lpES  186 (478)
                      |.-+...|+......+|+.+|.+++...+..                  -    .|..-|.+.++..++..+...++|..
T Consensus       173 ~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  173 KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            9999999999999999999888887653210                  0    25555665565555555555556654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.69  E-value=3.9e-06  Score=84.36  Aligned_cols=136  Identities=12%  Similarity=0.057  Sum_probs=83.7

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-----QSNILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      .+..+...+..+..|++.||+|.|+++..+..+.++..+.....     .+......+-+...+ ..+.++......++.
T Consensus        77 ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gi-gg~~f~~~~~~vs~w  155 (462)
T PRK15034         77 ALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGF-AGANFASSMGNISFF  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence            33445555666778999999999998887776655444433322     122222222222222 233456667788999


Q ss_pred             cCcChhHHHHHHHHHHHhHhHhHHHHHHHHHh-----hcc-------------chhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV-----TSC-------------HQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~-----~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      ||++.||++.|+....+++|..+++.+.+.+.     ...             +......+++.+.++..+..++..++.
T Consensus       156 fp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        156 FPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             CCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999998888888877766655433     111             122334566666666666666655543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.69  E-value=2.2e-06  Score=83.37  Aligned_cols=137  Identities=15%  Similarity=0.085  Sum_probs=99.7

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          318 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       318 ~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      .....+++..++..+...+.||+.||+.++....+..+..+......+.....+-=....+.....++......+++.|+
T Consensus        53 lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp  132 (394)
T COG2814          53 LITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP  132 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            34556677788889999999999999998876655554444333322222221111122222234566778899999999


Q ss_pred             ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccc
Q 011756          398 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  454 (478)
Q Consensus       398 ~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~p  454 (478)
                      +.|+++.++...--.++..++..+...+-+..++..+|+..+++.++..+..+...|
T Consensus       133 ~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999998888888888777776767677888999999999999888888888

>TIGR00898 2A0119 cation transport protein

Probab=98.68  E-value=4.3e-07  Score=93.90  Aligned_cols=134  Identities=16%  Similarity=0.099  Sum_probs=89.4

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      .+..++.++|.++.|+++||+|||+.+..+..+.++..+......+.+...+..++..+...+..+..+.+.+|.+|.+.
T Consensus       134 s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~  213 (505)
T TIGR00898       134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ  213 (505)
T ss_pred             HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence            44556778899999999999999999888776665554444433333333333333333333446677899999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |+.+.++......+|.+++|.+...+ .  ++...+++.+...++..+.. ++.||+.
T Consensus       214 r~~~~~~~~~~~~~g~~~~~~~~~~~-~--~wr~~~~~~~i~~~~~~~~~-~~~~esp  267 (505)
T TIGR00898       214 RAIVGTLIQVFFSLGLVLLPLVAYFI-P--DWRWLQLAVSLPTFLFFLLS-WFVPESP  267 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh-h--HHHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence            99999998777778888888765433 2  24455556665555555444 5567753

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.67  E-value=1.5e-06  Score=89.49  Aligned_cols=115  Identities=13%  Similarity=0.067  Sum_probs=71.4

Q ss_pred             HHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhh-hhhhhhhhcccccCcCh--hHHHH
Q 011756          330 LLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSN-ILLTALLSGARMFSMG-TFIIANIFAPEIYPTSM--RSTGA  404 (478)
Q Consensus       330 ~~~~~~l~dr-~GRr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~~~~~~~E~~p~~~--R~~~~  404 (478)
                      .+++|+++|| +|||+.+..+..+.++.........+. .......... ....| ..+....+.+|.+|.+.  |..+.
T Consensus        74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~-gig~g~~~~~~~~l~~~~f~~~~~~~~~~~  152 (500)
T PRK09584         74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATI-AVGNGLFKANPSSLLSTCYEKDDPRLDGAF  152 (500)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence            3578999999 599999888776555443333332211 1111111111 12222 23345678889998643  45678


Q ss_pred             HHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 011756          405 GVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  445 (478)
Q Consensus       405 g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~  445 (478)
                      ++.+...++|+.++|.+.+.+.+..++...|.+.++...++
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            88889999999999999988877666555665544433343

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.67  E-value=2.5e-06  Score=86.44  Aligned_cols=134  Identities=20%  Similarity=0.125  Sum_probs=78.6

Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchh--------HHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--------ILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      ++..+|.+++|+++||+|||+.+..+....++..+...+..+.        ......-+...+...+.++....+.+|.+
T Consensus        74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~  153 (432)
T PRK10406         74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVA  153 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhC
Confidence            4456899999999999999999888776665544443332111        01111112222222334567788999999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      |++.|+...++.......|..+++.+...+.        ...++...|.+.++..++. ++.....||++.
T Consensus       154 p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~  223 (432)
T PRK10406        154 VEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ  223 (432)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence            9999999988876655566666655433221        1234444555444433333 233334567643

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.67  E-value=1.8e-07  Score=95.62  Aligned_cols=136  Identities=10%  Similarity=0.016  Sum_probs=91.7

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      ...++..++.+.+|+++||+|||+.+..+..+.++..+.....  .+.....+.-+...+.....++....+.+|.+|++
T Consensus        84 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~  163 (465)
T TIGR00894        84 SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK  163 (465)
T ss_pred             HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH
Confidence            3446678888999999999999998887766555443332211  11111222222222222334456678999999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      .|+++.|+......+|..++|.+.+.+.+. .++...+.+.+++.++..++.+++++|.
T Consensus       164 ~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       164 ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999988877766 3555667776666665555555555543

>TIGR00897 2A0118 polyol permease family

Probab=98.63  E-value=1.8e-06  Score=86.54  Aligned_cols=112  Identities=11%  Similarity=0.017  Sum_probs=69.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhc-hhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQ-SNILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      .....++..++.++.|.+.||+|||+.+..+..+.++..+...   ... +........................+..|.
T Consensus        54 ~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~  133 (402)
T TIGR00897        54 FTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYN  133 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHh
Confidence            3455567788899999999999999998877665544332211   111 111111111111111111222334566788


Q ss_pred             cCcChhHHHHHHHHHHHhHhH-hHHHHHHHHHhhccc
Q 011756          395 YPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCH  430 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~-~~~p~~~~~l~~~~~  430 (478)
                      +|++.|+++.|+.+....+|. .++|.+.+.+.+..+
T Consensus       134 ~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       134 TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999988885 578877666655444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.63  E-value=2.2e-05  Score=79.19  Aligned_cols=138  Identities=18%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             HhHHhhhhhcCCCcchhhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh----hchHHHHH
Q 011756           48 FVGPAVKSEWGLSSSEESLITTVVFAGMMS---------------------ILGGALVTFVAGLLSAF----SPNYISLL  102 (478)
Q Consensus        48 ~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~---------------------~~~~~~~~~i~~~~~~~----a~~~~~l~  102 (478)
                      -..|.+++++++++.+...+.+...+...+                     ++++.++..++.+..+.    ..+.....
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~   90 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence            345778999999999988887776543322                     44444444333333332    23455555


Q ss_pred             HHHHHhhcccCch-hhHHHHHhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH-
Q 011756          103 ILRGLAGAGLGSG-HVFFSWFMEFVPP--SNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-  178 (478)
Q Consensus       103 ~~R~l~Gig~g~~-~~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~-  178 (478)
                      +.=++..+|.... .+.-..+.|...+  +.||...+.......+|.+++..+++.+.+..++|+.|.+.++...+..+ 
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            5556666665543 3344566777633  34788888888888899999999988888888999999888765555544 


Q ss_pred             HHHhcCC
Q 011756          179 FIVFMPE  185 (478)
Q Consensus       179 ~~~~lpE  185 (478)
                      .....+|
T Consensus       171 ~~~~~~e  177 (433)
T PF03092_consen  171 ALFLLEE  177 (433)
T ss_pred             HHHhhhh
Confidence            4444555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15075 citrate-proton symporter; Provisional

Probab=98.62  E-value=3.3e-06  Score=85.59  Aligned_cols=98  Identities=11%  Similarity=0.046  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHH--------HHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          327 LPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL--------LTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       327 ~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .+|.+..|+++||+|||+.+..+..+.++.........+...        ..+.-+...+...+.++....+.+|.+|++
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~  149 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG  149 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence            467889999999999999998877665554444433322211        111111111111123445568899999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHH
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVG  424 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~  424 (478)
                      .|+++.++.....+++..+++.+...
T Consensus       150 ~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075        150 RKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888877777665443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.61  E-value=2.3e-06  Score=85.58  Aligned_cols=118  Identities=12%  Similarity=-0.125  Sum_probs=73.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hchh---H---HHHHHHHHHHHHhhhhhhhhhhhc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQSN---I---LLTALLSGARMFSMGTFIIANIFA  391 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~--~~~~---~---~~~~~~~~~~~~~~g~~~~~~~~~  391 (478)
                      ....+...++.+..|+++||+|||+++..+..+.++..+....  ..+.   .   .....-+..........+....+.
T Consensus        58 ~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  137 (399)
T PRK05122         58 SLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWG  137 (399)
T ss_pred             HHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHH
Confidence            3444666778889999999999999988876654433222111  1111   0   111111111111112233445677


Q ss_pred             ccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHH
Q 011756          392 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  437 (478)
Q Consensus       392 ~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~  437 (478)
                      .|.+|.+.|+++.++......+|..++|.+.+.+.+..++...+.+
T Consensus       138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  183 (399)
T PRK05122        138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLL  183 (399)
T ss_pred             HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8999999999999998888888888888887777665554433333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.60  E-value=4.2e-07  Score=93.04  Aligned_cols=134  Identities=16%  Similarity=0.031  Sum_probs=82.7

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-----LQSNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      ...++..++.+..|+++||+|||+++..+.++.++..+....     ..+............+.....++....+.+|.+
T Consensus        72 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (467)
T PRK09556         72 GFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT  151 (467)
T ss_pred             HHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Confidence            345667788899999999999999987776555443332221     122222222222222222223455677899999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHHhccc
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC---HQTAAILLLEALIVLSVVVILLIPF  454 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~~p  454 (478)
                      |++.|+++.|+....+.+|+.+++.+...+....   ++...+.+.+.+.++..+..+++.+
T Consensus       152 ~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~  213 (467)
T PRK09556        152 PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGS  213 (467)
T ss_pred             CccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999887765544332   1223344445554444444444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.59  E-value=3.6e-06  Score=83.25  Aligned_cols=136  Identities=16%  Similarity=0.051  Sum_probs=81.5

Q ss_pred             HHhhhhhHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          322 TSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~GRr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ..+...+.....|.++||+|||+.+.. +.....+..+......+.+.................+....+..|..|.+.|
T Consensus        42 ~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~  121 (375)
T TIGR00899        42 SAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGR  121 (375)
T ss_pred             HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcch
Confidence            334556667788999999999886544 3333333222223222222211111111111122334445667788887777


Q ss_pred             HHH--HHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          401 STG--AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       401 ~~~--~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +.+  .+.....+.+|..++|.+.+.+.+..++...+.+.+.+.++..+..+++.||.+
T Consensus       122 ~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       122 EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            755  577777778899999988877766656666777777776766666666667654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.57  E-value=0.00013  Score=71.64  Aligned_cols=168  Identities=15%  Similarity=0.227  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhh-cCCCcchhh----------HHHHHHHHHHHH--------HHHHHHH
Q 011756           24 FQGLALAYSGLGWFSEAMEVMILSFVGPAVKSE-WGLSSSEES----------LITTVVFAGMMS--------ILGGALV   84 (478)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~----------~~~s~~~~G~~~--------~~~~~~~   84 (478)
                      +....++.|.+|.+.+- . -.-.|..|.+..+ .|+|.+|..          .+..+..+...-        ++...+.
T Consensus         3 w~~~~~llc~~gf~~~f-r-PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~   80 (412)
T PF01770_consen    3 WKKITLLLCLFGFFKEF-R-PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALS   80 (412)
T ss_pred             chHHHHHHHHHHHHHhc-C-CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34456667777754442 1 1223455555554 577776642          122221111111        3334444


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc--Ccch
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP--ILTW  162 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~W  162 (478)
                      ..+...+.-+.++...+-+.-+.-|++.+...+.++|+--..|+++-.++.+......-+|..++++++..+..  ..+.
T Consensus        81 ~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy  160 (412)
T PF01770_consen   81 YIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSY  160 (412)
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            44445556678999999999999999888877777887777788888999999999999999999998887654  4467


Q ss_pred             HHHHHHhhHHHHHHHHHHHhcCCCchhhhhc
Q 011756          163 RWLLALSAIPAFVLLIFIVFMPESPRYLCTK  193 (478)
Q Consensus       163 R~~f~i~~i~~~l~~~~~~~lpESP~~l~~~  193 (478)
                      +.+..+......+.++..+++|-.++=+--|
T Consensus       161 ~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~  191 (412)
T PF01770_consen  161 FQLNYISLASVSLALLIALFLPMPKRSLFFH  191 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccccee
Confidence            7777776665555666777888766533333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09952 shikimate transporter; Provisional

Probab=98.56  E-value=5.8e-06  Score=83.89  Aligned_cols=133  Identities=17%  Similarity=0.061  Sum_probs=79.6

Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI--------LLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      ++..+|.++.|+++||+|||+.+..+..+.++..+...+..+..        .....-+...+...+.++....+.+|.+
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  154 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA  154 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence            44667889999999999999999887766665544444322211        0111112222222334455678899999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHhh--------ccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT--------SCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      |.+.|+...+.......+|..+++.+...+..        ..++...|++.+...++ .+.....+||++
T Consensus       155 p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~  223 (438)
T PRK09952        155 PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA  223 (438)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            99999999888877777777777655443321        22344455444433322 222333457764

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.55  E-value=2.5e-07  Score=87.69  Aligned_cols=135  Identities=17%  Similarity=0.099  Sum_probs=88.9

Q ss_pred             HHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhH
Q 011756          322 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  401 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~  401 (478)
                      .+++.++.+...|.++||.|||+++.+|....+++....+...+-.. .+..=...+...|-.++.-++.+|+++.+.|+
T Consensus        77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~a-fv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~  155 (451)
T KOG2615|consen   77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAA-FVLARFLGGIFKGNLSVIRAIISDVVSEKYRP  155 (451)
T ss_pred             HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccCchHHHHHHHHhhcChhhcc
Confidence            34667888899999999999999999988777765554443322111 11100111223455567889999999999999


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHHhh---ccchhHHHH--HHHHHHHHH-HHHHHhcccccc
Q 011756          402 TGAGVAYAVGRIGGMVCPLVAVGLVT---SCHQTAAIL--LLEALIVLS-VVVILLIPFETK  457 (478)
Q Consensus       402 ~~~g~~~~~~~lg~~~~p~~~~~l~~---~~~~~~~~~--~~~~~~~i~-~~~~~~~~pet~  457 (478)
                      .+++..+....+|-+++|.+.+++-.   ..+.+..++  ++..+...+ .....++.|||-
T Consensus       156 l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  156 LGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             ceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999999998877654   222211111  222222333 445556778985

>TIGR00889 2A0110 nucleoside transporter

Probab=98.55  E-value=1.8e-06  Score=87.05  Aligned_cols=89  Identities=19%  Similarity=0.223  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhcC------cchHHHHHHh
Q 011756           98 YISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS-TFWTFGSVSEAALAWIVMPI------LTWRWLLALS  169 (478)
Q Consensus        98 ~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~------~~WR~~f~i~  169 (478)
                      +..+++.+++.|++.+... ....++.|.+|+++||+..++.+ ..+.+|..++|.+++.+.++      +|||..|.+.
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~  387 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF  387 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            4677889999999887653 44567899999999999999997 57889999999999887665      5799999888


Q ss_pred             hHHHHHH-HHHHHhcCCC
Q 011756          170 AIPAFVL-LIFIVFMPES  186 (478)
Q Consensus       170 ~i~~~l~-~~~~~~lpES  186 (478)
                      ++..++. ++..+++||+
T Consensus       388 ~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       388 AGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHhCCc
Confidence            7766655 4455667887

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.53  E-value=1.1e-05  Score=80.99  Aligned_cols=108  Identities=13%  Similarity=0.023  Sum_probs=72.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      .....++..++.+..+++.||+|||+.+..+..+.++..+....   ..+.+......+.............+.+..|..
T Consensus        44 ~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~  123 (410)
T TIGR00885        44 QSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG  123 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence            34455677888899999999999999998887665544333221   111111111122222212222344566777889


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHh
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  426 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~  426 (478)
                      |.+.|++..++.+.+..+|+.++|.+...+.
T Consensus       124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.52  E-value=4.1e-06  Score=83.73  Aligned_cols=124  Identities=12%  Similarity=-0.022  Sum_probs=80.5

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++...+.+..++++||+|||+++..+..+.++..+...+..+.......-+...+...........+..|.+| +.
T Consensus        51 s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~  129 (393)
T PRK09705         51 ALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR  129 (393)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc
Confidence            34445677788999999999999999999887777666555544333322222222222222223444567788887 77


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhcc-chhHHHHHHHHHHHH
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVL  444 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i  444 (478)
                      |+.+.|+.......|+.+++.+.+.+.+.. ++...+.+++...++
T Consensus       130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        130 TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999998888888888888777666543 344444444444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.50  E-value=8.5e-06  Score=92.88  Aligned_cols=135  Identities=15%  Similarity=-0.065  Sum_probs=82.4

Q ss_pred             HHhhhhhHHHHHHHHHhhhchHHHHHHHHH---HHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          322 TSFAELPGLLTAALLVDRVGRKLSMTIMFI---FVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      ..+..++...++|+++||+|||+++.....   +.+...+......+.+...++.++.........+....+..|.+|.+
T Consensus        61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~  140 (1140)
T PRK06814         61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD  140 (1140)
T ss_pred             HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc
Confidence            345556778889999999999997643221   11111111111122232233333333333344566788999999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      .|+.++|+.+....+|..++|.+.+.+....++...+ +..+...+..++..+..|+++
T Consensus       141 ~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        141 ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            9999999999999999999999998887765544444 333332333333344445543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.49  E-value=1.1e-05  Score=78.08  Aligned_cols=137  Identities=18%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hchhHHHHHHHH-HHHHHhhhhhhhhhhhc
Q 011756          315 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQSNILLTALLS-GARMFSMGTFIIANIFA  391 (478)
Q Consensus       315 ~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~  391 (478)
                      ......+..+...+--+.-+++.||+|-|+....+..+..+-.+....  .+... ...+.+ ......-+.+.+...+.
T Consensus        51 ~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~-~~ll~~gll~G~~GasFav~m~~~  129 (417)
T COG2223          51 KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST-WQLLVIGLLLGLAGASFAVGMPNA  129 (417)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch-HHHHHHHHHHhcccceehcccccc
Confidence            333444555556666788889999999999887776655433332222  22211 111111 11112223455667788


Q ss_pred             ccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHhcc
Q 011756          392 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH---QTAAILLLEALIVLSVVVILLIP  453 (478)
Q Consensus       392 ~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~~~~  453 (478)
                      ++.||+|.+|++.|+.. .|++|..+..++.+.+....+   +.....++....++..+..++..
T Consensus       130 s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         130 SFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM  193 (417)
T ss_pred             cccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998 999999999988887777666   45555666666666666666654

>PRK12382 putative transporter; Provisional

Probab=98.49  E-value=1.2e-05  Score=80.14  Aligned_cols=112  Identities=13%  Similarity=-0.146  Sum_probs=69.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---Hhh-----chhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTL-----QSNILLTALLSGARMFSMGTFIIANIFA  391 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~  391 (478)
                      ....+...++.+..|+++||+|||+.+..+.....+..+..   ...     .+.....+.-...........+....+.
T Consensus        58 s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  137 (392)
T PRK12382         58 GIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWG  137 (392)
T ss_pred             HHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445667788899999999999999887765544322211   110     0111111111111111111223345677


Q ss_pred             ccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccch
Q 011756          392 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ  431 (478)
Q Consensus       392 ~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~  431 (478)
                      .|.+|++.|+++.|+......++..++|.+.+.+.+..++
T Consensus       138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (392)
T PRK12382        138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF  177 (392)
T ss_pred             HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            8999999999999998887788888999887766554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.47  E-value=1.5e-05  Score=82.02  Aligned_cols=129  Identities=19%  Similarity=0.213  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHhhh-----chHHH-HHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          328 PGLLTAALLVDRV-----GRKLS-MTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       328 ~g~~~~~~l~dr~-----GRr~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .+.++.+.++||+     |||+. +..+....++....+.+..   +.+..........++..........+.+|.+|.+
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            4678899999999     99985 4455444433333333321   1112222222222233333345678899999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT-SCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      .|+++.++.....++|..+++.+...+.+ ..++...+.+.+++.++..+..++ .||+.
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~  198 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT  198 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            99999999999999999999888777766 345666777777766666554444 57764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.44  E-value=1.3e-05  Score=91.39  Aligned_cols=108  Identities=18%  Similarity=0.008  Sum_probs=72.5

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      +..+..+++.+.+|+++||+|||+++..+..+..+..+...   ...+.+...+..++..+......+..+.+.+|.+|.
T Consensus        55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  134 (1146)
T PRK08633         55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK  134 (1146)
T ss_pred             HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence            34455677888999999999999998876654333222111   112222222222222222223345567899999999


Q ss_pred             ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          398 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       398 ~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      +.|+++.|+......+|.+++|.+.+.+...
T Consensus       135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        135 ENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988777654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=1.1e-06  Score=84.00  Aligned_cols=140  Identities=19%  Similarity=0.149  Sum_probs=103.4

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh-
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM-  399 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~-  399 (478)
                      ..++.++....+.|.++||+|+|.++++|..+.....+.+.+..+.+...+.=................+.++.||.+. 
T Consensus       114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e  193 (464)
T KOG3764|consen  114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE  193 (464)
T ss_pred             HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh
Confidence            3445677778888999999999999999988777666665554433321111122222222233344678889999976 


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  460 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~  460 (478)
                      |++++|+.-.+-.+|-.++|.+.+.+.+..|...+|++++++++......++..+.++.++
T Consensus       194 r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  194 RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            7999999999999999999998888888778888999999999999888888876665544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.40  E-value=9.8e-06  Score=83.46  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             HHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          322 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ..+....+..+.|.++|.+|||...+.+.++..+-.+.....++. .......+..  ...|.........+|+.|.+.|
T Consensus        87 ~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G--vgaG~~~~~~~~isEl~p~k~R  164 (599)
T PF06609_consen   87 WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG--VGAGVQELAALAISELVPNKWR  164 (599)
T ss_pred             HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcccchh
Confidence            345556667788999999999999888877666554444432222 2222111111  1233334456678999999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  446 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  446 (478)
                      ..+.++.....-.....+|.+...+....++.+.++++.....++.
T Consensus       165 ~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  165 GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            9888876654434444566665544433445566665555544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10133 L-fucose transporter; Provisional

Probab=98.40  E-value=5e-05  Score=76.98  Aligned_cols=109  Identities=13%  Similarity=0.037  Sum_probs=70.3

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          318 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       318 ~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      ......++..++.+..+.++||+|||+.+..+..+.++..+...   ...+........+.............+.+..|.
T Consensus        66 ~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~  145 (438)
T PRK10133         66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            34455677888899999999999999999887766555443321   111222222222222222222334456667787


Q ss_pred             cCcChhHHHHHHHHHHHhHhHhHHHHHHHHHh
Q 011756          395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  426 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~  426 (478)
                      .|.+.|....++.+.+..+|..++|.+...+.
T Consensus       146 ~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777899999999999999988765543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.39  E-value=7.9e-06  Score=81.07  Aligned_cols=100  Identities=20%  Similarity=0.168  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhH----H----HHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          326 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI----L----LTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       326 ~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      ...+.++.|+++||+|||+.+..+..+..+..+......+..    .    .....+..........+....+.+|.+|.
T Consensus        48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~  127 (394)
T TIGR00883        48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP  127 (394)
T ss_pred             hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence            356788999999999999998887766555444333322111    0    11111111111122234557788999999


Q ss_pred             ChhHHHHHHHHHHHhHhHhHHHHHHHHH
Q 011756          398 SMRSTGAGVAYAVGRIGGMVCPLVAVGL  425 (478)
Q Consensus       398 ~~R~~~~g~~~~~~~lg~~~~p~~~~~l  425 (478)
                      +.|+...++......+|..+++.+...+
T Consensus       128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       128 GKRGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888888765443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=98.37  E-value=1.6e-05  Score=78.26  Aligned_cols=107  Identities=13%  Similarity=0.016  Sum_probs=67.4

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      ....++..++.+..++++||+|||+.+..+....++..... ...+........+...+...........+..|.+| +.
T Consensus        42 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~  119 (355)
T TIGR00896        42 ALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR  119 (355)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch
Confidence            44456677888999999999999999887765544333222 22222211111111111111122234456678886 68


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      |+++.|+.+....+|..++|.+.+.+.+.
T Consensus       120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896       120 VGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988889999998887766554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.36  E-value=1.5e-05  Score=78.32  Aligned_cols=128  Identities=23%  Similarity=0.202  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhh-----chHHHH-HHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          330 LLTAALLVDRV-----GRKLSM-TIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       330 ~~~~~~l~dr~-----GRr~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ..+.|.++||+     |||+.+ ..+....++....+.+..   +.+....+.+....+..........+.+|.+|++.|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            67889999998     898875 444444444333333321   111122222222222222334557788999999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccc--------hhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCH--------QTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +.+.|+......+|..++|.+...+....+        +...+.+.+++.++..+..++..||.+
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999998889999999988876665554        445666666666665555555566753

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.32  E-value=1.1e-05  Score=80.84  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=77.9

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---chh-HHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSN-ILLTALLSGARMFSMGTFIIANIFAPEIYP  396 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p  396 (478)
                      +..++++.|+...++++||+|||..+..+.....+..+.+...   ... .....-+..+.. ..........|..|+.|
T Consensus        68 ~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~-~gl~~~~~pmyl~E~sP  146 (485)
T KOG0569|consen   68 IFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLA-CGLSTGLVPMYLTEISP  146 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hHHHHHHHHHHHhhcCh
Confidence            4456788899999999999999988777655443332222221   111 111111111111 11122456788899999


Q ss_pred             cChhHHHHHHHHHHHhHhHhHHHHHH-HHHhhccchhHHHH-HHHHHHHHHHHHHHhccccccC
Q 011756          397 TSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAIL-LLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       397 ~~~R~~~~g~~~~~~~lg~~~~p~~~-~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      ++.||....+......+|-.++..+. +.++... ..|+++ .+..+..+..++.+.+.||+.+
T Consensus       147 ~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~-~~W~~l~~~~~i~~~~~l~~l~~~PESPk  209 (485)
T KOG0569|consen  147 KNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE-DLWPYLLAFPLIPALLQLALLPFLPESPK  209 (485)
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC-cchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            99999998888887778777774443 3333222 223332 2223333334455556688764

>PTZ00207 hypothetical protein; Provisional

Probab=98.30  E-value=9.2e-05  Score=76.75  Aligned_cols=122  Identities=13%  Similarity=0.180  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh------chhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          329 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL------QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       329 g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      ..+..|++.||+|||+++.++..+.++..+.....      .+.+...+............+........+.|| +.||+
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            34567999999999999988877665544433332      111211111112211111223344556678887 78999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      +.|+......+|+.+.+.+...+.. .+....+++.++..++..++.+.+
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999998765544444443 233445555555555544444443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.28  E-value=9.4e-05  Score=74.97  Aligned_cols=139  Identities=12%  Similarity=-0.002  Sum_probs=82.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHh----hhchHHHHHHHH-HHHHHHHHHHHhhchh-------------HH---HHH-HHHHH
Q 011756          319 VFITSFAELPGLLTAALLVD----RVGRKLSMTIMF-IFVCIFLLPLVTLQSN-------------IL---LTA-LLSGA  376 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~d----r~GRr~~~~~~~-~~~~~~~~~~~~~~~~-------------~~---~~~-~~~~~  376 (478)
                      ..+..+..++...+.|+++|    |+|||+.++... ....+.+..+.+..+.             ..   ..+ .+...
T Consensus        45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll  124 (477)
T TIGR01301        45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL  124 (477)
T ss_pred             HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence            34555667778888999999    599999877643 3333333333221110             00   111 11111


Q ss_pred             HHHhhhhhhhhhhhcccccCcChh--HHHHHHHHHHHhHhHhHHHHHHHHHh--hc--------c-----chhHHHHHHH
Q 011756          377 RMFSMGTFIIANIFAPEIYPTSMR--STGAGVAYAVGRIGGMVCPLVAVGLV--TS--------C-----HQTAAILLLE  439 (478)
Q Consensus       377 ~~~~~g~~~~~~~~~~E~~p~~~R--~~~~g~~~~~~~lg~~~~p~~~~~l~--~~--------~-----~~~~~~~~~~  439 (478)
                      .+......++.-.+.+|+.|.+.|  +.+.++.+.+..+|+.+++.+.....  ..        .     +....|.+-+
T Consensus       125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a  204 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI  204 (477)
T ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence            122222334567899999999876  57889888888899988887654321  10        0     1123455555


Q ss_pred             HHHHHHHHHHHhcccccc
Q 011756          440 ALIVLSVVVILLIPFETK  457 (478)
Q Consensus       440 ~~~~i~~~~~~~~~pet~  457 (478)
                      ++.+++.++..+..+|..
T Consensus       205 ~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       205 ILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHeeeeeccC
Confidence            666677777777777753

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.27  E-value=1.6e-05  Score=82.29  Aligned_cols=138  Identities=20%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .....+++..|.+..+.++|++|||+.+..+.+...+..+......+.....+.-++..+...+...+..+|.+|+-|++
T Consensus        95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~  174 (513)
T KOG0254|consen   95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH  174 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh
Confidence            34556788999999999999999999988776655544444333332221111111221222233356789999999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--HQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      .|+.-.+.......+|..++ ++.+......  ++...+.+..+.+++..+. +++.||+..
T Consensus       175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            99999998888777666565 4445444332  2333444444555555555 667787653

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.26  E-value=4.9e-05  Score=75.63  Aligned_cols=135  Identities=15%  Similarity=0.087  Sum_probs=98.4

Q ss_pred             HHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHH
Q 011756           42 EVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLIL  104 (478)
Q Consensus        42 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~  104 (478)
                      .....++..+.+ +|.|.++.+.|.+.+...++.+.                 +..+.+...+..++.++++|++.+++.
T Consensus       221 ~~~~~~~~~~~l-~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (382)
T TIGR00902       221 HAAYYGFSAIYW-QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLL  299 (382)
T ss_pred             HHHHHHHHHHHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Confidence            333344444444 56899999998877755443222                 445555556666677889999999999


Q ss_pred             HHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHH
Q 011756          105 RGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS-TFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF  179 (478)
Q Consensus       105 R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~  179 (478)
                      +++.|+..|... ....|+.+. |+++|++..++++ ....+|..+++.+++.+.++.|+ ..|++.+..+++.++.
T Consensus       300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            999999998764 456788887 9999999999986 56889999999999999888887 5566666555544433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.23  E-value=1.3e-06  Score=85.15  Aligned_cols=141  Identities=13%  Similarity=0.018  Sum_probs=91.5

Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      .+...+.+.+.|++.||..||+++..|..+-.+..+...+..+-+...++-.+....-....++...++++.||...|++
T Consensus        78 ~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~  157 (493)
T KOG1330|consen   78 IVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSR  157 (493)
T ss_pred             HHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhH
Confidence            34566778999999999999999988876665544443333222322222111111123345677899999999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHHhccccccCcccch
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKGKELVN  463 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~~  463 (478)
                      ..++.+.....|+.++-.....+-.... +.+++..-+++.++..++..++.+|...+.-||
T Consensus       158 ~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  158 VLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             HHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            9999999999887776543332222222 345666677777777777777777755443333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.23  E-value=0.00013  Score=73.13  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHHhhh-----chHH-HHHHHHHHHHHHHHHHHhhc--hh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          327 LPGLLTAALLVDRV-----GRKL-SMTIMFIFVCIFLLPLVTLQ--SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       327 ~~g~~~~~~l~dr~-----GRr~-~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      .....+.++++||+     |||+ .+..+....++....+....  .+ +....+.+...++.....+....+.+|.+|+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            35668889999999     8876 45555555544333333321  11 2122222222222223334567889999999


Q ss_pred             ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          398 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       398 ~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      +.|+++.++......+|..+++.+...+.+. .++...+.+.+++.++..+. .+..||++
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~  185 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPE  185 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence            9999999999988888988888877766664 35556676666666555443 34456654

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.19  E-value=0.00019  Score=71.55  Aligned_cols=107  Identities=15%  Similarity=0.097  Sum_probs=75.3

Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      ..++....+.+|+++||+|-|+.+..+.+..+++.+...+..+.....++-+..+ ...++....+.+....+|.+.|++
T Consensus        72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llG-vaEA~~~A~~syI~~WfP~kER~r  150 (511)
T TIGR00806        72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYS-VTMAARIAYSSYIFSLVPPSRYQR  150 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHH
Confidence            4567778899999999999999988877666655544444322222222222222 223333367889999999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccch
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQ  431 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~~  431 (478)
                      +.|+.+....+|.++++.+... +...++
T Consensus       151 atsi~~sg~~vG~~Ia~~L~ql-l~s~gW  178 (511)
T TIGR00806       151 AAAYSRAAVLLGVFLSSVLGQL-LVTLGW  178 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence            9999999999999999988776 334443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=7.9e-05  Score=77.68  Aligned_cols=157  Identities=17%  Similarity=0.228  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 011756           30 AYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLS   92 (478)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~   92 (478)
                      ...++..+.+++-...+..+..++++.|++++.+.|++.+.+=+|-..                 +-.+.++.++++++.
T Consensus       100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            344466677777777777788889999999999999887776444222                 011112222222111


Q ss_pred             hh--------------------------------------------------hch--HHHHHHHHHHhhcccCch-hhHH
Q 011756           93 AF--------------------------------------------------SPN--YISLLILRGLAGAGLGSG-HVFF  119 (478)
Q Consensus        93 ~~--------------------------------------------------a~~--~~~l~~~R~l~Gig~g~~-~~~~  119 (478)
                      ++                                                  +++  +..++++-++.|+|.-.. +...
T Consensus       180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi  259 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI  259 (735)
T ss_pred             hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence            11                                                  111  225788899998887654 4567


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc----C-------------c--chHHHHHHhhHHHHHHHHHH
Q 011756          120 SWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP----I-------------L--TWRWLLALSAIPAFVLLIFI  180 (478)
Q Consensus       120 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~----~-------------~--~WR~~f~i~~i~~~l~~~~~  180 (478)
                      +|+-|.+.+++-....++......+|+++|.+++.+...    .             |  .|+.=|.+.+...++..+..
T Consensus       260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~  339 (735)
T KOG3626|consen  260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL  339 (735)
T ss_pred             ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999988888776421    1             0  26666777776666666777


Q ss_pred             HhcCCC
Q 011756          181 VFMPES  186 (478)
Q Consensus       181 ~~lpES  186 (478)
                      +++|..
T Consensus       340 f~fPk~  345 (735)
T KOG3626|consen  340 FFFPKE  345 (735)
T ss_pred             HhCccc
Confidence            778755

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.16  E-value=0.00012  Score=73.12  Aligned_cols=136  Identities=12%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---Hhhc--hhHHHHHHH---HHHHHHhhhhhhhhhh
Q 011756          318 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQ--SNILLTALL---SGARMFSMGTFIIANI  389 (478)
Q Consensus       318 ~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~---~~~~~~~~g~~~~~~~  389 (478)
                      ...+..+...++.+..|+++||+|||+.+..+....++.....   ....  .........   ...........+....
T Consensus        43 ~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  122 (396)
T TIGR00882        43 VFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA  122 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence            3455567778888999999999999998876544333222111   1110  000111111   1111111111222233


Q ss_pred             hcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          390 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       390 ~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      +..|.-  +.++...|.....+.+|..++|.+.+.+.+ .++...+.+.+.+.++..++.+...||.
T Consensus       123 ~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       123 YIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            333332  233456677888888999999988765543 4555666666666666555555555554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.11  E-value=0.011  Score=57.62  Aligned_cols=74  Identities=12%  Similarity=0.221  Sum_probs=53.4

Q ss_pred             HHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHhhHHHH
Q 011756          101 LLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT-WRWLLALSAIPAF  174 (478)
Q Consensus       101 l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-WR~~f~i~~i~~~  174 (478)
                      ..+.-.+.|+|++.. .+...+++|.+|+++|+++.++.-...-+|.++++.+...+++.++ =|..-.++..+.+
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i  167 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI  167 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence            344555667777664 3455678999999999999999999999999999998887766543 4444444444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.99  E-value=0.00023  Score=65.57  Aligned_cols=160  Identities=21%  Similarity=0.177  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH----------------HHHHHHHHHHHH
Q 011756           26 GLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS----------------ILGGALVTFVAG   89 (478)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~----------------~~~~~~~~~i~~   89 (478)
                      |..+..+.+.....+ ....++...|++++.+|++++|...+.+...+|...                +.++.....++-
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY   80 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY   80 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            444333333333333 334566778999999999999998888887666333                222222222222


Q ss_pred             HHH-----hh--hchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 011756           90 LLS-----AF--SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT  161 (478)
Q Consensus        90 ~~~-----~~--a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  161 (478)
                      ...     ..  .++++.+.+.-++.|.|.+.. .....-..+.+| ++||++.++.-...+++..+-..+...+-+...
T Consensus        81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~  159 (250)
T PF06813_consen   81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP  159 (250)
T ss_pred             HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh
Confidence            111     11  246778888888877665433 222233457787 579999999999999998887777766666666


Q ss_pred             hHHHHHHhhHHHHHHHHHHHhcCCCc
Q 011756          162 WRWLLALSAIPAFVLLIFIVFMPESP  187 (478)
Q Consensus       162 WR~~f~i~~i~~~l~~~~~~~lpESP  187 (478)
                      -+.+.+....|.++.++..+++.+-|
T Consensus       160 ~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  160 SSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeccC
Confidence            77777777778877766666654433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.94  E-value=0.0046  Score=61.65  Aligned_cols=131  Identities=18%  Similarity=0.195  Sum_probs=94.6

Q ss_pred             HhHHhhhhhcCCCcchhhHHHHHHH---------HHHHH---------HHHHHHHHHHHHHHHhhh--chHHHHHHHHHH
Q 011756           48 FVGPAVKSEWGLSSSEESLITTVVF---------AGMMS---------ILGGALVTFVAGLLSAFS--PNYISLLILRGL  107 (478)
Q Consensus        48 ~~~~~~~~~~~l~~~~~~~~~s~~~---------~G~~~---------~~~~~~~~~i~~~~~~~a--~~~~~l~~~R~l  107 (478)
                      |...+..+.+++++++..-+.+++.         .|.+.         ++.+.++..++-++.+.+  .+...++++-.+
T Consensus        47 Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~  126 (498)
T COG3104          47 YLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLAL  126 (498)
T ss_pred             HHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            4344444446688887766655542         12222         666777778887777776  478899999999


Q ss_pred             hhcccCch-hhHHHHHhhccCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH
Q 011756          108 AGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI  178 (478)
Q Consensus       108 ~Gig~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~  178 (478)
                      .++|.|.. +-..+.+.|..|++  +|-...+++..+.++|.+++|.+...+....||...|...++--.+.++
T Consensus       127 I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~  200 (498)
T COG3104         127 IIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLV  200 (498)
T ss_pred             HHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            99999987 45567788888875  3455567777788899999999999998899999999887764444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.93  E-value=9.1e-05  Score=78.42  Aligned_cols=107  Identities=9%  Similarity=0.055  Sum_probs=70.2

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc----------------------------h-------
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ----------------------------S-------  365 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~----------------------------~-------  365 (478)
                      ...+++.++.+..+++.||.|||+.+.++.++.++..+.....+                            .       
T Consensus        76 ~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  155 (633)
T TIGR00805        76 SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRP  155 (633)
T ss_pred             hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccc
Confidence            33455667788899999999999988777665544333322211                            0       


Q ss_pred             ----------h--HHHHHHHHHHHH----HhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          366 ----------N--ILLTALLSGARM----FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       366 ----------~--~~~~~~~~~~~~----~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                                .  .....++....+    .....++....+..|.+|++.|+...|+.+....+|..+++.+.+.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       156 TQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             cccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence                      0  000111112221    1222345567899999999999999999999999999999988776653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.93  E-value=0.00014  Score=72.04  Aligned_cols=129  Identities=22%  Similarity=0.271  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHhhhhh-hhhhhhcccccCcC--hhH
Q 011756          329 GLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTF-IIANIFAPEIYPTS--MRS  401 (478)
Q Consensus       329 g~~~~~~l~dr~-GRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~~E~~p~~--~R~  401 (478)
                      ..+++||++||+ |+|+.+..+.++..+--+.+....   .......+..+.  ...|.. +..-...+|++|++  .|-
T Consensus        77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~--iG~Gl~K~NiS~llg~ly~~~DprrD  154 (498)
T COG3104          77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII--VGTGLFKPNISSLLGELYPKDDPRRD  154 (498)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH--hccccccccHHHHHHHhcCCCCcccC
Confidence            457899999996 999998888766554333333221   111222222222  122222 33456778999773  378


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCc
Q 011756          402 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  459 (478)
Q Consensus       402 ~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~  459 (478)
                      .+.++-+...++|++++|.+.+++-+..++...|...+.-..++.+..++.....++.
T Consensus       155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence            8999999999999999999998876665555566555555556655555544333443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.91  E-value=0.004  Score=62.99  Aligned_cols=81  Identities=22%  Similarity=0.333  Sum_probs=63.3

Q ss_pred             HhhcccCch---hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHH-HHHh
Q 011756          107 LAGAGLGSG---HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVF  182 (478)
Q Consensus       107 l~Gig~g~~---~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~-~~~~  182 (478)
                      +.|+.-|..   ....+|+++.+..++|....++....+..+..++|..+..+....|-=..|.+..+..++..+ .+.+
T Consensus       119 ~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~  198 (463)
T KOG2816|consen  119 LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLF  198 (463)
T ss_pred             hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc
Confidence            555543332   234578999999999999999999999999999999988877777788888888877777644 5667


Q ss_pred             cCCCc
Q 011756          183 MPESP  187 (478)
Q Consensus       183 lpESP  187 (478)
                      +|||-
T Consensus       199 l~Esl  203 (463)
T KOG2816|consen  199 LPESL  203 (463)
T ss_pred             ccccc
Confidence            99983

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.90  E-value=0.00044  Score=68.22  Aligned_cols=174  Identities=12%  Similarity=0.125  Sum_probs=113.0

Q ss_pred             cccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHH---HHH------
Q 011756            7 RLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAG---MMS------   77 (478)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G---~~~------   77 (478)
                      +++.+++|.++.....++-..++..++...+.|.+|-+...|-....+.. +.++...|.+.|...+.   .+.      
T Consensus       205 ~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~-~~g~~~~G~l~s~~v~~E~~~m~~~p~li  283 (412)
T PF01306_consen  205 KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSA-GQGNQMYGYLWSVQVFLEALMMFFSPWLI  283 (412)
T ss_dssp             -----HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccChhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666666554445545566667777788999987555543322211 12233355555554321   111      


Q ss_pred             --------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHH-HHHHHHHHHH
Q 011756           78 --------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSV  147 (478)
Q Consensus        78 --------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~  147 (478)
                              ++++..+.++=-+.+++++|.+.+.+.+.+.|+-.+... ....|+++.+|+|...+...+ .+...++|..
T Consensus       284 ~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~  363 (412)
T PF01306_consen  284 NRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII  363 (412)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred             HhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence                    344444445545678899999999999999998887764 456799999999988877766 4677889999


Q ss_pred             HHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHH
Q 011756          148 SEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV  181 (478)
Q Consensus       148 ~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~  181 (478)
                      +.+.+++.+.++.|.|..|++.+...+...++..
T Consensus       364 i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~  397 (412)
T PF01306_consen  364 ILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISA  397 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhe
Confidence            9999999998999999999888876665544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.86  E-value=0.00081  Score=66.86  Aligned_cols=125  Identities=14%  Similarity=0.055  Sum_probs=86.5

Q ss_pred             hhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchh-
Q 011756           55 SEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-  116 (478)
Q Consensus        55 ~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-  116 (478)
                      +|.|.++.+.|.+.+...++...                 +..+.+...++.+..+.+++++.+++..++.|++.+... 
T Consensus       233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            56888888888877755433222                 333444444444556678899999999999999888653 


Q ss_pred             hHHHHHhhccCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHH
Q 011756          117 VFFSWFMEFVPPSNRGKWMVVFS-TFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV  181 (478)
Q Consensus       117 ~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~  181 (478)
                      ....++.|. |++++++..+..+ .....|..+++.+++.+.+..|+. .++..++.+++.++.+.
T Consensus       313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~~~  376 (382)
T PRK11128        313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFIRP  376 (382)
T ss_pred             HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHH
Confidence            445677776 6667888888876 556778889999999988888884 56655555554444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.85  E-value=0.0073  Score=59.40  Aligned_cols=104  Identities=25%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011756           78 ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM  157 (478)
Q Consensus        78 ~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~  157 (478)
                      ......++.++-++.++++|.+.=+++=.+.+++.|.+.+...=++...|+    ...+.|..+.+.+.++|+.....+.
T Consensus        92 i~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT  167 (402)
T PF02487_consen   92 ILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGK----SSLSAWSSGTGGAGLVGALYYLGLT  167 (402)
T ss_pred             HHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCc----cccccccCCcChhhHHHHHHHHHHH
Confidence            344555666666778889999888888888888777653332112334443    3467777788878888887766555


Q ss_pred             cCcch--HHHHHHhhH-HHHHHHHHHHhcCCC
Q 011756          158 PILTW--RWLLALSAI-PAFVLLIFIVFMPES  186 (478)
Q Consensus       158 ~~~~W--R~~f~i~~i-~~~l~~~~~~~lpES  186 (478)
                      . .++  |..+.+... |.+..+..++.+|.+
T Consensus       168 ~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  168 T-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             H-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4 444  666666554 444444444455544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00022  Score=73.07  Aligned_cols=158  Identities=14%  Similarity=0.198  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-------------------HHHHHHHHHH
Q 011756           27 LALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-------------------ILGGALVTFV   87 (478)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-------------------~~~~~~~~~i   87 (478)
                      ..++...++..+...-.....+..|...++.+.++++.+.+.|...+.-++                   ..++.++..+
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            455566677777777777778888888889999999999888886543221                   4555666666


Q ss_pred             HHHHHhhhchHHHHHHHHHHhhcccCchhhHH-HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHH
Q 011756           88 AGLLSAFSPNYISLLILRGLAGAGLGSGHVFF-SWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT-WRWL  165 (478)
Q Consensus        88 ~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~~~-~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-WR~~  165 (478)
                      +.+...+++++..+.+.-.+.|+..|...... ..+.|..+.++-..+.|+.....+++.+.++++++.+.+..+ |...
T Consensus       378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~  457 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA  457 (509)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence            66788899999999999999999998875544 357899999999999999999999999999999998777665 9999


Q ss_pred             HHHhhHHHHHHHHHHHhcC
Q 011756          166 LALSAIPAFVLLIFIVFMP  184 (478)
Q Consensus       166 f~i~~i~~~l~~~~~~~lp  184 (478)
                      |...++..++....++..|
T Consensus       458 f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  458 FYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhhcChHHHHHHHHHHHhH
Confidence            9999987777766655555

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.80  E-value=0.0015  Score=66.54  Aligned_cols=148  Identities=18%  Similarity=0.257  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHH----HHHHH---------------HHHHHHHHHHHHHHHhh---
Q 011756           37 FSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVF----AGMMS---------------ILGGALVTFVAGLLSAF---   94 (478)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~----~G~~~---------------~~~~~~~~~i~~~~~~~---   94 (478)
                      ..|++.. .+++.....++++|+++.+...+.-...    .|...               ++.+..++.+..+...+   
T Consensus       293 ~~dg~~t-i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~  371 (477)
T PF11700_consen  293 YSDGVNT-IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFW  371 (477)
T ss_pred             HHHHHHH-HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4577763 4555555667789999888544332221    12111               33333333333333333   


Q ss_pred             -----hchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHH
Q 011756           95 -----SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT-WRWLLA  167 (478)
Q Consensus        95 -----a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-WR~~f~  167 (478)
                           ..+-+.+.+.=.+.|+..|+.. ..-++++|..|+++.+...|++....-....++|.+...+.+..| =|+-+.
T Consensus       372 ~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~  451 (477)
T PF11700_consen  372 PSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL  451 (477)
T ss_pred             hcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence                 4567788889999999999864 456789999999999999999999999999999998887766544 788777


Q ss_pred             HhhHHHHHHHHHHHhcCC
Q 011756          168 LSAIPAFVLLIFIVFMPE  185 (478)
Q Consensus       168 i~~i~~~l~~~~~~~lpE  185 (478)
                      ...+..++.+++.+++++
T Consensus       452 ~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  452 FLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHHHHHHHHHHhhccc
Confidence            666665555666666654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.00039  Score=70.39  Aligned_cols=132  Identities=15%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      ....+.+++.+-++++.||+|-|+++..+..+.++..+....  ....+...++-+..++.....++.+..+.+.-.|++
T Consensus        81 s~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~  160 (466)
T KOG2532|consen   81 SFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN  160 (466)
T ss_pred             HHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence            334677888899999999999999988877766654433322  222222222223333333345677888999999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHhc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLI  452 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~  452 (478)
                      .|++..++..+..++|.+++-.+.+.+-+. .|+...|++++++.++-.++.+++
T Consensus       161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  161 ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887777888777 677788888888777655554444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.79  E-value=0.00057  Score=69.14  Aligned_cols=138  Identities=19%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             HHHHhhhhhHHHHHHHHHhh----hchHHH-HHHHHHHHHHHHHHHHhhch----hHHHHHH--HHHHHHHhhhhhhhhh
Q 011756          320 FITSFAELPGLLTAALLVDR----VGRKLS-MTIMFIFVCIFLLPLVTLQS----NILLTAL--LSGARMFSMGTFIIAN  388 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr----~GRr~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~g~~~~~~  388 (478)
                      .+..+...+...+.|+++||    +|||+. +..+....++..+.+....+    .......  .............+..
T Consensus        42 ~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (437)
T TIGR00792        42 LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYW  121 (437)
T ss_pred             HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHh
Confidence            34445567778889999997    677664 44554444433332222111    1111111  1111111111122346


Q ss_pred             hhccccc-CcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc-------cchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          389 IFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-------CHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       389 ~~~~E~~-p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                      .+.+|+. +.+.|++..++....+.+|+.+++.+.+++...       .++...+.+.+++.++..++.++..||++
T Consensus       122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            6778887 568899999998888888888777665555432       12233455556565655555556666654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.75  E-value=0.0023  Score=63.70  Aligned_cols=71  Identities=21%  Similarity=0.154  Sum_probs=50.9

Q ss_pred             hhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          386 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       386 ~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      ....+..|..+.+.++...+.......+|..+++.....+.+..++...+.+.+++.++..+..++.+||.
T Consensus       117 ~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       117 ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34556778888888888877776666788888887766676666767778777777776666666665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.74  E-value=0.00038  Score=70.26  Aligned_cols=137  Identities=20%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  402 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~  402 (478)
                      ++..+..+.+.|.++||.|||..+......+.+-.+...+..  +...+ .....+.....++..+.+.++.-..+.|..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence            344555677888999999999988776554443222222211  21111 111112223345567889999999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcccc
Q 011756          403 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELV  462 (478)
Q Consensus       403 ~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~  462 (478)
                      ..|+.+..-..+..++|.+...+....+....+.+-.+..++..+...+..||+...+..
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            999999988888999999888777665555666777777788888888889998765443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.67  E-value=0.0013  Score=60.53  Aligned_cols=134  Identities=13%  Similarity=0.057  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 011756          282 VYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV  361 (478)
Q Consensus       282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~  361 (478)
                      +.|....+.|.+.+..+           .++...........++.-.| +..|.+.|+.|.|..+.++.....+....+.
T Consensus        17 t~Y~Fs~yS~~Lk~~l~-----------~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~   84 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLG-----------YSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLW   84 (250)
T ss_pred             cccchhhhhHHHHHHhC-----------CCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            44566666676654322           22222222334455655555 7789999999999998887765544322222


Q ss_pred             h--hc----hh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          362 T--LQ----SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       362 ~--~~----~~-~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      .  ..    .+ +......+..................+-|| +.||++.|+.-...-+++.+-..+...+...
T Consensus        85 l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   85 LAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            1  11    11 111111111111111111223344558898 5899999999999989888877776655543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.66  E-value=6e-07  Score=91.40  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      .....++.++|++++|+++||+|||+.+..+.....+..+......   +.+.....-+..++...+.......+..|..
T Consensus        52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~  131 (451)
T PF00083_consen   52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIA  131 (451)
T ss_pred             HHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455577889999999999999999988776655444333333322   2222222222222222334556789999999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHH
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVA  422 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~  422 (478)
                      |++.|+...++......+|..++..+.
T Consensus       132 ~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  132 PPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999888877777766665543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=97.51  E-value=0.0058  Score=62.52  Aligned_cols=125  Identities=14%  Similarity=0.140  Sum_probs=68.9

Q ss_pred             HHHHHHHhhhc-----hHHHHHHHHHHHH-HHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHH-
Q 011756          331 LTAALLVDRVG-----RKLSMTIMFIFVC-IFLLPLVTLQSN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST-  402 (478)
Q Consensus       331 ~~~~~l~dr~G-----Rr~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~-  402 (478)
                      .+.|.++||++     ||+.+..+..+.+ +....+....+. .....+.+...+.....-...-.+..|..+ +.++. 
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~  156 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAG  156 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcC
Confidence            34889999996     6666666554442 222222221111 111112222222222222345677778887 44443 


Q ss_pred             --HHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 011756          403 --GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  457 (478)
Q Consensus       403 --~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~  457 (478)
                        ..++......+|..+++.+.+.+.+..++...+.+.+++.++. ....++.||.+
T Consensus       157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence              3444445455788888888887776656666676766666665 33445557764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.015  Score=56.51  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             hhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHhhhh-hhhhhhhcccccCcCh
Q 011756          324 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGT-FIIANIFAPEIYPTSM  399 (478)
Q Consensus       324 ~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~E~~p~~~  399 (478)
                      .+.....+-.+++.+|+|+|+-++.+..+.++....+.   ...+.......++... ...+. -...+.+.+.+.|.+.
T Consensus        59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila-~Gi~~LetaaNp~v~~lg~~~~  137 (422)
T COG0738          59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA-SGIGLLETAANPYVTLLGKPES  137 (422)
T ss_pred             HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-hhhHHHHhccchHHHHhCCchh
Confidence            45566778888999999999998888776655433332   1111111111111111 11111 2345778888888888


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                      .+.=..++..+..+|++++|.+...++.
T Consensus       138 a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         138 AAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            8888899999999999999999888776

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0022  Score=65.34  Aligned_cols=139  Identities=17%  Similarity=0.174  Sum_probs=96.8

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcCh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  399 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~  399 (478)
                      .+..++.++|.+.++.+.||+.-.+.+..+.+..+++.+.....++.+...++-+..+.+=.+.++..-.+.+--|..+.
T Consensus        88 t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e  167 (495)
T KOG2533|consen   88 TVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE  167 (495)
T ss_pred             HHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh
Confidence            34456788899999999999996665555444444333222223333333344344444444567777888999999999


Q ss_pred             hHHHHHHHHHHHhHhHhHHHHHHHHHhh------ccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          400 RSTGAGVAYAVGRIGGMVCPLVAVGLVT------SCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       400 R~~~~g~~~~~~~lg~~~~p~~~~~l~~------~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      |++-+|+-++.+.+|+++++.+...+..      ..++.+.|++-+++.++.++++++++|+-..
T Consensus       168 ~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  168 RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999999999999999999998877532      1234567788888888888888888876443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.26  Score=49.57  Aligned_cols=60  Identities=12%  Similarity=0.042  Sum_probs=44.2

Q ss_pred             hchHHHHHHHHHHhhcccCchhhH-HHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011756           95 SPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAW  154 (478)
Q Consensus        95 a~~~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~  154 (478)
                      -+|=..+++.-.+.|+|.+..+.. ..|++|.++++.+.+..++.=.....+.++|+.+-.
T Consensus        99 ~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen   99 FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             hcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            466677889999999988765544 468999999999999887765555556566555443

>PRK09669 putative symporter YagG; Provisional

Probab=97.19  E-value=0.0057  Score=62.16  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=58.0

Q ss_pred             HhhhhhHHHHHHHHHhh----hchHHH-HHHHHHHHHHHHHHHHhhc----hh--HHHHHHHHHHHHHhhhhhhhhhhhc
Q 011756          323 SFAELPGLLTAALLVDR----VGRKLS-MTIMFIFVCIFLLPLVTLQ----SN--ILLTALLSGARMFSMGTFIIANIFA  391 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr----~GRr~~-~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~g~~~~~~~~~  391 (478)
                      .+...+...+.|+++||    +|||+. +.++....++.........    ..  ....+..............+...+.
T Consensus        55 ~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~  134 (444)
T PRK09669         55 RVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMP  134 (444)
T ss_pred             HHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhH
Confidence            34455566778899998    677655 4455444433332222111    11  1111111111111112233446788


Q ss_pred             cccc-CcChhHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          392 PEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       392 ~E~~-p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                      +|+. +.+.|++..++-..++.+|+.+++.+..++..
T Consensus       135 ~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~  171 (444)
T PRK09669        135 GAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVD  171 (444)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887 45789999999888888888888766555543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.18  E-value=0.027  Score=56.24  Aligned_cols=81  Identities=19%  Similarity=0.372  Sum_probs=59.1

Q ss_pred             HHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhcCcc------hHHHHHHhhHHHHHH
Q 011756          105 RGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF-WTFGSVSEAALAWIVMPILT------WRWLLALSAIPAFVL  176 (478)
Q Consensus       105 R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~------WR~~f~i~~i~~~l~  176 (478)
                      -.+.|+..|... ....|+.|..|++.|++..+++... .++|..+++.+++.+.++.|      |...+.+.+...++.
T Consensus       308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~  387 (400)
T PF03825_consen  308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVI  387 (400)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            456898888764 5567899999999999999998874 68999999999998876543      556666665544444


Q ss_pred             HH-HHHhcCC
Q 011756          177 LI-FIVFMPE  185 (478)
Q Consensus       177 ~~-~~~~lpE  185 (478)
                      .+ +..+++|
T Consensus       388 ~~~f~~~fk~  397 (400)
T PF03825_consen  388 LVLFVILFKP  397 (400)
T ss_pred             HHHHHhhccC
Confidence            33 3334444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.14  E-value=0.028  Score=52.79  Aligned_cols=137  Identities=28%  Similarity=0.357  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHhHHhhhhhcCCCc--chhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhch--
Q 011756           39 EAMEVMILSFVGPAVKSEWGLSS--SEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPN--   97 (478)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~--   97 (478)
                      ...+........+....+++.+.  .+.++..+...++...                 +..+......+.+..++..+  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
T COG0477          14 LGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG   93 (338)
T ss_pred             HHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence            33555555556666666665444  3556665555443222                 11122112333455566665  


Q ss_pred             HHHHHHHHHHhhcccCch-hhHHHHHhhccCC-CCchhHHHHHHH-HHHHHHHHHHHHHHHHhc--CcchHHHHHHhhHH
Q 011756           98 YISLLILRGLAGAGLGSG-HVFFSWFMEFVPP-SNRGKWMVVFST-FWTFGSVSEAALAWIVMP--ILTWRWLLALSAIP  172 (478)
Q Consensus        98 ~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~~G~~~~~~~~~~~~~--~~~WR~~f~i~~i~  172 (478)
                      ...+++.|++.|++.|.. +....++.|+.|+ ++|+...+.... ...+|.++++.++..+..  ..+||..|.+....
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            899999999999988865 4556788999998 789999888888 577888888766655433  36899977666655


Q ss_pred             HHH
Q 011756          173 AFV  175 (478)
Q Consensus       173 ~~l  175 (478)
                      ...
T Consensus       174 ~~~  176 (338)
T COG0477         174 GLL  176 (338)
T ss_pred             HHH
Confidence            543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.11  E-value=0.0022  Score=64.88  Aligned_cols=128  Identities=17%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHh----hhchHHHHH-HHHHHHHHHHHHHHhhch----hH---HH-HHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          328 PGLLTAALLVD----RVGRKLSMT-IMFIFVCIFLLPLVTLQS----NI---LL-TALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       328 ~g~~~~~~l~d----r~GRr~~~~-~~~~~~~~~~~~~~~~~~----~~---~~-~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      +.-.+.|.++|    |+|||+..+ ++....++....+....+    ..   .. .+..+...........+..++.+|+
T Consensus        52 i~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~l  131 (428)
T PF13347_consen   52 ITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPEL  131 (428)
T ss_pred             hcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccc
Confidence            33447778999    789888654 455555544433332211    11   11 1111111111122233457789999


Q ss_pred             cCc-ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-------hhHHHHHHHHHHHHHHHHHHhcccc
Q 011756          395 YPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  455 (478)
Q Consensus       395 ~p~-~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~pe  455 (478)
                      .+. +.|.+..+.-..++.+|+.+...+.+.+....+       ......+++++..++.++..+..+|
T Consensus       132 t~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  132 TPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             cccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            985 789999999999998888766666666554332       1223345555556666666666667

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.00  E-value=0.15  Score=49.04  Aligned_cols=134  Identities=19%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             hhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhh-----hhhhcccccCcCh
Q 011756          325 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFII-----ANIFAPEIYPTSM  399 (478)
Q Consensus       325 ~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~E~~p~~~  399 (478)
                      ...+-..+.|.+.||+|||+..+...+.-++..+.-.......+...-+..+. ...-.+..     ..-+-..-+|.+.
T Consensus        81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~  159 (354)
T PF05631_consen   81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEW  159 (354)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            34444566778999999999876544443333332221111111111111111 01111111     1112234467776


Q ss_pred             hHHHHHHHHHHH-hHhHhHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHhccccccCc
Q 011756          400 RSTGAGVAYAVG-RIGGMVCPLVAVGLVTSC--HQTAAILLLEALIVLSVVVILLIPFETKGK  459 (478)
Q Consensus       400 R~~~~g~~~~~~-~lg~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~pet~g~  459 (478)
                      .+.-.+.+...+ .+-++.+..+...+.+..  ++..+|..-..+.+++.+++...-+|..|.
T Consensus       160 L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  160 LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            666666555333 344555555544444333  234566665566666666665544676554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.99  E-value=0.023  Score=58.23  Aligned_cols=102  Identities=12%  Similarity=0.000  Sum_probs=56.4

Q ss_pred             hhhhhHHHHHHHHHh----hhchHHH-HHHHHHHHHHHHHHHHhhc--hhH--HHHHH-H-HHHHHHhhhhhhhhhhhcc
Q 011756          324 FAELPGLLTAALLVD----RVGRKLS-MTIMFIFVCIFLLPLVTLQ--SNI--LLTAL-L-SGARMFSMGTFIIANIFAP  392 (478)
Q Consensus       324 ~~~~~g~~~~~~l~d----r~GRr~~-~~~~~~~~~~~~~~~~~~~--~~~--~~~~~-~-~~~~~~~~g~~~~~~~~~~  392 (478)
                      +...+.-.+.|+++|    |+|||+. +.++...+++....+....  +..  ....+ . .....+......+..++.+
T Consensus        53 i~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~  132 (473)
T PRK10429         53 IWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVP  132 (473)
T ss_pred             HHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhH
Confidence            444556667889999    5599654 4555555444433222211  111  11111 1 1111111122334567888


Q ss_pred             ccc-CcChhHHHHHHHHHHHhHhHhHHHHHHHHH
Q 011756          393 EIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  425 (478)
Q Consensus       393 E~~-p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l  425 (478)
                      |+- +.+.|....++-..++.+|+.+.+.+..++
T Consensus       133 ~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~  166 (473)
T PRK10429        133 TLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF  166 (473)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988 579999999987777888777766554444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.96  E-value=0.015  Score=55.15  Aligned_cols=99  Identities=17%  Similarity=0.308  Sum_probs=68.5

Q ss_pred             HhhhchHHHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHh
Q 011756           92 SAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI--LTWRWLLALS  169 (478)
Q Consensus        92 ~~~a~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~WR~~f~i~  169 (478)
                      .-+.++...+=+.-+..|...+.....++|+-+..+|+++.++.+......-.|...++.++-.+...  .+.+.+=.+.
T Consensus        89 lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~IS  168 (433)
T KOG3810|consen   89 LVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYIS  168 (433)
T ss_pred             HHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhh
Confidence            34556777777777777766665555677888999999999999999988888988888888776543  3455544444


Q ss_pred             hHHHHHHHHHHHhcCCCchhh
Q 011756          170 AIPAFVLLIFIVFMPESPRYL  190 (478)
Q Consensus       170 ~i~~~l~~~~~~~lpESP~~l  190 (478)
                      -....+.....+++|..||-+
T Consensus       169 L~~~~ia~~~A~fLP~v~rSl  189 (433)
T KOG3810|consen  169 LAEVTIAVLLALFLPRVKRSL  189 (433)
T ss_pred             HHHHHHHHHHHhhCCCCchhh
Confidence            333344455566777666533

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.96  E-value=0.013  Score=58.88  Aligned_cols=127  Identities=12%  Similarity=0.119  Sum_probs=83.1

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      +.-.+.++...+.+.++.|+|+-+++..+..+...=++.+...+++|...-+-+.........|..+-+|.+...|++.|
T Consensus       414 ~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~  493 (618)
T KOG3762|consen  414 LCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLR  493 (618)
T ss_pred             hhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Confidence            34456788888999999999999988877666555455555555666444343444444445566777899999999999


Q ss_pred             HHHHHHHHHHHh-HhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 011756          401 STGAGVAYAVGR-IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVV  447 (478)
Q Consensus       401 ~~~~g~~~~~~~-lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~  447 (478)
                      ++++|+....-. +|-.++.++.+.+....+....|.+++..+++.++
T Consensus       494 at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  494 ATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             HHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            999999877653 33334444444445555544555555554444433

>PRK09848 glucuronide transporter; Provisional

Probab=96.89  E-value=0.078  Score=53.90  Aligned_cols=79  Identities=20%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHhhh--chHHHHHHHHHHhhcccCchh-hHHHHHhhccCCC-------CchhHHHHHHHHHHHHHHH
Q 011756           79 LGGALVTFVAGLLSAFS--PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPS-------NRGKWMVVFSTFWTFGSVS  148 (478)
Q Consensus        79 ~~~~~~~~i~~~~~~~a--~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~-------~Rg~~~~~~~~~~~~G~~~  148 (478)
                      ..+.++..++.+...+.  ++++.+++.-++.|+|.+... ...+...|..|.+       ++|...+..+....+|..+
T Consensus       298 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai  377 (448)
T PRK09848        298 LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence            33444444444444443  356677778888898887653 4445566666543       4699999999999999999


Q ss_pred             HHHHHHHHh
Q 011756          149 EAALAWIVM  157 (478)
Q Consensus       149 ~~~~~~~~~  157 (478)
                      ++.+...+.
T Consensus       378 g~~i~g~~l  386 (448)
T PRK09848        378 GGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHH
Confidence            888776554

>PRK11462 putative transporter; Provisional

Probab=96.85  E-value=0.04  Score=56.24  Aligned_cols=103  Identities=16%  Similarity=0.108  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHHhh----hchHHHHH-HHHHHHHHHHHHHHhhc--h--h-HHHHH-HHHHHHHHhhhhhhhhhhhcccc
Q 011756          326 ELPGLLTAALLVDR----VGRKLSMT-IMFIFVCIFLLPLVTLQ--S--N-ILLTA-LLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       326 ~~~g~~~~~~l~dr----~GRr~~~~-~~~~~~~~~~~~~~~~~--~--~-~~~~~-~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      -.+.-.+.|+++||    +|||+..+ ++....++....+....  +  . ..... .......+......+.+++.+|+
T Consensus        58 Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~l  137 (460)
T PRK11462         58 DAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVI  137 (460)
T ss_pred             HHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence            34455677899996    58877544 45444443333222111  1  1 11111 11111111122223456788898


Q ss_pred             cC-cChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          395 YP-TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       395 ~p-~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      -+ .+.|++..++-...+.+|+.+++.+..++...
T Consensus       138 t~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~  172 (460)
T PRK11462        138 TNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL  172 (460)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87 68999999999999999988888776665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.80  E-value=0.44  Score=47.83  Aligned_cols=102  Identities=17%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHH----HHHHHhhchh--HHHHHHHHHHHHHh-hhhhh---hhhh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIF----LLPLVTLQSN--ILLTALLSGARMFS-MGTFI---IANI  389 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~-~g~~~---~~~~  389 (478)
                      .+..+.++.|.+...++.+|+|-.+.=.++...-..+    ...+....++  ......++.+.... .|.|.   ...-
T Consensus       300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~q  379 (432)
T PF06963_consen  300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQ  379 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4556677888999999999999887655544322111    1122222211  22222222222222 23332   3467


Q ss_pred             hcccccCcChhHHHHHHHHHHHhHhHhHHHHH
Q 011756          390 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV  421 (478)
Q Consensus       390 ~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~  421 (478)
                      +..|..|.+.||+-.|.=+...++...+.-.+
T Consensus       380 i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  380 IMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             hhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999877765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.79  E-value=0.1  Score=50.28  Aligned_cols=135  Identities=17%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             HHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChh
Q 011756          321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  400 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R  400 (478)
                      ....+..+|+...+.++|++|||+.....+...++....-....+.....++-... .+..|..+..-.+-.|..|...|
T Consensus       121 ~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~-~~g~gg~pv~~~~yle~lp~~~r  199 (528)
T KOG0253|consen  121 SVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALW-GFGVGGLPVDSAIYLEFLPSSHR  199 (528)
T ss_pred             HHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHH-hccCCCccHhHHHHHHhccCcCC
Confidence            34466788889999999999999988777666655443322211111112222222 22334455555566699999999


Q ss_pred             HHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          401 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       401 ~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      .+-+-+. ++..+|..+...+.-..+...++. +.+++....+.-....+++.||..+
T Consensus       200 ~~~~V~~-~~waig~v~ea~law~vm~~~gwr-~~l~~~~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  200 WLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR-YLLFTSSTPLMFAARFLVWVYESPR  255 (528)
T ss_pred             CcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHhHHHHHHHHHhhcccCcc
Confidence            9988777 666677777766554444444433 3333333333334455666778654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.71  E-value=0.36  Score=49.02  Aligned_cols=41  Identities=7%  Similarity=-0.164  Sum_probs=37.4

Q ss_pred             hhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHh
Q 011756          386 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  426 (478)
Q Consensus       386 ~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~  426 (478)
                      ..|.+.+|+++.+.-.+-.++....+++|.++++.+...+.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999998877654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.66  E-value=0.07  Score=52.31  Aligned_cols=160  Identities=19%  Similarity=0.247  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHH----HHHH-------------HHHHHHHHHH
Q 011756           25 QGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFA----GMMS-------------ILGGALVTFV   87 (478)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~----G~~~-------------~~~~~~~~~i   87 (478)
                      +...++++- -...|+.+. .+++...--..++|+++.|..++.-...+    |..+             +..+.++.++
T Consensus       253 ~i~~FLiA~-~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~  330 (438)
T COG2270         253 NLVLFLIAR-FFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI  330 (438)
T ss_pred             chHHHHHHH-HHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence            334444443 335677763 44444444456999999998776554432    2222             4555556666


Q ss_pred             HHHHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHH
Q 011756           88 AGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI-LTWRWL  165 (478)
Q Consensus        88 ~~~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~WR~~  165 (478)
                      .++..-+...-..+.++=.+.|...|+.. ..-+|+.+..|+++-|+..++++..--.+..++|.+...+.+. .+=|.-
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g  410 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG  410 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence            65555555555566677788899888864 4568999999999999999999999988999999887766543 345666


Q ss_pred             HHHhhHHHHHHHHHHHhcCCC
Q 011756          166 LALSAIPAFVLLIFIVFMPES  186 (478)
Q Consensus       166 f~i~~i~~~l~~~~~~~lpES  186 (478)
                      +....+...+-++..+++|+.
T Consensus       411 ~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         411 VLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhhHhhEEeecCC
Confidence            555554444445555566653

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.40  E-value=0.031  Score=55.23  Aligned_cols=161  Identities=15%  Similarity=0.106  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHH--H------------HHHH-------------
Q 011756           25 QGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVF--A------------GMMS-------------   77 (478)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~--~------------G~~~-------------   77 (478)
                      |.+-++..+.-|++--......+.....+-+..+..+.+... -..+-  .            |+-+             
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~-~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i  380 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY-HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI  380 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH-HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence            445666666667664444444445555566656654443322 11110  0            1100             


Q ss_pred             HHHHHHHHHHHHHHHhhhch-H-------HHHHHHHHHhhcccCchhhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHH
Q 011756           78 ILGGALVTFVAGLLSAFSPN-Y-------ISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE  149 (478)
Q Consensus        78 ~~~~~~~~~i~~~~~~~a~~-~-------~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~  149 (478)
                      .+.+..++.+..+..+...| .       ....+.-++.-+|-+..  ...+-+|.+|.+.||..-++....--.|.+++
T Consensus       381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~t--tfivpaE~FParvR~t~hGIsAA~GK~GAivg  458 (538)
T KOG0252|consen  381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNAT--TFIVPAEIFPARVRSTCHGISAASGKAGAIVG  458 (538)
T ss_pred             HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCce--eEEeehhhchHHHhhhhhhHHHHhccchHHHH
Confidence            34455566666666666666 1       22333333443444332  22235899999999999999999988999988


Q ss_pred             HHHHHHHhc-----CcchHHHHHHhhHHHHHHHHHHHhcCCCch
Q 011756          150 AALAWIVMP-----ILTWRWLLALSAIPAFVLLIFIVFMPESPR  188 (478)
Q Consensus       150 ~~~~~~~~~-----~~~WR~~f~i~~i~~~l~~~~~~~lpESP~  188 (478)
                      ......+.+     ..+-|+.|++.+...++..+..+++|||.+
T Consensus       459 ~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  459 AFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            877766665     568999999998888888888888999843

>TIGR01272 gluP glucose/galactose transporter

Probab=96.26  E-value=0.24  Score=47.69  Aligned_cols=126  Identities=16%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             HHHHHHHHhHHhhhh--hcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHH
Q 011756           41 MEVMILSFVGPAVKS--EWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISL  101 (478)
Q Consensus        41 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l  101 (478)
                      .|....+.....+++  .+|+++++.+...+.+..++++                 +..+..+..++.++....++...+
T Consensus       155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~  234 (310)
T TIGR01272       155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM  234 (310)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            555554444444442  3689999999888887666554                 222222333333333333333222


Q ss_pred             HHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHh
Q 011756          102 LILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALS  169 (478)
Q Consensus       102 ~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~  169 (478)
                       .+=++.|++.+.. +...+...|..|++ .++..++.. ...+|..+.|.+.+.+.+..|-|..|++.
T Consensus       235 -~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       235 -WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-LAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-HHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence             3444677777665 34456666766654 556667654 45578888998888888888888887743

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.23  E-value=0.15  Score=51.25  Aligned_cols=136  Identities=17%  Similarity=0.108  Sum_probs=72.8

Q ss_pred             hhhHHHHHHHHHhh----hchHHHH-HHHHHHHHHHHHHHHhhc-----hhHH-HHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          326 ELPGLLTAALLVDR----VGRKLSM-TIMFIFVCIFLLPLVTLQ-----SNIL-LTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       326 ~~~g~~~~~~l~dr----~GRr~~~-~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      -.+.-.+.|.++||    +|||+.. +++.+..++.........     .... ..+.......+....+-+..++.+|+
T Consensus        61 DAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~i  140 (467)
T COG2211          61 DAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEI  140 (467)
T ss_pred             HHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhh
Confidence            34455667788886    5777654 445444443332222211     1111 11111222222223334456788888


Q ss_pred             cCc-ChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccch---h-HHHHHHHHHHHHHHHHHHhccccccCccc
Q 011756          395 YPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ---T-AAILLLEALIVLSVVVILLIPFETKGKEL  461 (478)
Q Consensus       395 ~p~-~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~---~-~~~~~~~~~~~i~~~~~~~~~pet~g~~l  461 (478)
                      -+. +.|.+..+.=..++.+|+.+...+.+++....+.   . +.......+++++.+..+++...+|.|..
T Consensus       141 T~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         141 TQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            654 8899999999999999988888887777654332   1 22223333444444444444445555554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.22  E-value=0.023  Score=42.49  Aligned_cols=62  Identities=16%  Similarity=0.290  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchHHHH
Q 011756           40 AMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNYISL  101 (478)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~~~l  101 (478)
                      +.-|+..+...|.+++|.++|.++.|++.|.-++|+.+                 +..+.+...+..+.+++..++..+
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            46688888899999999999999999999999988776                 334455555566666666665443

Note that many members are hypothetical proteins.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.16  E-value=0.2  Score=53.25  Aligned_cols=121  Identities=16%  Similarity=0.163  Sum_probs=65.8

Q ss_pred             HHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhc-h----hHHHHHHHHHHHHH--hhhh-hhhhhhhcccccCcC--
Q 011756          330 LLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQ-S----NILLTALLSGARMF--SMGT-FIIANIFAPEIYPTS--  398 (478)
Q Consensus       330 ~~~~~~l~dr-~GRr~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~--~~g~-~~~~~~~~~E~~p~~--  398 (478)
                      .+++++++|+ +||++.+..+.++..+....+.... .    .......+......  ..|. -+.......|.++.+  
T Consensus        40 pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~  119 (654)
T TIGR00926        40 PLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL  119 (654)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch
Confidence            4677788885 6999988776655433222222110 0    11111111111111  1121 133455666777643  


Q ss_pred             -hhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc-------chhHHHHHHHHHHHHHHHHHH
Q 011756          399 -MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-------HQTAAILLLEALIVLSVVVIL  450 (478)
Q Consensus       399 -~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~-------~~~~~~~~~~~~~~i~~~~~~  450 (478)
                       .|-....+.+..+++|+.+++.+.+.+.+..       ++...|.+.+++.+++.++..
T Consensus       120 ~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       120 SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence             4788999999999999999998877665332       133445555555555544433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.84  E-value=0.088  Score=53.25  Aligned_cols=129  Identities=26%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             HHHHHHHhhh-----chHHHHHHHHHHHHHHHHHHHhh-c---hhHHHHHHHHHHHHHhhhhhhhhhhhccccc---CcC
Q 011756          331 LTAALLVDRV-----GRKLSMTIMFIFVCIFLLPLVTL-Q---SNILLTALLSGARMFSMGTFIIANIFAPEIY---PTS  398 (478)
Q Consensus       331 ~~~~~l~dr~-----GRr~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~---p~~  398 (478)
                      .+.|.++|-+     .||+-+.++..++.+..+.+... .   +......+++...+.....-...-....|..   |.+
T Consensus        42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~  121 (433)
T PF03092_consen   42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES  121 (433)
T ss_pred             hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence            4677899976     34555566665554433333321 1   1112222222222222222223344555654   555


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  460 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~  460 (478)
                       |+.-++.+..+..+|++++..+.+++.+..+....+.+.+++..+..+..+++.+|.+.++
T Consensus       122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~  182 (433)
T PF03092_consen  122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRP  182 (433)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccc
Confidence             8888999999888999999888888877766555666666676777677777777744333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.70  E-value=1.3  Score=43.58  Aligned_cols=170  Identities=18%  Similarity=0.131  Sum_probs=104.5

Q ss_pred             ccccccHHHHHHhcCCchHHHHHHHHHHHHHH-HHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-------
Q 011756            6 QRLVYTLDEALTFMGFGKFQGLALAYSGLGWF-SEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-------   77 (478)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-------   77 (478)
                      ++++.++.+...+.--++.-.+.+.+.+++.+ +..-|..    ..|.=.+-||+|..|.+.+++....|..+       
T Consensus       191 ~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~i----LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~  266 (403)
T PF03209_consen  191 ERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVI----LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGF  266 (403)
T ss_pred             CCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHH----cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777766654322222222333333332 2233321    22333445899988888777776555433       


Q ss_pred             -----------HHHHHHHHHH---HHHHHhhhchHHHHHHHHHHhhcccCchhh-HHHHHhhccCCCCchhHHHHHHHHH
Q 011756           78 -----------ILGGALVTFV---AGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFW  142 (478)
Q Consensus        78 -----------~~~~~~~~~i---~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~  142 (478)
                                 ...++....+   .-+..+...+.+.|-..=++.|+|.|...+ ..+..-+..++++-|..++.|...+
T Consensus       267 ~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQ  346 (403)
T PF03209_consen  267 LLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQ  346 (403)
T ss_pred             HhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Confidence                       1112212111   123455667888999999999999998754 3456778889999999999999998


Q ss_pred             HHHHHHHHHHHHHHh----------cCcchHHHHHHhhHHHHHHHHH
Q 011756          143 TFGSVSEAALAWIVM----------PILTWRWLLALSAIPAFVLLIF  179 (478)
Q Consensus       143 ~~G~~~~~~~~~~~~----------~~~~WR~~f~i~~i~~~l~~~~  179 (478)
                      .++.-++..++..+.          +..++-.+|.++++.-++.+..
T Consensus       347 A~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  347 AIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            888777777766542          2346888888887655554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.67  E-value=2.2  Score=41.22  Aligned_cols=162  Identities=20%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHH
Q 011756           20 GFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGA   82 (478)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~   82 (478)
                      .+.++|+.-+..=.++..-|..+-    ...-.+-+++|.+..|.+.+....+...++                 .+..+
T Consensus        31 ~f~~Fqr~yl~vY~La~~aDWLQG----pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~c  106 (354)
T PF05631_consen   31 AFRRFQRKYLLVYLLAMAADWLQG----PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFC  106 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            356777765544445555555542    111123357899988877665544432222                 23333


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHhhcccCchhh-HHHH-HhhccCCCCchhH-HHHHHHHHHHH----HHHHHHHHHH
Q 011756           83 LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSW-FMEFVPPSNRGKW-MVVFSTFWTFG----SVSEAALAWI  155 (478)
Q Consensus        83 ~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~-~~~~-~~E~~p~~~Rg~~-~~~~~~~~~~G----~~~~~~~~~~  155 (478)
                      ++.++.+ ++-..+|+..++++|++.|++...... -=+| +.|+-.++.+... ...+.....++    .+.+.+++-.
T Consensus       107 ily~~sc-l~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~  185 (354)
T PF05631_consen  107 ILYSLSC-LTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANV  185 (354)
T ss_pred             HHHHHHH-HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence            3444444 345678999999999999988765433 3355 5787554433332 33333222122    2333344444


Q ss_pred             HhcCcch--HHHHHHhhHHHHHHHHH-HHhcCCC
Q 011756          156 VMPILTW--RWLLALSAIPAFVLLIF-IVFMPES  186 (478)
Q Consensus       156 ~~~~~~W--R~~f~i~~i~~~l~~~~-~~~lpES  186 (478)
                      +.+..+-  ..+|.......++..+. ...-+|.
T Consensus       186 l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  186 LADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            4443433  66777766555544333 3334453

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.20  E-value=0.15  Score=51.55  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             HHHhhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhcCcchHHHHH
Q 011756           90 LLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF-WTFGSVSEAALAWIVMPILTWRWLLA  167 (478)
Q Consensus        90 ~~~~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~WR~~f~  167 (478)
                      +.....+|.|+.+-.-+++|+..+..+ ...+|++...||+.|..+.++.+.. .++|--+|+++++.+...++=|..|.
T Consensus       451 ~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~  530 (618)
T KOG3762|consen  451 LYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR  530 (618)
T ss_pred             HHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence            344567899999999999999999886 4568999999999999999988875 67888889999998888889899998


Q ss_pred             HhhHHHHHHHHHH
Q 011756          168 LSAIPAFVLLIFI  180 (478)
Q Consensus       168 i~~i~~~l~~~~~  180 (478)
                      +.++-+++.++..
T Consensus       531 ~~giAcl~~l~~~  543 (618)
T KOG3762|consen  531 IFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.83  E-value=0.73  Score=42.92  Aligned_cols=126  Identities=14%  Similarity=0.093  Sum_probs=74.8

Q ss_pred             hhhhcCCCcchhhHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCch
Q 011756           53 VKSEWGLSSSEESLITTVVFA---------GMMS--------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG  115 (478)
Q Consensus        53 ~~~~~~l~~~~~~~~~s~~~~---------G~~~--------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~  115 (478)
                      +++.||+|+.+.+.+.|....         |.+.        .+.+..+..+.+= +...-++..=++.-.+.|+.....
T Consensus       291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H-~~l~Ft~lsPy~~m~~lGLsysll  369 (459)
T KOG4686|consen  291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGH-SGLFFTFLSPYTSMTFLGLSYSLL  369 (459)
T ss_pred             HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHh-hhHHhhhccHHHHHHHHhhhHHHH
Confidence            688899999999988876542         2221        1111111111110 011122222244455556554432


Q ss_pred             h-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc---hHHHHHHhhHHHHHHHHH
Q 011756          116 H-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILT---WRWLLALSAIPAFVLLIF  179 (478)
Q Consensus       116 ~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~---WR~~f~i~~i~~~l~~~~  179 (478)
                      . .....++-..|.++-|++.+..+.-.++|..+.+++++.+.++.|   |--.|++......+..+.
T Consensus       370 AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svg  437 (459)
T KOG4686|consen  370 ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVG  437 (459)
T ss_pred             HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence            2 223446778899999999999999999999999999998877543   655565554433333333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.77  E-value=0.7  Score=45.88  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=62.4

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-HHHhhc----hhHHHHHHHHHHHHHhhhhhh----hhhhh
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL-PLVTLQ----SNILLTALLSGARMFSMGTFI----IANIF  390 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~g~~~----~~~~~  390 (478)
                      .+..+.++|-.+.+.|+.||.|-|.....+....++-.. =.....    +.....+..... .....+.+    .+.-.
T Consensus        86 mIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq-~iaa~Aq~Fim~lPski  164 (480)
T KOG2563|consen   86 MIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQ-SIAAAAQPFILGLPSKI  164 (480)
T ss_pred             HHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhH-HHHHHhhhHhhccccHH
Confidence            444566777788899999999999988776654443221 111111    111111111111 11111111    11123


Q ss_pred             cccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhc
Q 011756          391 APEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       391 ~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      ..--||.++|++|..+....+.+|..++..+.+.+..+
T Consensus       165 A~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  165 AAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             HHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            33458999999999999999899888887665544433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.60  E-value=1.9  Score=39.77  Aligned_cols=56  Identities=14%  Similarity=0.307  Sum_probs=37.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-----CcchHHHHHHhhHHHHHHHHHHHhc
Q 011756          128 PSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-----ILTWRWLLALSAIPAFVLLIFIVFM  183 (478)
Q Consensus       128 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-----~~~WR~~f~i~~i~~~l~~~~~~~l  183 (478)
                      +|+|+..+.+-..++++|.++.-.....-.+     ..+||+++.+.++..++.++...++
T Consensus         1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888888888899998875433221101     2469999988887766665555444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=94.57  E-value=3.4  Score=40.06  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH------------------HHHHHHH
Q 011756           23 KFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS------------------ILGGALV   84 (478)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~------------------~~~~~~~   84 (478)
                      +.-|.+.++.++-    ..-....-.=.|.+-.|-|+|+.+.|++.|...+....                  .+...+.
T Consensus       208 ~~aW~vtLfmGlq----S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         208 PLAWQVTLFMGLQ----SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             chhHHHHHHHHhh----HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            3345555555433    22222333347888888999999999988876443222                  1222223


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-Ccc
Q 011756           85 TFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVP-PSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-ILT  161 (478)
Q Consensus        85 ~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~  161 (478)
                      +.++-....+.|.-..+.- -++.|+|.|+. +...+.+...++ +++-++.+++.|..-++=...+|.+.+.+-+ ..+
T Consensus       284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs  362 (395)
T COG2807         284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS  362 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence            3333222234444322222 38899998875 444455544433 4444566666554433333456667666644 357


Q ss_pred             hHHHHHHhhHHHHHHHHHHH
Q 011756          162 WRWLLALSAIPAFVLLIFIV  181 (478)
Q Consensus       162 WR~~f~i~~i~~~l~~~~~~  181 (478)
                      |+..........+++.+.-+
T Consensus       363 w~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         363 WSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHh
Confidence            99998877776666655433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.40  E-value=0.18  Score=49.85  Aligned_cols=81  Identities=17%  Similarity=0.132  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhhcccCch-hhHHHHHhhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHH
Q 011756           99 ISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAF  174 (478)
Q Consensus        99 ~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~  174 (478)
                      ..++++-.+.++|.|+. +...+...|-.++++   |.+...++..+.++|.+++..+..++-++.||.+.|.+.++..+
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~  113 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML  113 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence            57889999999999987 555677787777663   44455667778888988888877777788999999999877665


Q ss_pred             HHHHH
Q 011756          175 VLLIF  179 (478)
Q Consensus       175 l~~~~  179 (478)
                      +.++.
T Consensus       114 ~~~~~  118 (372)
T PF00854_consen  114 LALIV  118 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.32  E-value=1.5  Score=43.34  Aligned_cols=101  Identities=18%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             hcCCCcchhhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCchhh
Q 011756           56 EWGLSSSEESLITTVVFAGMMS------------------ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV  117 (478)
Q Consensus        56 ~~~l~~~~~~~~~s~~~~G~~~------------------~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~~~  117 (478)
                      ++.-..++.-+.+-.+.+|..+                  +....++..+...+--+.+|++..++.=+..|+-.|..++
T Consensus       275 ~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  275 SFFSPRDQYRWYQLLYQLGVFISRSSLPFFRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhhhcceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            3433456677888888888666                  1111112222222333568888888999999987777776


Q ss_pred             H-HHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011756          118 F-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV  156 (478)
Q Consensus       118 ~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  156 (478)
                      . ...+.|-.|+++|-..++....+-+.|.+++++++..+
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4 34467888999999999999999999999999988764

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.26  E-value=1.9  Score=36.69  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=59.6

Q ss_pred             hhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH-HHHHHhhhhhhhhhhhcccccCcChhHHH
Q 011756          325 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS-GARMFSMGTFIIANIFAPEIYPTSMRSTG  403 (478)
Q Consensus       325 ~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~E~~p~~~R~~~  403 (478)
                      ...+..++.+.+.+++|.|+.++++.+.-.+........  .+....... ..++...-.|.....+..|..+.+.|++-
T Consensus        49 ~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~  126 (156)
T PF05978_consen   49 SFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP--NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRN  126 (156)
T ss_pred             HHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhH
Confidence            345566788899999999999988876655544333222  222111111 11121222344455677788888889998


Q ss_pred             HHHHHHHHhHhHhHHHHHHH
Q 011756          404 AGVAYAVGRIGGMVCPLVAV  423 (478)
Q Consensus       404 ~g~~~~~~~lg~~~~p~~~~  423 (478)
                      .|+...+.+.+.+++..+..
T Consensus       127 ~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  127 TGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888887777666665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.13  E-value=1.4  Score=37.48  Aligned_cols=63  Identities=14%  Similarity=0.209  Sum_probs=50.9

Q ss_pred             hhchHHHHHHHHHHhhcccCchhhH-HHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011756           94 FSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV  156 (478)
Q Consensus        94 ~a~~~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  156 (478)
                      +-++.+.++.+-.+.|+|.+...++ ..|+.|.++++.|++..+++-.....+.+.|.++...+
T Consensus        85 ~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   85 FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577889999999999998887654 56899999999999999887777777777777666554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.78  E-value=1.8  Score=40.19  Aligned_cols=104  Identities=25%  Similarity=0.256  Sum_probs=58.6

Q ss_pred             HhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHHHhhhhhhhhhhhcccccCc-Ch
Q 011756          323 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFSMGTFIIANIFAPEIYPT-SM  399 (478)
Q Consensus       323 ~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~-~~  399 (478)
                      .+....+.+..|.+.||.|||+.+..+........+.......  ...................+....+.+|.+|. +.
T Consensus        49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  128 (338)
T COG0477          49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE  128 (338)
T ss_pred             HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence            3444555688999999999997766655321111111112111  11111111111122223345567888899988 67


Q ss_pred             hHHHHHHHHH-HHhHhHhHHHHHHHHHh
Q 011756          400 RSTGAGVAYA-VGRIGGMVCPLVAVGLV  426 (478)
Q Consensus       400 R~~~~g~~~~-~~~lg~~~~p~~~~~l~  426 (478)
                      |+...+.... ...++..++|.+...+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477         129 RGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887 46667777775554443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.36  E-value=19  Score=36.97  Aligned_cols=42  Identities=14%  Similarity=-0.056  Sum_probs=37.1

Q ss_pred             hhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhh
Q 011756          386 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  427 (478)
Q Consensus       386 ~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~  427 (478)
                      ..|.+.+|..+.+...+-.++....+++|.+++..+...+-.
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999998877766554

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=90.63  E-value=8.5  Score=41.12  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             HHHHHHHhhcccCch-hhHHHHHhhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhc-------CcchHHHHHHh
Q 011756          101 LLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFSTFWTFGSVSEAALAWIVMP-------ILTWRWLLALS  169 (478)
Q Consensus       101 l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~WR~~f~i~  169 (478)
                      .+++=.+..+|.|+. +...+...|-.++++   |-....++..+.++|.++++.+...+..       ..+|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            455556666677765 344455666666544   4445556666667777777766665542       23699999888


Q ss_pred             hHHHHHHHHH
Q 011756          170 AIPAFVLLIF  179 (478)
Q Consensus       170 ~i~~~l~~~~  179 (478)
                      ++..++.++.
T Consensus       168 ~i~m~ia~lv  177 (654)
T TIGR00926       168 AILMILALIV  177 (654)
T ss_pred             HHHHHHHHHH
Confidence            7666555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=89.99  E-value=3.1  Score=30.54  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=25.8

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHH
Q 011756          318 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMF  350 (478)
Q Consensus       318 ~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~  350 (478)
                      ...+..+..+++..+.|.++||.+|++......
T Consensus        40 l~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen   40 LSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            344555678889999999999999999766543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=89.37  E-value=4.1  Score=41.38  Aligned_cols=133  Identities=18%  Similarity=0.206  Sum_probs=70.9

Q ss_pred             HHHhhhhhHHHHHHHHHhhhc--hHHHHHHHHHHHHHH-HHH--HHhhchhHHHHHHHH--HHHHHhhhhhhhhhhhccc
Q 011756          321 ITSFAELPGLLTAALLVDRVG--RKLSMTIMFIFVCIF-LLP--LVTLQSNILLTALLS--GARMFSMGTFIIANIFAPE  393 (478)
Q Consensus       321 ~~~~~~~~g~~~~~~l~dr~G--Rr~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~E  393 (478)
                      ...++...+++..++-..|.+  ||+++. +.+++.+. ++.  +....+.. ...+++  ...++..+.....-.|.+.
T Consensus        79 a~slg~~i~~liF~~Ws~k~~~~k~Pli~-s~ii~~~g~llY~~l~~~~~~~-~y~mL~~R~l~Gvg~~n~a~lR~Y~a~  156 (488)
T KOG2325|consen   79 ASSLGHAIFSLIFGIWSNKTGSVKKPLIV-SFLIAIIGNLLYLALAYVPNGV-KYLMLVARILTGVGVGNFAVLRAYIAD  156 (488)
T ss_pred             HHHHHHHhcchhhcccccccCCcccCHHH-HHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHcCcCcccHHHHHHHHHh
Confidence            345667778888888888888  555544 44433332 222  12211111 121221  1112222333455678888


Q ss_pred             ccCcChhHHHHHHHHHHHhHhHhHHHHHH---HHHhhcc---------c-hhHHHHHHHHHHHHHHHHHHhcccc
Q 011756          394 IYPTSMRSTGAGVAYAVGRIGGMVCPLVA---VGLVTSC---------H-QTAAILLLEALIVLSVVVILLIPFE  455 (478)
Q Consensus       394 ~~p~~~R~~~~g~~~~~~~lg~~~~p~~~---~~l~~~~---------~-~~~~~~~~~~~~~i~~~~~~~~~pe  455 (478)
                      .--.+.|.++++..+...-+|.++||.+-   .++.+..         + .+.+-++.+...++..++..++..|
T Consensus       157 ~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  157 ASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             ccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            77778888887776664445555555332   2232111         1 2356667777777777777776655

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=88.37  E-value=32  Score=35.15  Aligned_cols=38  Identities=3%  Similarity=-0.028  Sum_probs=33.4

Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011756          120 SWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM  157 (478)
Q Consensus       120 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~  157 (478)
                      .+.+|.+++++=.|..+++..+.++|.++++.+...+.
T Consensus       152 ~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       152 GFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999998776654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=85.71  E-value=44  Score=34.01  Aligned_cols=37  Identities=5%  Similarity=-0.018  Sum_probs=32.1

Q ss_pred             HhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011756          122 FMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP  158 (478)
Q Consensus       122 ~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~  158 (478)
                      .+|.+..+|-+|..+.++.+.+++.++++.+...+..
T Consensus       173 aNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         173 ANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4789888999999999999999999998888777644

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=85.55  E-value=41  Score=33.56  Aligned_cols=123  Identities=15%  Similarity=0.102  Sum_probs=60.5

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHH
Q 011756          331 LTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAV  410 (478)
Q Consensus       331 ~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~  410 (478)
                      +....+.|.+|.|++++.+.....+.-..+.+..+.....+.-+..+. ..+.-...+.|.--..|++.--++.+.+.+.
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~-~~a~evay~sYiys~v~~~~yq~vts~~raa  137 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGL-ATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA  137 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH-HHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence            445578999999999887665443333223332322222222111111 1122233456666667887777777777766


Q ss_pred             HhHhHhHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHHHhccc
Q 011756          411 GRIGGMVCPLVAVGLVTSCHQ--TAAILLLEALIVLSVVVILLIPF  454 (478)
Q Consensus       411 ~~lg~~~~p~~~~~l~~~~~~--~~~~~~~~~~~~i~~~~~~~~~p  454 (478)
                      .-+|-.++..+.-.++...+.  .....+-.+...++.++.+++++
T Consensus       138 ~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  138 TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666555555443323322221  11222222333455555566543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=83.04  E-value=60  Score=33.40  Aligned_cols=39  Identities=10%  Similarity=0.102  Sum_probs=33.3

Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011756          120 SWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP  158 (478)
Q Consensus       120 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~  158 (478)
                      .+.+|+++.+|=.|..+.+..+.++|.++++.+...+..
T Consensus       167 ~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  167 GFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999999998877766544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=82.19  E-value=24  Score=35.57  Aligned_cols=41  Identities=22%  Similarity=0.152  Sum_probs=32.4

Q ss_pred             hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011756          116 HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV  156 (478)
Q Consensus       116 ~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~  156 (478)
                      ....-++.|..|+++||..+++-...+++--++...++...
T Consensus       375 L~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  375 LAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445688999999999999999998888888766665543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=81.81  E-value=69  Score=33.28  Aligned_cols=71  Identities=13%  Similarity=0.094  Sum_probs=38.4

Q ss_pred             HHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH-HhcCcc-hHHHHHHhhHHHH
Q 011756          103 ILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWI-VMPILT-WRWLLALSAIPAF  174 (478)
Q Consensus       103 ~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~-WR~~f~i~~i~~~  174 (478)
                      ..-++.|+-.|+.. ....+..+.. .++-|+..+-......+|.++|+++..+ +.+..| ++..+.++.+-.+
T Consensus       115 ~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~  188 (521)
T PRK03612        115 VLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLL  188 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            33445566566653 3333332221 2223555666667777888888887654 456666 5565555544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	478
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 162 WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKI 206
           WR++ A   IPA + L+ +  +PESPR+L ++G+   A  IL KI
Sbjct: 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	478
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	4e-08

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 61/397 (15%), Positives = 115/397 (28%), Gaps = 82/397 (20%)

Query: 77  SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-----VFFSWFMEFVPPSNR 131
            ++  A V    G +   + +   + +L  L G   G G          W+        R
Sbjct: 98  GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKER 153

Query: 132 GKWMVVFSTFWTFGSVSEAALAWIVMPILT-WRWLLALSAIPAFVLLIFI-VFMPESPRY 189
           G  + V++     G      L  + M     W   L + A  A ++ +F    M ++P+ 
Sbjct: 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ- 212

Query: 190 LCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV 249
                                   LP      +   D   E +  E T            
Sbjct: 213 ---------------------SCGLPPIEEYKNDYPDDYNEKAEQELTA----------- 240

Query: 250 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYY--------GIVLLASELSGSQSKCS 301
                     +   +       LW +   N FVY             L      +  K S
Sbjct: 241 ---KQIFMQYVLPNKL------LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS 291

Query: 302 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCI-----F 356
            +  L E               +A +PG L    + D+V R         F+ +      
Sbjct: 292 WAYFLYE---------------YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336

Query: 357 LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGM 416
           +  +    +  +    +        G  ++  + A E+ P     T AG     G +GG 
Sbjct: 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396

Query: 417 VC-PLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI 452
           V    +    V         +++    +L+V++++++
Sbjct: 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	478
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.83
2xut_A	524	Proton/peptide symporter family protein; transport	99.81
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.26
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.15
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.14
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.06
2xut_A	524	Proton/peptide symporter family protein; transport	98.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.63
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.22

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=3.7e-43  Score=359.57  Aligned_cols=410  Identities=20%  Similarity=0.246  Sum_probs=287.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCC--------cchhhHHHHHHHHHHHH----------------
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLS--------SSEESLITTVVFAGMMS----------------   77 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~s~~~~G~~~----------------   77 (478)
                      .+|.+.+.+++++|.++++||...++.+.|.++++++.+        +.+.|++.|++++|.++                
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            377888888899999999999999999999998887432        34578888888887655                


Q ss_pred             -HHHHHHHHHHHHHHHh------------------hhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHH
Q 011756           78 -ILGGALVTFVAGLLSA------------------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV  137 (478)
Q Consensus        78 -~~~~~~~~~i~~~~~~------------------~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~  137 (478)
                       ++.+.+++.+++++++                  +++|+++++++|+++|+|.|+.. ....|++|++|+++||+..+.
T Consensus        87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~  166 (491)
T 4gc0_A           87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence             5677788888888888                  48899999999999999999874 567889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHhhHHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHH
Q 011756          138 FSTFWTFGSVSEAALAWIVMP--------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQF  209 (478)
Q Consensus       138 ~~~~~~~G~~~~~~~~~~~~~--------~~~WR~~f~i~~i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~  209 (478)
                      .+.++..|.++++.++.....        .++||+++.+..+++++.++.++++||||||+..|+|.||+++.+++.+..
T Consensus       167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            999999999999888776532        357999999999999999999999999999999999999999999988754


Q ss_pred             cCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011756          210 NQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLL  289 (478)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (478)
                      +..+.              +.   .+.++..    .+.   ++.. .....++.+  +..+......+.+...++....+
T Consensus       247 ~~~~~--------------~~---~~~~~~~----~~~---~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  299 (491)
T 4gc0_A          247 TLATQ--------------AV---QEIKHSL----DHG---RKTG-GRLLMFGVG--VIVIGVMLSIFQQFVGINVVLYY  299 (491)
T ss_dssp             HHHHH--------------HH---HHHHHHH----HHH---HHHT-THHHHSCCT--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             chhHH--------------HH---HHHHHHH----Hhh---hhhh-hHHHHhccc--HHHHHHHHHHHHHHhhhhHHHhc
Confidence            32100              00   0000000    000   0000 111111111  11122222222222222333333


Q ss_pred             HHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--h-c-h
Q 011756          290 ASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--L-Q-S  365 (478)
Q Consensus       290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~--~-~-~  365 (478)
                      .+.+....           ...............+..+++.+++++++||+|||+.+..+.....+.++.+..  . . .
T Consensus       300 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~  368 (491)
T 4gc0_A          300 APEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP  368 (491)
T ss_dssp             HHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence            33332111           111122333445666778899999999999999999988776655544433321  1 1 1


Q ss_pred             hHHH-HHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc------chhHHHHHH
Q 011756          366 NILL-TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC------HQTAAILLL  438 (478)
Q Consensus       366 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~------~~~~~~~~~  438 (478)
                      .... ........++..+..++.|.+.+|+||+++|+++.|+++.++++++++++.+.+.+.+..      +....++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~  448 (491)
T 4gc0_A          369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  448 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            1221 122222233344555678999999999999999999999999999999998877654321      223467888


Q ss_pred             HHHHHHHHHHHHhccccccCcccchhhcccc
Q 011756          439 EALIVLSVVVILLIPFETKGKELVNTIDGVS  469 (478)
Q Consensus       439 ~~~~~i~~~~~~~~~pet~g~~l~~~~~~~~  469 (478)
                      +++++++.++.+++.||||||++||.++.-|
T Consensus       449 ~~~~~~~~i~~~~~~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          449 GCMGVLAALFMWKFVPETKGKTLEELEALWE  479 (491)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred             HHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence            9999999999999999999999998655433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=7.7e-28  Score=242.84  Aligned_cols=380  Identities=13%  Similarity=0.168  Sum_probs=258.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .++++..+..+.++.+.++++....+...|.+.+|+ +++.+.|++.+.+.++..+                 ++.+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            466778888888999999999999999999999999 9999999999998776554                 5667777


Q ss_pred             HHHHHHHHhh----hchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011756           85 TFVAGLLSAF----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI  159 (478)
Q Consensus        85 ~~i~~~~~~~----a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~  159 (478)
                      ..++.++.++    ++|++.++++|++.|++.|.. +...+++.|++|+++|++..++.+.+..+|.++++.++..+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889    999999999999999998875 45678899999999999999999999999999999999887777


Q ss_pred             cc-hHHHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcc
Q 011756          160 LT-WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET  237 (478)
Q Consensus       160 ~~-WR~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (478)
                      .| ||+.|++.+++.++. ++..+++||+|+....+.++++                     .++.    ++.   .+++
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~----~~~---~~~~  233 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------------------KNDY----PDD---YNEK  233 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------------------CCC---------------
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------------------cccc----ccc---chhh
Confidence            88 999999998877665 4456778999875322111000                     0000    000   0000


Q ss_pred             cccccccccccccccccch--hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhh
Q 011756          238 PLLSSARKRTTVRKSGFSS--FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASV  315 (478)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  315 (478)
                      +      ++    +...++  .+..++++   ..+...+..+.....+++...+.|.+.....          +.+....
T Consensus       234 ~------~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~  290 (451)
T 1pw4_A          234 A------EQ----ELTAKQIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKS  290 (451)
T ss_dssp             ---------------CCTHHHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHH
T ss_pred             h------hc----ccccccchHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHH
Confidence            0      00    000001  12223222   2222233333344445555555554432210          1111222


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhh--chHHHHHHHHHHHH-HHHHHHHhhc--hhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011756          316 YINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIF  390 (478)
Q Consensus       316 ~~~~~~~~~~~~~g~~~~~~l~dr~--GRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~  390 (478)
                      ........++.+++.++.+++.||+  |||+.+..+..+.. +..+.+....  +.+......+...+...+.++..+.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  370 (451)
T 1pw4_A          291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH  370 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            2233455677888999999999999  99998776655444 3333333221  22222222333333334455566789


Q ss_pred             cccccCcChhHHHHHHHHHHHhH-hHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcc
Q 011756          391 APEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  453 (478)
Q Consensus       391 ~~E~~p~~~R~~~~g~~~~~~~l-g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  453 (478)
                      ..|.+|++.|+++.|+.+.+.++ |+.++|.+.+.+.+..+....+.+.+++.+++.++.++..
T Consensus       371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 9999999999888876666677777777777766665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.96  E-value=1e-25  Score=226.47  Aligned_cols=353  Identities=14%  Similarity=0.102  Sum_probs=234.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .+.++..+..+++..+..+++....+...|.+++++|+++.+.|++.+.+.++..+                 ++.+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            34455566667778889999999999999999999999999999999998877554                 5667777


Q ss_pred             HHHHHHHH---hhhchHHHHHHHHHHhhcccCchh-hHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-cC
Q 011756           85 TFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM-PI  159 (478)
Q Consensus        85 ~~i~~~~~---~~a~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~  159 (478)
                      ..++.++.   ++++|++.++++|++.|+|.|... ...+++.|++|+++|++..++.+.+..+|.++++.++..+. +.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            77888777   889999999999999999998764 56788999999999999999999999999999999988776 54


Q ss_pred             cc-------------------------hHHHHHHhhHHHHHHHHHHHh--cCCCchhhhhcCChhHHHHHHHHHHHHcCC
Q 011756          160 LT-------------------------WRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAHNILDKIAQFNQT  212 (478)
Q Consensus       160 ~~-------------------------WR~~f~i~~i~~~l~~~~~~~--lpESP~~l~~~~~~~~a~~~l~~~~~~~~~  212 (478)
                      .+                         ||+.|++.++...+..+..++  .||+++..                      
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------------------  238 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----------------------  238 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC----------------------
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc----------------------
Confidence            44                         999998877666555443333  45554310                      


Q ss_pred             CCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011756          213 SLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE  292 (478)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (478)
                      +       +      ++     ++++              ...+.+++++++......+.   .+.....+++...+.+.
T Consensus       239 ~-------~------~~-----~~~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  283 (438)
T 3o7q_A          239 H-------S------DA-----KQGS--------------FSASLSRLARIRHWRWAVLA---QFCYVGAQTACWSYLIR  283 (438)
T ss_dssp             C-------C------CS-----STTS--------------HHHHHHHHTTCSHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             c-------c------cc-----cccc--------------hhhhHHHHHhChHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            0       0      00     0000              00122333433322222221   22222223333333333


Q ss_pred             h-hCCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011756          293 L-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTA  371 (478)
Q Consensus       293 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (478)
                      + ....          .+.+............++.+++.++.++++||+|||+.+..+..+..+..+......+......
T Consensus       284 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (438)
T 3o7q_A          284 YAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA  353 (438)
T ss_dssp             HHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             Hhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            3 2111          0111111222334455778889999999999999999988777666555444443333322222


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHH
Q 011756          372 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVL  444 (478)
Q Consensus       372 ~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i  444 (478)
                       .....++....++..+.+..|.+|++ |+++.++.. .+++++.++|.+.+.+.+..+ ....+.+.+++.++
T Consensus       354 -~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          354 -LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             -HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence             22222333445667788889999977 999999877 788999999999998887765 44455544444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.90  E-value=3.6e-22  Score=203.85  Aligned_cols=393  Identities=11%  Similarity=-0.001  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHHHH-HhHHhhhhh-----cCCCcchhhHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Q 011756           35 GWFSEAMEVMILS-FVGPAVKSE-----WGLSSSEESLITTVVFAGMMS------------------ILGGALVTFVAGL   90 (478)
Q Consensus        35 ~~~~~~~~~~~~~-~~~~~~~~~-----~~l~~~~~~~~~s~~~~G~~~------------------~~~~~~~~~i~~~   90 (478)
                      ..+.+.+...... +..+.++++     +|+++.+.+++.+.+.++..+                  +..+.++..++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            3444444444433 333334444     999999999999988776544                  4556677778888


Q ss_pred             HHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Q 011756           91 LSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLA  167 (478)
Q Consensus        91 ~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~  167 (478)
                      +.++++|++.++++|++.|+|.|.. +...+++.|++|+++  |++..+.++.+..+|..+++.++..+.+..|||+.|+
T Consensus       101 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  180 (491)
T 4aps_A          101 VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS  180 (491)
T ss_dssp             HHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            8899999999999999999998876 456778999999999  7778888999999999999999998888899999999


Q ss_pred             HhhHHHHHHHHHHHhc-CC----CchhhhhcCChhHHHHHHHH--------------HHHHcCCCCCCCCCCCCCCCCcc
Q 011756          168 LSAIPAFVLLIFIVFM-PE----SPRYLCTKGRITDAHNILDK--------------IAQFNQTSLPSGNLTSDGTNDLD  228 (478)
Q Consensus       168 i~~i~~~l~~~~~~~l-pE----SP~~l~~~~~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~  228 (478)
                      +.++..++..+...+. |+    .++-...+.+.++.++..++              ....++.+             .+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-------------~~  247 (491)
T 4aps_A          181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS-------------LP  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC-------------TT
T ss_pred             HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc-------------cc
Confidence            9876665554433222 21    11111111223333333332              11111100             00


Q ss_pred             cccCCCCc-ccccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhCCCCCcccc
Q 011756          229 EEFSTSEE-TPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYY----GIVLLASELSGSQSKCSSS  303 (478)
Q Consensus       229 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~  303 (478)
                      +....... .............++.   ......+++.. .....+...+.....+.    ....+....... +     
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----  317 (491)
T 4aps_A          248 AYINLLTIVAIAIPVFYFAWMISSV---KVTSTEHLRVV-SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS-S-----  317 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---------------CT-THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC-S-----
T ss_pred             cchhhhhHHHHHHHHHHHHHHhhcc---cccHHHHHHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc-C-----
Confidence            00000000 0000000000000000   00000001111 11111111111111111    111111111100 0     


Q ss_pred             cccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchHHHHH-----HHHHHHHHHHHHHHhhc---------hhHHH
Q 011756          304 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-----IMFIFVCIFLLPLVTLQ---------SNILL  369 (478)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~  369 (478)
                            ......  ......+..+++..+.+++.||+|||+...     .+..+.++....+....         +....
T Consensus       318 ------~~~~~~--~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4aps_A          318 ------WFPVSW--FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL  389 (491)
T ss_dssp             ------SSCSGG--GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred             ------ccCHHH--HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence                  000110  112333445566778889999999986433     33333333322222110         11222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 011756          370 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  449 (478)
Q Consensus       370 ~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  449 (478)
                      ........+......+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.+.+ .+....+..++++++++.++.
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence            2222222222222345678899999999999999999999999999999998665543 344566777777778877777


Q ss_pred             HhccccccCc
Q 011756          450 LLIPFETKGK  459 (478)
Q Consensus       450 ~~~~pet~g~  459 (478)
                      +++.++++++
T Consensus       469 ~~~~~~~~~~  478 (491)
T 4aps_A          469 VFLSKRIQGL  478 (491)
T ss_dssp             HHC-------
T ss_pred             HHHHHHHHHH
Confidence            7777777655

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=1.5e-22  Score=199.34  Aligned_cols=328  Identities=13%  Similarity=0.067  Sum_probs=208.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 011756           30 AYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLS   92 (478)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~   92 (478)
                      +...++.+.+.++........|.+.+++|.++.+.+++.+...++..+                 +..+.++..++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            345567788889999999999999999999999999999998877655                 566777778888888


Q ss_pred             hhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhH
Q 011756           93 AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI  171 (478)
Q Consensus        93 ~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i  171 (478)
                      ++++|++.+++.|++.|++.+.. +...+++.|+.|+++|++..+..+....+|..+++.++..+.+..+||+.|.+.++
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV  162 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence            89999999999999999998875 45567899999999999999999999999999999999988888899999999888


Q ss_pred             HHHHHHH-HHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccccccc
Q 011756          172 PAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVR  250 (478)
Q Consensus       172 ~~~l~~~-~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (478)
                      ..++..+ ..+++||+|+...++                                  ++     ..              
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~-----~~--------------  189 (375)
T 2gfp_A          163 LCAGVTFSMARWMPETRPVDAPR----------------------------------TR-----LL--------------  189 (375)
T ss_dssp             HHHHHHCCCCCSSCCCSTTTCCC----------------------------------CC-----TT--------------
T ss_pred             HHHHHHHHHHHHCcccCCCCccc----------------------------------cc-----HH--------------
Confidence            7766654 455678876521000                                  00     00              


Q ss_pred             ccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhHH
Q 011756          251 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGL  330 (478)
Q Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  330 (478)
                          +++++.++++   +........+.....+++...+.|.+...          ..+.+....-.......++.+++.
T Consensus       190 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T 2gfp_A          190 ----TSYKTLFGNS---GFNCYLLMLIGGLAGIAAFEACSGVLMGA----------VLGLSSMTVSILFILPIPAAFFGA  252 (375)
T ss_dssp             ----TCSTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCSCSSHH----------HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ----HHHHHHhcCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHHH
Confidence                0011111111   11122222222233333333332221100          000111111112233345566677


Q ss_pred             HHHHHHHhhhchHHHHHHHH-HHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHH
Q 011756          331 LTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVT--LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVA  407 (478)
Q Consensus       331 ~~~~~l~dr~GRr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~  407 (478)
                      ++.+++.||.|||....... ...+...+....  ..+.+..........+.....++..+.+..|.+| +.|+++.|+.
T Consensus       253 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~  331 (375)
T 2gfp_A          253 WFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALV  331 (375)
T ss_dssp             HHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHH
Confidence            77777778877733222211 111111111111  1112212122222222222345566788899999 8999999999


Q ss_pred             HHHHhHhHhHHHHHHHHHhhc
Q 011756          408 YAVGRIGGMVCPLVAVGLVTS  428 (478)
Q Consensus       408 ~~~~~lg~~~~p~~~~~l~~~  428 (478)
                      +..+++|+.++|.+.+.+.+.
T Consensus       332 ~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          332 GGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             HHHHHHHHHCCSTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999887766553

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.83  E-value=1.8e-19  Score=180.07  Aligned_cols=351  Identities=12%  Similarity=0.066  Sum_probs=188.4

Q ss_pred             HHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHH---HHHhhhchHH-HHHHHHHHh
Q 011756           50 GPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAG---LLSAFSPNYI-SLLILRGLA  108 (478)
Q Consensus        50 ~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~---~~~~~a~~~~-~l~~~R~l~  108 (478)
                      .+.+++++|+++.+.|++.+.+.++..+                 ++.+..++.++.   ...++++... .+..+|++.
T Consensus        31 ~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (417)
T 2cfq_A           31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG  110 (417)
T ss_dssp             HHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3336778999999999999998776554                 222332222211   1112222221 245667777


Q ss_pred             hcccCchh-hHHHHHhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHHHHHHhcCC
Q 011756          109 GAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPE  185 (478)
Q Consensus       109 Gig~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~i~~~l~~~~~~~lpE  185 (478)
                      |++.|... .......++.++  ++||...+.......+|..+++.++..+.+ .+||+.|++.+++.++..+..++.||
T Consensus       111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~  189 (417)
T 2cfq_A          111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             GSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence            77665432 112222233332  356766777766777888888888877654 58999999888776555444444444


Q ss_pred             CchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcccccccccccccccccccchhhcccC-cc
Q 011756          186 SPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PR  264 (478)
Q Consensus       186 SP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~  264 (478)
                      +|+.   +.+.+|                        .    ++  ++.++               ...++.+++++ ++
T Consensus       190 ~~~~---~~~~~~------------------------~----~~--~~~~~---------------~~~~~~~~~~~~~~  221 (417)
T 2cfq_A          190 DAPS---SATVAN------------------------A----VG--ANHSA---------------FSLKLALELFRQPK  221 (417)
T ss_dssp             CCSC---SSCSSS------------------------S----SS--SCCCC---------------CCHHHHHHHTTCHH
T ss_pred             cccc---cccccc------------------------c----cc--ccccc---------------ccHHHHHHHhcCCc
Confidence            3320   000000                        0    00  00000               00011222333 33


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCcccccccccCccchhhHHHHHHHHhhhhhHHHHHHHHHhhhchH
Q 011756          265 FFKTTILLWVLYFGNSFVYYGIVLLASELS-GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK  343 (478)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~GRr  343 (478)
                      .+...    ...+.....++....+.|.+. ...+        .........-....+..++.+++.++.++++||+|||
T Consensus       222 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  289 (417)
T 2cfq_A          222 LWFLS----LYVIGVSCTYDVFDQQFANFFTSFFA--------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK  289 (417)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHTSS--------SHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH
Confidence            32211    111111222222211222211 0000        0000001111122333456778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHH-HHHHhHhHhHHHHHH
Q 011756          344 LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVA-YAVGRIGGMVCPLVA  422 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~-~~~~~lg~~~~p~~~  422 (478)
                      +.+..+..+.++..+......+.+..........+.........+.+.+|.+|++.|+++.|+. +..+++|+.++|.+.
T Consensus       290 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~  369 (417)
T 2cfq_A          290 NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence            9887766555544333333222222221111111111222334578999999999999999996 677789999999998


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCccc
Q 011756          423 VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  461 (478)
Q Consensus       423 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l  461 (478)
                      +.+.+..+....+.+.+++.+++.++.++..||++..++
T Consensus       370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            877766555556777777778887777777788776554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.81  E-value=1e-18  Score=179.66  Aligned_cols=147  Identities=15%  Similarity=0.073  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHh-HHhhhhhcC------CCcchhhHHHHHHHHHHHH------------------HHHHHHHHHHHH
Q 011756           35 GWFSEAMEVMILSFV-GPAVKSEWG------LSSSEESLITTVVFAGMMS------------------ILGGALVTFVAG   89 (478)
Q Consensus        35 ~~~~~~~~~~~~~~~-~~~~~~~~~------l~~~~~~~~~s~~~~G~~~------------------~~~~~~~~~i~~   89 (478)
                      +.+++.+........ .+.+++++|      +++.+.+++.+.+.++..+                  +..+.++..++.
T Consensus        20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~   99 (524)
T 2xut_A           20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH   99 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            334444444333333 344677888      9999999999988776544                  455666777777


Q ss_pred             HHHhhhc-hHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHH---HHHHHHHHHHHHHHHHHHHhcCcchHH
Q 011756           90 LLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV---FSTFWTFGSVSEAALAWIVMPILTWRW  164 (478)
Q Consensus        90 ~~~~~a~-~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~WR~  164 (478)
                      ++.++++ |++.+++.|++.|++.|.. +...+++.|++|+++||+..+.   .+....+|..+++.++..+.+..|||+
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  179 (524)
T 2xut_A          100 AFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAV  179 (524)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            8888888 9999999999999998876 4567789999999999887766   888899999999999888878889999


Q ss_pred             HHHHhhHHHHHHHHHHH
Q 011756          165 LLALSAIPAFVLLIFIV  181 (478)
Q Consensus       165 ~f~i~~i~~~l~~~~~~  181 (478)
                      .|++.++..++..+...
T Consensus       180 ~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          180 AFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998877665544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.26  E-value=1.7e-10  Score=115.49  Aligned_cols=140  Identities=14%  Similarity=0.046  Sum_probs=100.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hchhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSNILLTALLSGARMFSMGTFIIANIFAPEI  394 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~  394 (478)
                      .....++..++.+..|+++||+|||+.+..+..+.++..+....    ..+.+...+..+...+......+....+.+|.
T Consensus        68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~  147 (451)
T 1pw4_A           68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  147 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            34555677888999999999999999988887766655544444    33333223222333333333456678899999


Q ss_pred             cCcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHHhccccccC
Q 011756          395 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKG  458 (478)
Q Consensus       395 ~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~pet~g  458 (478)
                      +|.+.|+++.|+.+....+|..++|.+.+.+.+..+ +...+.+.+++.++..++.++..||++.
T Consensus       148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            999999999999999999999999999887766655 5566777777776666666666677554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.15  E-value=1.7e-09  Score=109.78  Aligned_cols=137  Identities=11%  Similarity=0.028  Sum_probs=95.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          319 VFITSFAELPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr-~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      .....++..++.+..|+++|| +|||+.+..+..+..+..+......+.+...+..+...+......+....+.+|.+|.
T Consensus        60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  139 (491)
T 4aps_A           60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE  139 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence            345567778899999999999 8999999888776665555444433333333222333333333456678899999999


Q ss_pred             Ch--hHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcccc
Q 011756          398 SM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  455 (478)
Q Consensus       398 ~~--R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pe  455 (478)
                      +.  |+++.++.+....+|..++|.+.+.+.+..++...+.+.++..+++.+..++..|+
T Consensus       140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4aps_A          140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK  199 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            88  77888888899999999999998888776666666766666666665555544343

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.14  E-value=2.8e-09  Score=106.24  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=78.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---HhhchhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      .....++..++.+..|+++||+|||+.+..+..+.++..+..   ....+.+...+..+..........+....+.+|.+
T Consensus        67 ~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  146 (438)
T 3o7q_A           67 QSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG  146 (438)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc
Confidence            345556778889999999999999999888776665544443   33233333322223333333344556788999999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHh
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  426 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~  426 (478)
                      |.+.|+++.|+.+....+|..++|.+.+.+.
T Consensus       147 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887776

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.06  E-value=1.5e-09  Score=105.94  Aligned_cols=141  Identities=18%  Similarity=0.062  Sum_probs=97.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcC
Q 011756          319 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  398 (478)
Q Consensus       319 ~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~  398 (478)
                      .....++..++.+..|+++||+|||+.+..+....++..+......+.+......+..........+....+.+|.+|++
T Consensus        41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  120 (375)
T 2gfp_A           41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT  120 (375)
T ss_dssp             HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence            34555677888999999999999999888777665554444433333322222222222222334456688899999999


Q ss_pred             hhHHHHHHHHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCc
Q 011756          399 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  459 (478)
Q Consensus       399 ~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~  459 (478)
                      .|+++.++.+....+|..++|.+.+.+.+..++...+.+.+++.++..+...+..||++.+
T Consensus       121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            9999999999999999999999888776654555566666666666655556667887654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.97  E-value=1.8e-08  Score=103.05  Aligned_cols=135  Identities=16%  Similarity=0.078  Sum_probs=91.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 011756          320 FITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYPT  397 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~-GRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~  397 (478)
                      ....++..++.+.+|+++||+ |||+.+..+..+.++..+...... +.+......+...+......+....+.+|.+|+
T Consensus        61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  140 (524)
T 2xut_A           61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ  140 (524)
T ss_dssp             HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence            344566778899999999999 999998887766655444444333 333222222233232333446678899999999


Q ss_pred             ChhHHHHHH---HHHHHhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccc
Q 011756          398 SMRSTGAGV---AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  454 (478)
Q Consensus       398 ~~R~~~~g~---~~~~~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~p  454 (478)
                      +.|+++.+.   .+....+|+.++|.+.+.+.+..++...+.+.+++.+++.+..++..|
T Consensus       141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999876666   888889999999988877766556666666666666665555444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.63  E-value=9.5e-07  Score=89.25  Aligned_cols=104  Identities=12%  Similarity=0.018  Sum_probs=70.7

Q ss_pred             HHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh------------------hchhHHHHHHHHHHHHHhhhh
Q 011756          322 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT------------------LQSNILLTALLSGARMFSMGT  383 (478)
Q Consensus       322 ~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~g~  383 (478)
                      ..++.++|.++.|+++||+|||+.+..+..+..+..+...+                  ..+.....+.-++.++...+.
T Consensus        64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~  143 (491)
T 4gc0_A           64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999988877655544333221                  111122222223333333445


Q ss_pred             hhhhhhhcccccCcChhHHHHHHHHHHHhHhHhHHHHHHHHH
Q 011756          384 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  425 (478)
Q Consensus       384 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l  425 (478)
                      .+..+.+.+|..|++.|+...++......+|...++.+....
T Consensus       144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            567789999999999999999998888777777776654433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.22  E-value=9.2e-06  Score=80.34  Aligned_cols=108  Identities=12%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 011756           81 GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVSEAALAWIVMP  158 (478)
Q Consensus        81 ~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~  158 (478)
                      +.++..++.+..+++++...+++..++.|++.+.. .....+..|..|++.||+..+. ++....+|..++|.++..+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          295 AGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence            34444444455566778888888888888765543 3445688999999999999888 477788999999999888777


Q ss_pred             CcchHHHHHHhhHHHHHHHHH-HHhcCCCch
Q 011756          159 ILTWRWLLALSAIPAFVLLIF-IVFMPESPR  188 (478)
Q Consensus       159 ~~~WR~~f~i~~i~~~l~~~~-~~~lpESP~  188 (478)
                      ..||+..|.+.++..++..+. ....||.++
T Consensus       375 ~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          375 SIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            788999998887776665444 334565443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	478
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	9e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 52.0 bits (123), Expect = 9e-08
 Identities = 46/440 (10%), Positives = 119/440 (27%), Gaps = 22/440 (5%)

Query: 21  FGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMSILG 80
           + + +         G+ +  +     +   P +  E G S  +     + +       + 
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGIS------IA 71

Query: 81  GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFST 140
                F+ G +S  S   + L       G  L +  + F  F+ +   S    ++++F  
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPA-----GLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 126

Query: 141 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAH 200
            W  G         +V           +S       +   +        +        A 
Sbjct: 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186

Query: 201 NILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLML 260
            +    A        +    +  +  L        + P   + +    +         +L
Sbjct: 187 YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVL 246

Query: 261 FSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF 320
            +   +   I    +Y     +         E+         S       + A +   + 
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA--LDKSSWAYFLYEYAGIPGTLL 304

Query: 321 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS 380
               ++              G      +  + +   +  +    +  +    +       
Sbjct: 305 CGWMSDKVFRG-------NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 357

Query: 381 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVC-PLVAVGLVTSCHQTAAILLLE 439
            G  ++  + A E+ P     T AG     G +GG V    +    V         +++ 
Sbjct: 358 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 417

Query: 440 ALIVLSVVVILLIPFETKGK 459
              +L+V++++++    K +
Sbjct: 418 GGSILAVILLIVVMIGEKRR 437

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.84
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.11
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.77

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.3e-28  Score=242.29  Aligned_cols=397  Identities=14%  Similarity=0.148  Sum_probs=248.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHH
Q 011756           22 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALV   84 (478)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~   84 (478)
                      .+++|.+++.+.++++..++|+..++.+.|.++ |+|+|++|.|++.|++.+|..+                 +..+.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            478899999999999999999999999999886 5799999999999999887555                 4556666


Q ss_pred             HHHHHHHHhhh----chHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 011756           85 TFVAGLLSAFS----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-  158 (478)
Q Consensus        85 ~~i~~~~~~~a----~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-  158 (478)
                      ..++.++.+++    +++..+++.|++.|++.|.. +....++.|++|+++||+..++.+.+..+|..+++.++..... 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            66777766665    47889999999999998876 4556789999999999999999999999999999887766544 


Q ss_pred             CcchHHHHHHhhHHHHHH-HHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCcc
Q 011756          159 ILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET  237 (478)
Q Consensus       159 ~~~WR~~f~i~~i~~~l~-~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (478)
                      ..+||+.|++.+++.++. ++...+++|+|+......++|+                     .++.   .++..++.+  
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~---~~~~~~~~~--  232 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------------------KNDY---PDDYNEKAE--  232 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------------------CCC---------------
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh---------------------hhhc---ccchhhccc--
Confidence            458999999988777666 4455667787764221111000                     0000   000000000  


Q ss_pred             cccccccccccccccccchhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHH
Q 011756          238 PLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYI  317 (478)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (478)
                             ++.   .......+..++.+   ..+......+......++...+.+.+.....          +.+......
T Consensus       233 -------~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  289 (447)
T d1pw4a_         233 -------QEL---TAKQIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSW  289 (447)
T ss_dssp             -------------CCTHHHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHH
T ss_pred             -------ccc---chhhHHHHHHHcCc---hHHHHHHHhhhhhhhhhcchhhhhhhccccc----------ccccchhhh
Confidence                   000   00000111222221   1222222233333344455555544332111          111122223


Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHH---HHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 011756          318 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFV---CIFLLPLVT--LQSNILLTALLSGARMFSMGTFIIANIFAP  392 (478)
Q Consensus       318 ~~~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  392 (478)
                      ...+..+..+++.++++++.||.+||+.........   .........  ..+.+......+...+...+..+..+.+..
T Consensus       290 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  369 (447)
T d1pw4a_         290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHAL  369 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             hhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556678889999999999999875433222211   111111111  112222233333333334455566788999


Q ss_pred             cccCcChhHHHHHHHHHHHhHhH-hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcccchhhcccc
Q 011756          393 EIYPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVS  469 (478)
Q Consensus       393 E~~p~~~R~~~~g~~~~~~~lg~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~~~~~~~~  469 (478)
                      |.+|++.|+++.|+.+.++++++ +.+|.+.+.+.+..+....+.++.++.+++.++.+++.++ +.|+.+|..+|.+
T Consensus       370 ~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~e~~  446 (447)
T d1pw4a_         370 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG-EKRRHEQLLQELV  446 (447)
T ss_dssp             HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHGGGGGSC
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHhCC
Confidence            99999999999999999999854 5678888888877776667777777777666665555433 2333444555543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.4e-18  Score=167.15  Aligned_cols=365  Identities=10%  Similarity=0.023  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHhHHh-hhhhcCCCcchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhchH
Q 011756           37 FSEAMEVMILSFVGPA-VKSEWGLSSSEESLITTVVFAGMMS-----------------ILGGALVTFVAGLLSAFSPNY   98 (478)
Q Consensus        37 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~s~~~~G~~~-----------------~~~~~~~~~i~~~~~~~a~~~   98 (478)
                      ++..+.........|. +++++|+|+.+.|++.++..++..+                 ++.+.....++..+..+.++.
T Consensus        17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T d1pv7a_          17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3344444444444554 6788999999999999998877555                 344555555556666666655


Q ss_pred             HHH----HHHHHHhhcccCchh-hHHHHHhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhh-
Q 011756           99 ISL----LILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSA-  170 (478)
Q Consensus        99 ~~l----~~~R~l~Gig~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~i~~-  170 (478)
                      ...    ++.+.+.|.+.+... .......+..++  ++|.+..+........|..+++.++..+.+ .+|+..+.... 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~  175 (417)
T d1pv7a_          97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG  175 (417)
T ss_dssp             HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-ccccccccchhh
Confidence            543    445555554444332 222222222222  234455666667777777777777776554 45555555444 


Q ss_pred             HHHHHHHHHHHhcCCCchhhhhcCChhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcccccCCCCccccccccccccccc
Q 011756          171 IPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVR  250 (478)
Q Consensus       171 i~~~l~~~~~~~lpESP~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (478)
                      ...+...+..+..||+|+....+   ++.+                            +   ..+...            
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------~---~~~~~~------------  209 (417)
T d1pv7a_         176 CALILAVLLFFAKTDAPSSATVA---NAVG----------------------------A---NHSAFS------------  209 (417)
T ss_dssp             HHHHHHHHHHSSCCCSCSSSCSS---HHHH----------------------------S---CCCCCC------------
T ss_pred             HHHHHHHHHHHHhcccccchhhh---hhhh----------------------------h---hccccc------------
Confidence            44454556666778877632111   0000                            0   000000            


Q ss_pred             ccccchhhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccccCccchhhHHHHHHHHhhhhhH
Q 011756          251 KSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPG  329 (478)
Q Consensus       251 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  329 (478)
                         .......+. +..+........................+....           .................++..++
T Consensus       210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  275 (417)
T d1pv7a_         210 ---LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA-----------TGEQGTRVFGYVTTMGELLNASI  275 (417)
T ss_dssp             ---HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc-----------ccccchhhhcccccccccccccc
Confidence               000111111 111111111111111111111111111110000           00001111112234445567778


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcChhHHHHHHHHH
Q 011756          330 LLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA  409 (478)
Q Consensus       330 ~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~p~~~R~~~~g~~~~  409 (478)
                      ....+++.||.|||+.+..+..+.++..+......+.+..........+.....++..+.+.+|.+|++.|+++.|+..+
T Consensus       276 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (417)
T d1pv7a_         276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC  355 (417)
T ss_dssp             HTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHT
T ss_pred             hhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHH
Confidence            88899999999999998887776666555555444443333333333333334456678899999999999999998766


Q ss_pred             H-HhHhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhccccccCcccc
Q 011756          410 V-GRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELV  462 (478)
Q Consensus       410 ~-~~lg~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pet~g~~l~  462 (478)
                      + ..+|+.++|.+.+.+.+..+....+++++++.++..++..+..++++..++.
T Consensus       356 ~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  409 (417)
T d1pv7a_         356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL  409 (417)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence            5 4589999999999888877766778888888888777777777665555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=9.8e-10  Score=107.12  Aligned_cols=137  Identities=15%  Similarity=0.052  Sum_probs=91.4

Q ss_pred             HHHHhhhhhHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 011756          320 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL----QSNILLTALLSGARMFSMGTFIIANIFAPEIY  395 (478)
Q Consensus       320 ~~~~~~~~~g~~~~~~l~dr~GRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~E~~  395 (478)
                      ....++..++.+..|+++||+|||+.+..+..+.++..+.....    .+.....+..+...++....++....+.+|.+
T Consensus        66 s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  145 (447)
T d1pw4a_          66 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW  145 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            44556778899999999999999999988876665544433321    11122222222332333334556788999999


Q ss_pred             CcChhHHHHHHHHHHHhHhHhHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHhccccc
Q 011756          396 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLIPFET  456 (478)
Q Consensus       396 p~~~R~~~~g~~~~~~~lg~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~pet  456 (478)
                      |.+.|+++.|+.+....+|+.++|.+...+.... ++...+.+.+.+.++..++.+++++|+
T Consensus       146 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         146 SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            9999999999999999999999998776555443 333445555555555555666655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=4e-08  Score=93.55  Aligned_cols=109  Identities=12%  Similarity=0.072  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhcccCch-hhHHHHHhhccCCCCchhHHHHH-HHHHHHHHHHHHHHHHH
Q 011756           78 ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVF-STFWTFGSVSEAALAWI  155 (478)
Q Consensus        78 ~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~~G~~~~~~~~~~  155 (478)
                      +..+.++..++.+...+.++.+.+++.-++.|++.+.. +...+++.|.+|+++||+..++. +....+|..+++.+++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~  371 (417)
T d1pv7a_         292 LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN  371 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455556666677788999999999999999988875 45567899999999999999975 56678999999999998


Q ss_pred             HhcCcchHHHHHHhhHHHHHHHH-HHHhcCCC
Q 011756          156 VMPILTWRWLLALSAIPAFVLLI-FIVFMPES  186 (478)
Q Consensus       156 ~~~~~~WR~~f~i~~i~~~l~~~-~~~~lpES  186 (478)
                      +.++.||+..|++.++..++..+ ..+.+++.
T Consensus       372 l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         372 MYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            88889999999888876665544 34445433